Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122870 | XP_024635315.1 | 99.525 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122870 | sp|Q6K9N6|SUCB_ORYSJ | 86.158 | 419 | 58 | 0 | 1 | 419 | 1 | 419 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122870 | A0A072VL01 | 99.525 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 0.0 | 848 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051970 | Msa0122870 | 0.805914 | 1.060546e-49 | -8.615850e-47 |
| Msa0075210 | Msa0122870 | 0.999400 | 1.007000e-308 | -8.615850e-47 |
| Msa0122870 | Msa0127530 | 0.824807 | 6.607485e-54 | -8.615850e-47 |
| Msa0122870 | Msa0167400 | 0.860674 | 1.752140e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122870 | MtrunA17_Chr1g0183491 | 99.525 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122870 | AT2G20420.1 | 85.885 | 418 | 59 | 0 | 2 | 419 | 1 | 418 | 0.0 | 747 |
Find 105 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGAAAGTGTTTACTTAT+TGG | 0.141400 | 1_3:+49718910 | None:intergenic |
| TTCAAATTTGAATGTTTAAT+TGG | 0.150084 | 1_3:-49718703 | Msa0122870:three_prime_UTR |
| GAAGTTTGAATATCTCTTTC+TGG | 0.175075 | 1_3:+49721210 | None:intergenic |
| GACCATTGTTGTTAGGGTTT+TGG | 0.196821 | 1_3:+49723897 | None:intergenic |
| GCTTATTATTGCTTGTAAAA+AGG | 0.205295 | 1_3:-49721687 | Msa0122870:CDS |
| AAGGCAGATTTAAATTATAT+TGG | 0.212296 | 1_3:-49720274 | Msa0122870:CDS |
| TATAGGTCTTTCTTCAACTA+TGG | 0.221689 | 1_3:+49723961 | None:intergenic |
| TGAGGATCTTCAATTTATTT+TGG | 0.228148 | 1_3:-49718735 | Msa0122870:three_prime_UTR |
| ATTGGGTTAGATGGAGAAAT+TGG | 0.248780 | 1_3:-49720256 | Msa0122870:CDS |
| TTAAATTATATTGGGTTAGA+TGG | 0.259385 | 1_3:-49720265 | Msa0122870:CDS |
| ATTTCCAGACATGATTATTA+AGG | 0.260056 | 1_3:-49721633 | Msa0122870:intron |
| TGATTCTGACTGCACTCTTT+TGG | 0.271327 | 1_3:-49721409 | Msa0122870:CDS |
| TTCCACATTATTGTTCAATT+AGG | 0.296568 | 1_3:-49718894 | Msa0122870:three_prime_UTR |
| TGATTTCTATCAGCCACTTT+AGG | 0.310229 | 1_3:+49721471 | None:intergenic |
| TCTCTCTTACATTTCAAGAT+AGG | 0.312462 | 1_3:-49718848 | Msa0122870:three_prime_UTR |
| ATTAATAACGGCTGAAGATT+TGG | 0.314200 | 1_3:-49719103 | Msa0122870:CDS |
| GCTGAATTGATGAGCAAATA+TGG | 0.315960 | 1_3:-49723644 | Msa0122870:CDS |
| TGACAAAGTGAAGGCGATTT+TGG | 0.316363 | 1_3:-49719839 | Msa0122870:CDS |
| AGGCAGATTTAAATTATATT+GGG | 0.326373 | 1_3:-49720273 | Msa0122870:CDS |
| ATCCTCTGACCATTGTTGTT+AGG | 0.334086 | 1_3:+49723890 | None:intergenic |
| ACCACCGACATCCAGAAAAT+TGG | 0.337667 | 1_3:+49720162 | None:intergenic |
| CCTTCAAGACGAACTATTAC+TGG | 0.352447 | 1_3:+49719306 | None:intergenic |
| ATCTTACATTTGGTTCCATT+TGG | 0.353516 | 1_3:-49718660 | Msa0122870:three_prime_UTR |
| TTAGCCGGTGGACGAGGATT+GGG | 0.369874 | 1_3:-49723157 | Msa0122870:CDS |
| ACCGGGGAATGCATCTTTGA+TGG | 0.376142 | 1_3:+49723568 | None:intergenic |
| AAATAGTGTTGTAACTAAAC+TGG | 0.376409 | 1_3:+49719016 | None:intergenic |
| TGCAAAGGTTGTTGATGGTT+TGG | 0.380876 | 1_3:-49721496 | Msa0122870:CDS |
| TGAGGAAACCGCTACGCCTC+TGG | 0.390330 | 1_3:+49723610 | None:intergenic |
| TCTCAACATCCACGAGTATC+AGG | 0.395102 | 1_3:-49723800 | Msa0122870:intron |
| TCCTCTGACCATTGTTGTTA+GGG | 0.398230 | 1_3:+49723891 | None:intergenic |
| TACAAAACAGTCAGGTCCTC+AGG | 0.399292 | 1_3:-49722822 | Msa0122870:CDS |
| TTCTGCAAGGTCTTCAATGC+TGG | 0.400023 | 1_3:+49721658 | None:intergenic |
| TTTAGCCGGTGGACGAGGAT+TGG | 0.412502 | 1_3:-49723158 | Msa0122870:CDS |
| CTCTCTCCGTCGCCGGCACA+TGG | 0.417809 | 1_3:-49723843 | Msa0122870:CDS |
| GAACTTGATTCGATCGATAT+AGG | 0.423710 | 1_3:+49723944 | None:intergenic |
| CCAGTAATAGTTCGTCTTGA+AGG | 0.437190 | 1_3:-49719306 | Msa0122870:CDS |
| AATGTACTTTGCTATAACTC+TGG | 0.458552 | 1_3:-49721908 | Msa0122870:CDS |
| CAAACCTTAATAATCATGTC+TGG | 0.470096 | 1_3:+49721629 | None:intergenic |
| GTTGAACATGGTTCACCGAT+TGG | 0.478616 | 1_3:-49718778 | Msa0122870:three_prime_UTR |
| GATGCTGCAAAGGTTGTTGA+TGG | 0.481004 | 1_3:-49721501 | Msa0122870:CDS |
| GGCTGCATGGTGAATGGAGC+AGG | 0.482177 | 1_3:-49720235 | Msa0122870:CDS |
| GGATCGTAAGACTGCTGGTC+CGG | 0.485726 | 1_3:-49721887 | Msa0122870:intron |
| TAGCATCAGCAGCTACTAGT+TGG | 0.488406 | 1_3:+49721264 | None:intergenic |
| TTATCAGCTGTCTCCGCCAT+GGG | 0.493856 | 1_3:+49721287 | None:intergenic |
| CGCCTTCACTTTGTCATCAG+CGG | 0.496140 | 1_3:+49719846 | None:intergenic |
| GGATCAGGTGGCTGCTGCAA+AGG | 0.496306 | 1_3:-49720293 | Msa0122870:intron |
| GTTATCAGCTGTCTCCGCCA+TGG | 0.498469 | 1_3:+49721286 | None:intergenic |
| GAAGGCACCAATGTTGATCA+AGG | 0.499839 | 1_3:-49719288 | Msa0122870:CDS |
| AATAGTGAATGCTGCAAAGC+AGG | 0.513542 | 1_3:-49719770 | Msa0122870:intron |
| GCCATCAAAGATGCATTCCC+CGG | 0.516361 | 1_3:-49723569 | Msa0122870:CDS |
| GAAATTGGCTGCATGGTGAA+TGG | 0.525680 | 1_3:-49720241 | Msa0122870:CDS |
| GGTTCACCGATTGGACAAAA+CGG | 0.526837 | 1_3:-49718769 | Msa0122870:three_prime_UTR |
| GAGGAAACCGCTACGCCTCT+GGG | 0.528679 | 1_3:+49723611 | None:intergenic |
| AAAATTCTAGGGCGTAGTAT+TGG | 0.534913 | 1_3:-49724012 | Msa0122870:five_prime_UTR |
| GTTACAAATTATTGACGAGA+AGG | 0.535912 | 1_3:-49718986 | Msa0122870:three_prime_UTR |
| CTGTTGATTCTGCCATGTGC+CGG | 0.536899 | 1_3:+49723831 | None:intergenic |
| TGATGGTTTGGCTCCTAAAG+TGG | 0.542936 | 1_3:-49721484 | Msa0122870:CDS |
| ACTCTGGATCGTAAGACTGC+TGG | 0.543398 | 1_3:-49721892 | Msa0122870:CDS |
| AAGTGGTATGGCATTAATAA+CGG | 0.545339 | 1_3:-49719115 | Msa0122870:CDS |
| TAGCCGGTGGACGAGGATTG+GGG | 0.546458 | 1_3:-49723156 | Msa0122870:CDS |
| TCTCGCTCTCTCTCCGTCGC+CGG | 0.547633 | 1_3:-49723850 | Msa0122870:CDS |
