AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127530 MtrunA17_Chr1g0182711 100.000 446 0 0 1 446 1 446 0.0 899
Msa0127530 MtrunA17_Chr7g0262801 96.644 447 12 2 1 446 1 445 0.0 862
Msa0127530 MtrunA17_Chr4g0050561 52.000 325 155 1 115 438 83 407 4.26e-114 341
Msa0127530 MtrunA17_Chr1g0192151 44.670 394 186 3 65 437 34 416 3.70e-113 339
Msa0127530 MtrunA17_Chr4g0014731 45.000 380 188 1 79 437 38 417 1.39e-112 337
Msa0127530 MtrunA17_Chr3g0108321 52.769 307 140 3 68 372 40 343 1.85e-112 335
Msa0127530 MtrunA17_Chr3g0145011 46.361 371 192 2 74 437 18 388 1.38e-107 324
Msa0127530 MtrunA17_Chr3g0141901 45.251 358 196 0 80 437 28 385 5.75e-106 320
Msa0127530 MtrunA17_Chr8g0345461 46.334 341 175 3 112 446 85 423 7.80e-105 318
Msa0127530 MtrunA17_Chr1g0200081 49.201 313 154 3 136 446 123 432 1.74e-101 309
Msa0127530 MtrunA17_Chr7g0217421 44.490 245 135 1 189 433 40 283 2.06e-61 204
Msa0127530 MtrunA17_Chr7g0264521 47.137 227 117 1 190 416 208 431 5.12e-61 212
Msa0127530 MtrunA17_Chr7g0264521 41.026 234 138 0 182 415 473 706 1.31e-53 191
Msa0127530 MtrunA17_Chr1g0180791 46.696 227 118 1 190 416 207 430 3.26e-60 210
Msa0127530 MtrunA17_Chr1g0180791 41.453 234 137 0 182 415 472 705 1.80e-54 194
Msa0127530 MtrunA17_Chr4g0052411 40.816 245 144 1 189 433 230 473 1.10e-56 199
Msa0127530 MtrunA17_Chr2g0327121 45.815 227 120 2 190 416 209 432 2.72e-56 199
Msa0127530 MtrunA17_Chr2g0327121 41.453 234 137 0 182 415 474 707 2.40e-53 191
Msa0127530 MtrunA17_Chr2g0297281 41.224 245 143 1 189 433 287 530 2.22e-55 196
Msa0127530 MtrunA17_Chr7g0248361 37.377 305 177 5 142 433 136 439 2.64e-55 194
Msa0127530 MtrunA17_Chr4g0031821 43.320 247 136 3 190 433 322 567 5.55e-55 195
Msa0127530 MtrunA17_Chr7g0255651 38.683 243 149 0 173 415 267 509 3.25e-54 190
Msa0127530 MtrunA17_Chr7g0255651 26.496 234 158 4 211 432 36 267 6.36e-19 89.4
Msa0127530 MtrunA17_Chr7g0260601 42.972 249 134 4 190 433 242 487 4.15e-53 189
Msa0127530 MtrunA17_Chr3g0094871 41.870 246 140 2 190 433 13 257 7.76e-53 183
Msa0127530 MtrunA17_Chr6g0476861 39.576 283 165 4 156 433 163 444 1.12e-52 187
Msa0127530 MtrunA17_Chr3g0143721 40.000 245 146 1 189 433 250 493 1.94e-52 187
Msa0127530 MtrunA17_Chr8g0388371 39.442 251 143 2 190 432 406 655 2.39e-52 189
Msa0127530 MtrunA17_Chr5g0429571 42.126 254 139 4 183 431 308 558 2.52e-51 185
Msa0127530 MtrunA17_Chr3g0104211 41.667 252 143 3 183 431 299 549 3.18e-50 182
Msa0127530 MtrunA17_Chr7g0255691 37.786 262 161 1 173 432 271 532 3.47e-49 176
Msa0127530 MtrunA17_Chr7g0255691 29.545 220 149 3 193 408 22 239 2.07e-24 105
Msa0127530 MtrunA17_Chr8g0362771 39.754 244 144 2 190 433 239 479 5.92e-49 177
Msa0127530 MtrunA17_Chr3g0135721 37.943 282 164 3 153 434 196 466 1.20e-48 177
Msa0127530 MtrunA17_Chr2g0331161 39.683 252 148 2 190 438 417 667 3.58e-48 177
Msa0127530 MtrunA17_Chr7g0255641 40.161 249 146 2 186 432 656 903 2.19e-47 174
Msa0127530 MtrunA17_Chr7g0255641 34.579 214 124 5 227 429 432 640 9.79e-29 119
Msa0127530 MtrunA17_Chr2g0316851 38.298 235 134 4 187 414 593 823 6.48e-47 174
Msa0127530 MtrunA17_Chr6g0456351 40.486 247 141 3 190 434 319 561 3.54e-46 168
Msa0127530 MtrunA17_Chr7g0255721 41.036 251 145 2 184 432 681 930 3.96e-46 171
Msa0127530 MtrunA17_Chr7g0255721 32.636 239 152 4 187 421 385 618 1.83e-30 125
Msa0127530 MtrunA17_Chr4g0033451 39.754 244 138 3 189 426 381 621 4.30e-46 171
Msa0127530 MtrunA17_Chr1g0158881 37.600 250 147 3 187 434 328 570 8.99e-46 169
Msa0127530 MtrunA17_Chr3g0135761 36.140 285 171 3 150 434 191 464 4.50e-45 166
Msa0127530 MtrunA17_Chr5g0432631 39.184 245 145 2 190 434 231 471 1.27e-43 163
Msa0127530 MtrunA17_Chr7g0255901 39.062 256 143 8 178 424 629 880 1.43e-43 163
Msa0127530 MtrunA17_Chr4g0004121 36.538 260 151 5 182 432 236 490 2.67e-42 156
Msa0127530 MtrunA17_Chr2g0277831 38.938 226 136 2 190 414 245 469 7.29e-42 158
Msa0127530 MtrunA17_Chr2g0277831 38.627 233 138 3 186 416 531 760 3.76e-40 153
Msa0127530 MtrunA17_Chr5g0397121 36.327 245 148 4 189 430 514 753 1.46e-41 157
Msa0127530 MtrunA17_Chr1g0195731 38.528 231 133 5 189 415 935 1160 7.42e-41 155
Msa0127530 MtrunA17_Chr1g0204031 38.261 230 134 5 189 415 558 782 2.42e-40 154
Msa0127530 MtrunA17_Chr7g0246111 36.214 243 146 5 176 415 200 436 5.57e-40 150
Msa0127530 MtrunA17_Chr4g0038101 37.391 230 135 5 190 415 723 947 5.94e-40 153
Msa0127530 MtrunA17_Chr8g0387641 35.217 230 141 4 189 415 522 746 1.55e-39 151
Msa0127530 MtrunA17_Chr4g0026631 35.055 271 146 10 182 446 121 367 1.72e-39 147
Msa0127530 MtrunA17_Chr1g0202371 37.391 230 135 5 189 415 398 621 1.80e-39 150
Msa0127530 MtrunA17_Chr3g0129971 38.723 235 133 5 189 415 297 528 1.91e-39 151
Msa0127530 MtrunA17_Chr1g0195741 37.229 231 136 5 189 415 939 1164 2.74e-39 151
Msa0127530 MtrunA17_Chr2g0321241 33.955 268 153 9 182 446 126 372 6.06e-39 145
Msa0127530 MtrunA17_Chr4g0052271 36.596 235 142 5 182 414 113 342 1.74e-38 144
Msa0127530 MtrunA17_Chr3g0116131 36.889 225 133 5 189 409 903 1122 3.42e-38 148
Msa0127530 MtrunA17_Chr1g0202381 36.522 230 138 5 189 415 469 693 2.51e-37 145
Msa0127530 MtrunA17_Chr6g0462581 36.522 230 137 5 189 415 501 724 2.62e-37 145
Msa0127530 MtrunA17_Chr2g0327231 41.566 166 97 0 183 348 341 506 9.98e-37 140
Msa0127530 MtrunA17_Chr2g0327231 47.727 88 42 1 190 277 155 238 5.96e-19 89.4
Msa0127530 MtrunA17_Chr4g0043381 34.513 226 145 1 190 415 839 1061 1.21e-36 143
Msa0127530 MtrunA17_Chr3g0127401 36.522 230 136 5 190 415 83 306 2.69e-36 137
Msa0127530 MtrunA17_Chr6g0459561 37.398 246 140 8 177 416 371 608 9.19e-36 140
Msa0127530 MtrunA17_Chr3g0086401 38.306 248 126 5 190 415 387 629 1.32e-34 136
Msa0127530 MtrunA17_Chr3g0086401 34.468 235 135 7 200 424 106 331 4.47e-29 120
Msa0127530 MtrunA17_Chr4g0047411 33.922 283 158 7 178 433 166 446 1.71e-34 136
Msa0127530 MtrunA17_Chr3g0086411 35.102 245 138 3 190 416 217 458 1.98e-34 134
Msa0127530 MtrunA17_Chr3g0086411 34.706 170 102 3 276 436 7 176 4.02e-18 86.7
Msa0127530 MtrunA17_Chr5g0432641 34.191 272 171 4 167 434 166 433 5.31e-34 134
Msa0127530 MtrunA17_Chr3g0127431 36.364 231 135 6 190 415 86 309 1.24e-33 130
Msa0127530 MtrunA17_Chr1g0168321 31.597 288 140 6 156 433 134 374 1.67e-33 132
Msa0127530 MtrunA17_Chr8g0357301 32.245 245 152 3 196 431 477 716 3.77e-32 130
Msa0127530 MtrunA17_Chr4g0062081 70.886 79 22 1 191 268 10 88 1.26e-31 116
Msa0127530 MtrunA17_Chr3g0135781 41.615 161 90 2 190 350 57 213 2.25e-31 119
Msa0127530 MtrunA17_Chr6g0459541 33.588 262 137 10 184 415 38 292 4.55e-31 122
Msa0127530 MtrunA17_Chr2g0289231 35.931 231 127 7 189 408 298 518 1.08e-30 124
Msa0127530 MtrunA17_Chr6g0459551 34.632 231 130 7 177 401 91 306 2.26e-26 110
Msa0127530 MtrunA17_Chr5g0432391 37.278 169 97 2 266 431 81 243 4.53e-24 103
