Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167400 | sp|Q6K9N6|SUCB_ORYSJ | 86.158 | 419 | 58 | 0 | 1 | 419 | 1 | 419 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167400 | A0A072VL01 | 99.525 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 0.0 | 848 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051970 | Msa0167400 | 0.813915 | 2.009630e-51 | -8.615850e-47 |
| Msa0062350 | Msa0167400 | 0.807337 | 5.309876e-50 | -8.615850e-47 |
| Msa0075210 | Msa0167400 | 0.862217 | 5.926742e-64 | -8.615850e-47 |
| Msa0118600 | Msa0167400 | 0.808646 | 2.796054e-50 | -8.615850e-47 |
| Msa0122870 | Msa0167400 | 0.860674 | 1.752140e-63 | -8.615850e-47 |
| Msa0127530 | Msa0167400 | 0.830502 | 2.832298e-55 | -8.615850e-47 |
| Msa0137540 | Msa0167400 | 0.802015 | 6.856476e-49 | -8.615850e-47 |
| Msa0144380 | Msa0167400 | 0.804054 | 2.596784e-49 | -8.615850e-47 |
| Msa0167400 | Msa0252410 | 0.826878 | 2.130701e-54 | -8.615850e-47 |
| Msa0167400 | Msa0511150 | 0.812558 | 3.991974e-51 | -8.615850e-47 |
| Msa0167400 | Msa0656810 | 0.803642 | 3.162680e-49 | -8.615850e-47 |
| Msa0167400 | Msa0826510 | 0.811804 | 5.827642e-51 | -8.615850e-47 |
| Msa0167400 | Msa0865620 | 0.812716 | 3.685306e-51 | -8.615850e-47 |
| Msa0167400 | Msa1229620 | 0.802243 | 6.154775e-49 | -8.615850e-47 |
| Msa0167400 | Msa1271780 | 0.803706 | 3.067083e-49 | -8.615850e-47 |
| Msa0167400 | Msa1310230 | 0.802866 | 4.577357e-49 | -8.615850e-47 |
| Msa0167400 | Msa1366170 | 0.821532 | 3.839812e-53 | -8.615850e-47 |
| Msa0167400 | Msa1403560 | 0.818794 | 1.627204e-52 | -8.615850e-47 |
| Msa0167400 | Msa1409260 | 0.802710 | 4.930732e-49 | -8.615850e-47 |
| Msa0167400 | Msa1459910 | 0.818065 | 2.380565e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167400 | MtrunA17_Chr1g0183491 | 99.525 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167400 | AT2G20420.1 | 85.885 | 418 | 59 | 0 | 2 | 419 | 1 | 418 | 0.0 | 747 |
Find 106 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGAAAGTGTTTACTTAT+TGG | 0.141400 | 1_4:+49285582 | None:intergenic |
| TTCAAATTTGAATGTTTAAT+TGG | 0.150084 | 1_4:-49285374 | Msa0167400:three_prime_UTR |
| GAAGTTTGAATATCTCTTTC+TGG | 0.175075 | 1_4:+49287804 | None:intergenic |
| GACCATTGTTGTTAGGGTTT+TGG | 0.196821 | 1_4:+49290404 | None:intergenic |
| GCTTATTATTGCTTGTAAAA+AGG | 0.207735 | 1_4:-49288280 | Msa0167400:CDS |
| AAGGCAGATTTAAATTATAT+TGG | 0.212296 | 1_4:-49286858 | Msa0167400:CDS |
| TATAGGTCTTTCTTCAACTA+TGG | 0.221689 | 1_4:+49290468 | None:intergenic |
| TGAGGATCTTCAATTTATTT+TGG | 0.228148 | 1_4:-49285405 | Msa0167400:three_prime_UTR |
| TGACAAAGTGAAGGCTATTT+TGG | 0.228396 | 1_4:-49286462 | Msa0167400:CDS |
| ATTGGGTTAGATGGAGAAAT+TGG | 0.248780 | 1_4:-49286840 | Msa0167400:CDS |
| TTAAATTATATTGGGTTAGA+TGG | 0.259385 | 1_4:-49286849 | Msa0167400:CDS |
| ATTTCCAGACATGATTATTA+AGG | 0.260056 | 1_4:-49288226 | Msa0167400:intron |
| TGATTCTGACTGCACTCTTT+TGG | 0.271327 | 1_4:-49288002 | Msa0167400:CDS |
| TTCCACATTATTGTTCAATT+AGG | 0.296568 | 1_4:-49285566 | Msa0167400:three_prime_UTR |
| TGATTTCTATCAGCCACTTT+AGG | 0.310229 | 1_4:+49288064 | None:intergenic |
| ATTAATAACGGCTGAAGATT+TGG | 0.314200 | 1_4:-49285775 | Msa0167400:CDS |
| GCTGAATTGATGAGCAAATA+TGG | 0.315960 | 1_4:-49290151 | Msa0167400:CDS |
| AGGCAGATTTAAATTATATT+GGG | 0.326373 | 1_4:-49286857 | Msa0167400:CDS |
| ATCCTCTGACCATTGTTGTT+AGG | 0.334086 | 1_4:+49290397 | None:intergenic |
| TCTTTCTTACATTTCAAGAT+AGG | 0.335092 | 1_4:-49285520 | Msa0167400:three_prime_UTR |
| ACCACCGACATCCAGAAAAT+TGG | 0.337667 | 1_4:+49286746 | None:intergenic |
| CCTTCAAGACGAACTATTAC+TGG | 0.352447 | 1_4:+49285960 | None:intergenic |
| ATCTTACATTTGGTTCCATT+TGG | 0.353516 | 1_4:-49285331 | Msa0167400:three_prime_UTR |
| AAATTGCGTTGTAACTAAAC+TGG | 0.366199 | 1_4:+49285688 | None:intergenic |
| TTAGCCGGTGGACGAGGATT+GGG | 0.369874 | 1_4:-49289675 | Msa0167400:CDS |
| ACCGGGGAATGCATCTTTGA+TGG | 0.376142 | 1_4:+49290075 | None:intergenic |
| TGCAAAGGTTGTTGATGGTT+TGG | 0.380876 | 1_4:-49288089 | Msa0167400:CDS |
| TGAGGAAACCGCTACGCCTC+TGG | 0.390330 | 1_4:+49290117 | None:intergenic |
| TCTCAACATCCACGAGTATC+AGG | 0.395102 | 1_4:-49290307 | Msa0167400:intron |
| TCCTCTGACCATTGTTGTTA+GGG | 0.398230 | 1_4:+49290398 | None:intergenic |
| TACAAAACAGTCAGGTCCTC+AGG | 0.399292 | 1_4:-49289325 | Msa0167400:CDS |
| TTCTGCAAGGTCTTCAATGC+TGG | 0.400023 | 1_4:+49288251 | None:intergenic |
| TTTAGCCGGTGGACGAGGAT+TGG | 0.412502 | 1_4:-49289676 | Msa0167400:CDS |
| AATACAGTCTGTTGAACATA+TGG | 0.417523 | 1_4:-49285460 | Msa0167400:three_prime_UTR |
| CTCTCTCCGTCGCCGGCACA+TGG | 0.417809 | 1_4:-49290350 | Msa0167400:CDS |
| GAACTTGATTCGATCGATAT+AGG | 0.423710 | 1_4:+49290451 | None:intergenic |
| CCAGTAATAGTTCGTCTTGA+AGG | 0.437190 | 1_4:-49285960 | Msa0167400:CDS |
| AACAAAATAAACTTAAACCT+TGG | 0.446297 | 1_4:+49285294 | None:intergenic |
| AATGTACTTTGCTATAACTC+TGG | 0.458552 | 1_4:-49288492 | Msa0167400:CDS |
| TGAACATATGGTTCACCGAT+TGG | 0.464525 | 1_4:-49285448 | Msa0167400:three_prime_UTR |
| CAAACCTTAATAATCATGTC+TGG | 0.470096 | 1_4:+49288222 | None:intergenic |
| GATGCTGCAAAGGTTGTTGA+TGG | 0.481004 | 1_4:-49288094 | Msa0167400:CDS |
| GGCTGCATGGTGAATGGAGC+AGG | 0.482177 | 1_4:-49286819 | Msa0167400:CDS |
| GGATCGTAAGACTGCTGGTC+CGG | 0.485726 | 1_4:-49288471 | Msa0167400:intron |
| TAGCATCAGCAGCTACTAGT+TGG | 0.488406 | 1_4:+49287858 | None:intergenic |
| TTATCAGCTGTCTCCGCCAT+GGG | 0.493856 | 1_4:+49287881 | None:intergenic |
| TCGTCAATAATTTGTAACTC+AGG | 0.496657 | 1_4:+49285663 | None:intergenic |
| GTTATCAGCTGTCTCCGCCA+TGG | 0.498469 | 1_4:+49287880 | None:intergenic |