| AAATGCTTTAATAGCCACTA+CGG | 0.558659 | 1_3:+49718933 | None:intergenic |
| GTTTCAACAGGAAAGTGGTA+TGG | 0.559539 | 1_3:-49719127 | Msa0122870:intron |
| AGTCCCCAATCCTCGTCCAC+CGG | 0.563023 | 1_3:+49723153 | None:intergenic |
| GGTTTATGCATGTGATTGCA+TGG | 0.563716 | 1_3:-49718873 | Msa0122870:three_prime_UTR |
| TGGTGCTGCCTCTGAAAACC+AGG | 0.565708 | 1_3:-49720143 | Msa0122870:intron |
| TTACAAATTATTGACGAGAA+GGG | 0.567596 | 1_3:-49718985 | Msa0122870:three_prime_UTR |
| ATACTAGTTACAAAACAGTC+AGG | 0.567777 | 1_3:-49722830 | Msa0122870:CDS |
| TGAATGTTTCAACAGGAAAG+TGG | 0.569848 | 1_3:-49719132 | Msa0122870:intron |
| ATTCTGCCATGTGCCGGCGA+CGG | 0.571062 | 1_3:+49723837 | None:intergenic |
| GACCAGGTTGAAGATATAGC+TGG | 0.576329 | 1_3:-49723088 | Msa0122870:intron |
| AAGTGTGATGTTATAGCAAG+TGG | 0.576361 | 1_3:-49719793 | Msa0122870:CDS |
| ATGGATATAATTAAGTTGCA+TGG | 0.580190 | 1_3:-49720196 | Msa0122870:CDS |
| CAACTTAATTATATCCATTG+TGG | 0.580693 | 1_3:+49720201 | None:intergenic |
| AACCTAATTGAACAATAATG+TGG | 0.581936 | 1_3:+49718892 | None:intergenic |
| TACTGATGAAGATGCTGCAA+AGG | 0.593207 | 1_3:-49721511 | Msa0122870:CDS |
| ACAAAACAGTCAGGTCCTCA+GGG | 0.599578 | 1_3:-49722821 | Msa0122870:CDS |
| GGATTGGGGACTTTCAAAAG+TGG | 0.603342 | 1_3:-49723142 | Msa0122870:CDS |
| ACTTCGTGATACAACACAAG+AGG | 0.604434 | 1_3:-49721192 | Msa0122870:CDS |
| TAACGTTCCCAGAGGCGTAG+CGG | 0.610301 | 1_3:-49723618 | Msa0122870:CDS |
| TCTTTCACAGATCAATCCCA+TGG | 0.610578 | 1_3:-49721303 | Msa0122870:intron |
| GCATTTAACTATACCTCTCG+AGG | 0.610638 | 1_3:+49721167 | None:intergenic |
| TCAAGGGAAAAGCATTCTGA+AGG | 0.611993 | 1_3:-49719271 | Msa0122870:intron |
| TATCTCTTTCTGGCGATATG+CGG | 0.620041 | 1_3:+49721220 | None:intergenic |
| AAAATACAGTCTGTTGAACA+TGG | 0.620909 | 1_3:-49718790 | Msa0122870:three_prime_UTR |
| AGATGGAGAAATTGGCTGCA+TGG | 0.622314 | 1_3:-49720248 | Msa0122870:CDS |
| AAGGCACCAATGTTGATCAA+GGG | 0.623746 | 1_3:-49719287 | Msa0122870:CDS |
| CCGACATCCAGAAAATTGGC+AGG | 0.624013 | 1_3:+49720166 | None:intergenic |
| AACCGCTGATGACAAAGTGA+AGG | 0.632167 | 1_3:-49719848 | Msa0122870:CDS |
| TGCATTCCCCGGTCAAAACG+AGG | 0.636965 | 1_3:-49723558 | Msa0122870:intron |
| AGGGTTAGCAATGGCCACAA+TGG | 0.643855 | 1_3:-49720215 | Msa0122870:CDS |
| CGAGAGGGACCTGATACTCG+TGG | 0.643858 | 1_3:+49723791 | None:intergenic |
| ACCCTAACAACAATGGTCAG+AGG | 0.649848 | 1_3:-49723892 | Msa0122870:exon |
| GAATGGAGCAGGGTTAGCAA+TGG | 0.649914 | 1_3:-49720224 | Msa0122870:CDS |
| GCACATTGTTAAGACTGACC+AGG | 0.652128 | 1_3:-49723104 | Msa0122870:CDS |
| TACCAGCTATATCTTCAACC+TGG | 0.653753 | 1_3:+49723086 | None:intergenic |
| ATCCAAAACCCTAACAACAA+TGG | 0.659235 | 1_3:-49723899 | Msa0122870:exon |
| TCTTCTCATTGAATCCGTAG+TGG | 0.667087 | 1_3:-49718947 | Msa0122870:three_prime_UTR |
| GATACTCGTGGATGTTGAGA+CGG | 0.670255 | 1_3:+49723803 | None:intergenic |
| AACACAAGAGGATCCTCGAG+AGG | 0.699355 | 1_3:-49721180 | Msa0122870:intron |
| ACTCGTGGATGTTGAGACGG+CGG | 0.714705 | 1_3:+49723806 | None:intergenic |
| GATATAATTAAGTTGCATGG+CGG | 0.729232 | 1_3:-49720193 | Msa0122870:CDS |
| GCTGCATGGTGAATGGAGCA+GGG | 0.729760 | 1_3:-49720234 | Msa0122870:CDS |
| TTCACAGATCAATCCCATGG+CGG | 0.738791 | 1_3:-49721300 | Msa0122870:intron |
| TATGGAGTTAACGTTCCCAG+AGG | 0.766145 | 1_3:-49723626 | Msa0122870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAATAAAATAAAAAA+AGG | + | chr1_3:49723235-49723254 | None:intergenic | 0.0% |
| !! | GAAATAAAAATAAAAATTCT+AGG | - | chr1_3:49718601-49718620 | Msa0122870:three_prime_UTR | 10.0% |
| !! | AATAAATTAATACTTATGAA+TGG | + | chr1_3:49719653-49719672 | None:intergenic | 10.0% |
| !! | ATAAAAATAAAAAATTCAGT+TGG | + | chr1_3:49720324-49720343 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTTTAACTAATTG+AGG | - | chr1_3:49719195-49719214 | Msa0122870:intron | 15.0% |
| !!! | ATTAAAACATTTTGCAATTA+TGG | + | chr1_3:49719239-49719258 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTGATTTTTTTT+TGG | - | chr1_3:49719720-49719739 | Msa0122870:intron | 15.0% |
| !!! | GTATGCATTTTAAAATATAA+TGG | + | chr1_3:49720547-49720566 | None:intergenic | 15.0% |
| !! | GTATGTAAAAAAATAAAAAG+TGG | + | chr1_3:49720583-49720602 | None:intergenic | 15.0% |
| !!! | AAAGTAAGATTTTAATAATC+AGG | + | chr1_3:49722239-49722258 | None:intergenic | 15.0% |
| !! | ATTATATAAAACTGCTAATA+AGG | + | chr1_3:49723012-49723031 | None:intergenic | 15.0% |
| !!! | TTATTAGCAGTTTTATATAA+TGG | - | chr1_3:49723011-49723030 | Msa0122870:intron | 15.0% |
| !!! | TTTTATATAATGGTTTTGTT+TGG | - | chr1_3:49723021-49723040 | Msa0122870:intron | 15.0% |
| !!! | TTATTTTATTTTTAAAGCAC+TGG | - | chr1_3:49723239-49723258 | Msa0122870:intron | 15.0% |
| !!! | TATTTTATTTTTAAAGCACT+GGG | - | chr1_3:49723240-49723259 | Msa0122870:intron | 15.0% |
| !! | TTCAAATTTGAATGTTTAAT+TGG | - | chr1_3:49723922-49723941 | Msa0122870:five_prime_UTR | 15.0% |
| !!! | TAAAGTTTTTATCTTACATT+TGG | - | chr1_3:49723955-49723974 | Msa0122870:five_prime_UTR | 15.0% |
| !!! | TTTTCAATTTTCGTGAAATT+AGG | - | chr1_3:49718956-49718975 | Msa0122870:three_prime_UTR | 20.0% |
| !!! | TTTCAATTTTCGTGAAATTA+GGG | - | chr1_3:49718957-49718976 | Msa0122870:three_prime_UTR | 20.0% |
| !!! | AAAATGTTTTAATGCATGTT+TGG | - | chr1_3:49719246-49719265 | Msa0122870:intron | 20.0% |
| !!! | AGTATAACCTTTAAAATTCA+CGG | + | chr1_3:49719307-49719326 | None:intergenic | 20.0% |
| !! | CATCTTATATAGAATTAGAA+AGG | + | chr1_3:49719625-49719644 | None:intergenic | 20.0% |
| !! | TATTCAATTTGAATTTAGAG+AGG | - | chr1_3:49719669-49719688 | Msa0122870:intron | 20.0% |