Msa0127530 MtrunA17_Chr1g0190401 31.527 203 134 3 173 371 659 860 8.67e-23 102
Msa0127530 MtrunA17_Chr6g0459531 27.362 307 156 13 133 415 2 265 7.62e-17 81.3
Msa0127530 MtrunA17_Chr8g0372701 34.682 173 99 6 192 358 225 389 5.27e-14 73.9
Msa0127530 MtrunA17_Chr5g0404651 34.161 161 93 5 203 358 229 381 1.15e-13 72.8
Msa0127530 MtrunA17_Chr5g0404291 34.965 143 79 5 224 362 387 519 1.58e-13 72.8
Msa0127530 MtrunA17_Chr2g0315971 30.435 184 111 7 195 370 477 651 3.98e-12 68.6
Msa0127530 MtrunA17_Chr2g0292561 32.335 167 84 7 215 360 226 384 9.48e-12 66.6
Msa0127530 MtrunA17_Chr6g0466811 33.333 156 84 6 215 358 236 383 1.23e-11 66.6
Msa0127530 MtrunA17_Chr6g0452361 31.169 154 91 5 212 358 18 163 2.59e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127530 AT4G29040.1 94.843 446 20 1 1 446 1 443 0.0 853
Msa0127530 AT2G20140.1 94.395 446 22 1 1 446 1 443 0.0 847
Msa0127530 AT5G58290.1 51.934 362 170 2 67 427 33 391 1.64e-133 390
Msa0127530 AT5G20000.1 51.692 325 156 1 115 438 85 409 4.48e-112 336
Msa0127530 AT5G19990.2 51.385 325 157 1 115 438 27 351 6.22e-112 334
Msa0127530 AT5G19990.1 51.385 325 157 1 115 438 85 409 6.76e-112 336
Msa0127530 AT5G19990.3 51.385 325 157 1 115 438 85 409 6.76e-112 336
Msa0127530 AT1G09100.1 45.789 380 185 2 79 437 37 416 2.39e-111 335
Msa0127530 AT3G05530.1 46.281 363 174 1 96 437 55 417 2.61e-111 335
Msa0127530 AT1G45000.1 46.631 371 191 3 74 437 15 385 2.93e-106 321
Msa0127530 AT5G43010.1 48.256 344 174 2 98 437 42 385 1.89e-105 318
Msa0127530 AT1G53750.1 46.334 341 175 3 112 446 85 423 3.24e-104 317
Msa0127530 AT1G53780.1 46.199 342 174 4 112 446 257 595 4.40e-98 306
Msa0127530 AT1G53780.4 46.199 342 174 4 112 446 257 595 4.40e-98 306
Msa0127530 AT1G53780.3 46.199 342 174 4 112 446 256 594 5.09e-98 306
Msa0127530 AT1G53780.2 46.199 342 174 4 112 446 278 616 7.98e-98 306
Msa0127530 AT1G45000.2 45.247 263 137 3 74 329 15 277 1.83e-67 219
Msa0127530 AT3G53230.1 47.137 227 117 1 190 416 207 430 1.73e-60 211
Msa0127530 AT3G53230.1 40.323 248 148 0 182 429 472 719 1.72e-54 194
Msa0127530 AT3G09840.1 47.137 227 117 2 190 416 206 429 9.75e-60 209
Msa0127530 AT3G09840.1 41.702 235 136 1 182 415 471 705 1.58e-51 186
Msa0127530 AT5G03340.1 47.137 227 117 2 190 416 206 429 1.02e-59 209
Msa0127530 AT5G03340.1 41.453 234 137 0 182 415 471 704 2.90e-53 191
Msa0127530 AT2G30950.4 41.633 245 142 1 189 433 229 472 2.46e-57 201
Msa0127530 AT2G30950.1 41.633 245 142 1 189 433 225 468 2.83e-57 201
Msa0127530 AT2G30950.2 41.633 245 142 1 189 433 225 468 2.83e-57 201
Msa0127530 AT2G30950.3 41.633 245 142 1 189 433 225 468 2.83e-57 201
Msa0127530 AT5G15250.1 43.673 245 137 1 189 433 222 465 1.64e-55 196
Msa0127530 AT1G06430.1 40.408 245 145 1 189 433 218 461 1.80e-55 196
Msa0127530 AT1G06430.3 40.408 245 145 1 189 433 218 461 1.80e-55 196
Msa0127530 AT1G06430.2 40.408 245 145 1 189 433 218 461 1.80e-55 196
Msa0127530 AT1G07510.1 43.725 247 135 3 190 433 326 571 3.75e-55 196
Msa0127530 AT3G47060.1 43.952 248 131 4 189 431 323 567 7.72e-54 192
Msa0127530 AT5G58870.1 43.952 248 131 4 189 431 327 571 9.73e-54 192
Msa0127530 AT1G50250.1 40.000 245 146 1 189 433 260 503 1.38e-52 188
Msa0127530 AT5G15250.2 39.925 268 137 2 189 433 222 488 4.07e-52 183
Msa0127530 AT2G29080.1 43.496 246 136 2 190 433 321 565 9.65e-52 187
Msa0127530 AT4G23940.1 39.044 251 144 2 190 432 429 678 7.23e-51 185
Msa0127530 AT5G42270.1 38.776 245 149 1 189 433 248 491 1.06e-50 182
Msa0127530 AT3G15120.2 39.485 233 132 3 187 413 725 954 4.91e-49 180
Msa0127530 AT3G15120.1 39.485 233 132 3 187 413 715 944 5.24e-49 180
Msa0127530 AT2G03670.1 38.400 250 151 2 186 432 281 530 1.62e-48 175
Msa0127530 AT2G03670.1 32.661 248 160 3 191 432 22 268 1.33e-35 139
Msa0127530 AT1G05910.1 40.323 248 139 3 189 430 379 623 1.89e-48 178
Msa0127530 AT2G26140.1 40.408 245 142 2 190 434 226 466 6.44e-48 175
Msa0127530 AT3G56690.1 40.000 230 137 1 186 415 719 947 2.53e-47 175
Msa0127530 AT3G56690.1 42.347 196 109 2 220 414 413 605 1.13e-42 161
Msa0127530 AT3G16290.1 39.749 239 143 1 190 428 409 646 4.57e-47 174
Msa0127530 AT5G53170.1 37.200 250 148 3 187 434 358 600 1.48e-45 169
Msa0127530 AT3G02450.1 39.850 266 152 4 183 444 326 587 1.59e-44 164
Msa0127530 AT2G45500.4 35.341 249 150 6 171 415 63 304 1.82e-43 156
Msa0127530 AT2G45500.3 35.341 249 150 6 171 415 63 304 1.82e-43 156
Msa0127530 AT2G45500.2 34.783 253 154 6 167 415 192 437 2.54e-42 156
Msa0127530 AT2G45500.1 35.341 249 150 6 171 415 200 441 2.90e-42 156
Msa0127530 AT1G03000.1 37.743 257 153 6 178 430 645 898 3.55e-42 160
Msa0127530 AT2G45500.5 34.783 253 154 6 167 415 202 447 4.50e-42 155
Msa0127530 AT1G80350.1 35.769 260 153 5 182 432 230 484 2.03e-41 154
Msa0127530 AT1G02890.1 38.095 231 134 5 189 415 942 1167 4.71e-41 157
Msa0127530 AT4G02480.1 38.095 231 134 5 189 415 961 1186 7.10e-41 156
Msa0127530 AT4G28000.3 37.826 230 134 6 189 415 518 741 1.51e-40 155
Msa0127530 AT4G28000.2 37.826 230 134 6 189 415 518 741 1.63e-40 155
Msa0127530 AT4G28000.1 37.826 230 134 6 189 415 516 739 1.68e-40 154
Msa0127530 AT5G53540.1 37.826 230 133 5 190 415 86 309 2.99e-40 149
Msa0127530 AT5G08470.1 36.726 226 140 1 190 415 843 1065 9.17e-40 153
Msa0127530 AT5G08470.3 36.726 226 140 1 190 415 834 1056 9.75e-40 153
Msa0127530 AT2G34560.1 36.283 226 140 3 190 414 102 324 4.85e-39 145
Msa0127530 AT2G34560.2 36.283 226 140 3 190 414 111 333 5.55e-39 145
Msa0127530 AT1G64110.5 35.652 230 140 5 189 415 517 741 1.41e-38 149
Msa0127530 AT1G64110.3 35.652 230 140 5 189 415 517 741 1.41e-38 149
Msa0127530 AT1G64110.2 35.652 230 140 5 189 415 519 743 1.49e-38 149
Msa0127530 AT1G64110.4 35.652 230 140 5 189 415 519 743 1.49e-38 149
Msa0127530 AT1G64110.1 35.652 230 140 5 189 415 514 738 1.76e-38 149
Msa0127530 AT5G52882.1 36.957 230 136 6 189 415 515 738 3.22e-38 148
Msa0127530 AT5G64580.1 37.447 235 136 6 189 415 314 545 6.64e-38 147
Msa0127530 AT3G01610.1 34.959 246 145 3 180 414 222 463 8.52e-38 147
Msa0127530 AT3G01610.1 36.123 227 140 3 190 415 527 749 1.78e-33 134
Msa0127530 AT3G01610.2 34.959 246 145 3 180 414 222 463 8.53e-38 147
Msa0127530 AT3G01610.2 36.123 227 140 3 190 415 527 749 1.74e-33 134
Msa0127530 AT4G27680.1 37.229 231 133 6 190 415 83 306 1.11e-37 142
Msa0127530 AT1G50140.3 37.500 232 132 6 190 415 713 937 1.63e-37 146
Msa0127530 AT1G50140.1 37.500 232 132 6 190 415 713 937 1.63e-37 146
Msa0127530 AT1G50140.4 37.500 232 132 6 190 415 713 937 1.63e-37 146
Msa0127530 AT1G50140.2 37.500 232 132 6 190 415 691 915 1.65e-37 146
Msa0127530 AT1G50140.5 37.500 232 132 6 190 415 691 915 1.65e-37 146
Msa0127530 AT2G03670.2 32.661 248 160 3 191 432 22 268 1.07e-36 140
Msa0127530 AT2G03670.2 38.028 142 87 1 186 326 281 422 3.52e-22 99.0