| GAAGGCACCAATGTTGATCA+AGG | 0.499839 | 1_4:-49285942 | Msa0167400:CDS |
| GGATCAGGTGGCTGCTGCAA+AGG | 0.506091 | 1_4:-49286877 | Msa0167400:intron |
| AATAGTGAATGCTGCAAAGC+AGG | 0.513542 | 1_4:-49286393 | Msa0167400:intron |
| GCCATCAAAGATGCATTCCC+CGG | 0.516361 | 1_4:-49290076 | Msa0167400:CDS |
| GAAATTGGCTGCATGGTGAA+TGG | 0.525680 | 1_4:-49286825 | Msa0167400:CDS |
| GAGGAAACCGCTACGCCTCT+GGG | 0.528679 | 1_4:+49290118 | None:intergenic |
| GGTTCACCGATTGGACAAAA+CGG | 0.536083 | 1_4:-49285439 | Msa0167400:three_prime_UTR |
| CTGTTGATTCTGCCATGTGC+CGG | 0.536899 | 1_4:+49290338 | None:intergenic |
| AAAATTCTAGGGTGTAGTAT+TGG | 0.538094 | 1_4:-49290519 | Msa0167400:five_prime_UTR |
| TGATGGTTTGGCTCCTAAAG+TGG | 0.542936 | 1_4:-49288077 | Msa0167400:CDS |
| ACTCTGGATCGTAAGACTGC+TGG | 0.543398 | 1_4:-49288476 | Msa0167400:CDS |
| AAGTGGTATGGCATTAATAA+CGG | 0.545339 | 1_4:-49285787 | Msa0167400:CDS |
| TAGCCGGTGGACGAGGATTG+GGG | 0.546458 | 1_4:-49289674 | Msa0167400:CDS |
| TCTCGCTCTCTCTCCGTCGC+CGG | 0.547633 | 1_4:-49290357 | Msa0167400:CDS |
| GTTACAAATTATTGACGAGA+AGG | 0.558156 | 1_4:-49285658 | Msa0167400:three_prime_UTR |
| GTTTCAACAGGAAAGTGGTA+TGG | 0.559539 | 1_4:-49285799 | Msa0167400:intron |
| AGCCTTCACTTTGTCATCAG+CGG | 0.561020 | 1_4:+49286469 | None:intergenic |
| AGTCCCCAATCCTCGTCCAC+CGG | 0.563023 | 1_4:+49289671 | None:intergenic |
| GGTTTATGCATGTGATTGCA+TGG | 0.563716 | 1_4:-49285545 | Msa0167400:three_prime_UTR |
| TGGTGCTGCCTCTGAAAACC+AGG | 0.565708 | 1_4:-49286727 | Msa0167400:intron |
| ATACTAGTTACAAAACAGTC+AGG | 0.567777 | 1_4:-49289333 | Msa0167400:CDS |
| TGAATGTTTCAACAGGAAAG+TGG | 0.569848 | 1_4:-49285804 | Msa0167400:intron |
| ATTCTGCCATGTGCCGGCGA+CGG | 0.571062 | 1_4:+49290344 | None:intergenic |
| GACCAGGTTGAAGATATAGC+TGG | 0.576329 | 1_4:-49289606 | Msa0167400:intron |
| AAGTGTGATGTTATAGCAAG+TGG | 0.576361 | 1_4:-49286416 | Msa0167400:CDS |
| TTACAAATTATTGACGAGAA+GGG | 0.576654 | 1_4:-49285657 | Msa0167400:three_prime_UTR |
| ATGGATATAATTAAGTTGCA+TGG | 0.580190 | 1_4:-49286780 | Msa0167400:CDS |
| CAACTTAATTATATCCATTG+TGG | 0.580693 | 1_4:+49286785 | None:intergenic |
| AACCTAATTGAACAATAATG+TGG | 0.581936 | 1_4:+49285564 | None:intergenic |
| TACTGATGAAGATGCTGCAA+AGG | 0.593207 | 1_4:-49288104 | Msa0167400:CDS |
| ACAAAACAGTCAGGTCCTCA+GGG | 0.599578 | 1_4:-49289324 | Msa0167400:CDS |
| GGATTGGGGACTTTCAAAAG+TGG | 0.603342 | 1_4:-49289660 | Msa0167400:CDS |
| ACTTCGTGATACAACACAAG+AGG | 0.604434 | 1_4:-49287786 | Msa0167400:CDS |
| TAACGTTCCCAGAGGCGTAG+CGG | 0.610301 | 1_4:-49290125 | Msa0167400:CDS |
| TCTTTCACAGATCAATCCCA+TGG | 0.610578 | 1_4:-49287897 | Msa0167400:intron |
| GCATTTAACTATACCTCTCG+AGG | 0.610638 | 1_4:+49287761 | None:intergenic |
| TCAAGGGAAAAGCATTCTGA+AGG | 0.611993 | 1_4:-49285925 | Msa0167400:intron |
| TATCTCTTTCTGGCGATATG+CGG | 0.620041 | 1_4:+49287814 | None:intergenic |
| AACCGCTGATGACAAAGTGA+AGG | 0.621215 | 1_4:-49286471 | Msa0167400:CDS |
| AGATGGAGAAATTGGCTGCA+TGG | 0.622314 | 1_4:-49286832 | Msa0167400:CDS |
| AAGGCACCAATGTTGATCAA+GGG | 0.623746 | 1_4:-49285941 | Msa0167400:CDS |
| CCGACATCCAGAAAATTGGC+AGG | 0.624013 | 1_4:+49286750 | None:intergenic |
| AAATGCTTTAATAGCTACTG+CGG | 0.631453 | 1_4:+49285605 | None:intergenic |
| TGCATTCCCCGGTCAAAACG+AGG | 0.636965 | 1_4:-49290065 | Msa0167400:intron |
| AGGGTTAGCAATGGCCACAA+TGG | 0.643855 | 1_4:-49286799 | Msa0167400:CDS |
| CGAGAGGGACCTGATACTCG+TGG | 0.643858 | 1_4:+49290298 | None:intergenic |
| ACCCTAACAACAATGGTCAG+AGG | 0.649848 | 1_4:-49290399 | Msa0167400:exon |
| GAATGGAGCAGGGTTAGCAA+TGG | 0.649914 | 1_4:-49286808 | Msa0167400:CDS |
| GCACATTGTTAAGACTGACC+AGG | 0.652128 | 1_4:-49289622 | Msa0167400:CDS |
| TACCAGCTATATCTTCAACC+TGG | 0.653753 | 1_4:+49289604 | None:intergenic |
| ATCCAAAACCCTAACAACAA+TGG | 0.659235 | 1_4:-49290406 | Msa0167400:exon |
| GATACTCGTGGATGTTGAGA+CGG | 0.670255 | 1_4:+49290310 | None:intergenic |
| AACACAAGAGGATCCTCGAG+AGG | 0.699355 | 1_4:-49287774 | Msa0167400:intron |
| ACTCGTGGATGTTGAGACGG+CGG | 0.714705 | 1_4:+49290313 | None:intergenic |
| GATATAATTAAGTTGCATGG+CGG | 0.729232 | 1_4:-49286777 | Msa0167400:CDS |
| GCTGCATGGTGAATGGAGCA+GGG | 0.729760 | 1_4:-49286818 | Msa0167400:CDS |
| TTCACAGATCAATCCCATGG+CGG | 0.738791 | 1_4:-49287894 | Msa0167400:intron |
| TATGGAGTTAACGTTCCCAG+AGG | 0.766145 | 1_4:-49290133 | Msa0167400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAATACTTATGAA+TGG | + | chr1_4:49286309-49286328 | None:intergenic | 10.0% |
| !! | GTATATATAAATAAAACAAT+TGG | + | chr1_4:49287014-49287033 | None:intergenic | 10.0% |
| !!! | AAAATAAGATTTTAATAATC+AGG | + | chr1_4:49288829-49288848 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTTTAACTAATTG+AGG | - | chr1_4:49285862-49285881 | Msa0167400:intron | 15.0% |
| !!! | ATTAAAACATTTTGCAATTA+TGG | + | chr1_4:49285906-49285925 | None:intergenic | 15.0% |
| !!! | CATTTTATATAGAATTAGAA+AGG | + | chr1_4:49286281-49286300 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTGATTTTTTTT+TGG | - | chr1_4:49286376-49286395 | Msa0167400:intron | 15.0% |
| !! | AAAAAAATAAATAATCCAGT+TGG | + | chr1_4:49286918-49286937 | None:intergenic | 15.0% |
| !!! | TTTAAAATAAAATGGAAGAT+CGG | + | chr1_4:49287131-49287150 | None:intergenic | 15.0% |
| !! | TACGTATATATAAAAAAAAG+TGG | + | chr1_4:49287175-49287194 | None:intergenic | 15.0% |
| !! | TGTAAAAAAAATTAGACAAT+TGG | + | chr1_4:49287251-49287270 | None:intergenic | 15.0% |
| !!! | AATTGTCTAATTTTTTTTAC+AGG | - | chr1_4:49287250-49287269 | Msa0167400:intron | 15.0% |