| !!! | ACTTGATAATCTAGATTTTT+TGG | - | chr1_3:49719706-49719725 | Msa0122870:intron | 20.0% |
| !!! | TTTTAGAGAACAAAATTGTT+TGG | + | chr1_3:49719899-49719918 | None:intergenic | 20.0% |
| !!! | AAAGTTTAGTCATTTTTTTC+TGG | - | chr1_3:49720100-49720119 | Msa0122870:intron | 20.0% |
| !! | TATACACTTAAAACCATTTA+TGG | - | chr1_3:49720381-49720400 | Msa0122870:intron | 20.0% |
| !! | TTAAAACCATTTATGGTATT+TGG | - | chr1_3:49720388-49720407 | Msa0122870:intron | 20.0% |
| !! | GTACATATAGATATAACAAT+TGG | + | chr1_3:49720422-49720441 | None:intergenic | 20.0% |
| !! | CTGTAAAAAAATTAGACAAT+TGG | + | chr1_3:49720662-49720681 | None:intergenic | 20.0% |
| !!! | CAATTGTCTAATTTTTTTAC+AGG | - | chr1_3:49720660-49720679 | Msa0122870:intron | 20.0% |
| !! | TTATTATTGGTCAAATTTAG+AGG | + | chr1_3:49720875-49720894 | None:intergenic | 20.0% |
| !! | CTTATTATTGCTTGTAAAAA+GGG | - | chr1_3:49720939-49720958 | Msa0122870:intron | 20.0% |
| !!! | ATTTCTGTTTTATATTACAC+AGG | - | chr1_3:49721487-49721506 | Msa0122870:CDS | 20.0% |
| !! | CAATATAAGTTATTATTGTG+TGG | + | chr1_3:49721716-49721735 | None:intergenic | 20.0% |
| !! | AAGGCAGATTTAAATTATAT+TGG | - | chr1_3:49722351-49722370 | Msa0122870:intron | 20.0% |
| !! | AGGCAGATTTAAATTATATT+GGG | - | chr1_3:49722352-49722371 | Msa0122870:intron | 20.0% |
| !!! | TTAAATTATATTGGGTTAGA+TGG | - | chr1_3:49722360-49722379 | Msa0122870:intron | 20.0% |
| !!! | AGAATAAAGCTGTTTTTAAA+CGG | + | chr1_3:49722923-49722942 | None:intergenic | 20.0% |
| !!! | TTTGAAGCATTTTTATATAG+TGG | - | chr1_3:49723049-49723068 | Msa0122870:intron | 20.0% |
| !!! | TTTTATATAGTGGTTTTGTT+TGG | - | chr1_3:49723059-49723078 | Msa0122870:intron | 20.0% |
| !!! | ATTTTATTTTTAAAGCACTG+GGG | - | chr1_3:49723241-49723260 | Msa0122870:intron | 20.0% |
| !! | TGAAAAAAAACTTTACCAAA+TGG | + | chr1_3:49723983-49724002 | None:intergenic | 20.0% |
| !!! | TTTGGTAAAGTTTTTTTTCA+AGG | - | chr1_3:49723983-49724002 | Msa0122870:five_prime_UTR | 20.0% |
| ! | TATGGAAAACTTCATAACAA+AGG | + | chr1_3:49719221-49719240 | None:intergenic | 25.0% |
| !! | TAGCTTTTACAAAATCACAA+TGG | - | chr1_3:49719330-49719349 | Msa0122870:intron | 25.0% |
| ! | TATATAGAATTAGAAAGGCA+TGG | + | chr1_3:49719620-49719639 | None:intergenic | 25.0% |
| ! | TTTGAATTTAGAGAGGTTAT+AGG | - | chr1_3:49719676-49719695 | Msa0122870:intron | 25.0% |
| !!! | TTGGTGATTTTTTTTTGGTT+TGG | - | chr1_3:49719725-49719744 | Msa0122870:intron | 25.0% |
| !!! | TTTGTCATTGTTGTTTTTTC+AGG | - | chr1_3:49719756-49719775 | Msa0122870:intron | 25.0% |
| !!! | TTGTCATTGTTGTTTTTTCA+GGG | - | chr1_3:49719757-49719776 | Msa0122870:intron | 25.0% |
| !! | TTCTCTAAAAATCGAAATTC+TGG | - | chr1_3:49719909-49719928 | Msa0122870:intron | 25.0% |
| !!! | ATGGTTTTAAGTGTATAACT+TGG | + | chr1_3:49720378-49720397 | None:intergenic | 25.0% |
| ! | AAAAACCACTTAGAATCTAA+CGG | + | chr1_3:49720447-49720466 | None:intergenic | 25.0% |
| ! | ATACGTAGAATATATATGCA+AGG | - | chr1_3:49720599-49720618 | Msa0122870:intron | 25.0% |
| ! | TACGTAGAATATATATGCAA+GGG | - | chr1_3:49720600-49720619 | Msa0122870:intron | 25.0% |
| ! | TAAAGCTAATATACTGACAT+AGG | + | chr1_3:49720771-49720790 | None:intergenic | 25.0% |
| ! | GCTTATTATTGCTTGTAAAA+AGG | - | chr1_3:49720938-49720957 | Msa0122870:intron | 25.0% |
| ! | ATTTCCAGACATGATTATTA+AGG | - | chr1_3:49720992-49721011 | Msa0122870:intron | 25.0% |
| !! | AACATCTTTTGTAACAATCA+GGG | - | chr1_3:49721654-49721673 | Msa0122870:CDS | 25.0% |
| !! | CATTTTATTCAGGACAATTT+TGG | + | chr1_3:49721862-49721881 | None:intergenic | 25.0% |
| ! | AATTGTCCTGAATAAAATGT+TGG | - | chr1_3:49721863-49721882 | Msa0122870:intron | 25.0% |
| ! | AAATACATCATGTGAAATCT+TGG | + | chr1_3:49722213-49722232 | None:intergenic | 25.0% |
| ! | AACTGATGATAAGAAACAAA+AGG | + | chr1_3:49722268-49722287 | None:intergenic | 25.0% |
| !!! | TGTGTCTTTTAACTTTTTTC+TGG | - | chr1_3:49722311-49722330 | Msa0122870:intron | 25.0% |
| !!! | TTTTAACTTTTTTCTGGATC+AGG | - | chr1_3:49722317-49722336 | Msa0122870:intron | 25.0% |
| ! | CAACTTAATTATATCCATTG+TGG | + | chr1_3:49722427-49722446 | None:intergenic | 25.0% |
| !! | ATGGATATAATTAAGTTGCA+TGG | - | chr1_3:49722429-49722448 | Msa0122870:intron | 25.0% |
| ! | CATATCAATCTTATTGATGT+AGG | + | chr1_3:49722549-49722568 | None:intergenic | 25.0% |
| ! | ATTTGAACAAAAACATCTCA+AGG | + | chr1_3:49722712-49722731 | None:intergenic | 25.0% |
| ! | TTACTGTAATTATGTGAATC+AGG | - | chr1_3:49722732-49722751 | Msa0122870:intron | 25.0% |
| ! | TGGAACTATTTGATATTGAA+AGG | - | chr1_3:49723079-49723098 | Msa0122870:intron | 25.0% |
| !!! | TTTAATTTTGATCTATGACG+TGG | - | chr1_3:49723141-49723160 | Msa0122870:CDS | 25.0% |
| !!! | TTAATTTTGATCTATGACGT+GGG | - | chr1_3:49723142-49723161 | Msa0122870:CDS | 25.0% |
| !!! | TTCTCTTGCTGTTATTTTTT+AGG | - | chr1_3:49723282-49723301 | Msa0122870:intron | 25.0% |
| !!! | ACAAACCATCTCTTTTAAAA+AGG | - | chr1_3:49723406-49723425 | Msa0122870:intron | 25.0% |
| ! | AAATAGTGTTGTAACTAAAC+TGG | + | chr1_3:49723612-49723631 | None:intergenic | 25.0% |
| ! | TTACAAATTATTGACGAGAA+GGG | - | chr1_3:49723640-49723659 | Msa0122870:CDS | 25.0% |
| ! | TTCCACATTATTGTTCAATT+AGG | - | chr1_3:49723731-49723750 | Msa0122870:intron | 25.0% |
| ! | AACCTAATTGAACAATAATG+TGG | + | chr1_3:49723736-49723755 | None:intergenic | 25.0% |
| !! | TGAGGATCTTCAATTTATTT+TGG | - | chr1_3:49723890-49723909 | Msa0122870:exon | 25.0% |
| !!! | TCTTCAATTTATTTTGGTAG+AGG | - | chr1_3:49723896-49723915 | Msa0122870:exon | 25.0% |