Msa0127530 AT2G27600.1 34.686 271 147 11 182 446 123 369 1.16e-36 140
Msa0127530 AT3G19740.1 36.087 230 138 5 190 415 703 927 6.58e-36 141
Msa0127530 AT4G24860.4 35.065 231 141 5 189 415 791 1016 8.65e-36 141
Msa0127530 AT4G24860.1 35.065 231 141 5 189 415 818 1043 8.92e-36 141
Msa0127530 AT4G24860.3 35.065 231 141 5 189 415 816 1041 9.08e-36 141
Msa0127530 AT4G24860.2 35.065 231 141 5 189 415 814 1039 1.19e-35 140
Msa0127530 AT3G27120.1 36.327 245 142 8 177 415 389 625 2.46e-35 139
Msa0127530 AT1G79560.2 32.653 245 151 3 196 431 497 736 2.44e-32 130
Msa0127530 AT1G79560.3 32.653 245 151 3 196 431 497 736 2.56e-32 130
Msa0127530 AT1G79560.1 32.653 245 151 3 196 431 497 736 2.85e-32 130
Msa0127530 AT4G04910.1 33.453 278 156 8 178 428 203 478 5.54e-32 129
Msa0127530 AT4G04180.1 35.808 229 130 6 189 408 317 537 9.00e-32 128
Msa0127530 AT4G04180.2 35.808 229 130 6 189 408 312 532 9.43e-32 128
Msa0127530 AT1G62130.2 32.143 224 133 6 189 409 744 951 5.73e-28 117
Msa0127530 AT1G62130.1 32.143 224 133 6 189 409 751 958 5.96e-28 117
Msa0127530 AT1G02890.2 33.766 231 116 6 189 415 942 1139 2.64e-26 112
Msa0127530 AT3G04340.1 33.511 188 120 3 186 372 782 965 5.02e-23 103
Msa0127530 AT5G08470.2 35.135 148 93 1 190 337 843 987 6.49e-20 93.2
Msa0127530 AT2G18193.1 34.568 162 93 6 201 357 219 372 1.07e-12 70.1
Msa0127530 AT2G18330.1 31.844 179 104 7 186 362 354 516 9.56e-12 67.4
Msa0127530 AT4G36580.1 30.481 187 100 7 184 362 349 513 1.06e-11 67.4

Find 137 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGCTGCCGTCTTGTTTC+CGG 0.187678 1_3:+56930684 None:intergenic
AGCAAGGTCTTTCCTGTTCC+AGG 0.251915 1_3:+56928689 None:intergenic
AAAAGTTCCCTCACAAGTTT+TGG 0.253191 1_3:+56927944 None:intergenic
TAGAGAGACCTCAATCAAAA+TGG 0.277129 1_3:+56926055 None:intergenic
CTTTCAAATTTCACCGACTT+TGG 0.284176 1_3:-56926093 Msa0127530:three_prime_UTR
TGGTTTAGATGCGCAGATTC+AGG 0.304376 1_3:-56928807 Msa0127530:CDS
TGACCCATCGTCGATCGATT+TGG 0.312875 1_3:+56930749 None:intergenic
GGTGAAGGATTATTTGTTGA+TGG 0.316417 1_3:-56930516 Msa0127530:CDS
AGGAGATGTAAAAGTGATTC+TGG 0.336312 1_3:-56927635 Msa0127530:CDS
AAGCTGGCTTACTTGCTCTA+AGG 0.338560 1_3:-56927278 Msa0127530:CDS
GCCGATGAGTGTTGGGAATC+TGG 0.341792 1_3:-56930402 Msa0127530:CDS
GCCGTCTTGTTTCCGGTCAC+CGG 0.353994 1_3:+56930691 None:intergenic
ATTTCATCCACAACTGCATA+TGG 0.355370 1_3:+56926155 None:intergenic
CTTCACATATATAGTCCTTC+TGG 0.358495 1_3:+56926283 None:intergenic
CCTGAACTATATGAAGATAT+TGG 0.363458 1_3:-56928749 Msa0127530:CDS
GAAAGTCGAGAAGGCTCCTT+TGG 0.379073 1_3:-56928849 Msa0127530:CDS
TTGAATCAAAACCATCTAAC+TGG 0.394542 1_3:+56927659 None:intergenic
ATTCTCTGGAGCTGATATAA+AGG 0.399716 1_3:-56927313 Msa0127530:CDS
TCCTTTGCCTTCTTAAAGTC+GGG 0.401797 1_3:+56926337 None:intergenic
CCAATATCTTCATATAGTTC+AGG 0.405223 1_3:+56928749 None:intergenic
TCATGCTATTGTTTCGAGTT+CGG 0.405752 1_3:-56930360 Msa0127530:CDS
GGCGGAGGAAGATAGATCTA+AGG 0.407560 1_3:-56930444 Msa0127530:CDS
TATCAGGTTCTATCGGTTGT+TGG 0.410524 1_3:-56928911 Msa0127530:intron
AAGAAGGTTGGGGATAATAA+AGG 0.419173 1_3:+56926254 None:intergenic
CATATAGTTCAGGATGTGTA+AGG 0.423583 1_3:+56928759 None:intergenic
GGTCACCGGGATGGCCTTGT+CGG 0.424135 1_3:+56930705 None:intergenic
GCTATTGTTTCGAGTTCGGT+TGG 0.424882 1_3:-56930356 Msa0127530:CDS
GCCTTGTCGGTTCATGCCGC+CGG 0.428871 1_3:+56930718 None:intergenic
TGTTTCGAGTTCGGTTGGGC+CGG 0.432915 1_3:-56930351 Msa0127530:CDS
ATCCTTTGCCTTCTTAAAGT+CGG 0.438674 1_3:+56926336 None:intergenic
CTCAGCTTGCACTTCGATAC+CGG 0.441459 1_3:+56930557 None:intergenic
TAAAGTGTTTGGCACGTTCA+AGG 0.441738 1_3:+56930793 None:intergenic
GCTACATTCTTGCGTGTAGT+AGG 0.441990 1_3:-56928001 Msa0127530:CDS
TCGTAAACAACGCAAACAAA+AGG 0.444206 1_3:-56930615 Msa0127530:CDS
GTGGCTCGCCGATGAGTGTT+GGG 0.452232 1_3:-56930409 Msa0127530:CDS
ACACGCGCCGGTGGTGCTGC+TGG 0.453673 1_3:+56930641 None:intergenic
CCGTCTTGTTTCCGGTCACC+GGG 0.455694 1_3:+56930692 None:intergenic
GTTGGGCCGGAGTATTATGT+TGG 0.456605 1_3:-56930338 Msa0127530:CDS
GAGTTGCTGAACCAGTTAGA+TGG 0.457903 1_3:-56927670 Msa0127530:CDS
CGACCAGGTCGTAGCAAAGC+TGG 0.459189 1_3:+56927586 None:intergenic
TCAAGAGAGGTTGAAGCCTC+AGG 0.464256 1_3:-56930474 Msa0127530:CDS
AACAAAGAAGAGTGAACAAA+AGG 0.465923 1_3:-56930824 Msa0127530:five_prime_UTR
ATGACGAAGGATGAATTCTC+TGG 0.469733 1_3:-56927327 Msa0127530:CDS
GTGATGTTTAAGAAGAAAGA+AGG 0.471189 1_3:-56926310 Msa0127530:CDS
CTATTGTTTCGAGTTCGGTT+GGG 0.476955 1_3:-56930355 Msa0127530:CDS
CGTGGCTCGCCGATGAGTGT+TGG 0.479586 1_3:-56930410 Msa0127530:CDS
AGTTCAAACCTTTGCAAGCA+AGG 0.479869 1_3:+56928673 None:intergenic
TTGGGCCGGAGTATTATGTT+GGG 0.486241 1_3:-56930337 Msa0127530:CDS
ATCAAGACTTTCAATTCTGT+TGG 0.488586 1_3:+56927609 None:intergenic
TACGACCTGGTCGTATTGAT+AGG 0.488820 1_3:-56927576 Msa0127530:CDS
TTATATGGAGAACCTGGAAC+AGG 0.489995 1_3:-56928701 Msa0127530:CDS
TGAATTGATACAAAAGTACT+TGG 0.490609 1_3:-56927975 Msa0127530:CDS
GGTAACCGTGAAGCGGCATC+CGG 0.494841 1_3:+56930590 None:intergenic
AGAGAGACCTCAATCAAAAT+GGG 0.498162 1_3:+56926056 None:intergenic
AGATGAAAGTGTAAAGTGTT+TGG 0.498627 1_3:+56930782 None:intergenic
GACAAGGCCATCCCGGTGAC+CGG 0.499250 1_3:-56930703 Msa0127530:CDS
GAATCTTATGCTGACATTGG+TGG 0.503180 1_3:-56928827 Msa0127530:CDS
GTTGAAGCCTCAGGAGGAGA+AGG 0.505715 1_3:-56930465 Msa0127530:CDS
CCTTGTCGGTTCATGCCGCC+GGG 0.509201 1_3:+56930719 None:intergenic
AAATTAAGATACACACATCA+AGG 0.509917 1_3:-56927389 Msa0127530:intron
AAGGCAATATGTACTGAAGC+TGG 0.512575 1_3:-56927294 Msa0127530:CDS
ACTTTCATGACTGAGACCAT+TGG 0.513179 1_3:+56928866 None:intergenic
ATTCGAACCAGCAGCACCAC+CGG 0.515131 1_3:-56930648 Msa0127530:CDS
TTGGAATCTTATGCTGACAT+TGG 0.515821 1_3:-56928830 Msa0127530:CDS
TATTGGCATCAAGCCACCTA+AGG 0.517311 1_3:-56928732 Msa0127530:CDS
GAAATTTGAAAGCAAATATG+TGG 0.528960 1_3:+56926104 None:intergenic
AATCGATCGACGATGGGTCA+AGG 0.531008 1_3:-56930746 Msa0127530:exon
ATTTCCAAATCGATCGACGA+TGG 0.533966 1_3:-56930753 Msa0127530:exon
CTTGTTTCCGGTCACCGGGA+TGG 0.534444 1_3:+56930696 None:intergenic
AAAGTGTTTGGCACGTTCAA+GGG 0.538764 1_3:+56930794 None:intergenic
TCATCAATGAAAACAATAGC+AGG 0.540016 1_3:+56927899 None:intergenic
GAAGGATTATTTGTTGATGG+AGG 0.541197 1_3:-56930513 Msa0127530:CDS
CGTAAACAACGCAAACAAAA+GGG 0.541325 1_3:-56930614 Msa0127530:CDS
TCTAAGGGAACGCCGAATGA+AGG 0.547948 1_3:-56927262 Msa0127530:intron
GATCAACTTCGTCTTGCAGA+AGG 0.548110 1_3:+56928888 None:intergenic
TTTCCAAATCGATCGACGAT+GGG 0.552350 1_3:-56930752 Msa0127530:exon
ATGAACCGACAAGGCCATCC+CGG 0.552573 1_3:-56930710 Msa0127530:CDS
AGGAAAGACCTTGCTTGCAA+AGG 0.553721 1_3:-56928681 Msa0127530:intron
GACTCATCCCGACTTTAAGA+AGG 0.557748 1_3:-56926344 Msa0127530:CDS
ACAACGCAAACAAAAGGGTC+CGG 0.558245 1_3:-56930609 Msa0127530:CDS