| !! | TTATTATTGGTCAAATTTAA+AGG | + | chr1_4:49287456-49287475 | None:intergenic | 15.0% |
| !!! | TTATTTTATTTTAAAAGCAC+TGG | - | chr1_4:49289759-49289778 | Msa0167400:intron | 15.0% |
| !!! | TATTTTATTTTAAAAGCACT+GGG | - | chr1_4:49289760-49289779 | Msa0167400:intron | 15.0% |
| !! | TTCAAATTTGAATGTTTAAT+TGG | - | chr1_4:49290425-49290444 | Msa0167400:five_prime_UTR | 15.0% |
| !!! | TAAAGTTTTTATCTTACATT+TGG | - | chr1_4:49290458-49290477 | Msa0167400:five_prime_UTR | 15.0% |
| !! | TGATGTTTATTTAAATCGAT+CGG | - | chr1_4:49285599-49285618 | Msa0167400:three_prime_UTR | 20.0% |
| !!! | TTTTCAATTTTCGTGAAATT+AGG | - | chr1_4:49285623-49285642 | Msa0167400:three_prime_UTR | 20.0% |
| !!! | TTTCAATTTTCGTGAAATTA+GGG | - | chr1_4:49285624-49285643 | Msa0167400:three_prime_UTR | 20.0% |
| !!! | AAAATGTTTTAATGCATGTT+TGG | - | chr1_4:49285913-49285932 | Msa0167400:intron | 20.0% |
| !!! | AGTATAACCTTTAAAATTCA+CGG | + | chr1_4:49285974-49285993 | None:intergenic | 20.0% |
| !! | TATTCAATTTGAATTTAGAG+AGG | - | chr1_4:49286325-49286344 | Msa0167400:intron | 20.0% |
| !!! | ACTTGATAATCTAGATTTTT+TGG | - | chr1_4:49286362-49286381 | Msa0167400:intron | 20.0% |
| !!! | TTTTAGAGAACAAAATTGTT+TGG | + | chr1_4:49286570-49286589 | None:intergenic | 20.0% |
| !!! | AAAGTTTAGTCATTTTTTTC+TGG | - | chr1_4:49286770-49286789 | Msa0167400:CDS | 20.0% |
| !! | TATACACTTAAAACCATTTA+TGG | - | chr1_4:49286973-49286992 | Msa0167400:intron | 20.0% |
| !! | TTAAAACCATTTATGGTATT+TGG | - | chr1_4:49286980-49286999 | Msa0167400:intron | 20.0% |
| !! | TTAAAATAAAATGGAAGATC+GGG | + | chr1_4:49287130-49287149 | None:intergenic | 20.0% |
| !!! | GTATGCGTTTTAAAATAAAA+TGG | + | chr1_4:49287139-49287158 | None:intergenic | 20.0% |
| !! | ATAAAGTAATATACTGACAT+AGG | + | chr1_4:49287361-49287380 | None:intergenic | 20.0% |
| !! | CTTATTATTGCTTGTAAAAA+GGG | - | chr1_4:49287520-49287539 | Msa0167400:intron | 20.0% |
| !!! | ATTTCTGTTTTATATTACAC+AGG | - | chr1_4:49288067-49288086 | Msa0167400:CDS | 20.0% |
| !!! | TGTGTCTTTTAACTTTTTTT+TGG | - | chr1_4:49288901-49288920 | Msa0167400:intron | 20.0% |
| !!! | TTTTAACTTTTTTTTGGATC+AGG | - | chr1_4:49288907-49288926 | Msa0167400:intron | 20.0% |
| !! | AAGGCAGATTTAAATTATAT+TGG | - | chr1_4:49288941-49288960 | Msa0167400:intron | 20.0% |
| !! | AGGCAGATTTAAATTATATT+GGG | - | chr1_4:49288942-49288961 | Msa0167400:intron | 20.0% |
| !!! | TTAAATTATATTGGGTTAGA+TGG | - | chr1_4:49288950-49288969 | Msa0167400:intron | 20.0% |
| !! | TTACTATAATTATGTGAATC+AGG | - | chr1_4:49289283-49289302 | Msa0167400:intron | 20.0% |
| !!! | AGAATAAAGCTGTTTTTAAA+CGG | + | chr1_4:49289474-49289493 | None:intergenic | 20.0% |
| !! | ACTATATAAAACTGCTAATA+AGG | + | chr1_4:49289563-49289582 | None:intergenic | 20.0% |
| !!! | TTATTAGCAGTTTTATATAG+TGG | - | chr1_4:49289562-49289581 | Msa0167400:intron | 20.0% |
| !!! | TTTATATAGTGGTTTTTGTT+TGG | - | chr1_4:49289573-49289592 | Msa0167400:intron | 20.0% |
| !!! | ATTTTATTTTAAAAGCACTG+GGG | - | chr1_4:49289761-49289780 | Msa0167400:intron | 20.0% |
| !!! | TAATCTTGCTGTTATTTTTT+AGG | - | chr1_4:49289802-49289821 | Msa0167400:intron | 20.0% |
| !! | GAAAAAAAAACTTTACCAAA+TGG | + | chr1_4:49290486-49290505 | None:intergenic | 20.0% |
| !! | AACAAAATAAACTTAAACCT+TGG | + | chr1_4:49290508-49290527 | None:intergenic | 20.0% |
| ! | GATGTTTATTTAAATCGATC+GGG | - | chr1_4:49285600-49285619 | Msa0167400:three_prime_UTR | 25.0% |
| ! | TATGGAAAACTTCATAACAA+AGG | + | chr1_4:49285888-49285907 | None:intergenic | 25.0% |
| ! | TATATAGAATTAGAAAGGCA+TGG | + | chr1_4:49286276-49286295 | None:intergenic | 25.0% |
| ! | TTTGAATTTAGAGAGGTTAT+AGG | - | chr1_4:49286332-49286351 | Msa0167400:intron | 25.0% |
| !!! | TTGGTGATTTTTTTTTGGTT+TGG | - | chr1_4:49286381-49286400 | Msa0167400:intron | 25.0% |
| !!! | TTTGTCATTGTTGTTTTTTC+AGG | - | chr1_4:49286427-49286446 | Msa0167400:CDS | 25.0% |
| !!! | TTGTCATTGTTGTTTTTTCA+GGG | - | chr1_4:49286428-49286447 | Msa0167400:CDS | 25.0% |
| !! | TTCTCTAAAAATCGAAATTC+TGG | - | chr1_4:49286580-49286599 | Msa0167400:intron | 25.0% |
| !! | TATTTGAAATTTACACCCTT+TGG | - | chr1_4:49286668-49286687 | Msa0167400:intron | 25.0% |
| !!! | ATGGTTTTAAGTGTATAACT+TGG | + | chr1_4:49286970-49286989 | None:intergenic | 25.0% |
| ! | ATACGTAGAATATATATGCA+AGG | - | chr1_4:49287188-49287207 | Msa0167400:intron | 25.0% |
| ! | TACGTAGAATATATATGCAA+GGG | - | chr1_4:49287189-49287208 | Msa0167400:intron | 25.0% |
| ! | GCAACATAGATGTTTATTAT+TGG | + | chr1_4:49287469-49287488 | None:intergenic | 25.0% |
| ! | GCTTATTATTGCTTGTAAAA+AGG | - | chr1_4:49287519-49287538 | Msa0167400:intron | 25.0% |
| ! | ATTTCCAGACATGATTATTA+AGG | - | chr1_4:49287573-49287592 | Msa0167400:intron | 25.0% |
| !! | AACATCTTTTGTAACAATCA+GGG | - | chr1_4:49288234-49288253 | Msa0167400:CDS | 25.0% |
| ! | CGAAATAATAACCCAATATT+TGG | + | chr1_4:49288398-49288417 | None:intergenic | 25.0% |
| ! | AAATACATCATGTGAAATCT+TGG | + | chr1_4:49288803-49288822 | None:intergenic | 25.0% |
| ! | AACTGATGATAAGAAACAAA+AGG | + | chr1_4:49288858-49288877 | None:intergenic | 25.0% |
| ! | CAACTTAATTATATCCATTG+TGG | + | chr1_4:49289017-49289036 | None:intergenic | 25.0% |
| !! | ATGGATATAATTAAGTTGCA+TGG | - | chr1_4:49289019-49289038 | Msa0167400:intron | 25.0% |
| ! | ATATGAACAAAAACATCTCA+AGG | + | chr1_4:49289263-49289282 | None:intergenic | 25.0% |
| ! | TGGAACTATTTGATATTGAA+AGG | - | chr1_4:49289593-49289612 | Msa0167400:intron | 25.0% |
| !!! | TTTAATTTTGATCTATGACG+TGG | - | chr1_4:49289668-49289687 | Msa0167400:CDS | 25.0% |
| !!! | TTAATTTTGATCTATGACGT+GGG | - | chr1_4:49289669-49289688 | Msa0167400:CDS | 25.0% |