| TATAGGTCTTTCTTCAACTA+TGG | + | chr1_3:49718667-49718686 | None:intergenic | 30.0% | |
| AATTATGGTCTACAGAATCA+TGG | + | chr1_3:49719097-49719116 | None:intergenic | 30.0% | |
| !! | GTTAAGAGTCAAATTTTAGC+CGG | - | chr1_3:49719453-49719472 | Msa0122870:intron | 30.0% |
| ! | ACTTTCAAAAGTGGTTTTCA+GGG | - | chr1_3:49719492-49719511 | Msa0122870:intron | 30.0% |
| TTGAACTGAGAAACAACAAA+GGG | + | chr1_3:49719574-49719593 | None:intergenic | 30.0% | |
| ATTGAACTGAGAAACAACAA+AGG | + | chr1_3:49719575-49719594 | None:intergenic | 30.0% | |
| ATGGACATGAAATGAAAACA+AGG | + | chr1_3:49719601-49719620 | None:intergenic | 30.0% | |
| ATACTAGTTACAAAACAGTC+AGG | - | chr1_3:49719795-49719814 | Msa0122870:CDS | 30.0% | |
| ! | TGTTTGAAATTTACACCCTT+TGG | - | chr1_3:49719997-49720016 | Msa0122870:intron | 30.0% |
| TGTAAAGAAAAAAAGTCCCA+CGG | + | chr1_3:49720029-49720048 | None:intergenic | 30.0% | |
| TTTACATGCAATATGTCTGT+CGG | - | chr1_3:49720043-49720062 | Msa0122870:intron | 30.0% | |
| !! | TATTTTTAAAAGTGGCCAAC+TGG | - | chr1_3:49720341-49720360 | Msa0122870:intron | 30.0% |
| AACCATTTATGGTATTTGGT+AGG | - | chr1_3:49720392-49720411 | Msa0122870:intron | 30.0% | |
| !! | AGTGGTTTTTGTATTGATCA+TGG | - | chr1_3:49720457-49720476 | Msa0122870:intron | 30.0% |
| ! | GGAAGTAAATTTTCGTCAAT+TGG | - | chr1_3:49720478-49720497 | Msa0122870:intron | 30.0% |
| ACGTAGAATATATATGCAAG+GGG | - | chr1_3:49720601-49720620 | Msa0122870:intron | 30.0% | |
| ! | AATGTACTTTGCTATAACTC+TGG | - | chr1_3:49720717-49720736 | Msa0122870:intron | 30.0% |
| ATTATTGCTTGTAAAAAGGG+AGG | - | chr1_3:49720942-49720961 | Msa0122870:intron | 30.0% | |
| CAAACCTTAATAATCATGTC+TGG | + | chr1_3:49720999-49721018 | None:intergenic | 30.0% | |
| GAAGTTTGAATATCTCTTTC+TGG | + | chr1_3:49721418-49721437 | None:intergenic | 30.0% | |
| ! | TTGGGTTCAATTCACATTTT+GGG | - | chr1_3:49721594-49721613 | Msa0122870:intron | 30.0% |
| AGATGTTCTACAATATTGAG+CGG | + | chr1_3:49721641-49721660 | None:intergenic | 30.0% | |
| ! | GAACATCTTTTGTAACAATC+AGG | - | chr1_3:49721653-49721672 | Msa0122870:CDS | 30.0% |
| TCTGCATGTAAACCAAATAT+TGG | - | chr1_3:49721802-49721821 | Msa0122870:intron | 30.0% | |
| CTGCATGTAAACCAAATATT+GGG | - | chr1_3:49721803-49721822 | Msa0122870:intron | 30.0% | |
| ATGTAAACCAAATATTGGGT+TGG | - | chr1_3:49721807-49721826 | Msa0122870:intron | 30.0% | |
| ACCTTGTCGAAATAATAACT+GGG | + | chr1_3:49721833-49721852 | None:intergenic | 30.0% | |
| ! | CACAATCCAACATTTTATTC+AGG | + | chr1_3:49721872-49721891 | None:intergenic | 30.0% |
| TTGTGCTTATGATACAGTTA+TGG | - | chr1_3:49722006-49722025 | Msa0122870:intron | 30.0% | |
| TATGAAACAGGATGATATCT+TGG | + | chr1_3:49722059-49722078 | None:intergenic | 30.0% | |
| ! | TTAAGCTAGGCTTTATGTTT+AGG | + | chr1_3:49722088-49722107 | None:intergenic | 30.0% |
| TGTATGTAGCTAATTAAGCT+AGG | + | chr1_3:49722101-49722120 | None:intergenic | 30.0% | |
| TTGTGCTTATGATACAGTTA+AGG | - | chr1_3:49722006-49722025 | Msa0122870:intron | 30.0% | |
| ! | GATATAATTAAGTTGCATGG+CGG | - | chr1_3:49722432-49722451 | Msa0122870:intron | 30.0% |
| ATAAAAACCCTTGGAATTTC+AGG | + | chr1_3:49722628-49722647 | None:intergenic | 30.0% | |
| ! | GCTTTTCTAATAAAAACCCT+TGG | + | chr1_3:49722637-49722656 | None:intergenic | 30.0% |
| GTTCATTCTCTATCATATGT+AGG | + | chr1_3:49722950-49722969 | None:intergenic | 30.0% | |
| ACATATGATAGAGAATGAAC+AGG | - | chr1_3:49722950-49722969 | Msa0122870:intron | 30.0% | |
| CATATGATAGAGAATGAACA+GGG | - | chr1_3:49722951-49722970 | Msa0122870:intron | 30.0% | |
| TGGGTTTAGATTCTTGATAT+TGG | - | chr1_3:49723161-49723180 | Msa0122870:CDS | 30.0% | |
| !! | TGCTTCCTTTTTAAAAGAGA+TGG | + | chr1_3:49723414-49723433 | None:intergenic | 30.0% |
| TTCATTGTGAATGTTTCAAC+AGG | - | chr1_3:49723486-49723505 | Msa0122870:intron | 30.0% | |
| AAGTGGTATGGCATTAATAA+CGG | - | chr1_3:49723510-49723529 | Msa0122870:intron | 30.0% | |
| ATTAATAACGGCTGAAGATT+TGG | - | chr1_3:49723522-49723541 | Msa0122870:intron | 30.0% | |
| GTTACAAATTATTGACGAGA+AGG | - | chr1_3:49723639-49723658 | Msa0122870:CDS | 30.0% | |
| AAATGCTTTAATAGCCACTA+CGG | + | chr1_3:49723695-49723714 | None:intergenic | 30.0% | |
| !! | TGTGGAAAGTGTTTACTTAT+TGG | + | chr1_3:49723718-49723737 | None:intergenic | 30.0% |
| TCTCTCTTACATTTCAAGAT+AGG | - | chr1_3:49723777-49723796 | Msa0122870:intron | 30.0% | |
| ! | GACTGTATTTTCATGTTTAC+TGG | + | chr1_3:49723826-49723845 | None:intergenic | 30.0% |
| AAAATACAGTCTGTTGAACA+TGG | - | chr1_3:49723835-49723854 | Msa0122870:CDS | 30.0% | |
| !!! | AAAACGGCTGATTTTAATTG+AGG | - | chr1_3:49723872-49723891 | Msa0122870:CDS | 30.0% |
| ! | ATCTTACATTTGGTTCCATT+TGG | - | chr1_3:49723965-49723984 | Msa0122870:five_prime_UTR | 30.0% |
| !! | AAAATTCTAGGGCGTAGTAT+TGG | - | chr1_3:49718613-49718632 | Msa0122870:three_prime_UTR | 35.0% |
| ! | GAACTTGATTCGATCGATAT+AGG | + | chr1_3:49718684-49718703 | None:intergenic | 35.0% |
| !!! | TTGTTGTTAGGGTTTTGGAT+CGG | + | chr1_3:49718726-49718745 | None:intergenic | 35.0% |
| ATCCAAAACCCTAACAACAA+TGG | - | chr1_3:49718726-49718745 | Msa0122870:three_prime_UTR | 35.0% | |
| TGAATAAACGAATCTCGAGA+GGG | + | chr1_3:49718852-49718871 | None:intergenic | 35.0% | |
| GCTGAATTGATGAGCAAATA+TGG | - | chr1_3:49718981-49719000 | Msa0122870:three_prime_UTR | 35.0% | |
| ! | TTTTCTGACTTCTTCAACTG+AGG | + | chr1_3:49719036-49719055 | None:intergenic | 35.0% |
| ! | TCAAGTGATGGTGTGAATTA+TGG | + | chr1_3:49719112-49719131 | None:intergenic | 35.0% |
| TTTCAGCAAACATCAAGTGA+TGG | + | chr1_3:49719124-49719143 | None:intergenic | 35.0% | |
| ! | TGAGCTACCGTGAATTTTAA+AGG | - | chr1_3:49719297-49719316 | Msa0122870:CDS | 35.0% |