GCCTCAGGAGGAGAAGGCGG+AGG 0.564123 1_3:-56930459 Msa0127530:CDS
AGGGTCCGGATGCCGCTTCA+CGG 0.566054 1_3:-56930595 Msa0127530:CDS
TGAGGCTGTTAAAGCTTGAG+AGG 0.566340 1_3:-56930538 Msa0127530:CDS
TATGAAACAATTTCCAAAGT+CGG 0.566779 1_3:+56926080 None:intergenic
GTCATATTATATGGAGAACC+TGG 0.570307 1_3:-56928707 Msa0127530:CDS
TCCAGATTCCCAACACTCAT+CGG 0.570778 1_3:+56930401 None:intergenic
GATCCAGCTTTGCTACGACC+TGG 0.573418 1_3:-56927589 Msa0127530:CDS
GCAAGACGAAGTTGATCCAA+TGG 0.579653 1_3:-56928882 Msa0127530:CDS
ACTAGCTGATGATGTCAACT+TGG 0.580062 1_3:-56927361 Msa0127530:CDS
TACAGGTATGATGCTCACTC+AGG 0.582791 1_3:-56927724 Msa0127530:intron
GGAAGAATTTGTTATGACGA+AGG 0.583336 1_3:-56927340 Msa0127530:CDS
ACTTTATCCATATGCAGTTG+TGG 0.583879 1_3:-56926162 Msa0127530:three_prime_UTR
TCCTCCGCCTTCTCCTCCTG+AGG 0.587094 1_3:+56930458 None:intergenic
GTGGAGAACGTGAAATTCAA+AGG 0.587888 1_3:-56927702 Msa0127530:CDS
GATAAGGATCAATTGGAGCC+TGG 0.591343 1_3:-56930299 Msa0127530:CDS
ACGGTTACCGACGGTGACTC+CGG 0.591399 1_3:-56930576 Msa0127530:CDS
AGCTGGCTTACTTGCTCTAA+GGG 0.591923 1_3:-56927277 Msa0127530:CDS
ATATAGTTCAGGATGTGTAA+GGG 0.593502 1_3:+56928760 None:intergenic
ATACAAAAGTACTTGGGAGA+TGG 0.593824 1_3:-56927968 Msa0127530:CDS
TCCCGACTTTAAGAAGGCAA+AGG 0.594284 1_3:-56926338 Msa0127530:CDS
ATTGGCATCAAGCCACCTAA+GGG 0.598240 1_3:-56928731 Msa0127530:CDS
AGGTATGATGCTCACTCAGG+TGG 0.601443 1_3:-56927721 Msa0127530:CDS
AAAATCCCAACATAATACTC+CGG 0.602001 1_3:+56930332 None:intergenic
TGCCGCTTCACGGTTACCGA+CGG 0.603500 1_3:-56930585 Msa0127530:CDS
ATTGATGAAATTGATGCGGT+CGG 0.608145 1_3:-56927884 Msa0127530:CDS
AAGAAAGAAGGAGTGCCAGA+AGG 0.608420 1_3:-56926298 Msa0127530:CDS
GCAGATTCAGGAAATTAAAG+AGG 0.609731 1_3:-56928795 Msa0127530:CDS
GTTAAAGCTTGAGAGGGTGA+AGG 0.609846 1_3:-56930531 Msa0127530:CDS
AGATGGTCCAAAACTTGTGA+GGG 0.610145 1_3:-56927951 Msa0127530:CDS
CACCGTCGGTAACCGTGAAG+CGG 0.611205 1_3:+56930583 None:intergenic
TATAGTTCAGGATGTGTAAG+GGG 0.615490 1_3:+56928761 None:intergenic
AGTTTGTTGCGTATCAAGAG+AGG 0.615599 1_3:-56930487 Msa0127530:CDS
ACGATGGGTCAAGGAACTCC+CGG 0.616899 1_3:-56930737 Msa0127530:CDS
CCCGGTGACCGGAAACAAGA+CGG 0.618125 1_3:-56930692 Msa0127530:CDS
CTCAGTCATGAAAGTCGAGA+AGG 0.618736 1_3:-56928858 Msa0127530:CDS
GCAGCACCACCGGCGCGTGT+AGG 0.619998 1_3:-56930638 Msa0127530:CDS
GAAGCCTCAGGAGGAGAAGG+CGG 0.620796 1_3:-56930462 Msa0127530:CDS
CCCGGCGGCATGAACCGACA+AGG 0.629868 1_3:-56930719 Msa0127530:CDS
TGGCATCAAGCCACCTAAGG+GGG 0.630368 1_3:-56928729 Msa0127530:CDS
TGCATCAAAATAGCACAACC+AGG 0.642077 1_3:+56930281 None:intergenic
ATCTTCCTATCAATACGACC+AGG 0.647291 1_3:+56927571 None:intergenic
TTACGACCTACACGCGCCGG+TGG 0.648178 1_3:+56930632 None:intergenic
GAGATGGTCCAAAACTTGTG+AGG 0.650908 1_3:-56927952 Msa0127530:CDS
CGGTATCGAAGTGCAAGCTG+AGG 0.651265 1_3:-56930556 Msa0127530:CDS
TGTTTACGACCTACACGCGC+CGG 0.657461 1_3:+56930629 None:intergenic
TTCGATACCGGAGTCACCGT+CGG 0.658712 1_3:+56930569 None:intergenic
AGAGAGGTTGAAGCCTCAGG+AGG 0.663698 1_3:-56930471 Msa0127530:CDS
TTTCATTGATGAAATTGATG+CGG 0.663748 1_3:-56927888 Msa0127530:CDS
AATAGCAGGAGAAAGATCAT+CGG 0.664706 1_3:+56927913 None:intergenic
ATGTCAGCATAAGATTCCAA+AGG 0.668551 1_3:+56928833 None:intergenic
TTGATGCGGTCGGTACAAAG+AGG 0.668806 1_3:-56927874 Msa0127530:intron
GAGGCTGTTAAAGCTTGAGA+GGG 0.670530 1_3:-56930537 Msa0127530:CDS
GAATTGATACAAAAGTACTT+GGG 0.673200 1_3:-56927974 Msa0127530:CDS
TTGGCATCAAGCCACCTAAG+GGG 0.701914 1_3:-56928730 Msa0127530:CDS
GATGAGTGTTGGGAATCTGG+AGG 0.708876 1_3:-56930399 Msa0127530:CDS
TCTAAGGTTGATGATCTACG+TGG 0.778964 1_3:-56930428 Msa0127530:CDS
ATGGGTCAAGGAACTCCCGG+CGG 0.785552 1_3:-56930734 Msa0127530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGATTTTTTTCATTTT+TGG - chr1_3:56928434-56928453 Msa0127530:intron 10.0%
!! TTTAATTAATAAATAAATCG+TGG - chr1_3:56930071-56930090 Msa0127530:intron 10.0%
!!! TGTTGTTTTTATAATTTTGT+TGG - chr1_3:56926680-56926699 Msa0127530:intron 15.0%
!!! TTTTATAATTTTGTTGGAAT+TGG - chr1_3:56926686-56926705 Msa0127530:intron 15.0%
!!! TCATTATGATTTTGATTATA+AGG - chr1_3:56926738-56926757 Msa0127530:intron 15.0%
!!! CATTATGATTTTGATTATAA+GGG - chr1_3:56926739-56926758 Msa0127530:intron 15.0%
!! TTTCAAAAAAGAGATTATAA+GGG - chr1_3:56926771-56926790 Msa0127530:intron 15.0%
!!! CTTATTTTCATAAATTCTTT+AGG - chr1_3:56926900-56926919 Msa0127530:intron 15.0%
!! GAAATATTCTTTATAGAATT+AGG - chr1_3:56927866-56927885 Msa0127530:intron 15.0%
!!! ATTATGATTGATTTTTTATC+AGG - chr1_3:56927934-56927953 Msa0127530:CDS 15.0%
!!! ATAAATTTTTAACCTTCATT+CGG + chr1_3:56929614-56929633 None:intergenic 15.0%
!! ATTTATATACAGCATTTATT+GGG - chr1_3:56929777-56929796 Msa0127530:intron 15.0%
!!! TTGTTTCATCTTTTAATATT+AGG - chr1_3:56929991-56930010 Msa0127530:intron 15.0%
!!! TGTTTCATCTTTTAATATTA+GGG - chr1_3:56929992-56930011 Msa0127530:intron 15.0%
!! TAAAAAAACATAAGATTGAT+AGG + chr1_3:56930398-56930417 None:intergenic 15.0%
!!! TCAATCTTATGTTTTTTTAA+AGG - chr1_3:56930399-56930418 Msa0127530:CDS 15.0%
!! AATAGTAAGATATCATAAAT+TGG + chr1_3:56930476-56930495 None:intergenic 15.0%
!!! GATTTTATCTTTTGTTGATA+AGG - chr1_3:56926546-56926565 Msa0127530:intron 20.0%
!! AAATTTGAATTGTTGATCTA+GGG - chr1_3:56926640-56926659 Msa0127530:intron 20.0%
!! CTTTCAAAAAAGAGATTATA+AGG - chr1_3:56926770-56926789 Msa0127530:intron 20.0%
!!! TATAAACATTTAAGCTGTTT+TGG + chr1_3:56926933-56926952 None:intergenic 20.0%
!!! TTCACTCTCATTTTATAAAT+GGG + chr1_3:56927147-56927166 None:intergenic 20.0%
!!! ATTCACTCTCATTTTATAAA+TGG + chr1_3:56927148-56927167 None:intergenic 20.0%
!!! TTCACTCTAGTTTTATAAAA+GGG + chr1_3:56927220-56927239 None:intergenic 20.0%
!!! ATTCACTCTAGTTTTATAAA+AGG + chr1_3:56927221-56927240 None:intergenic 20.0%
!! ATTTGATACCATACTATAAT+TGG - chr1_3:56927789-56927808 Msa0127530:intron 20.0%
!!! ATGAAAATTAGGAAAAGTTT+TGG - chr1_3:56927841-56927860 Msa0127530:intron 20.0%
!! TATATGAATCCTAAAATTGT+GGG + chr1_3:56929025-56929044 None:intergenic 20.0%
!! CATTTATATACAGCATTTAT+TGG - chr1_3:56929776-56929795 Msa0127530:intron 20.0%
!!! CTTTTAGTATTAAGACAATA+AGG + chr1_3:56929873-56929892 None:intergenic 20.0%
!!! ATAGTTAGAAAAAGTTTTGT+GGG + chr1_3:56930301-56930320 None:intergenic 20.0%
!!! TATAGTTAGAAAAAGTTTTG+TGG + chr1_3:56930302-56930321 None:intergenic 20.0%
!!! TAACTATAGTTACATTTTGT+AGG - chr1_3:56930314-56930333 Msa0127530:CDS 20.0%
!! AAATAAAAAGAAAGAAGGTT+GGG + chr1_3:56930621-56930640 None:intergenic 20.0%
!! AGATCAAATAAAAAGAAAGA+AGG + chr1_3:56930626-56930645 None:intergenic 20.0%
!!! TTTTGTTGATAAGGATCAAT+TGG - chr1_3:56926555-56926574 Msa0127530:intron 25.0%
!!! TGCTATTTTGATGCATAATA+AGG - chr1_3:56926588-56926607 Msa0127530:intron 25.0%
! GAAATTTGAATTGTTGATCT+AGG - chr1_3:56926639-56926658 Msa0127530:intron 25.0%