| !!! | ACAAACCATCTCTTTTAAAA+AGG | - | chr1_4:49289926-49289945 | Msa0167400:intron | 25.0% |
| ! | TTACAAATTATTGACGAGAA+GGG | - | chr1_4:49290142-49290161 | Msa0167400:CDS | 25.0% |
| ! | TTCCACATTATTGTTCAATT+AGG | - | chr1_4:49290233-49290252 | Msa0167400:intron | 25.0% |
| ! | AACCTAATTGAACAATAATG+TGG | + | chr1_4:49290238-49290257 | None:intergenic | 25.0% |
| ! | TCTTTCTTACATTTCAAGAT+AGG | - | chr1_4:49290279-49290298 | Msa0167400:intron | 25.0% |
| !! | TGAGGATCTTCAATTTATTT+TGG | - | chr1_4:49290394-49290413 | Msa0167400:exon | 25.0% |
| !!! | TGGTAAAGTTTTTTTTTCCA+AGG | - | chr1_4:49290488-49290507 | Msa0167400:five_prime_UTR | 25.0% |
| !! | AAAATTCTAGGGTGTAGTAT+TGG | - | chr1_4:49285280-49285299 | Msa0167400:three_prime_UTR | 30.0% |
| TATAGGTCTTTCTTCAACTA+TGG | + | chr1_4:49285334-49285353 | None:intergenic | 30.0% | |
| AATTATGGTCTACAGAATCA+TGG | + | chr1_4:49285764-49285783 | None:intergenic | 30.0% | |
| TTTACAAAATCACAAGACTC+TGG | - | chr1_4:49286002-49286021 | Msa0167400:intron | 30.0% | |
| !! | GTTAAGAGTCAAATTTTAGC+CGG | - | chr1_4:49286109-49286128 | Msa0167400:intron | 30.0% |
| ! | ACTTTCAAAAGTGGTTTTCA+GGG | - | chr1_4:49286148-49286167 | Msa0167400:intron | 30.0% |
| TTGAACTGAGAAACAACAAA+GGG | + | chr1_4:49286230-49286249 | None:intergenic | 30.0% | |
| ATTGAACTGAGAAACAACAA+AGG | + | chr1_4:49286231-49286250 | None:intergenic | 30.0% | |
| ATGGACATGAAATGAAAACA+AGG | + | chr1_4:49286257-49286276 | None:intergenic | 30.0% | |
| ATACTAGTTACAAAACAGTC+AGG | - | chr1_4:49286466-49286485 | Msa0167400:CDS | 30.0% | |
| ATGTAAAGAAAAAAGTCCCA+CGG | + | chr1_4:49286700-49286719 | None:intergenic | 30.0% | |
| TTTACATGCAATATGTCTGT+CGG | - | chr1_4:49286713-49286732 | Msa0167400:intron | 30.0% | |
| !!! | TTTTTTTAAAAGTGGCCAAC+TGG | - | chr1_4:49286933-49286952 | Msa0167400:intron | 30.0% |
| AACCATTTATGGTATTTGGT+AGG | - | chr1_4:49286984-49287003 | Msa0167400:intron | 30.0% | |
| AAAAACCACTTGGAATCTAA+CGG | + | chr1_4:49287039-49287058 | None:intergenic | 30.0% | |
| TGATCAATACAAAAACCACT+TGG | + | chr1_4:49287049-49287068 | None:intergenic | 30.0% | |
| !! | AGTGGTTTTTGTATTGATCA+TGG | - | chr1_4:49287049-49287068 | Msa0167400:intron | 30.0% |
| ! | GGAAGTAAATTTTCGTCAAT+TGG | - | chr1_4:49287070-49287089 | Msa0167400:intron | 30.0% |
| ACGTAGAATATATATGCAAG+GGG | - | chr1_4:49287190-49287209 | Msa0167400:intron | 30.0% | |
| ! | AATGTACTTTGCTATAACTC+TGG | - | chr1_4:49287307-49287326 | Msa0167400:intron | 30.0% |
| ATTATTGCTTGTAAAAAGGG+AGG | - | chr1_4:49287523-49287542 | Msa0167400:intron | 30.0% | |
| CAAACCTTAATAATCATGTC+TGG | + | chr1_4:49287580-49287599 | None:intergenic | 30.0% | |
| GAAGTTTGAATATCTCTTTC+TGG | + | chr1_4:49287998-49288017 | None:intergenic | 30.0% | |
| ! | GAACATCTTTTGTAACAATC+AGG | - | chr1_4:49288233-49288252 | Msa0167400:CDS | 30.0% |
| TCTGCATGTAAACCAAATAT+TGG | - | chr1_4:49288383-49288402 | Msa0167400:intron | 30.0% | |
| CTGCATGTAAACCAAATATT+GGG | - | chr1_4:49288384-49288403 | Msa0167400:intron | 30.0% | |
| ATTGGGTTATTATTTCGACA+AGG | - | chr1_4:49288401-49288420 | Msa0167400:intron | 30.0% | |
| AATTGTCCTGGATAAAATGT+TGG | - | chr1_4:49288435-49288454 | Msa0167400:intron | 30.0% | |
| TTGTGCTTATGATACAGTTA+TGG | - | chr1_4:49288588-49288607 | Msa0167400:intron | 30.0% | |
| TGTATGTAGCTAATTAAGCT+AGG | + | chr1_4:49288683-49288702 | None:intergenic | 30.0% | |
| !!! | GCTTTTGAAGTTTTGATATC+CGG | - | chr1_4:49288724-49288743 | Msa0167400:intron | 30.0% |
| !!! | TAACTTTTTTTTGGATCAGG+TGG | - | chr1_4:49288910-49288929 | Msa0167400:intron | 30.0% |
| ! | GATATAATTAAGTTGCATGG+CGG | - | chr1_4:49289022-49289041 | Msa0167400:intron | 30.0% |
| ATAAAAACCCTCTGAATTTC+AGG | + | chr1_4:49289178-49289197 | None:intergenic | 30.0% | |
| CTATAATTATGTGAATCAGG+TGG | - | chr1_4:49289286-49289305 | Msa0167400:intron | 30.0% | |
| !!! | GCTATTTTGGTTAACATCTT+TGG | - | chr1_4:49289350-49289369 | Msa0167400:CDS | 30.0% |
| !!! | ATTTTGGTTAACATCTTTGG+TGG | - | chr1_4:49289353-49289372 | Msa0167400:CDS | 30.0% |
| !! | AAACGGCATCAATTTTGTTT+TGG | + | chr1_4:49289457-49289476 | None:intergenic | 30.0% |
| TTCTTTCTCCTACATATGAT+AGG | - | chr1_4:49289490-49289509 | Msa0167400:intron | 30.0% | |
| TCTTTCTCCTACATATGATA+GGG | - | chr1_4:49289491-49289510 | Msa0167400:intron | 30.0% | |
| !! | TGCTTCCTTTTTAAAAGAGA+TGG | + | chr1_4:49289934-49289953 | None:intergenic | 30.0% |
| TTCATTGTGAATGTTTCAAC+AGG | - | chr1_4:49289988-49290007 | Msa0167400:intron | 30.0% | |
| AAGTGGTATGGCATTAATAA+CGG | - | chr1_4:49290012-49290031 | Msa0167400:intron | 30.0% | |
| ATTAATAACGGCTGAAGATT+TGG | - | chr1_4:49290024-49290043 | Msa0167400:intron | 30.0% | |
| AAATTGCGTTGTAACTAAAC+TGG | + | chr1_4:49290114-49290133 | None:intergenic | 30.0% | |
| ! | TCGTCAATAATTTGTAACTC+AGG | + | chr1_4:49290139-49290158 | None:intergenic | 30.0% |
| GTTACAAATTATTGACGAGA+AGG | - | chr1_4:49290141-49290160 | Msa0167400:CDS | 30.0% | |
| AAATGCTTTAATAGCTACTG+CGG | + | chr1_4:49290197-49290216 | None:intergenic | 30.0% | |
| !! | TGTGGAAAGTGTTTACTTAT+TGG | + | chr1_4:49290220-49290239 | None:intergenic | 30.0% |
| AATACAGTCTGTTGAACATA+TGG | - | chr1_4:49290339-49290358 | Msa0167400:CDS | 30.0% | |
| ! | ATCTTACATTTGGTTCCATT+TGG | - | chr1_4:49290468-49290487 | Msa0167400:five_prime_UTR | 30.0% |
| ! | GAACTTGATTCGATCGATAT+AGG | + | chr1_4:49285351-49285370 | None:intergenic | 35.0% |
| !!! | TTGTTGTTAGGGTTTTGGAT+CGG | + | chr1_4:49285393-49285412 | None:intergenic | 35.0% |
| ATCCAAAACCCTAACAACAA+TGG | - | chr1_4:49285393-49285412 | Msa0167400:three_prime_UTR | 35.0% | |