| ! | GACTTTCAAAAGTGGTTTTC+AGG | - | chr1_3:49719491-49719510 | Msa0122870:intron | 35.0% |
| !!! | TTTTTTCAGGGAAGATGCTT+GGG | - | chr1_3:49719769-49719788 | Msa0122870:intron | 35.0% |
| ! | TTGCTAACAATTTTTCCCTG+AGG | + | chr1_3:49719822-49719841 | None:intergenic | 35.0% |
| TCAGGGAAAAATTGTTAGCA+AGG | - | chr1_3:49719821-49719840 | Msa0122870:CDS | 35.0% | |
| TTGGATAACAAATGTCCAGT+TGG | + | chr1_3:49720359-49720378 | None:intergenic | 35.0% | |
| AGCCTACCAAATACCATAAA+TGG | + | chr1_3:49720397-49720416 | None:intergenic | 35.0% | |
| TACTTCCGTTAGATTCTAAG+TGG | - | chr1_3:49720439-49720458 | Msa0122870:intron | 35.0% | |
| ! | AGCACTTTAAGAATTGCTCA+TGG | - | chr1_3:49720509-49720528 | Msa0122870:intron | 35.0% |
| CGTAGAATATATATGCAAGG+GGG | - | chr1_3:49720602-49720621 | Msa0122870:intron | 35.0% | |
| TACTGACATAGGAAACTTAC+CGG | + | chr1_3:49720760-49720779 | None:intergenic | 35.0% | |
| GCAACGTAGCTGTTTATTAT+TGG | + | chr1_3:49720888-49720907 | None:intergenic | 35.0% | |
| ! | TGTCTGGAAATTTTTCTGCA+AGG | + | chr1_3:49720983-49721002 | None:intergenic | 35.0% |
| ! | ATGCATTCCTTCTTTCTAGT+AGG | - | chr1_3:49721066-49721085 | Msa0122870:intron | 35.0% |
| !! | GTACCTGTTGATGTTTTTGA+AGG | - | chr1_3:49721088-49721107 | Msa0122870:intron | 35.0% |
| AGTCCTTCAAAAACATCAAC+AGG | + | chr1_3:49721094-49721113 | None:intergenic | 35.0% | |
| ! | TGATTTCTATCAGCCACTTT+AGG | + | chr1_3:49721157-49721176 | None:intergenic | 35.0% |
| ! | GTTGGGTTCAATTCACATTT+TGG | - | chr1_3:49721593-49721612 | Msa0122870:intron | 35.0% |
| GATGTTCTACAATATTGAGC+GGG | + | chr1_3:49721640-49721659 | None:intergenic | 35.0% | |
| GACCTTGTCGAAATAATAAC+TGG | + | chr1_3:49721834-49721853 | None:intergenic | 35.0% | |
| CGTAAGTAGCTAATTAAGCT+AGG | + | chr1_3:49721957-49721976 | None:intergenic | 35.0% | |
| !! | TTTAGGAGTGCTTATGAAAC+AGG | + | chr1_3:49722071-49722090 | None:intergenic | 35.0% |
| ! | ACTCTGATGCTTTTGATATC+TGG | - | chr1_3:49722134-49722153 | Msa0122870:intron | 35.0% |
| CTTATGATACAGTTAAGGAG+TGG | - | chr1_3:49722165-49722184 | Msa0122870:intron | 35.0% | |
| !!! | TAACTTTTTTCTGGATCAGG+TGG | - | chr1_3:49722320-49722339 | Msa0122870:intron | 35.0% |
| ! | ATTGGGTTAGATGGAGAAAT+TGG | - | chr1_3:49722369-49722388 | Msa0122870:intron | 35.0% |
| !! | ATACATTACCTGGTTTTCAG+AGG | + | chr1_3:49722493-49722512 | None:intergenic | 35.0% |
| CTTGTCTGTAATACATTACC+TGG | + | chr1_3:49722503-49722522 | None:intergenic | 35.0% | |
| ! | AGACAAGATTGCTCTCATTT+TGG | - | chr1_3:49722516-49722535 | Msa0122870:intron | 35.0% |
| TACAAACTGGTGTGTGATAT+AGG | + | chr1_3:49722588-49722607 | None:intergenic | 35.0% | |
| GCATTAACCTGAAATTCCAA+GGG | - | chr1_3:49722618-49722637 | Msa0122870:intron | 35.0% | |
| AGAGAACAAATCATTGAAGG+TGG | + | chr1_3:49722688-49722707 | None:intergenic | 35.0% | |
| CTGTAATTATGTGAATCAGG+TGG | - | chr1_3:49722735-49722754 | Msa0122870:intron | 35.0% | |
| !! | ATTTTGGTGAACATCTTTGG+TGG | - | chr1_3:49722802-49722821 | Msa0122870:intron | 35.0% |
| AAGTGTGATGTTATAGCAAG+TGG | - | chr1_3:49722832-49722851 | Msa0122870:CDS | 35.0% | |
| !! | AAACGGCGTCAATTTTGTTT+TGG | + | chr1_3:49722906-49722925 | None:intergenic | 35.0% |
| !!! | TATTTTTAAAGCACTGGGGT+TGG | - | chr1_3:49723245-49723264 | Msa0122870:intron | 35.0% |
| !!! | ATTTTTAAAGCACTGGGGTT+GGG | - | chr1_3:49723246-49723265 | Msa0122870:intron | 35.0% |
| TGAATGTTTCAACAGGAAAG+TGG | - | chr1_3:49723493-49723512 | Msa0122870:intron | 35.0% | |
| CGGATTCGATTGAGGAAAAA+TGG | + | chr1_3:49718706-49718725 | None:intergenic | 40.0% | |
| ! | TTTTGGATCGGATTCGATTG+AGG | + | chr1_3:49718714-49718733 | None:intergenic | 40.0% |
| !! | GACCATTGTTGTTAGGGTTT+TGG | + | chr1_3:49718731-49718750 | None:intergenic | 40.0% |
| ! | TCCTCTGACCATTGTTGTTA+GGG | + | chr1_3:49718737-49718756 | None:intergenic | 40.0% |
| ! | ATCCTCTGACCATTGTTGTT+AGG | + | chr1_3:49718738-49718757 | None:intergenic | 40.0% |
| GTGAATAAACGAATCTCGAG+AGG | + | chr1_3:49718853-49718872 | None:intergenic | 40.0% | |
| !! | ATGGATTACCTCGTTTTGAC+CGG | + | chr1_3:49719078-49719097 | None:intergenic | 40.0% |
| ATGCATGTTTGGTATCACGA+CGG | - | chr1_3:49719257-49719276 | Msa0122870:intron | 40.0% | |
| CTCATGTTCAGTATCACTGT+CGG | + | chr1_3:49719376-49719395 | None:intergenic | 40.0% | |
| ACAGTGATACTGAACATGAG+TGG | - | chr1_3:49719376-49719395 | Msa0122870:intron | 40.0% | |
| !!! | GGAGAATTTTGACTGTGATG+AGG | - | chr1_3:49719397-49719416 | Msa0122870:intron | 40.0% |
| !!! | ATTTTGACTGTGATGAGGAG+TGG | - | chr1_3:49719402-49719421 | Msa0122870:intron | 40.0% |
| AACTGGGATTATTGTGCAGT+TGG | - | chr1_3:49719428-49719447 | Msa0122870:intron | 40.0% | |
| !! | AAGAGTCAAATTTTAGCCGG+TGG | - | chr1_3:49719456-49719475 | Msa0122870:intron | 40.0% |
| !! | TTCAAAAGTGGTTTTCAGGG+AGG | - | chr1_3:49719495-49719514 | Msa0122870:intron | 40.0% |
| TACCAGCTATATCTTCAACC+TGG | + | chr1_3:49719542-49719561 | None:intergenic | 40.0% | |
| !!! | GTTTTTTCAGGGAAGATGCT+TGG | - | chr1_3:49719768-49719787 | Msa0122870:intron | 40.0% |
| AAGAAAAAAAGTCCCACGGT+GGG | + | chr1_3:49720025-49720044 | None:intergenic | 40.0% | |
| AAAGAAAAAAAGTCCCACGG+TGG | + | chr1_3:49720026-49720045 | None:intergenic | 40.0% | |
| TCATGAACACCAGACCAATT+TGG | - | chr1_3:49720186-49720205 | Msa0122870:CDS | 40.0% | |
| CATGAACACCAGACCAATTT+GGG | - | chr1_3:49720187-49720206 | Msa0122870:CDS | 40.0% | |
| TCATGAACACCAGACCAATT+TGG | - | chr1_3:49720186-49720205 | Msa0122870:CDS | 40.0% | |
| CATGAACACCAGACCAATTT+GGG | - | chr1_3:49720187-49720206 | Msa0122870:CDS | 40.0% | |