!! TGACTTATTTGAGTTTACTT+TGG - chr1_3:56926805-56926824 Msa0127530:intron 25.0%
!! GACTTATTTGAGTTTACTTT+GGG - chr1_3:56926806-56926825 Msa0127530:intron 25.0%
! ATAACATGTCTATAAGTTGT+TGG - chr1_3:56926876-56926895 Msa0127530:intron 25.0%
! ATAAGCACTTATATGATAAG+CGG - chr1_3:56926967-56926986 Msa0127530:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG - chr1_3:56927009-56927028 Msa0127530:intron 25.0%
! TGTTTGATGTAACTAAAGTA+TGG - chr1_3:56927057-56927076 Msa0127530:intron 25.0%
! GTTTGATGTAACTAAAGTAT+GGG - chr1_3:56927058-56927077 Msa0127530:intron 25.0%
! TATAAAATGAGAGTGAATTG+AGG - chr1_3:56927150-56927169 Msa0127530:intron 25.0%
! TTATAGAATTAGCTATCTCT+AGG - chr1_3:56927389-56927408 Msa0127530:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG - chr1_3:56927009-56927028 Msa0127530:intron 25.0%
! ATACCATACTATAATTGGTT+TGG - chr1_3:56927794-56927813 Msa0127530:intron 25.0%
!! TACCATACTATAATTGGTTT+GGG - chr1_3:56927795-56927814 Msa0127530:intron 25.0%
! CAAATTATACAGACAATAAC+AGG + chr1_3:56927897-56927916 None:intergenic 25.0%
!!! GATTTTTTATCAGGTTCTAT+CGG - chr1_3:56927943-56927962 Msa0127530:CDS 25.0%
!!! TTGTTTACAATGTTACTTTC+TGG - chr1_3:56928353-56928372 Msa0127530:intron 25.0%
!! GATAAATACTGTATTGATAC+TGG - chr1_3:56928552-56928571 Msa0127530:intron 25.0%
!!! TGAATTGATACAAAAGTACT+TGG - chr1_3:56928886-56928905 Msa0127530:CDS 25.0%
!!! GAATTGATACAAAAGTACTT+GGG - chr1_3:56928887-56928906 Msa0127530:CDS 25.0%
! TTTCATTGATGAAATTGATG+CGG - chr1_3:56928973-56928992 Msa0127530:intron 25.0%
! CTATATGAATCCTAAAATTG+TGG + chr1_3:56929026-56929045 None:intergenic 25.0%
!!! CACAATTTTAGGATTCATAT+AGG - chr1_3:56929024-56929043 Msa0127530:intron 25.0%
!!! AATTTTAGGATTCATATAGG+TGG - chr1_3:56929027-56929046 Msa0127530:intron 25.0%
!!! ATTTTAGGATTCATATAGGT+GGG - chr1_3:56929028-56929047 Msa0127530:intron 25.0%
! CAATTAAACTCATGAATGTA+AGG + chr1_3:56929106-56929125 None:intergenic 25.0%
! TAATTGTTAATATGCCTTAC+AGG - chr1_3:56929120-56929139 Msa0127530:intron 25.0%
! AAATTAAGATACACACATCA+AGG - chr1_3:56929472-56929491 Msa0127530:intron 25.0%
! ACCCAAATATATTATGCTAA+GGG - chr1_3:56929707-56929726 Msa0127530:intron 25.0%
! AAAAACTAAGTTGTAGTTGT+TGG + chr1_3:56929955-56929974 None:intergenic 25.0%
!! TTCATCTTTTAATATTAGGG+TGG - chr1_3:56929995-56930014 Msa0127530:intron 25.0%
! TGATTCACTGAAGTAAAAAT+TGG + chr1_3:56930362-56930381 None:intergenic 25.0%
! TAAGATTGATAGGTAAAGAT+GGG + chr1_3:56930388-56930407 None:intergenic 25.0%
! ATAAGATTGATAGGTAAAGA+TGG + chr1_3:56930389-56930408 None:intergenic 25.0%
!! GATTTGTCTGTATTATCTTT+TGG - chr1_3:56930421-56930440 Msa0127530:CDS 25.0%
! AGTAAGATATCATAAATTGG+AGG + chr1_3:56930473-56930492 None:intergenic 25.0%
!!! ATTGCTTTTATATCTTGTTC+AGG - chr1_3:56930493-56930512 Msa0127530:CDS 25.0%
! AATAAAAAGAAAGAAGGTTG+GGG + chr1_3:56930620-56930639 None:intergenic 25.0%
! CAAATAAAAAGAAAGAAGGT+TGG + chr1_3:56930622-56930641 None:intergenic 25.0%
!! GTTATACTTTTGCAAACAAA+TGG - chr1_3:56930651-56930670 Msa0127530:CDS 25.0%
! GAAATTTGAAAGCAAATATG+TGG + chr1_3:56930760-56930779 None:intergenic 25.0%
! TATGAAACAATTTCCAAAGT+CGG + chr1_3:56930784-56930803 None:intergenic 25.0%
AACAAAGAAGAGTGAACAAA+AGG - chr1_3:56926037-56926056 Msa0127530:three_prime_UTR 30.0%
! AGATGAAAGTGTAAAGTGTT+TGG + chr1_3:56926082-56926101 None:intergenic 30.0%
AAAATCCCAACATAATACTC+CGG + chr1_3:56926532-56926551 None:intergenic 30.0%
! AGAGATTATAAGGGTTTGTT+TGG - chr1_3:56926780-56926799 Msa0127530:intron 30.0%
GCTAATAAGCCAAAAAGATA+CGG + chr1_3:56927035-56927054 None:intergenic 30.0%
!!! CTCATTTTATAAATGGGTTG+AGG + chr1_3:56927141-56927160 None:intergenic 30.0%
TATAAAACTAGAGTGAATCG+AGG - chr1_3:56927223-56927242 Msa0127530:intron 30.0%
AAGCTCATTACTTCTTCAAA+AGG + chr1_3:56927768-56927787 None:intergenic 30.0%
TTGAACCTGGAATGAAAATT+AGG - chr1_3:56927830-56927849 Msa0127530:intron 30.0%
! CTTTTCCTAATTTTCATTCC+AGG + chr1_3:56927838-56927857 None:intergenic 30.0%
ATATAGTTCAGGATGTGTAA+GGG + chr1_3:56928104-56928123 None:intergenic 30.0%
CCAATATCTTCATATAGTTC+AGG + chr1_3:56928115-56928134 None:intergenic 30.0%
CCTGAACTATATGAAGATAT+TGG - chr1_3:56928112-56928131 Msa0127530:intron 30.0%
TCAATAATGAATCAATGCTG+TGG - chr1_3:56928232-56928251 Msa0127530:intron 30.0%
ATTATCAGATCTGTAGAGTT+TGG - chr1_3:56928305-56928324 Msa0127530:intron 30.0%
AAGATGAAAATCTCTGTGTT+TGG - chr1_3:56928468-56928487 Msa0127530:intron 30.0%
AGATGAAAATCTCTGTGTTT+GGG - chr1_3:56928469-56928488 Msa0127530:intron 30.0%
! GATTCCTTATGTACTGTTTT+GGG - chr1_3:56928499-56928518 Msa0127530:intron 30.0%
! ATTCCTTATGTACTGTTTTG+GGG - chr1_3:56928500-56928519 Msa0127530:intron 30.0%
TGCTTCTTACTAATACAACT+TGG + chr1_3:56928674-56928693 None:intergenic 30.0%
! TTAAAGAAGCAGCAGTTTTT+CGG + chr1_3:56928718-56928737 None:intergenic 30.0%
TCATCAATGAAAACAATAGC+AGG + chr1_3:56928965-56928984 None:intergenic 30.0%
!!! TTTTAGGATTCATATAGGTG+GGG - chr1_3:56929029-56929048 Msa0127530:intron 30.0%
TTGAATCAAAACCATCTAAC+TGG + chr1_3:56929205-56929224 None:intergenic 30.0%
!!! TTAGATGGTTTTGATTCAAG+AGG - chr1_3:56929206-56929225 Msa0127530:intron 30.0%
ATCAAGACTTTCAATTCTGT+TGG + chr1_3:56929255-56929274 None:intergenic 30.0%
CAAAACTAATCATGTTTACC+TGG + chr1_3:56929358-56929377 None:intergenic 30.0%
GAATCAACAGAAACAACATT+AGG + chr1_3:56929386-56929405 None:intergenic 30.0%
! TGCATATTTAAGATACCACA+TGG + chr1_3:56929408-56929427 None:intergenic 30.0%
GTCAAAACTAGCAAGTTAAT+AGG + chr1_3:56929667-56929686 None:intergenic 30.0%
GACCCAAATATATTATGCTA+AGG - chr1_3:56929706-56929725 Msa0127530:intron 30.0%
GCCCTTAGCATAATATATTT+GGG + chr1_3:56929711-56929730 None:intergenic 30.0%
TATACAGCATTTATTGGGTT+AGG - chr1_3:56929782-56929801 Msa0127530:intron 30.0%
ATACAGCATTTATTGGGTTA+GGG - chr1_3:56929783-56929802 Msa0127530:intron 30.0%
AGCAACCTAAAAAATTTGCA+TGG - chr1_3:56929844-56929863 Msa0127530:intron 30.0%
GGTAACTTGAGTGTATATTT+AGG - chr1_3:56930335-56930354 Msa0127530:CDS 30.0%
GTGATGTTTAAGAAGAAAGA+AGG - chr1_3:56930551-56930570 Msa0127530:CDS 30.0%
!!! TTCATATCCCATTTTGATTG+AGG - chr1_3:56930798-56930817 Msa0127530:five_prime_UTR 30.0%
TCGTAAACAACGCAAACAAA+AGG - chr1_3:56926246-56926265 Msa0127530:three_prime_UTR 35.0%
CGTAAACAACGCAAACAAAA+GGG - chr1_3:56926247-56926266 Msa0127530:three_prime_UTR 35.0%
! GGTGAAGGATTATTTGTTGA+TGG - chr1_3:56926345-56926364 Msa0127530:CDS 35.0%
! GAAGGATTATTTGTTGATGG+AGG - chr1_3:56926348-56926367 Msa0127530:CDS 35.0%
!! TCATGCTATTGTTTCGAGTT+CGG - chr1_3:56926501-56926520 Msa0127530:intron 35.0%
TGATGTAACTAAAGTATGGG+AGG - chr1_3:56927061-56927080 Msa0127530:intron 35.0%
GATGTAACTAAAGTATGGGA+GGG - chr1_3:56927062-56927081 Msa0127530:intron 35.0%
!! TCGGAGTAATTTGCTGTTTA+AGG - chr1_3:56927248-56927267 Msa0127530:intron 35.0%