| TGAATAAACGAATCTCGAGA+GGG | + | chr1_4:49285519-49285538 | None:intergenic | 35.0% | |
| GCTGAATTGATGAGCAAATA+TGG | - | chr1_4:49285648-49285667 | Msa0167400:three_prime_UTR | 35.0% | |
| ! | TTTTCTGACTTCTTCAACTG+AGG | + | chr1_4:49285703-49285722 | None:intergenic | 35.0% |
| ! | TCAAGTGATGGTGTGAATTA+TGG | + | chr1_4:49285779-49285798 | None:intergenic | 35.0% |
| TTAAAATTCACGGTAGCTCA+CGG | + | chr1_4:49285964-49285983 | None:intergenic | 35.0% | |
| ! | TGAGCTACCGTGAATTTTAA+AGG | - | chr1_4:49285964-49285983 | Msa0167400:CDS | 35.0% |
| ! | GACTTTCAAAAGTGGTTTTC+AGG | - | chr1_4:49286147-49286166 | Msa0167400:intron | 35.0% |
| !!! | TTTTTTCAGGGAAGATGCTT+GGG | - | chr1_4:49286440-49286459 | Msa0167400:CDS | 35.0% |
| ! | TTGCTAACAATTTTTCCCTG+AGG | + | chr1_4:49286493-49286512 | None:intergenic | 35.0% |
| TCAGGGAAAAATTGTTAGCA+AGG | - | chr1_4:49286492-49286511 | Msa0167400:CDS | 35.0% | |
| TTGGATAACAAATGTCCAGT+TGG | + | chr1_4:49286951-49286970 | None:intergenic | 35.0% | |
| AGCCTACCAAATACCATAAA+TGG | + | chr1_4:49286989-49287008 | None:intergenic | 35.0% | |
| CGTAGAATATATATGCAAGG+GGG | - | chr1_4:49287191-49287210 | Msa0167400:intron | 35.0% | |
| TACTGACATAGGAAACTTAC+CGG | + | chr1_4:49287350-49287369 | None:intergenic | 35.0% | |
| ! | TGTCTGGAAATTTTTCTGCA+AGG | + | chr1_4:49287564-49287583 | None:intergenic | 35.0% |
| TGTTACTCTTGACATTTCTC+TGG | - | chr1_4:49287598-49287617 | Msa0167400:intron | 35.0% | |
| GTTACTCTTGACATTTCTCT+GGG | - | chr1_4:49287599-49287618 | Msa0167400:intron | 35.0% | |
| ! | ATGCATTCCTTCTTTCTAGT+AGG | - | chr1_4:49287647-49287666 | Msa0167400:intron | 35.0% |
| !! | GTACCTGTTGATGTTTTTGA+AGG | - | chr1_4:49287669-49287688 | Msa0167400:intron | 35.0% |
| AGTCCTTCAAAAACATCAAC+AGG | + | chr1_4:49287675-49287694 | None:intergenic | 35.0% | |
| ! | TGATTTCTATCAGCCACTTT+AGG | + | chr1_4:49287738-49287757 | None:intergenic | 35.0% |
| CCCAACCCAAAAATATATCA+GGG | + | chr1_4:49288159-49288178 | None:intergenic | 35.0% | |
| !!! | CCCTGATATATTTTTGGGTT+GGG | - | chr1_4:49288156-49288175 | Msa0167400:intron | 35.0% |
| ACCCAACCCAAAAATATATC+AGG | + | chr1_4:49288160-49288179 | None:intergenic | 35.0% | |
| GTTGGGTTCAATTCACATTT+CGG | - | chr1_4:49288173-49288192 | Msa0167400:intron | 35.0% | |
| TTGGGTTCAATTCACATTTC+GGG | - | chr1_4:49288174-49288193 | Msa0167400:intron | 35.0% | |
| GATGTTCTACAATATTGTGC+AGG | + | chr1_4:49288220-49288239 | None:intergenic | 35.0% | |
| ! | CATTTTATCCAGGACAATTC+TGG | + | chr1_4:49288434-49288453 | None:intergenic | 35.0% |
| ! | CACAATCCAACATTTTATCC+AGG | + | chr1_4:49288444-49288463 | None:intergenic | 35.0% |
| TGTATAAGACAGGATGAGAT+GGG | + | chr1_4:49288489-49288508 | None:intergenic | 35.0% | |
| ! | TTTAGGAGTGTGTATAAGAC+AGG | + | chr1_4:49288499-49288518 | None:intergenic | 35.0% |
| !! | TTAAGCTAGGCTCTAAGTTT+AGG | + | chr1_4:49288516-49288535 | None:intergenic | 35.0% |
| !! | TAAGCTAGGCTCTAAGTTTA+GGG | + | chr1_4:49288515-49288534 | None:intergenic | 35.0% |
| !! | TTAAGCTAGGCTCTAAGTTT+AGG | + | chr1_4:49288516-49288535 | None:intergenic | 35.0% |
| ! | ATTGGGTTAGATGGAGAAAT+TGG | - | chr1_4:49288959-49288978 | Msa0167400:intron | 35.0% |
| !! | ATACATTACCTGGTTTTCAG+AGG | + | chr1_4:49289083-49289102 | None:intergenic | 35.0% |
| CTTGTCTGTAATACATTACC+TGG | + | chr1_4:49289093-49289112 | None:intergenic | 35.0% | |
| ! | AGACAAGATTGCTCTCATTT+TGG | - | chr1_4:49289106-49289125 | Msa0167400:intron | 35.0% |
| TAAGATTGAGATGTCTGCTT+TGG | - | chr1_4:49289146-49289165 | Msa0167400:intron | 35.0% | |
| GCATTAACCTGAAATTCAGA+GGG | - | chr1_4:49289168-49289187 | Msa0167400:intron | 35.0% | |
| TAGTGAGTAGCAACAACTAA+AGG | + | chr1_4:49289212-49289231 | None:intergenic | 35.0% | |
| AGATACCACCTTCAATGATT+TGG | - | chr1_4:49289231-49289250 | Msa0167400:intron | 35.0% | |
| ! | TGACAAAGTGAAGGCTATTT+TGG | - | chr1_4:49289337-49289356 | Msa0167400:CDS | 35.0% |
| AAGTGTGATGTTATAGCAAG+TGG | - | chr1_4:49289383-49289402 | Msa0167400:intron | 35.0% | |
| GTTCATTCCCTATCATATGT+AGG | + | chr1_4:49289501-49289520 | None:intergenic | 35.0% | |
| ACATATGATAGGGAATGAAC+AGG | - | chr1_4:49289501-49289520 | Msa0167400:intron | 35.0% | |
| CATATGATAGGGAATGAACA+GGG | - | chr1_4:49289502-49289521 | Msa0167400:intron | 35.0% | |
| TATGACGTGGGTTTAGATAT+TGG | - | chr1_4:49289681-49289700 | Msa0167400:CDS | 35.0% | |
| !!! | TATTTTAAAAGCACTGGGGT+CGG | - | chr1_4:49289765-49289784 | Msa0167400:intron | 35.0% |
| TGAATGTTTCAACAGGAAAG+TGG | - | chr1_4:49289995-49290014 | Msa0167400:intron | 35.0% | |
| ! | GACTGTATTTTCATGTTCAC+TGG | + | chr1_4:49290328-49290347 | None:intergenic | 35.0% |
| !!! | AAAACGGCTGCTTTTAATTG+AGG | - | chr1_4:49290376-49290395 | Msa0167400:CDS | 35.0% |
| CGGATTCGATTGAGGAAAAA+TGG | + | chr1_4:49285373-49285392 | None:intergenic | 40.0% | |
| ! | TTTTGGATCGGATTCGATTG+AGG | + | chr1_4:49285381-49285400 | None:intergenic | 40.0% |
| !! | GACCATTGTTGTTAGGGTTT+TGG | + | chr1_4:49285398-49285417 | None:intergenic | 40.0% |
| ! | TCCTCTGACCATTGTTGTTA+GGG | + | chr1_4:49285404-49285423 | None:intergenic | 40.0% |
| ! | ATCCTCTGACCATTGTTGTT+AGG | + | chr1_4:49285405-49285424 | None:intergenic | 40.0% |
| GTGAATAAACGAATCTCGAG+AGG | + | chr1_4:49285520-49285539 | None:intergenic | 40.0% | |
| !! | ATGGATTACCTCGTTTTGAC+CGG | + | chr1_4:49285745-49285764 | None:intergenic | 40.0% |
| TTTGAGCGAACATCAAGTGA+TGG | + | chr1_4:49285791-49285810 | None:intergenic | 40.0% | |
| ATGCATGTTTGGTATCACGA+CGG | - | chr1_4:49285924-49285943 | Msa0167400:intron | 40.0% | |
| CTCATGTTCAGTATCACTGT+CGG | + | chr1_4:49286032-49286051 | None:intergenic | 40.0% | |