| AACTGGCAAACCGATACAAA+TGG | - | chr1_3:49720284-49720303 | Msa0122870:CDS | 40.0% | |
| ! | TCCAACGATGCCATTTGTAT+CGG | + | chr1_3:49720297-49720316 | None:intergenic | 40.0% |
| CTAGAAAGAAGGAATGCATC+AGG | + | chr1_3:49721065-49721084 | None:intergenic | 40.0% | |
| ACAGGTACCTACTAGAAAGA+AGG | + | chr1_3:49721076-49721095 | None:intergenic | 40.0% | |
| TACTGATGAAGATGCTGCAA+AGG | - | chr1_3:49721114-49721133 | Msa0122870:intron | 40.0% | |
| !! | TGCAAAGGTTGTTGATGGTT+TGG | - | chr1_3:49721129-49721148 | Msa0122870:intron | 40.0% |
| ! | TGATTCTGACTGCACTCTTT+TGG | - | chr1_3:49721216-49721235 | Msa0122870:CDS | 40.0% |
| TCTTTCACAGATCAATCCCA+TGG | - | chr1_3:49721322-49721341 | Msa0122870:intron | 40.0% | |
| ! | TATCTCTTTCTGGCGATATG+CGG | + | chr1_3:49721408-49721427 | None:intergenic | 40.0% |
| ACTTCGTGATACAACACAAG+AGG | - | chr1_3:49721433-49721452 | Msa0122870:CDS | 40.0% | |
| GCATTTAACTATACCTCTCG+AGG | + | chr1_3:49721461-49721480 | None:intergenic | 40.0% | |
| ! | TCAAGTTGTAATGACAGGGT+GGG | + | chr1_3:49721535-49721554 | None:intergenic | 40.0% |
| ! | GGACTCAAGTTGTAATGACA+GGG | + | chr1_3:49721539-49721558 | None:intergenic | 40.0% |
| ! | TGGACTCAAGTTGTAATGAC+AGG | + | chr1_3:49721540-49721559 | None:intergenic | 40.0% |
| TGTCATTACAACTTGAGTCC+AGG | - | chr1_3:49721539-49721558 | Msa0122870:CDS | 40.0% | |
| GTCATTACAACTTGAGTCCA+GGG | - | chr1_3:49721540-49721559 | Msa0122870:CDS | 40.0% | |
| TCATTACAACTTGAGTCCAG+GGG | - | chr1_3:49721541-49721560 | Msa0122870:intron | 40.0% | |
| CCCAACCCAAAAACATATCA+GGG | + | chr1_3:49721579-49721598 | None:intergenic | 40.0% | |
| !!! | CCCTGATATGTTTTTGGGTT+GGG | - | chr1_3:49721576-49721595 | Msa0122870:intron | 40.0% |
| ACCCAACCCAAAAACATATC+AGG | + | chr1_3:49721580-49721599 | None:intergenic | 40.0% | |
| GCCCAGTTATTATTTCGACA+AGG | - | chr1_3:49721829-49721848 | Msa0122870:intron | 40.0% | |
| CGTATAAGACAGGATGAGAT+GGG | + | chr1_3:49721917-49721936 | None:intergenic | 40.0% | |
| ! | TTTAGGAGTGCGTATAAGAC+AGG | + | chr1_3:49721927-49721946 | None:intergenic | 40.0% |
| !! | TTAAGCTAGGCTCTGAGTTT+AGG | + | chr1_3:49721944-49721963 | None:intergenic | 40.0% |
| !! | ACACTGTTGCTTTCGATATC+TGG | - | chr1_3:49721980-49721999 | Msa0122870:intron | 40.0% |
| TACAGTTATGGAGTGAAGTG+AGG | - | chr1_3:49722018-49722037 | Msa0122870:intron | 40.0% | |
| GAGTGAAGTGAGGTTCTATA+TGG | - | chr1_3:49722028-49722047 | Msa0122870:intron | 40.0% | |
| GGCATTAACCTGAAATTCCA+AGG | - | chr1_3:49722617-49722636 | Msa0122870:intron | 40.0% | |
| CTAGTGAGTAGCAACAACTA+AGG | + | chr1_3:49722662-49722681 | None:intergenic | 40.0% | |
| GGCAGAGAACAAATCATTGA+AGG | + | chr1_3:49722691-49722710 | None:intergenic | 40.0% | |
| ! | TGACAAAGTGAAGGCGATTT+TGG | - | chr1_3:49722786-49722805 | Msa0122870:intron | 40.0% |
| !! | GCGATTTTGGTGAACATCTT+TGG | - | chr1_3:49722799-49722818 | Msa0122870:intron | 40.0% |
| AATAGTGAATGCTGCAAAGC+AGG | - | chr1_3:49722855-49722874 | Msa0122870:intron | 40.0% | |
| CCTTCAAGACGAACTATTAC+TGG | + | chr1_3:49723322-49723341 | None:intergenic | 40.0% | |
| CCAGTAATAGTTCGTCTTGA+AGG | - | chr1_3:49723319-49723338 | Msa0122870:intron | 40.0% | |
| ! | AAGGCACCAATGTTGATCAA+GGG | - | chr1_3:49723338-49723357 | Msa0122870:intron | 40.0% |
| ! | GCTTTTCCCTTGATCAACAT+TGG | + | chr1_3:49723347-49723366 | None:intergenic | 40.0% |
| !! | TCAAGGGAAAAGCATTCTGA+AGG | - | chr1_3:49723354-49723373 | Msa0122870:intron | 40.0% |
| GTTTCAACAGGAAAGTGGTA+TGG | - | chr1_3:49723498-49723517 | Msa0122870:intron | 40.0% | |
| TCTTCTCATTGAATCCGTAG+TGG | - | chr1_3:49723678-49723697 | Msa0122870:intron | 40.0% | |
| GGTTTATGCATGTGATTGCA+TGG | - | chr1_3:49723752-49723771 | Msa0122870:intron | 40.0% | |
| !! | AATCAGCCGTTTTGTCCAAT+CGG | + | chr1_3:49723865-49723884 | None:intergenic | 40.0% |
| ACCCTAACAACAATGGTCAG+AGG | - | chr1_3:49718733-49718752 | Msa0122870:three_prime_UTR | 45.0% | |
| GATACTCGTGGATGTTGAGA+CGG | + | chr1_3:49718825-49718844 | None:intergenic | 45.0% | |
| TCTCAACATCCACGAGTATC+AGG | - | chr1_3:49718825-49718844 | Msa0122870:three_prime_UTR | 45.0% | |
| TATGGAGTTAACGTTCCCAG+AGG | - | chr1_3:49718999-49719018 | Msa0122870:three_prime_UTR | 45.0% | |
| !! | TGGATTACCTCGTTTTGACC+GGG | + | chr1_3:49719077-49719096 | None:intergenic | 45.0% |
| TGCATGTTTGGTATCACGAC+GGG | - | chr1_3:49719258-49719277 | Msa0122870:intron | 45.0% | |
| ! | CGACGGGTTTGTCAGAATTA+CGG | - | chr1_3:49719274-49719293 | Msa0122870:CDS | 45.0% |
| ACAATGGCTCAATGTGACTC+TGG | - | chr1_3:49719346-49719365 | Msa0122870:intron | 45.0% | |
| TGATGAGGAGTGGTGTAACT+GGG | - | chr1_3:49719412-49719431 | Msa0122870:intron | 45.0% | |
| TGGGATTATTGTGCAGTTGG+TGG | - | chr1_3:49719431-49719450 | Msa0122870:intron | 45.0% | |
| GGATTGGGGACTTTCAAAAG+TGG | - | chr1_3:49719483-49719502 | Msa0122870:intron | 45.0% | |
| GCACATTGTTAAGACTGACC+AGG | - | chr1_3:49719521-49719540 | Msa0122870:intron | 45.0% | |
| ! | GACCAGGTTGAAGATATAGC+TGG | - | chr1_3:49719537-49719556 | Msa0122870:intron | 45.0% |
| TACAAAACAGTCAGGTCCTC+AGG | - | chr1_3:49719803-49719822 | Msa0122870:CDS | 45.0% | |
| ACAAAACAGTCAGGTCCTCA+GGG | - | chr1_3:49719804-49719823 | Msa0122870:CDS | 45.0% | |
| ATGCAATATGTCTGTCGGAG+AGG | - | chr1_3:49720048-49720067 | Msa0122870:intron | 45.0% | |
| ! | TTTTTCTGGACTGATCCTGC+TGG | - | chr1_3:49720114-49720133 | Msa0122870:intron | 45.0% |
| CTGAAATCCAACGCCCAAAT+TGG | + | chr1_3:49720165-49720184 | None:intergenic | 45.0% | |
| CTGAAATCCAACGCCCAAAT+TGG | + | chr1_3:49720165-49720184 | None:intergenic | 45.0% | |