!! ATTTGCTGTTTAAGGTAGAC+TGG - chr1_3:56927256-56927275 Msa0127530:intron 35.0%
!! TTTGCTGTTTAAGGTAGACT+GGG - chr1_3:56927257-56927276 Msa0127530:intron 35.0%
TTCATCGAAAGGAGATGAAT+GGG + chr1_3:56927316-56927335 None:intergenic 35.0%
ATTCATCGAAAGGAGATGAA+TGG + chr1_3:56927317-56927336 None:intergenic 35.0%
AAGCGCATAAATTCATCGAA+AGG + chr1_3:56927327-56927346 None:intergenic 35.0%
!! TAGTTGCTGTTTAATGTGAC+TGG - chr1_3:56927678-56927697 Msa0127530:CDS 35.0%
!! AGTTGCTGTTTAATGTGACT+GGG - chr1_3:56927679-56927698 Msa0127530:CDS 35.0%
TGTTTAATGTGACTGGGAAT+GGG - chr1_3:56927685-56927704 Msa0127530:CDS 35.0%
ACTTCTTCAAAAGGATACGA+AGG + chr1_3:56927759-56927778 None:intergenic 35.0%
CTCCCAAACCAATTATAGTA+TGG + chr1_3:56927800-56927819 None:intergenic 35.0%
ATGTCAGCATAAGATTCCAA+AGG + chr1_3:56928031-56928050 None:intergenic 35.0%
TTGGAATCTTATGCTGACAT+TGG - chr1_3:56928031-56928050 Msa0127530:intron 35.0%
GCAGATTCAGGAAATTAAAG+AGG - chr1_3:56928066-56928085 Msa0127530:intron 35.0%
TATAGTTCAGGATGTGTAAG+GGG + chr1_3:56928103-56928122 None:intergenic 35.0%
CATATAGTTCAGGATGTGTA+AGG + chr1_3:56928105-56928124 None:intergenic 35.0%
GTCATATTATATGGAGAACC+TGG - chr1_3:56928154-56928173 Msa0127530:intron 35.0%
GATGAAAATCTCTGTGTTTG+GGG - chr1_3:56928470-56928489 Msa0127530:intron 35.0%
ATGAAAATCTCTGTGTTTGG+GGG - chr1_3:56928471-56928490 Msa0127530:intron 35.0%
! GGATTCCTTATGTACTGTTT+TGG - chr1_3:56928498-56928517 Msa0127530:intron 35.0%
!! TTCCTTATGTACTGTTTTGG+GGG - chr1_3:56928501-56928520 Msa0127530:intron 35.0%
!! ATACAAAAGTACTTGGGAGA+TGG - chr1_3:56928893-56928912 Msa0127530:CDS 35.0%
! AAAAGTTCCCTCACAAGTTT+TGG + chr1_3:56928920-56928939 None:intergenic 35.0%
AATAGCAGGAGAAAGATCAT+CGG + chr1_3:56928951-56928970 None:intergenic 35.0%
ATTGATGAAATTGATGCGGT+CGG - chr1_3:56928977-56928996 Msa0127530:intron 35.0%
! TTTAGGATTCATATAGGTGG+GGG - chr1_3:56929030-56929049 Msa0127530:intron 35.0%
TGATGCATTGTATCACTTCA+TGG - chr1_3:56929063-56929082 Msa0127530:intron 35.0%
ATCACTTCATGGACTCTTTA+AGG - chr1_3:56929074-56929093 Msa0127530:intron 35.0%
AGGAGATGTAAAAGTGATTC+TGG - chr1_3:56929226-56929245 Msa0127530:intron 35.0%
!!! CTTGTTTTGATATCAGGAAG+AGG + chr1_3:56929323-56929342 None:intergenic 35.0%
!!! CGTCTTCTTGTTTTGATATC+AGG + chr1_3:56929329-56929348 None:intergenic 35.0%
! AACAAGAAGACGTATTTTCC+AGG - chr1_3:56929337-56929356 Msa0127530:intron 35.0%
!! TTGTTTCTGTTGATTCCATG+TGG - chr1_3:56929390-56929409 Msa0127530:intron 35.0%
!! GGAAGAATTTGTTATGACGA+AGG - chr1_3:56929521-56929540 Msa0127530:intron 35.0%
!! ATTCTCTGGAGCTGATATAA+AGG - chr1_3:56929548-56929567 Msa0127530:intron 35.0%
CGCCCTTAGCATAATATATT+TGG + chr1_3:56929712-56929731 None:intergenic 35.0%
!!! GGATGCCATGCAAATTTTTT+AGG + chr1_3:56929852-56929871 None:intergenic 35.0%
AAGTTGTAGTTGTTGGAACT+GGG + chr1_3:56929948-56929967 None:intergenic 35.0%
TAAGTTGTAGTTGTTGGAAC+TGG + chr1_3:56929949-56929968 None:intergenic 35.0%
TGATCCAAAAGAACAAAAGC+AGG + chr1_3:56930131-56930150 None:intergenic 35.0%
!! AGCACTTTTTATTCTGACAC+TGG + chr1_3:56930193-56930212 None:intergenic 35.0%
AAGTGCTTGTTTGATTCTAC+TGG - chr1_3:56930206-56930225 Msa0127530:intron 35.0%
AGTGCTTGTTTGATTCTACT+GGG - chr1_3:56930207-56930226 Msa0127530:intron 35.0%
CTCAGATATCCTGTCAATAT+AGG + chr1_3:56930237-56930256 None:intergenic 35.0%
!! GCATGTCTTGACTTTAGAAT+GGG - chr1_3:56930263-56930282 Msa0127530:intron 35.0%
ATCCTTTGCCTTCTTAAAGT+CGG + chr1_3:56930528-56930547 None:intergenic 35.0%
CTTCACATATATAGTCCTTC+TGG + chr1_3:56930581-56930600 None:intergenic 35.0%
AAGAAGGTTGGGGATAATAA+AGG + chr1_3:56930610-56930629 None:intergenic 35.0%
ACTTTATCCATATGCAGTTG+TGG - chr1_3:56930699-56930718 Msa0127530:CDS 35.0%
ATTTCATCCACAACTGCATA+TGG + chr1_3:56930709-56930728 None:intergenic 35.0%
!! CTTTCAAATTTCACCGACTT+TGG - chr1_3:56930768-56930787 Msa0127530:five_prime_UTR 35.0%
AGAGAGACCTCAATCAAAAT+GGG + chr1_3:56930808-56930827 None:intergenic 35.0%
TAGAGAGACCTCAATCAAAA+TGG + chr1_3:56930809-56930828 None:intergenic 35.0%
! AAAGTGTTTGGCACGTTCAA+GGG + chr1_3:56926070-56926089 None:intergenic 40.0%
! TAAAGTGTTTGGCACGTTCA+AGG + chr1_3:56926071-56926090 None:intergenic 40.0%
ATTTCCAAATCGATCGACGA+TGG - chr1_3:56926108-56926127 Msa0127530:three_prime_UTR 40.0%
TTTCCAAATCGATCGACGAT+GGG - chr1_3:56926109-56926128 Msa0127530:three_prime_UTR 40.0%
!! AGTTTGTTGCGTATCAAGAG+AGG - chr1_3:56926374-56926393 Msa0127530:intron 40.0%
!! TCTAAGGTTGATGATCTACG+TGG - chr1_3:56926433-56926452 Msa0127530:intron 40.0%
!! CTATTGTTTCGAGTTCGGTT+GGG - chr1_3:56926506-56926525 Msa0127530:intron 40.0%
TGCATCAAAATAGCACAACC+AGG + chr1_3:56926583-56926602 None:intergenic 40.0%
AGACTGTTTGAGGGAGATTA+TGG - chr1_3:56926844-56926863 Msa0127530:intron 40.0%
!! CAAAAAGATACGGCCTTGTT+TGG + chr1_3:56927025-56927044 None:intergenic 40.0%
! CAAACAAGGCCGTATCTTTT+TGG - chr1_3:56927023-56927042 Msa0127530:intron 40.0%
! TGTTTAAGGTAGACTGGGAA+TGG - chr1_3:56927262-56927281 Msa0127530:intron 40.0%
! GTTTAAGGTAGACTGGGAAT+GGG - chr1_3:56927263-56927282 Msa0127530:CDS 40.0%
!! CAAAAAGACAAGGCCTTGTT+TGG + chr1_3:56927551-56927570 None:intergenic 40.0%
!! CAAACAAGGCCTTGTCTTTT+TGG - chr1_3:56927549-56927568 Msa0127530:CDS 40.0%
CTGTTTAATGTGACTGGGAA+TGG - chr1_3:56927684-56927703 Msa0127530:CDS 40.0%
! GAGCATCTGAATTTTGAACC+TGG - chr1_3:56927817-56927836 Msa0127530:intron 40.0%
! TATCAGGTTCTATCGGTTGT+TGG - chr1_3:56927950-56927969 Msa0127530:CDS 40.0%
ACTTTCATGACTGAGACCAT+TGG + chr1_3:56927998-56928017 None:intergenic 40.0%
GAATCTTATGCTGACATTGG+TGG - chr1_3:56928034-56928053 Msa0127530:intron 40.0%
TATAATATGACCCCCTTAGG+TGG + chr1_3:56928145-56928164 None:intergenic 40.0%
CCATATAATATGACCCCCTT+AGG + chr1_3:56928148-56928167 None:intergenic 40.0%
CCTAAGGGGGTCATATTATA+TGG - chr1_3:56928145-56928164 Msa0127530:intron 40.0%
TTATATGGAGAACCTGGAAC+AGG - chr1_3:56928160-56928179 Msa0127530:intron 40.0%
AGTTCAAACCTTTGCAAGCA+AGG + chr1_3:56928191-56928210 None:intergenic 40.0%
! GCTATTTGTCTGTTGCTTAC+AGG - chr1_3:56928390-56928409 Msa0127530:intron 40.0%
!! TGTTGCTTACAGGTACTGAA+GGG - chr1_3:56928400-56928419 Msa0127530:intron 40.0%
TGAAAATCTCTGTGTTTGGG+GGG - chr1_3:56928472-56928491 Msa0127530:intron 40.0%
AAAAACATGCACACTCGCAA+AGG + chr1_3:56928605-56928624 None:intergenic 40.0%
! CTAACTGATAGTGCATGTGA+TGG + chr1_3:56928792-56928811 None:intergenic 40.0%
CATCACATGCACTATCAGTT+AGG - chr1_3:56928790-56928809 Msa0127530:CDS 40.0%
AGATGGTCCAAAACTTGTGA+GGG - chr1_3:56928910-56928929 Msa0127530:intron 40.0%
GTGGAGAACGTGAAATTCAA+AGG - chr1_3:56929159-56929178 Msa0127530:intron 40.0%
ATCTTCCTATCAATACGACC+AGG + chr1_3:56929293-56929312 None:intergenic 40.0%
! ACTAGCTGATGATGTCAACT+TGG - chr1_3:56929500-56929519 Msa0127530:intron 40.0%