| ACAGTGATACTGAACATGAG+TGG | - | chr1_4:49286032-49286051 | Msa0167400:intron | 40.0% | |
| !!! | GGAGAATTTTGACTGTGATG+AGG | - | chr1_4:49286053-49286072 | Msa0167400:intron | 40.0% |
| !!! | ATTTTGACTGTGATGAGGAG+TGG | - | chr1_4:49286058-49286077 | Msa0167400:intron | 40.0% |
| AACTGGGATTATTGTGCAGT+TGG | - | chr1_4:49286084-49286103 | Msa0167400:intron | 40.0% | |
| !! | AAGAGTCAAATTTTAGCCGG+TGG | - | chr1_4:49286112-49286131 | Msa0167400:intron | 40.0% |
| !! | TTCAAAAGTGGTTTTCAGGG+AGG | - | chr1_4:49286151-49286170 | Msa0167400:intron | 40.0% |
| TACCAGCTATATCTTCAACC+TGG | + | chr1_4:49286198-49286217 | None:intergenic | 40.0% | |
| ATGACGATGACAACAGCAAT+AGG | + | chr1_4:49286408-49286427 | None:intergenic | 40.0% | |
| !!! | GTTTTTTCAGGGAAGATGCT+TGG | - | chr1_4:49286439-49286458 | Msa0167400:CDS | 40.0% |
| AAAGAAAAAAGTCCCACGGT+GGG | + | chr1_4:49286696-49286715 | None:intergenic | 40.0% | |
| TAAAGAAAAAAGTCCCACGG+TGG | + | chr1_4:49286697-49286716 | None:intergenic | 40.0% | |
| AGCACTTGAAACTGGTAAAC+CGG | - | chr1_4:49286869-49286888 | Msa0167400:CDS | 40.0% | |
| AACTGGTAAACCGGTACAAA+TGG | - | chr1_4:49286878-49286897 | Msa0167400:intron | 40.0% | |
| TACTTCCGTTAGATTCCAAG+TGG | - | chr1_4:49287031-49287050 | Msa0167400:intron | 40.0% | |
| CTAGAAAGAAGGAATGCATC+AGG | + | chr1_4:49287646-49287665 | None:intergenic | 40.0% | |
| ACAGGTACCTACTAGAAAGA+AGG | + | chr1_4:49287657-49287676 | None:intergenic | 40.0% | |
| TACTGATGAAGATGCTGCAA+AGG | - | chr1_4:49287695-49287714 | Msa0167400:intron | 40.0% | |
| !! | TGCAAAGGTTGTTGATGGTT+TGG | - | chr1_4:49287710-49287729 | Msa0167400:intron | 40.0% |
| ! | TGATTCTGACTGCACTCTTT+TGG | - | chr1_4:49287797-49287816 | Msa0167400:CDS | 40.0% |
| TCTTTCACAGATCAATCCCA+TGG | - | chr1_4:49287902-49287921 | Msa0167400:intron | 40.0% | |
| ! | TATCTCTTTCTGGCGATATG+CGG | + | chr1_4:49287988-49288007 | None:intergenic | 40.0% |
| ACTTCGTGATACAACACAAG+AGG | - | chr1_4:49288013-49288032 | Msa0167400:CDS | 40.0% | |
| GCATTTAACTATACCTCTCG+AGG | + | chr1_4:49288041-49288060 | None:intergenic | 40.0% | |
| ! | TGGACTCAAGTTGTAATGAC+GGG | + | chr1_4:49288120-49288139 | None:intergenic | 40.0% |
| ! | CTGGACTCAAGTTGTAATGA+CGG | + | chr1_4:49288121-49288140 | None:intergenic | 40.0% |
| GTCATTACAACTTGAGTCCA+GGG | - | chr1_4:49288120-49288139 | Msa0167400:CDS | 40.0% | |
| TCATTACAACTTGAGTCCAG+GGG | - | chr1_4:49288121-49288140 | Msa0167400:CDS | 40.0% | |
| ! | AGCCAGCCCTGATATATTTT+TGG | - | chr1_4:49288150-49288169 | Msa0167400:intron | 40.0% |
| ! | GCCAGCCCTGATATATTTTT+GGG | - | chr1_4:49288151-49288170 | Msa0167400:intron | 40.0% |
| ACCCAAAAATATATCAGGGC+TGG | + | chr1_4:49288155-49288174 | None:intergenic | 40.0% | |
| !!! | GCCCTGATATATTTTTGGGT+TGG | - | chr1_4:49288155-49288174 | Msa0167400:intron | 40.0% |
| GTGTATAAGACAGGATGAGA+TGG | + | chr1_4:49288490-49288509 | None:intergenic | 40.0% | |
| CGCAAGTAGCTAATTAAGCT+AGG | + | chr1_4:49288529-49288548 | None:intergenic | 40.0% | |
| ACACTGATGCTTTCGATATC+TGG | - | chr1_4:49288562-49288581 | Msa0167400:intron | 40.0% | |
| TACAGTTATGGAGTGAAGTG+AGG | - | chr1_4:49288600-49288619 | Msa0167400:intron | 40.0% | |
| GAGTGAAGTGAGGTTCTATA+TGG | - | chr1_4:49288610-49288629 | Msa0167400:intron | 40.0% | |
| !! | TTTAGGGGTGCTTATGAAAC+AGG | + | chr1_4:49288653-49288672 | None:intergenic | 40.0% |
| !! | AAGCTAGGCTCTAAGTTTAG+GGG | + | chr1_4:49288514-49288533 | None:intergenic | 40.0% |
| GGCATTAACCTGAAATTCAG+AGG | - | chr1_4:49289167-49289186 | Msa0167400:intron | 40.0% | |
| AGAGACCAAATCATTGAAGG+TGG | + | chr1_4:49289239-49289258 | None:intergenic | 40.0% | |
| AATAGTGAATGCTGCAAAGC+AGG | - | chr1_4:49289406-49289425 | Msa0167400:intron | 40.0% | |
| !!! | ATTTTAAAAGCACTGGGGTC+GGG | - | chr1_4:49289766-49289785 | Msa0167400:intron | 40.0% |
| CCTTCAAGACGAACTATTAC+TGG | + | chr1_4:49289842-49289861 | None:intergenic | 40.0% | |
| CCAGTAATAGTTCGTCTTGA+AGG | - | chr1_4:49289839-49289858 | Msa0167400:intron | 40.0% | |
| ! | AAGGCACCAATGTTGATCAA+GGG | - | chr1_4:49289858-49289877 | Msa0167400:intron | 40.0% |
| ! | GCTTTTCCCTTGATCAACAT+TGG | + | chr1_4:49289867-49289886 | None:intergenic | 40.0% |
| !! | TCAAGGGAAAAGCATTCTGA+AGG | - | chr1_4:49289874-49289893 | Msa0167400:intron | 40.0% |
| GTTTCAACAGGAAAGTGGTA+TGG | - | chr1_4:49290000-49290019 | Msa0167400:intron | 40.0% | |
| GGTTTATGCATGTGATTGCA+TGG | - | chr1_4:49290254-49290273 | Msa0167400:intron | 40.0% | |
| TGAACATATGGTTCACCGAT+TGG | - | chr1_4:49290351-49290370 | Msa0167400:CDS | 40.0% | |
| ACCCTAACAACAATGGTCAG+AGG | - | chr1_4:49285400-49285419 | Msa0167400:three_prime_UTR | 45.0% | |
| GATACTCGTGGATGTTGAGA+CGG | + | chr1_4:49285492-49285511 | None:intergenic | 45.0% | |
| TCTCAACATCCACGAGTATC+AGG | - | chr1_4:49285492-49285511 | Msa0167400:three_prime_UTR | 45.0% | |
| TATGGAGTTAACGTTCCCAG+AGG | - | chr1_4:49285666-49285685 | Msa0167400:three_prime_UTR | 45.0% | |
| !! | TGGATTACCTCGTTTTGACC+GGG | + | chr1_4:49285744-49285763 | None:intergenic | 45.0% |
| TGCATGTTTGGTATCACGAC+GGG | - | chr1_4:49285925-49285944 | Msa0167400:intron | 45.0% | |
| TGATGAGGAGTGGTGTAACT+GGG | - | chr1_4:49286068-49286087 | Msa0167400:intron | 45.0% | |
| TGGGATTATTGTGCAGTTGG+TGG | - | chr1_4:49286087-49286106 | Msa0167400:intron | 45.0% | |
| GGATTGGGGACTTTCAAAAG+TGG | - | chr1_4:49286139-49286158 | Msa0167400:intron | 45.0% | |
| GCACATTGTTAAGACTGACC+AGG | - | chr1_4:49286177-49286196 | Msa0167400:intron | 45.0% | |
| ! | GACCAGGTTGAAGATATAGC+TGG | - | chr1_4:49286193-49286212 | Msa0167400:intron | 45.0% |
| TACAAAACAGTCAGGTCCTC+AGG | - | chr1_4:49286474-49286493 | Msa0167400:CDS | 45.0% | |