| CTGAAATCCAACGCCCAAAT+TGG | + | chr1_3:49720165-49720184 | None:intergenic | 45.0% | |
| AACCATCCAGCACTTGAAAC+TGG | - | chr1_3:49720267-49720286 | Msa0122870:CDS | 45.0% | |
| ACCGATACAAATGGCATCGT+TGG | - | chr1_3:49720293-49720312 | Msa0122870:intron | 45.0% | |
| TACAAATGGCATCGTTGGAC+TGG | - | chr1_3:49720298-49720317 | Msa0122870:intron | 45.0% | |
| TTCTGCAAGGTCTTCAATGC+TGG | + | chr1_3:49720970-49720989 | None:intergenic | 45.0% | |
| GATGCTGCAAAGGTTGTTGA+TGG | - | chr1_3:49721124-49721143 | Msa0122870:intron | 45.0% | |
| ! | TGATGGTTTGGCTCCTAAAG+TGG | - | chr1_3:49721141-49721160 | Msa0122870:intron | 45.0% |
| TTCACAGATCAATCCCATGG+CGG | - | chr1_3:49721325-49721344 | Msa0122870:intron | 45.0% | |
| TAGCATCAGCAGCTACTAGT+TGG | + | chr1_3:49721364-49721383 | None:intergenic | 45.0% | |
| ! | GTAATGACAGGGTGGGTTTA+GGG | + | chr1_3:49721528-49721547 | None:intergenic | 45.0% |
| ! | TGTAATGACAGGGTGGGTTT+AGG | + | chr1_3:49721529-49721548 | None:intergenic | 45.0% |
| ! | CTCAAGTTGTAATGACAGGG+TGG | + | chr1_3:49721536-49721555 | None:intergenic | 45.0% |
| ! | AGCCAGCCCTGATATGTTTT+TGG | - | chr1_3:49721570-49721589 | Msa0122870:intron | 45.0% |
| ! | GCCAGCCCTGATATGTTTTT+GGG | - | chr1_3:49721571-49721590 | Msa0122870:intron | 45.0% |
| ACCCAAAAACATATCAGGGC+TGG | + | chr1_3:49721575-49721594 | None:intergenic | 45.0% | |
| !!! | GCCCTGATATGTTTTTGGGT+TGG | - | chr1_3:49721575-49721594 | Msa0122870:intron | 45.0% |
| !! | CATTTTGGGTAAGCCGAAGT+CGG | - | chr1_3:49721608-49721627 | Msa0122870:intron | 45.0% |
| AACTGGGCCAACCCAATATT+TGG | + | chr1_3:49721817-49721836 | None:intergenic | 45.0% | |
| GCGTATAAGACAGGATGAGA+TGG | + | chr1_3:49721918-49721937 | None:intergenic | 45.0% | |
| TACAGTTAAGGAGTGGAGTG+AGG | - | chr1_3:49722172-49722191 | Msa0122870:intron | 45.0% | |
| !! | GAGTGGAGTGAGGTTCTAAA+TGG | - | chr1_3:49722182-49722201 | Msa0122870:intron | 45.0% |
| AGATGGAGAAATTGGCTGCA+TGG | - | chr1_3:49722377-49722396 | Msa0122870:intron | 45.0% | |
| GAAATTGGCTGCATGGTGAA+TGG | - | chr1_3:49722384-49722403 | Msa0122870:intron | 45.0% | |
| ! | CCTGCCAATTTTCTGGATGT+CGG | - | chr1_3:49722459-49722478 | Msa0122870:intron | 45.0% |
| ACCACCGACATCCAGAAAAT+TGG | + | chr1_3:49722466-49722485 | None:intergenic | 45.0% | |
| CACCAGTTTGTAGTCTGCTT+TGG | - | chr1_3:49722596-49722615 | Msa0122870:intron | 45.0% | |
| TGCCAAAGCAGACTACAAAC+TGG | + | chr1_3:49722601-49722620 | None:intergenic | 45.0% | |
| AACCGCTGATGACAAAGTGA+AGG | - | chr1_3:49722777-49722796 | Msa0122870:intron | 45.0% | |
| !! | GAAGGCACCAATGTTGATCA+AGG | - | chr1_3:49723337-49723356 | Msa0122870:intron | 45.0% |
| GTTGAACATGGTTCACCGAT+TGG | - | chr1_3:49723847-49723866 | Msa0122870:CDS | 45.0% | |
| ! | GGTTCACCGATTGGACAAAA+CGG | - | chr1_3:49723856-49723875 | Msa0122870:CDS | 45.0% |
| !! | AAATAAAAATAAAAATTCTA+GGG | - | chr1_3:49718602-49718621 | Msa0122870:three_prime_UTR | 5.0% |
| !!! | TTTATTTTTATTTTTAAAAG+TGG | - | chr1_3:49720333-49720352 | Msa0122870:intron | 5.0% |
| !! | CTGTTGATTCTGCCATGTGC+CGG | + | chr1_3:49718797-49718816 | None:intergenic | 50.0% |
| GCCATCAAAGATGCATTCCC+CGG | - | chr1_3:49719056-49719075 | Msa0122870:exon | 50.0% | |
| ACCGGGGAATGCATCTTTGA+TGG | + | chr1_3:49719060-49719079 | None:intergenic | 50.0% | |
| !! | GGATTACCTCGTTTTGACCG+GGG | + | chr1_3:49719076-49719095 | None:intergenic | 50.0% |
| GTGATGAGGAGTGGTGTAAC+TGG | - | chr1_3:49719411-49719430 | Msa0122870:intron | 50.0% | |
| !! | CAAATTTTAGCCGGTGGACG+AGG | - | chr1_3:49719462-49719481 | Msa0122870:intron | 50.0% |
| AGTTTACCAGTCCAACCAGC+AGG | + | chr1_3:49720132-49720151 | None:intergenic | 50.0% | |
| !! | TGCTGGTTGGACTGGTAAAC+TGG | - | chr1_3:49720131-49720150 | Msa0122870:intron | 50.0% |
| AACTGGCCACCAGACCAATT+TGG | - | chr1_3:49720148-49720167 | Msa0122870:CDS | 50.0% | |
| ACTGGCCACCAGACCAATTT+GGG | - | chr1_3:49720149-49720168 | Msa0122870:CDS | 50.0% | |
| ATCCAACGCCCAAATTGGTC+TGG | + | chr1_3:49720160-49720179 | None:intergenic | 50.0% | |
| ATCCAACGCCCAAATTGGTC+TGG | + | chr1_3:49720160-49720179 | None:intergenic | 50.0% | |
| ATCCAACGCCCAAATTGGTC+TGG | + | chr1_3:49720160-49720179 | None:intergenic | 50.0% | |
| !! | TGCCAGTTTCAAGTGCTGGA+TGG | + | chr1_3:49720272-49720291 | None:intergenic | 50.0% |
| ! | GGTTTGCCAGTTTCAAGTGC+TGG | + | chr1_3:49720276-49720295 | None:intergenic | 50.0% |
| ACTCTGGATCGTAAGACTGC+TGG | - | chr1_3:49720733-49720752 | Msa0122870:intron | 50.0% | |
| TTATCAGCTGTCTCCGCCAT+GGG | + | chr1_3:49721341-49721360 | None:intergenic | 50.0% | |
| AACACAAGAGGATCCTCGAG+AGG | - | chr1_3:49721445-49721464 | Msa0122870:CDS | 50.0% | |
| ! | GAATGGAGCAGGGTTAGCAA+TGG | - | chr1_3:49722401-49722420 | Msa0122870:intron | 50.0% |
| ! | AGGGTTAGCAATGGCCACAA+TGG | - | chr1_3:49722410-49722429 | Msa0122870:intron | 50.0% |
| ! | CGGTACTCCTGCCAATTTTC+TGG | - | chr1_3:49722452-49722471 | Msa0122870:intron | 50.0% |
| CCGACATCCAGAAAATTGGC+AGG | + | chr1_3:49722462-49722481 | None:intergenic | 50.0% | |
| ! | GCCAATTTTCTGGATGTCGG+TGG | - | chr1_3:49722462-49722481 | Msa0122870:intron | 50.0% |
| CGCCTTCACTTTGTCATCAG+CGG | + | chr1_3:49722782-49722801 | None:intergenic | 50.0% | |
| ACTCGTGGATGTTGAGACGG+CGG | + | chr1_3:49718822-49718841 | None:intergenic | 55.0% | |
| ! | TAACGTTCCCAGAGGCGTAG+CGG | - | chr1_3:49719007-49719026 | Msa0122870:three_prime_UTR | 55.0% |
| TGCATTCCCCGGTCAAAACG+AGG | - | chr1_3:49719067-49719086 | Msa0122870:CDS | 55.0% | |
| TTTAGCCGGTGGACGAGGAT+TGG | - | chr1_3:49719467-49719486 | Msa0122870:intron | 55.0% | |