ATGACGAAGGATGAATTCTC+TGG - chr1_3:56929534-56929553 Msa0127530:intron 40.0%
AAGGCAATATGTACTGAAGC+TGG - chr1_3:56929567-56929586 Msa0127530:intron 40.0%
ATATTATGCTAAGGGCGAGT+TGG - chr1_3:56929715-56929734 Msa0127530:intron 40.0%
TATTATGCTAAGGGCGAGTT+GGG - chr1_3:56929716-56929735 Msa0127530:intron 40.0%
!! AAATCGTGGAAAGTACTCCT+TGG - chr1_3:56930085-56930104 Msa0127530:intron 40.0%
CAAAAGAACAAAAGCAGGCT+TGG + chr1_3:56930126-56930145 None:intergenic 40.0%
!! CAAGCCTGCTTTTGTTCTTT+TGG - chr1_3:56930124-56930143 Msa0127530:intron 40.0%
! GGCATGTCTTGACTTTAGAA+TGG - chr1_3:56930262-56930281 Msa0127530:intron 40.0%
TCCTTTGCCTTCTTAAAGTC+GGG + chr1_3:56930527-56930546 None:intergenic 40.0%
ACAACGCAAACAAAAGGGTC+CGG - chr1_3:56926252-56926271 Msa0127530:three_prime_UTR 45.0%
TGAGGCTGTTAAAGCTTGAG+AGG - chr1_3:56926323-56926342 Msa0127530:CDS 45.0%
GAGGCTGTTAAAGCTTGAGA+GGG - chr1_3:56926324-56926343 Msa0127530:CDS 45.0%
GTTAAAGCTTGAGAGGGTGA+AGG - chr1_3:56926330-56926349 Msa0127530:CDS 45.0%
TCCAGATTCCCAACACTCAT+CGG + chr1_3:56926463-56926482 None:intergenic 45.0%
!! GCTATTGTTTCGAGTTCGGT+TGG - chr1_3:56926505-56926524 Msa0127530:intron 45.0%
! TTGGGCCGGAGTATTATGTT+GGG - chr1_3:56926524-56926543 Msa0127530:intron 45.0%
GATAAGGATCAATTGGAGCC+TGG - chr1_3:56926562-56926581 Msa0127530:intron 45.0%
ATTAGTCGCGAGACTGTTTG+AGG - chr1_3:56926834-56926853 Msa0127530:intron 45.0%
TTAGTCGCGAGACTGTTTGA+GGG - chr1_3:56926835-56926854 Msa0127530:intron 45.0%
GGAGGGTTGAGAATTAAGAG+TGG - chr1_3:56927079-56927098 Msa0127530:intron 45.0%
! TGCTGTTTGAGAGTTGAGAG+CGG - chr1_3:56927186-56927205 Msa0127530:intron 45.0%
ACTAGAGTGAATCGAGGCAT+CGG - chr1_3:56927229-56927248 Msa0127530:intron 45.0%
TACCAGCCACACTGTAATTG+CGG - chr1_3:56927354-56927373 Msa0127530:CDS 45.0%
TCTCAACCGCAATTACAGTG+TGG + chr1_3:56927363-56927382 None:intergenic 45.0%
GCTAACGAGCCAAAAAGACA+AGG + chr1_3:56927561-56927580 None:intergenic 45.0%
GATCAACTTCGTCTTGCAGA+AGG + chr1_3:56927976-56927995 None:intergenic 45.0%
! GCAAGACGAAGTTGATCCAA+TGG - chr1_3:56927979-56927998 Msa0127530:CDS 45.0%
CTCAGTCATGAAAGTCGAGA+AGG - chr1_3:56928003-56928022 Msa0127530:CDS 45.0%
TGGTTTAGATGCGCAGATTC+AGG - chr1_3:56928054-56928073 Msa0127530:intron 45.0%
TATTGGCATCAAGCCACCTA+AGG - chr1_3:56928129-56928148 Msa0127530:intron 45.0%
ATTGGCATCAAGCCACCTAA+GGG - chr1_3:56928130-56928149 Msa0127530:intron 45.0%
AGGAAAGACCTTGCTTGCAA+AGG - chr1_3:56928180-56928199 Msa0127530:intron 45.0%
!! CTGTTGCTTACAGGTACTGA+AGG - chr1_3:56928399-56928418 Msa0127530:intron 45.0%
CACCCCCAAAACAGTACATA+AGG + chr1_3:56928506-56928525 None:intergenic 45.0%
!!! CTTATGTACTGTTTTGGGGG+TGG - chr1_3:56928504-56928523 Msa0127530:intron 45.0%
! ACAGTTTGCTCTTCTGTCTG+TGG - chr1_3:56928638-56928657 Msa0127530:intron 45.0%
ATACATGCTCTTGTGCCTTC+AGG - chr1_3:56928817-56928836 Msa0127530:CDS 45.0%
GCTACATTCTTGCGTGTAGT+AGG - chr1_3:56928860-56928879 Msa0127530:CDS 45.0%
GAGATGGTCCAAAACTTGTG+AGG - chr1_3:56928909-56928928 Msa0127530:intron 45.0%
! GCTGCTGAACCCACAATTTT+AGG - chr1_3:56929013-56929032 Msa0127530:intron 45.0%
GAGTGAGCATCATACCTGTA+AGG + chr1_3:56929137-56929156 None:intergenic 45.0%
TACAGGTATGATGCTCACTC+AGG - chr1_3:56929137-56929156 Msa0127530:intron 45.0%
GAGTTGCTGAACCAGTTAGA+TGG - chr1_3:56929191-56929210 Msa0127530:intron 45.0%
! TACGACCTGGTCGTATTGAT+AGG - chr1_3:56929285-56929304 Msa0127530:intron 45.0%
! AAGCTGGCTTACTTGCTCTA+AGG - chr1_3:56929583-56929602 Msa0127530:intron 45.0%
! AGCTGGCTTACTTGCTCTAA+GGG - chr1_3:56929584-56929603 Msa0127530:intron 45.0%
ATTATGCTAAGGGCGAGTTG+GGG - chr1_3:56929717-56929736 Msa0127530:intron 45.0%
! TATTGGGTTAGGGTTGTCTG+TGG - chr1_3:56929793-56929812 Msa0127530:intron 45.0%
! ATTGGGTTAGGGTTGTCTGT+GGG - chr1_3:56929794-56929813 Msa0127530:intron 45.0%
TAGTTGTTGGAACTGGGAAG+AGG + chr1_3:56929942-56929961 None:intergenic 45.0%
!!! GGTGTTTTAAAGAGGCACCA+AGG + chr1_3:56930105-56930124 None:intergenic 45.0%
!!! GCAGGCTTGGTGTTTTAAAG+AGG + chr1_3:56930113-56930132 None:intergenic 45.0%
ATCATCATACTTTCCCGCGA+GGG - chr1_3:56930147-56930166 Msa0127530:intron 45.0%
ACACTGGAATCTTCCCAGTT+GGG + chr1_3:56930177-56930196 None:intergenic 45.0%
CTGGGTAGTCCTATATTGAC+AGG - chr1_3:56930225-56930244 Msa0127530:intron 45.0%
CTAAAGTCAAGACATGCCTC+AGG + chr1_3:56930260-56930279 None:intergenic 45.0%
! GACTCATCCCGACTTTAAGA+AGG - chr1_3:56930517-56930536 Msa0127530:CDS 45.0%
! TCCCGACTTTAAGAAGGCAA+AGG - chr1_3:56930523-56930542 Msa0127530:CDS 45.0%
!! AAGAAAGAAGGAGTGCCAGA+AGG - chr1_3:56930563-56930582 Msa0127530:CDS 45.0%
TGACCCATCGTCGATCGATT+TGG + chr1_3:56926115-56926134 None:intergenic 50.0%
AATCGATCGACGATGGGTCA+AGG - chr1_3:56926115-56926134 Msa0127530:three_prime_UTR 50.0%
!! TATCGCTGCCGTCTTGTTTC+CGG + chr1_3:56926180-56926199 None:intergenic 50.0%
CTCAGCTTGCACTTCGATAC+CGG + chr1_3:56926307-56926326 None:intergenic 50.0%
TCAAGAGAGGTTGAAGCCTC+AGG - chr1_3:56926387-56926406 Msa0127530:intron 50.0%
GGCGGAGGAAGATAGATCTA+AGG - chr1_3:56926417-56926436 Msa0127530:intron 50.0%
!! GATGAGTGTTGGGAATCTGG+AGG - chr1_3:56926462-56926481 Msa0127530:intron 50.0%
! GTTGGGCCGGAGTATTATGT+TGG - chr1_3:56926523-56926542 Msa0127530:intron 50.0%
TAGACTGGGAATGGGAGTTG+TGG - chr1_3:56927271-56927290 Msa0127530:CDS 50.0%
AACCGCAATTACAGTGTGGC+TGG + chr1_3:56927359-56927378 None:intergenic 50.0%
ATGCAGCGCAACTGAAGTGT+GGG - chr1_3:56927589-56927608 Msa0127530:CDS 50.0%
!! GGACGGTTGAGAGTTGATAG+TGG - chr1_3:56927610-56927629 Msa0127530:CDS 50.0%
GAAAGTCGAGAAGGCTCCTT+TGG - chr1_3:56928012-56928031 Msa0127530:CDS 50.0%
TTGGCATCAAGCCACCTAAG+GGG - chr1_3:56928131-56928150 Msa0127530:intron 50.0%
AGCAAGGTCTTTCCTGTTCC+AGG + chr1_3:56928175-56928194 None:intergenic 50.0%
ATCTCTGTGTTTGGGGGGAT+TGG - chr1_3:56928477-56928496 Msa0127530:intron 50.0%
TTGAGTTTGCCACAGCCTGA+AGG + chr1_3:56928835-56928854 None:intergenic 50.0%
TTGATGCGGTCGGTACAAAG+AGG - chr1_3:56928987-56929006 Msa0127530:intron 50.0%
AGGTATGATGCTCACTCAGG+TGG - chr1_3:56929140-56929159 Msa0127530:intron 50.0%
TCTAAGGGAACGCCGAATGA+AGG - chr1_3:56929599-56929618 Msa0127530:intron 50.0%
!! GAGTTGGGGTGGATTGGTTA+TGG - chr1_3:56929731-56929750 Msa0127530:intron 50.0%
TTGTTGGAACTGGGAAGAGG+TGG + chr1_3:56929939-56929958 None:intergenic 50.0%
GATCATCATACTTTCCCGCG+AGG - chr1_3:56930146-56930165 Msa0127530:intron 50.0%
GACACTGGAATCTTCCCAGT+TGG + chr1_3:56930178-56930197 None:intergenic 50.0%
TGACAGGATATCTGAGCCTG+AGG - chr1_3:56930241-56930260 Msa0127530:intron 50.0%
ACGATGGGTCAAGGAACTCC+CGG - chr1_3:56926124-56926143 Msa0127530:three_prime_UTR 55.0%
ATGAACCGACAAGGCCATCC+CGG - chr1_3:56926151-56926170 Msa0127530:three_prime_UTR 55.0%
ATTCGAACCAGCAGCACCAC+CGG - chr1_3:56926213-56926232 Msa0127530:three_prime_UTR 55.0%