| ACAAAACAGTCAGGTCCTCA+GGG | - | chr1_4:49286475-49286494 | Msa0167400:CDS | 45.0% | |
| ATGCAATATGTCTGTCGGAG+AGG | - | chr1_4:49286718-49286737 | Msa0167400:intron | 45.0% | |
| ! | TTTTTCTGGACTGATCCTGC+TGG | - | chr1_4:49286784-49286803 | Msa0167400:CDS | 45.0% |
| CTGAAATCCAACGCCCAAAT+TGG | + | chr1_4:49286835-49286854 | None:intergenic | 45.0% | |
| !! | TACCAGTTTCAAGTGCTGGT+CGG | + | chr1_4:49286866-49286885 | None:intergenic | 45.0% |
| ! | GGTTTACCAGTTTCAAGTGC+TGG | + | chr1_4:49286870-49286889 | None:intergenic | 45.0% |
| TTCTGCAAGGTCTTCAATGC+TGG | + | chr1_4:49287551-49287570 | None:intergenic | 45.0% | |
| GATGCTGCAAAGGTTGTTGA+TGG | - | chr1_4:49287705-49287724 | Msa0167400:intron | 45.0% | |
| ! | TGATGGTTTGGCTCCTAAAG+TGG | - | chr1_4:49287722-49287741 | Msa0167400:intron | 45.0% |
| TTCACAGATCAATCCCATGG+CGG | - | chr1_4:49287905-49287924 | Msa0167400:intron | 45.0% | |
| TAGCATCAGCAGCTACTAGT+TGG | + | chr1_4:49287944-49287963 | None:intergenic | 45.0% | |
| ! | TCAAGTTGTAATGACGGGGT+GGG | + | chr1_4:49288115-49288134 | None:intergenic | 45.0% |
| ! | GGACTCAAGTTGTAATGACG+GGG | + | chr1_4:49288119-49288138 | None:intergenic | 45.0% |
| CGTCATTACAACTTGAGTCC+AGG | - | chr1_4:49288119-49288138 | Msa0167400:CDS | 45.0% | |
| ! | CATTTCGGGTAAGCCTAAGT+CGG | - | chr1_4:49288188-49288207 | Msa0167400:intron | 45.0% |
| TACAGTTATGGAGTGGAGTG+AGG | - | chr1_4:49288762-49288781 | Msa0167400:intron | 45.0% | |
| !! | GAGTGGAGTGAGGTTCTAAA+TGG | - | chr1_4:49288772-49288791 | Msa0167400:intron | 45.0% |
| AGATGGAGAAATTGGCTGCA+TGG | - | chr1_4:49288967-49288986 | Msa0167400:intron | 45.0% | |
| GAAATTGGCTGCATGGTGAA+TGG | - | chr1_4:49288974-49288993 | Msa0167400:intron | 45.0% | |
| ! | CCTGCCAATTTTCTGGATGT+CGG | - | chr1_4:49289049-49289068 | Msa0167400:intron | 45.0% |
| ACCACCGACATCCAGAAAAT+TGG | + | chr1_4:49289056-49289075 | None:intergenic | 45.0% | |
| GGCAGAGACCAAATCATTGA+AGG | + | chr1_4:49289242-49289261 | None:intergenic | 45.0% | |
| AACCGCTGATGACAAAGTGA+AGG | - | chr1_4:49289328-49289347 | Msa0167400:CDS | 45.0% | |
| AGCCTTCACTTTGTCATCAG+CGG | + | chr1_4:49289333-49289352 | None:intergenic | 45.0% | |
| !! | GAAGGCACCAATGTTGATCA+AGG | - | chr1_4:49289857-49289876 | Msa0167400:intron | 45.0% |
| ! | GGTTCACCGATTGGACAAAA+CGG | - | chr1_4:49290360-49290379 | Msa0167400:CDS | 45.0% |
| !! | AAGCAGCCGTTTTGTCCAAT+CGG | + | chr1_4:49290369-49290388 | None:intergenic | 45.0% |
| !! | AAAATAAAAATAAAAATTCT+AGG | - | chr1_4:49285268-49285287 | Msa0167400:three_prime_UTR | 5.0% |
| !! | AAATAAAAATAAAAATTCTA+GGG | - | chr1_4:49285269-49285288 | Msa0167400:three_prime_UTR | 5.0% |
| !!! | TATTTATTTTTTTTTAAAAG+TGG | - | chr1_4:49286925-49286944 | Msa0167400:intron | 5.0% |
| !!! | TATGAAATTTAAAATAAAAA+AGG | + | chr1_4:49288354-49288373 | None:intergenic | 5.0% |
| !!! | TTTTAAAATAAAATAAAGAA+AGG | + | chr1_4:49289755-49289774 | None:intergenic | 5.0% |
| !! | CTGTTGATTCTGCCATGTGC+CGG | + | chr1_4:49285464-49285483 | None:intergenic | 50.0% |
| GCCATCAAAGATGCATTCCC+CGG | - | chr1_4:49285723-49285742 | Msa0167400:exon | 50.0% | |
| ACCGGGGAATGCATCTTTGA+TGG | + | chr1_4:49285727-49285746 | None:intergenic | 50.0% | |
| !! | GGATTACCTCGTTTTGACCG+GGG | + | chr1_4:49285743-49285762 | None:intergenic | 50.0% |
| GTGATGAGGAGTGGTGTAAC+TGG | - | chr1_4:49286067-49286086 | Msa0167400:intron | 50.0% | |
| !! | CAAATTTTAGCCGGTGGACG+AGG | - | chr1_4:49286118-49286137 | Msa0167400:intron | 50.0% |
| AGTTTACCAGTCCAACCAGC+AGG | + | chr1_4:49286802-49286821 | None:intergenic | 50.0% | |
| !! | TGCTGGTTGGACTGGTAAAC+TGG | - | chr1_4:49286801-49286820 | Msa0167400:CDS | 50.0% |
| AACTGGCCACCAGACCAATT+TGG | - | chr1_4:49286818-49286837 | Msa0167400:CDS | 50.0% | |
| ACTGGCCACCAGACCAATTT+GGG | - | chr1_4:49286819-49286838 | Msa0167400:CDS | 50.0% | |
| ATCCAACGCCCAAATTGGTC+TGG | + | chr1_4:49286830-49286849 | None:intergenic | 50.0% | |
| AACCGACCAGCACTTGAAAC+TGG | - | chr1_4:49286861-49286880 | Msa0167400:CDS | 50.0% | |
| TCCAACGACGCCATTTGTAC+CGG | + | chr1_4:49286891-49286910 | None:intergenic | 50.0% | |
| TACAAATGGCGTCGTTGGAC+TGG | - | chr1_4:49286892-49286911 | Msa0167400:intron | 50.0% | |
| ACTCTGGATCGTAAGACTGC+TGG | - | chr1_4:49287323-49287342 | Msa0167400:intron | 50.0% | |
| TTATCAGCTGTCTCCGCCAT+GGG | + | chr1_4:49287921-49287940 | None:intergenic | 50.0% | |
| AACACAAGAGGATCCTCGAG+AGG | - | chr1_4:49288025-49288044 | Msa0167400:CDS | 50.0% | |
| ! | GTAATGACGGGGTGGGTTTA+GGG | + | chr1_4:49288108-49288127 | None:intergenic | 50.0% |
| ! | TGTAATGACGGGGTGGGTTT+AGG | + | chr1_4:49288109-49288128 | None:intergenic | 50.0% |
| ! | CTCAAGTTGTAATGACGGGG+TGG | + | chr1_4:49288116-49288135 | None:intergenic | 50.0% |
| GTCTGTCTCCAGAATTGTCC+TGG | - | chr1_4:49288423-49288442 | Msa0167400:intron | 50.0% | |
| ! | GAATGGAGCAGGGTTAGCAA+TGG | - | chr1_4:49288991-49289010 | Msa0167400:intron | 50.0% |
| ! | AGGGTTAGCAATGGCCACAA+TGG | - | chr1_4:49289000-49289019 | Msa0167400:intron | 50.0% |
| ! | CGGTACTCCTGCCAATTTTC+TGG | - | chr1_4:49289042-49289061 | Msa0167400:intron | 50.0% |
| CCGACATCCAGAAAATTGGC+AGG | + | chr1_4:49289052-49289071 | None:intergenic | 50.0% | |
| ! | GCCAATTTTCTGGATGTCGG+TGG | - | chr1_4:49289052-49289071 | Msa0167400:intron | 50.0% |
| ACTCGTGGATGTTGAGACGG+CGG | + | chr1_4:49285489-49285508 | None:intergenic | 55.0% | |
| ! | TAACGTTCCCAGAGGCGTAG+CGG | - | chr1_4:49285674-49285693 | Msa0167400:three_prime_UTR | 55.0% |
| TGCATTCCCCGGTCAAAACG+AGG | - | chr1_4:49285734-49285753 | Msa0167400:exon | 55.0% | |
| TTTAGCCGGTGGACGAGGAT+TGG | - | chr1_4:49286123-49286142 | Msa0167400:intron | 55.0% | |
| TTAGCCGGTGGACGAGGATT+GGG | - | chr1_4:49286124-49286143 | Msa0167400:intron | 55.0% | |
| TCTGGACTGATCCTGCTGGT+TGG | - | chr1_4:49286788-49286807 | Msa0167400:CDS | 55.0% | |
| ! | ACTGATCCTGCTGGTTGGAC+TGG | - | chr1_4:49286793-49286812 | Msa0167400:CDS | 55.0% |
| ! | CAACGCCCAAATTGGTCTGG+TGG | + | chr1_4:49286827-49286846 | None:intergenic | 55.0% |
| CACCAGACCAATTTGGGCGT+TGG | - | chr1_4:49286825-49286844 | Msa0167400:CDS | 55.0% | |
| ACCGGTACAAATGGCGTCGT+TGG | - | chr1_4:49286887-49286906 | Msa0167400:intron | 55.0% | |
| GGATCGTAAGACTGCTGGTC+CGG | - | chr1_4:49287328-49287347 | Msa0167400:intron | 55.0% | |
| GTTATCAGCTGTCTCCGCCA+TGG | + | chr1_4:49287922-49287941 | None:intergenic | 55.0% | |
| !! | GTGCAGGATAGTGCCGACTT+AGG | + | chr1_4:49288204-49288223 | None:intergenic | 55.0% |
| GCTGCATGGTGAATGGAGCA+GGG | - | chr1_4:49288981-49289000 | Msa0167400:intron | 55.0% | |
| !! | TGGTGCTGCCTCTGAAAACC+AGG | - | chr1_4:49289072-49289091 | Msa0167400:intron | 55.0% |
| ! | ATTCTGCCATGTGCCGGCGA+CGG | + | chr1_4:49285458-49285477 | None:intergenic | 60.0% |
| CGAGAGGGACCTGATACTCG+TGG | + | chr1_4:49285504-49285523 | None:intergenic | 60.0% | |
| GAGGAAACCGCTACGCCTCT+GGG | + | chr1_4:49285684-49285703 | None:intergenic | 60.0% | |
| TGAGGAAACCGCTACGCCTC+TGG | + | chr1_4:49285685-49285704 | None:intergenic | 60.0% | |
| TAGCCGGTGGACGAGGATTG+GGG | - | chr1_4:49286125-49286144 | Msa0167400:intron | 60.0% | |
| AGTCCCCAATCCTCGTCCAC+CGG | + | chr1_4:49286131-49286150 | None:intergenic | 60.0% | |
| ACACCCTTTGGATCCCACCG+TGG | - | chr1_4:49286680-49286699 | Msa0167400:intron | 60.0% | |
| CACCCTTTGGATCCCACCGT+GGG | - | chr1_4:49286681-49286700 | Msa0167400:intron | 60.0% | |
| GTCCCACGGTGGGATCCAAA+GGG | + | chr1_4:49286686-49286705 | None:intergenic | 60.0% | |
| AGTCCCACGGTGGGATCCAA+AGG | + | chr1_4:49286687-49286706 | None:intergenic | 60.0% | |
| !! | AGGGCTGGCTAGAAAACCCC+TGG | + | chr1_4:49288140-49288159 | None:intergenic | 60.0% |
| GGATCAGGTGGCTGCTGCAA+AGG | - | chr1_4:49288922-49288941 | Msa0167400:intron | 60.0% | |
| GGCTGCATGGTGAATGGAGC+AGG | - | chr1_4:49288980-49288999 | Msa0167400:intron | 60.0% | |
| TCTCGCTCTCTCTCCGTCGC+CGG | - | chr1_4:49285442-49285461 | Msa0167400:three_prime_UTR | 65.0% | |
| !! | GCGTCGTTGGACTGGCCAAC+TGG | - | chr1_4:49286900-49286919 | Msa0167400:intron | 65.0% |
| CTCTCTCCGTCGCCGGCACA+TGG | - | chr1_4:49285449-49285468 | Msa0167400:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 49285260 | 49290561 | 49285260 | ID=Msa0167400;Name=Msa0167400 |
| chr1_4 | mRNA | 49285260 | 49290561 | 49285260 | ID=Msa0167400-mRNA-1;Parent=Msa0167400;Name=Msa0167400-mRNA-1;_AED=0.09;_eAED=0.09;_QI=152|1|1|1|1|1|12|477|421 |
| chr1_4 | exon | 49285260 | 49285811 | 49285260 | ID=Msa0167400-mRNA-1:exon:14517;Parent=Msa0167400-mRNA-1 |
| chr1_4 | exon | 49285926 | 49285997 | 49285926 | ID=Msa0167400-mRNA-1:exon:14516;Parent=Msa0167400-mRNA-1 |
| chr1_4 | exon | 49286394 | 49286516 | 49286394 | ID=Msa0167400-mRNA-1:exon:14515;Parent=Msa0167400-mRNA-1 |
| chr1_4 | exon | 49286728 | 49286892 | 49286728 | ID=Msa0167400-mRNA-1:exon:14514;Parent=Msa0167400-mRNA-1 |
| chr1_4 | exon | 49287775 | 49287909 | 49287775 | ID=Msa0167400-mRNA-1:exon:14513;Parent=Msa0167400-mRNA-1 |
| chr1_4 | exon | 49288000 | 49288152 | 49288000 | ID=Msa0167400-mRNA-1:exon:14512;Parent=Msa0167400-mRNA-1 |
| chr1_4 | exon | 49288227 | 49288301 | 49288227 | ID=Msa0167400-mRNA-1:exon:14511;Parent=Msa0167400-mRNA-1 |
| chr1_4 | exon | 49288472 | 49288549 | 49288472 | ID=Msa0167400-mRNA-1:exon:14510;Parent=Msa0167400-mRNA-1 |
| chr1_4 | exon | 49289308 | 49289372 | 49289308 | ID=Msa0167400-mRNA-1:exon:14509;Parent=Msa0167400-mRNA-1 |
| chr1_4 | exon | 49289607 | 49289718 | 49289607 | ID=Msa0167400-mRNA-1:exon:14508;Parent=Msa0167400-mRNA-1 |
| chr1_4 | exon | 49290066 | 49290176 | 49290066 | ID=Msa0167400-mRNA-1:exon:14507;Parent=Msa0167400-mRNA-1 |
| chr1_4 | exon | 49290308 | 49290561 | 49290308 | ID=Msa0167400-mRNA-1:exon:14506;Parent=Msa0167400-mRNA-1 |
| chr1_4 | five_prime_UTR | 49290410 | 49290561 | 49290410 | ID=Msa0167400-mRNA-1:five_prime_utr;Parent=Msa0167400-mRNA-1 |
| chr1_4 | CDS | 49290308 | 49290409 | 49290308 | ID=Msa0167400-mRNA-1:cds;Parent=Msa0167400-mRNA-1 |
| chr1_4 | CDS | 49290066 | 49290176 | 49290066 | ID=Msa0167400-mRNA-1:cds;Parent=Msa0167400-mRNA-1 |
| chr1_4 | CDS | 49289607 | 49289718 | 49289607 | ID=Msa0167400-mRNA-1:cds;Parent=Msa0167400-mRNA-1 |
| chr1_4 | CDS | 49289308 | 49289372 | 49289308 | ID=Msa0167400-mRNA-1:cds;Parent=Msa0167400-mRNA-1 |
| chr1_4 | CDS | 49288472 | 49288549 | 49288472 | ID=Msa0167400-mRNA-1:cds;Parent=Msa0167400-mRNA-1 |
| chr1_4 | CDS | 49288227 | 49288301 | 49288227 | ID=Msa0167400-mRNA-1:cds;Parent=Msa0167400-mRNA-1 |
| chr1_4 | CDS | 49288000 | 49288152 | 49288000 | ID=Msa0167400-mRNA-1:cds;Parent=Msa0167400-mRNA-1 |
| chr1_4 | CDS | 49287775 | 49287909 | 49287775 | ID=Msa0167400-mRNA-1:cds;Parent=Msa0167400-mRNA-1 |
| chr1_4 | CDS | 49286728 | 49286892 | 49286728 | ID=Msa0167400-mRNA-1:cds;Parent=Msa0167400-mRNA-1 |
| chr1_4 | CDS | 49286394 | 49286516 | 49286394 | ID=Msa0167400-mRNA-1:cds;Parent=Msa0167400-mRNA-1 |
| chr1_4 | CDS | 49285926 | 49285997 | 49285926 | ID=Msa0167400-mRNA-1:cds;Parent=Msa0167400-mRNA-1 |
| chr1_4 | CDS | 49285737 | 49285811 | 49285737 | ID=Msa0167400-mRNA-1:cds;Parent=Msa0167400-mRNA-1 |
| chr1_4 | three_prime_UTR | 49285260 | 49285736 | 49285260 | ID=Msa0167400-mRNA-1:three_prime_utr;Parent=Msa0167400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