| TTAGCCGGTGGACGAGGATT+GGG | - | chr1_3:49719468-49719487 | Msa0122870:intron | 55.0% | |
| TCTGGACTGATCCTGCTGGT+TGG | - | chr1_3:49720118-49720137 | Msa0122870:intron | 55.0% | |
| ! | ACTGATCCTGCTGGTTGGAC+TGG | - | chr1_3:49720123-49720142 | Msa0122870:intron | 55.0% |
| ! | CAACGCCCAAATTGGTCTGG+TGG | + | chr1_3:49720157-49720176 | None:intergenic | 55.0% |
| CACCAGACCAATTTGGGCGT+TGG | - | chr1_3:49720155-49720174 | Msa0122870:CDS | 55.0% | |
| CACCAGACCAATTTGGGCGT+TGG | - | chr1_3:49720155-49720174 | Msa0122870:CDS | 55.0% | |
| CACCAGACCAATTTGGGCGT+TGG | - | chr1_3:49720155-49720174 | Msa0122870:CDS | 55.0% | |
| GGATCGTAAGACTGCTGGTC+CGG | - | chr1_3:49720738-49720757 | Msa0122870:intron | 55.0% | |
| GTTATCAGCTGTCTCCGCCA+TGG | + | chr1_3:49721342-49721361 | None:intergenic | 55.0% | |
| GCTGCATGGTGAATGGAGCA+GGG | - | chr1_3:49722391-49722410 | Msa0122870:intron | 55.0% | |
| !! | TGGTGCTGCCTCTGAAAACC+AGG | - | chr1_3:49722482-49722501 | Msa0122870:intron | 55.0% |
| ! | ATTCTGCCATGTGCCGGCGA+CGG | + | chr1_3:49718791-49718810 | None:intergenic | 60.0% |
| CGAGAGGGACCTGATACTCG+TGG | + | chr1_3:49718837-49718856 | None:intergenic | 60.0% | |
| GAGGAAACCGCTACGCCTCT+GGG | + | chr1_3:49719017-49719036 | None:intergenic | 60.0% | |
| TGAGGAAACCGCTACGCCTC+TGG | + | chr1_3:49719018-49719037 | None:intergenic | 60.0% | |
| TAGCCGGTGGACGAGGATTG+GGG | - | chr1_3:49719469-49719488 | Msa0122870:intron | 60.0% | |
| AGTCCCCAATCCTCGTCCAC+CGG | + | chr1_3:49719475-49719494 | None:intergenic | 60.0% | |
| ACACCCTTTGGATCCCACCG+TGG | - | chr1_3:49720009-49720028 | Msa0122870:intron | 60.0% | |
| CACCCTTTGGATCCCACCGT+GGG | - | chr1_3:49720010-49720029 | Msa0122870:intron | 60.0% | |
| GTCCCACGGTGGGATCCAAA+GGG | + | chr1_3:49720015-49720034 | None:intergenic | 60.0% | |
| AGTCCCACGGTGGGATCCAA+AGG | + | chr1_3:49720016-49720035 | None:intergenic | 60.0% | |
| !! | AGGGCTGGCTAGAAAACCCC+TGG | + | chr1_3:49721560-49721579 | None:intergenic | 60.0% |
| !! | GAGCGGGATAGTGCCGACTT+CGG | + | chr1_3:49721624-49721643 | None:intergenic | 60.0% |
| GGATCAGGTGGCTGCTGCAA+AGG | - | chr1_3:49722332-49722351 | Msa0122870:intron | 60.0% | |
| GGCTGCATGGTGAATGGAGC+AGG | - | chr1_3:49722390-49722409 | Msa0122870:intron | 60.0% | |
| TCTCGCTCTCTCTCCGTCGC+CGG | - | chr1_3:49718775-49718794 | Msa0122870:three_prime_UTR | 65.0% | |
| CTCTCTCCGTCGCCGGCACA+TGG | - | chr1_3:49718782-49718801 | Msa0122870:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 49718591 | 49724056 | 49718591 | ID=Msa0122870;Name=Msa0122870 |
| chr1_3 | mRNA | 49718591 | 49724056 | 49718591 | ID=Msa0122870-mRNA-1;Parent=Msa0122870;Name=Msa0122870-mRNA-1;_AED=0.06;_eAED=0.06;_QI=154|1|1|1|1|1|12|474|421 |
| chr1_3 | exon | 49718591 | 49719139 | 49718591 | ID=Msa0122870-mRNA-1:exon:15134;Parent=Msa0122870-mRNA-1 |
| chr1_3 | exon | 49719272 | 49719343 | 49719272 | ID=Msa0122870-mRNA-1:exon:15133;Parent=Msa0122870-mRNA-1 |
| chr1_3 | exon | 49719771 | 49719893 | 49719771 | ID=Msa0122870-mRNA-1:exon:15132;Parent=Msa0122870-mRNA-1 |
| chr1_3 | exon | 49720144 | 49720308 | 49720144 | ID=Msa0122870-mRNA-1:exon:15131;Parent=Msa0122870-mRNA-1 |
| chr1_3 | exon | 49721181 | 49721315 | 49721181 | ID=Msa0122870-mRNA-1:exon:15130;Parent=Msa0122870-mRNA-1 |
| chr1_3 | exon | 49721407 | 49721559 | 49721407 | ID=Msa0122870-mRNA-1:exon:15129;Parent=Msa0122870-mRNA-1 |
| chr1_3 | exon | 49721634 | 49721708 | 49721634 | ID=Msa0122870-mRNA-1:exon:15128;Parent=Msa0122870-mRNA-1 |
| chr1_3 | exon | 49721888 | 49721965 | 49721888 | ID=Msa0122870-mRNA-1:exon:15127;Parent=Msa0122870-mRNA-1 |
| chr1_3 | exon | 49722805 | 49722869 | 49722805 | ID=Msa0122870-mRNA-1:exon:15126;Parent=Msa0122870-mRNA-1 |
| chr1_3 | exon | 49723089 | 49723200 | 49723089 | ID=Msa0122870-mRNA-1:exon:15125;Parent=Msa0122870-mRNA-1 |
| chr1_3 | exon | 49723559 | 49723669 | 49723559 | ID=Msa0122870-mRNA-1:exon:15124;Parent=Msa0122870-mRNA-1 |
| chr1_3 | exon | 49723801 | 49724056 | 49723801 | ID=Msa0122870-mRNA-1:exon:15123;Parent=Msa0122870-mRNA-1 |
| chr1_3 | five_prime_UTR | 49723903 | 49724056 | 49723903 | ID=Msa0122870-mRNA-1:five_prime_utr;Parent=Msa0122870-mRNA-1 |
| chr1_3 | CDS | 49723801 | 49723902 | 49723801 | ID=Msa0122870-mRNA-1:cds;Parent=Msa0122870-mRNA-1 |
| chr1_3 | CDS | 49723559 | 49723669 | 49723559 | ID=Msa0122870-mRNA-1:cds;Parent=Msa0122870-mRNA-1 |
| chr1_3 | CDS | 49723089 | 49723200 | 49723089 | ID=Msa0122870-mRNA-1:cds;Parent=Msa0122870-mRNA-1 |
| chr1_3 | CDS | 49722805 | 49722869 | 49722805 | ID=Msa0122870-mRNA-1:cds;Parent=Msa0122870-mRNA-1 |
| chr1_3 | CDS | 49721888 | 49721965 | 49721888 | ID=Msa0122870-mRNA-1:cds;Parent=Msa0122870-mRNA-1 |
| chr1_3 | CDS | 49721634 | 49721708 | 49721634 | ID=Msa0122870-mRNA-1:cds;Parent=Msa0122870-mRNA-1 |
| chr1_3 | CDS | 49721407 | 49721559 | 49721407 | ID=Msa0122870-mRNA-1:cds;Parent=Msa0122870-mRNA-1 |
| chr1_3 | CDS | 49721181 | 49721315 | 49721181 | ID=Msa0122870-mRNA-1:cds;Parent=Msa0122870-mRNA-1 |
| chr1_3 | CDS | 49720144 | 49720308 | 49720144 | ID=Msa0122870-mRNA-1:cds;Parent=Msa0122870-mRNA-1 |
| chr1_3 | CDS | 49719771 | 49719893 | 49719771 | ID=Msa0122870-mRNA-1:cds;Parent=Msa0122870-mRNA-1 |
| chr1_3 | CDS | 49719272 | 49719343 | 49719272 | ID=Msa0122870-mRNA-1:cds;Parent=Msa0122870-mRNA-1 |
| chr1_3 | CDS | 49719065 | 49719139 | 49719065 | ID=Msa0122870-mRNA-1:cds;Parent=Msa0122870-mRNA-1 |
| chr1_3 | three_prime_UTR | 49718591 | 49719064 | 49718591 | ID=Msa0122870-mRNA-1:three_prime_utr;Parent=Msa0122870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