TGTTTACGACCTACACGCGC+CGG + chr1_3:56926235-56926254 None:intergenic 55.0%
TTCGATACCGGAGTCACCGT+CGG + chr1_3:56926295-56926314 None:intergenic 55.0%
! CGGTATCGAAGTGCAAGCTG+AGG - chr1_3:56926305-56926324 Msa0127530:CDS 55.0%
AGAGAGGTTGAAGCCTCAGG+AGG - chr1_3:56926390-56926409 Msa0127530:intron 55.0%
GTTGAAGCCTCAGGAGGAGA+AGG - chr1_3:56926396-56926415 Msa0127530:intron 55.0%
!! GCCGATGAGTGTTGGGAATC+TGG - chr1_3:56926459-56926478 Msa0127530:intron 55.0%
!! TGTTTCGAGTTCGGTTGGGC+CGG - chr1_3:56926510-56926529 Msa0127530:intron 55.0%
GATGCAGCGCAACTGAAGTG+TGG - chr1_3:56927588-56927607 Msa0127530:CDS 55.0%
AGCGCAACTGAAGTGTGGGA+CGG - chr1_3:56927593-56927612 Msa0127530:CDS 55.0%
TGGCATCAAGCCACCTAAGG+GGG - chr1_3:56928132-56928151 Msa0127530:intron 55.0%
GATCCAGCTTTGCTACGACC+TGG - chr1_3:56929272-56929291 Msa0127530:intron 55.0%
GTTAGGGTTGTCTGTGGGTG+TGG - chr1_3:56929799-56929818 Msa0127530:intron 55.0%
TCATACTTTCCCGCGAGGGA+TGG - chr1_3:56930151-56930170 Msa0127530:intron 55.0%
ATGGGTCAAGGAACTCCCGG+CGG - chr1_3:56926127-56926146 Msa0127530:three_prime_UTR 60.0%
CTTGTTTCCGGTCACCGGGA+TGG + chr1_3:56926168-56926187 None:intergenic 60.0%
!! CCGTCTTGTTTCCGGTCACC+GGG + chr1_3:56926172-56926191 None:intergenic 60.0%
CCCGGTGACCGGAAACAAGA+CGG - chr1_3:56926169-56926188 Msa0127530:three_prime_UTR 60.0%
!! GCCGTCTTGTTTCCGGTCAC+CGG + chr1_3:56926173-56926192 None:intergenic 60.0%
GGTAACCGTGAAGCGGCATC+CGG + chr1_3:56926274-56926293 None:intergenic 60.0%
! TGCCGCTTCACGGTTACCGA+CGG - chr1_3:56926276-56926295 Msa0127530:exon 60.0%
CACCGTCGGTAACCGTGAAG+CGG + chr1_3:56926281-56926300 None:intergenic 60.0%
ACGGTTACCGACGGTGACTC+CGG - chr1_3:56926285-56926304 Msa0127530:CDS 60.0%
GAAGCCTCAGGAGGAGAAGG+CGG - chr1_3:56926399-56926418 Msa0127530:intron 60.0%
GTGGCTCGCCGATGAGTGTT+GGG - chr1_3:56926452-56926471 Msa0127530:intron 60.0%
GTGACTGGGAATGGGAGTCG+AGG - chr1_3:56927693-56927712 Msa0127530:CDS 60.0%
GCTCTTGTGCCTTCAGGCTG+TGG - chr1_3:56928823-56928842 Msa0127530:CDS 60.0%
CGACCAGGTCGTAGCAAAGC+TGG + chr1_3:56929278-56929297 None:intergenic 60.0%
! ATGCTAAGGGCGAGTTGGGG+TGG - chr1_3:56929720-56929739 Msa0127530:intron 60.0%
! AAGGGCGAGTTGGGGTGGAT+TGG - chr1_3:56929725-56929744 Msa0127530:intron 60.0%
!! CCTTGTCGGTTCATGCCGCC+GGG + chr1_3:56926145-56926164 None:intergenic 65.0%
!! GCCTTGTCGGTTCATGCCGC+CGG + chr1_3:56926146-56926165 None:intergenic 65.0%
!! GGTCACCGGGATGGCCTTGT+CGG + chr1_3:56926159-56926178 None:intergenic 65.0%
GACAAGGCCATCCCGGTGAC+CGG - chr1_3:56926158-56926177 Msa0127530:three_prime_UTR 65.0%
TTACGACCTACACGCGCCGG+TGG + chr1_3:56926232-56926251 None:intergenic 65.0%
! AGGGTCCGGATGCCGCTTCA+CGG - chr1_3:56926266-56926285 Msa0127530:exon 65.0%
TCCTCCGCCTTCTCCTCCTG+AGG + chr1_3:56926406-56926425 None:intergenic 65.0%
CGTGGCTCGCCGATGAGTGT+TGG - chr1_3:56926451-56926470 Msa0127530:intron 65.0%
CCCGGCGGCATGAACCGACA+AGG - chr1_3:56926142-56926161 Msa0127530:three_prime_UTR 70.0%
GCCTCAGGAGGAGAAGGCGG+AGG - chr1_3:56926402-56926421 Msa0127530:intron 70.0%
CCAGTTGGGCCATCCCTCGC+GGG + chr1_3:56930163-56930182 None:intergenic 70.0%
CCCAGTTGGGCCATCCCTCG+CGG + chr1_3:56930164-56930183 None:intergenic 70.0%
CCGCGAGGGATGGCCCAACT+GGG - chr1_3:56930161-56930180 Msa0127530:intron 70.0%
!! ACACGCGCCGGTGGTGCTGC+TGG + chr1_3:56926223-56926242 None:intergenic 75.0%
GCAGCACCACCGGCGCGTGT+AGG - chr1_3:56926223-56926242 Msa0127530:three_prime_UTR 75.0%
CCCGCGAGGGATGGCCCAAC+TGG - chr1_3:56930160-56930179 Msa0127530:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56926028 56930855 56926028 ID=Msa0127530;Name=Msa0127530
chr1_3 mRNA 56926028 56930855 56926028 ID=Msa0127530-mRNA-1;Parent=Msa0127530;Name=Msa0127530-mRNA-1;_AED=0.07;_eAED=0.07;_QI=99|1|1|1|1|1|6|257|446
chr1_3 exon 56926028 56926368 56926028 ID=Msa0127530-mRNA-1:exon:18074;Parent=Msa0127530-mRNA-1
chr1_3 exon 56927263 56927403 56927263 ID=Msa0127530-mRNA-1:exon:18073;Parent=Msa0127530-mRNA-1
chr1_3 exon 56927525 56927741 56927525 ID=Msa0127530-mRNA-1:exon:18072;Parent=Msa0127530-mRNA-1
chr1_3 exon 56927875 56928044 56927875 ID=Msa0127530-mRNA-1:exon:18071;Parent=Msa0127530-mRNA-1
chr1_3 exon 56928682 56928927 56928682 ID=Msa0127530-mRNA-1:exon:18070;Parent=Msa0127530-mRNA-1
chr1_3 exon 56930274 56930855 56930274 ID=Msa0127530-mRNA-1:exon:18069;Parent=Msa0127530-mRNA-1
chr1_3 five_prime_UTR 56930757 56930855 56930757 ID=Msa0127530-mRNA-1:five_prime_utr;Parent=Msa0127530-mRNA-1
chr1_3 CDS 56930274 56930756 56930274 ID=Msa0127530-mRNA-1:cds;Parent=Msa0127530-mRNA-1
chr1_3 CDS 56928682 56928927 56928682 ID=Msa0127530-mRNA-1:cds;Parent=Msa0127530-mRNA-1
chr1_3 CDS 56927875 56928044 56927875 ID=Msa0127530-mRNA-1:cds;Parent=Msa0127530-mRNA-1
chr1_3 CDS 56927525 56927741 56927525 ID=Msa0127530-mRNA-1:cds;Parent=Msa0127530-mRNA-1
chr1_3 CDS 56927263 56927403 56927263 ID=Msa0127530-mRNA-1:cds;Parent=Msa0127530-mRNA-1
chr1_3 CDS 56926285 56926368 56926285 ID=Msa0127530-mRNA-1:cds;Parent=Msa0127530-mRNA-1
chr1_3 three_prime_UTR 56926028 56926284 56926028 ID=Msa0127530-mRNA-1:three_prime_utr;Parent=Msa0127530-mRNA-1
Gene Sequence

>Msa0127530

ATGGGTCAAGGAACTCCCGGCGGCATGAACCGACAAGGCCATCCCGGTGACCGGAAACAAGACGGCAGCGATAAAAAAGAAAAGAAATTCGAACCAGCAGCACCACCGGCGCGTGTAGGTCGTAAACAACGCAAACAAAAGGGTCCGGATGCCGCTTCACGGTTACCGACGGTGACTCCGGTATCGAAGTGCAAGCTGAGGCTGTTAAAGCTTGAGAGGGTGAAGGATTATTTGTTGATGGAGGAAGAGTTTGTTGCGTATCAAGAGAGGTTGAAGCCTCAGGAGGAGAAGGCGGAGGAAGATAGATCTAAGGTTGATGATCTACGTGGCTCGCCGATGAGTGTTGGGAATCTGGAGGAATTGATTGATGAGAATCATGCTATTGTTTCGAGTTCGGTTGGGCCGGAGTATTATGTTGGGATTTTATCTTTTGTTGATAAGGATCAATTGGAGCCTGGTTGTGCTATTTTGATGCATAATAAGGTTCTATCGGTTGTTGGCCTTCTGCAAGACGAAGTTGATCCAATGGTCTCAGTCATGAAAGTCGAGAAGGCTCCTTTGGAATCTTATGCTGACATTGGTGGTTTAGATGCGCAGATTCAGGAAATTAAAGAGGCAGTTGAACTACCCCTTACACATCCTGAACTATATGAAGATATTGGCATCAAGCCACCTAAGGGGGTCATATTATATGGAGAACCTGGAACAGGAAAGACCTTGCTTGCAAAGGCTGTGGCAAACTCAACATCAGCTACATTCTTGCGTGTAGTAGGTAGTGAATTGATACAAAAGTACTTGGGAGATGGTCCAAAACTTGTGAGGGAACTTTTCAGAGTTGCCGATGATCTTTCTCCTGCTATTGTTTTCATTGATGAAATTGATGCGGTCGGTACAAAGAGGTATGATGCTCACTCAGGTGGAGAACGTGAAATTCAAAGGACTATGTTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTAAAAGTGATTCTGGCTACCAACAGAATTGAAAGTCTTGATCCAGCTTTGCTACGACCTGGTCGTATTGATAGGAAGATTGAATTTCCTCTTCCTGATATCAAAACAAGAAGACGTATTTTCCAGATACACACATCAAGGATGACACTAGCTGATGATGTCAACTTGGAAGAATTTGTTATGACGAAGGATGAATTCTCTGGAGCTGATATAAAGGCAATATGTACTGAAGCTGGCTTACTTGCTCTAAGGGAACGCCGAATGAAGGTGACTCATCCCGACTTTAAGAAGGCAAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGAGTGCCAGAAGGACTATATATGTGA
Protein sequence

>Msa0127530

MGQGTPGGMNRQGHPGDRKQDGSDKKEKKFEPAAPPARVGRKQRKQKGPDAASRLPTVTPVSKCKLRLLKLERVKDYLLMEEEFVAYQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPAIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKDKVMFKKKEGVPEGLYM*