Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051970 | sp|Q9SJ40|VPS11_ARATH | 75.268 | 841 | 182 | 6 | 1 | 839 | 1 | 817 | 0.0 | 1310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051970 | G7I3K9 | 98.331 | 839 | 14 | 0 | 1 | 839 | 1 | 839 | 0.0 | 1711 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035320 | Msa0051970 | 0.816194 | 6.271795e-52 | -8.615850e-47 |
| Msa0051970 | Msa0075210 | 0.805867 | 1.084739e-49 | -8.615850e-47 |
| Msa0051970 | Msa0080250 | 0.816700 | 4.831188e-52 | -8.615850e-47 |
| Msa0051970 | Msa0122870 | 0.805914 | 1.060546e-49 | -8.615850e-47 |
| Msa0051970 | Msa0167400 | 0.813915 | 2.009630e-51 | -8.615850e-47 |
| Msa0051970 | Msa0270200 | 0.836405 | 9.538319e-57 | -8.615850e-47 |
| Msa0051970 | Msa0511150 | 0.814359 | 1.604195e-51 | -8.615850e-47 |
| Msa0051970 | Msa0547680 | 0.801963 | 7.026089e-49 | -8.615850e-47 |
| Msa0051970 | Msa1095790 | 0.807192 | 5.698690e-50 | -8.615850e-47 |
| Msa0051970 | Msa1403560 | 0.857513 | 1.551327e-62 | -8.615850e-47 |
| Msa0051970 | Msa1414940 | 0.802394 | 5.729172e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051970 | MtrunA17_Chr1g0153441 | 98.331 | 839 | 14 | 0 | 1 | 839 | 1 | 839 | 0.0 | 1711 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051970 | AT2G05170.1 | 75.268 | 841 | 182 | 6 | 1 | 839 | 1 | 817 | 0.0 | 1310 |
Find 201 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCACTGGTCTTGGGTTT+AGG | 0.133976 | 1_2:+6138318 | Msa0051970:CDS |
| AATCACTGGTCTTGGGTTTA+GGG | 0.182284 | 1_2:+6138319 | Msa0051970:CDS |
| CAGAGTTTGAAGGACAATTA+TGG | 0.226264 | 1_2:-6140208 | None:intergenic |
| TCTGAGGTTCTGAGAAAATA+TGG | 0.241148 | 1_2:+6138965 | Msa0051970:CDS |
| GACAAATCAACTTTATCTAT+TGG | 0.273921 | 1_2:+6138839 | Msa0051970:CDS |
| CATTGCATGCTCATGGTAAT+TGG | 0.275978 | 1_2:-6139293 | None:intergenic |
| ACAAATCAACTTTATCTATT+GGG | 0.277279 | 1_2:+6138840 | Msa0051970:CDS |
| TCATCACCCTCATTCCCTTA+TGG | 0.279998 | 1_2:+6139597 | Msa0051970:CDS |
| ATCTATTGGGGAAAAGGATA+TGG | 0.280398 | 1_2:+6138853 | Msa0051970:CDS |
| CCATCTTGTTCTTCTTCCTC+TGG | 0.295883 | 1_2:-6136696 | None:intergenic |
| AATGAACAGGAGTTAATAAT+TGG | 0.296506 | 1_2:+6138572 | Msa0051970:intron |
| CTGCAACTAAACGACAATTT+AGG | 0.297889 | 1_2:-6136464 | None:intergenic |
| AGACTGGGTGATTCAGTTAA+AGG | 0.309604 | 1_2:+6140069 | Msa0051970:CDS |
| TGATCAAGGGTTTGCCTCCT+TGG | 0.310759 | 1_2:-6138416 | None:intergenic |
| CAGCAATAGTTCCATTGGTT+TGG | 0.314895 | 1_2:-6139795 | None:intergenic |
| CTAAATTGTCGTTTAGTTGC+AGG | 0.343394 | 1_2:+6136465 | Msa0051970:five_prime_UTR |
| AGGTGAATCCTTGACCTTAT+TGG | 0.343976 | 1_2:-6139638 | None:intergenic |
| AGCAATAGTTCCATTGGTTT+GGG | 0.348338 | 1_2:-6139794 | None:intergenic |
| TATCACCCGTTTCAAGCTTC+AGG | 0.352630 | 1_2:+6138265 | Msa0051970:CDS |
| AAGGAGGGGATCCATCTCTT+TGG | 0.360728 | 1_2:+6140088 | Msa0051970:CDS |
| CTTTCCTCAATCACTGGTCT+TGG | 0.364241 | 1_2:+6138311 | Msa0051970:CDS |
| AGACAATTCAGATTCTCATT+AGG | 0.370003 | 1_2:+6139482 | Msa0051970:CDS |
| AGAGTTTGAAGGACAATTAT+GGG | 0.373061 | 1_2:-6140207 | None:intergenic |
| GATTAATTGCCACAGTATAT+AGG | 0.376809 | 1_2:-6138907 | None:intergenic |
| AACTTTATCTATTGGGGAAA+AGG | 0.376852 | 1_2:+6138847 | Msa0051970:CDS |
| CGCAATATCCCAACACAATC+AGG | 0.377225 | 1_2:-6137959 | None:intergenic |
| CCTCACACTTTCAGTGATCA+AGG | 0.379854 | 1_2:+6140245 | Msa0051970:CDS |
| TTCTCATATGCTCTATGAAT+GGG | 0.379887 | 1_2:+6138793 | Msa0051970:CDS |
| CTCAAATATTTCGGTGAGCT+TGG | 0.382396 | 1_2:+6140120 | Msa0051970:CDS |
| TTTCCTCAATCACTGGTCTT+GGG | 0.382842 | 1_2:+6138312 | Msa0051970:CDS |
| CTACAACCTCACAAATTACT+TGG | 0.388960 | 1_2:+6139102 | Msa0051970:CDS |
| TTACCAGCAACGCAACTTCC+TGG | 0.390746 | 1_2:+6137832 | Msa0051970:intron |
| GGAAGGGGTAAAGTTGTAAC+TGG | 0.392960 | 1_2:+6136771 | Msa0051970:CDS |
| TCAGGCACAAAGCTGATTGC+TGG | 0.394780 | 1_2:-6137886 | None:intergenic |
| AAGATCTTGCTTGAAGATCT+TGG | 0.395246 | 1_2:+6139355 | Msa0051970:CDS |
| TGAAAAGATGAAACTCTATA+AGG | 0.401719 | 1_2:+6139987 | Msa0051970:CDS |
| CCAATACTACTCATAGCTAT+TGG | 0.404601 | 1_2:+6138191 | Msa0051970:CDS |
| AGGAGGGGATCCATCTCTTT+GGG | 0.410282 | 1_2:+6140089 | Msa0051970:CDS |
| TTGATGGACGTGGTCCTTGT+TGG | 0.414039 | 1_2:+6138624 | Msa0051970:CDS |
| GCGGATGTACTCAAATATTT+CGG | 0.416309 | 1_2:+6140111 | Msa0051970:CDS |
| TTTCGAGGGAGAAAAGAAAT+TGG | 0.416355 | 1_2:+6138649 | Msa0051970:CDS |
| GCTCAGTACATAAATACTAT+TGG | 0.417530 | 1_2:+6139028 | Msa0051970:CDS |
| TTAAAAGTGAAGACAGCATC+GGG | 0.419487 | 1_2:+6139224 | Msa0051970:CDS |
| CCAATAGCTATGAGTAGTAT+TGG | 0.424303 | 1_2:-6138191 | None:intergenic |
| GAAAAGTTCCGAAAAGGAAA+AGG | 0.428827 | 1_2:+6139822 | Msa0051970:CDS |
| TCGACGTGGAAACAGCAATC+AGG | 0.429305 | 1_2:+6139257 | Msa0051970:CDS |
| CTGAGGTTCTGAGAAAATAT+GGG | 0.432325 | 1_2:+6138966 | Msa0051970:CDS |
| GCAACTTCCTGGTAACGATT+GGG | 0.436621 | 1_2:+6137843 | Msa0051970:CDS |
| TGGTCCTTGTTGGGCTTTCG+AGG | 0.436966 | 1_2:+6138634 | Msa0051970:CDS |
| TTCCACCTGAAGCTTGAAAC+GGG | 0.437573 | 1_2:-6138270 | None:intergenic |
| CTGATCAGCAATAGTTCCAT+TGG | 0.444085 | 1_2:-6139800 | None:intergenic |
| GGGATGACAATAAAGGAGTA+TGG | 0.445490 | 1_2:+6139430 | Msa0051970:CDS |
| TAAAGTGGATGTTCTGTCTC+TGG | 0.445656 | 1_2:-6139898 | None:intergenic |
| AATTGCATGCTGCAAAAGAC+TGG | 0.448531 | 1_2:+6140053 | Msa0051970:CDS |
| CGCAACTTCCTGGTAACGAT+TGG | 0.450703 | 1_2:+6137842 | Msa0051970:CDS |
| TGGATATATACAACTCTAAG+AGG | 0.457967 | 1_2:-6139684 | None:intergenic |
| CGTCTTCCCCAATCGTTACC+AGG | 0.459623 | 1_2:-6137850 | None:intergenic |
| TGATGGACGTGGTCCTTGTT+GGG | 0.460881 | 1_2:+6138625 | Msa0051970:CDS |
| AAATGAATTCATTCAAAGAC+GGG | 0.463069 | 1_2:+6139950 | Msa0051970:CDS |
| TGAAGGAAAGTTCAATTCGT+TGG | 0.464411 | 1_2:-6139704 | None:intergenic |
| ACCCTTGATCAGATTGGATC+TGG | 0.464992 | 1_2:+6138428 | Msa0051970:CDS |
| GGTCAAGGATTCACCTGCTC+AGG | 0.467389 | 1_2:+6139645 | Msa0051970:CDS |
| TGGTAGTTATGAAGAGGCCT+TGG | 0.468629 | 1_2:+6139375 | Msa0051970:CDS |
| TTCTAGTCTTGAATCAAGTC+AGG | 0.470104 | 1_2:+6139405 | Msa0051970:CDS |
| CGGCGAGTCCTGATTGTGTT+GGG | 0.472454 | 1_2:+6137951 | Msa0051970:CDS |
| TTGTTAATCTCCACCTGAGC+AGG | 0.474815 | 1_2:-6139658 | None:intergenic |
| GTTATTGCAGATCAAAGAAC+AGG | 0.476400 | 1_2:+6138701 | Msa0051970:CDS |
| AGGCAAACCCTTGATCAGAT+TGG | 0.477845 | 1_2:+6138422 | Msa0051970:CDS |
| TCGAGTGTTGTTCGAGTGGA+AGG | 0.478736 | 1_2:+6136754 | Msa0051970:CDS |
| TTGCAGGCAGCTTCTTCCAA+TGG | 0.481144 | 1_2:+6136481 | Msa0051970:five_prime_UTR |
| TCAGGCAGGGATGACAATAA+AGG | 0.481244 | 1_2:+6139423 | Msa0051970:CDS |
| TTTCTCATATGCTCTATGAA+TGG | 0.483651 | 1_2:+6138792 | Msa0051970:CDS |
| CCGTCTTGAAAGGCGTGAAA+AGG | 0.484924 | 1_2:+6139846 | Msa0051970:CDS |
| CAGGCACAAAGCTGATTGCT+GGG | 0.486277 | 1_2:-6137885 | None:intergenic |
| GAAAACAAGCTCACAGAACT+CGG | 0.486413 | 1_2:-6138377 | None:intergenic |
| GAGAAAAGAAATTGGTAGGA+TGG | 0.487649 | 1_2:+6138657 | Msa0051970:CDS |
| CACCAGATCCAATCTGATCA+AGG | 0.488583 | 1_2:-6138430 | None:intergenic |
| TCAAGGGTTTGCCTCCTTGG+TGG | 0.489921 | 1_2:-6138413 | None:intergenic |
| CATTGCTCGGAAGCTTGAGC+AGG | 0.494654 | 1_2:+6140272 | Msa0051970:CDS |
| TTTAATAGCCCACAGTGCTC+TGG | 0.496214 | 1_2:+6138760 | Msa0051970:CDS |
| TCGCGGCGGCGATGTATCAA+TGG | 0.496274 | 1_2:+6136625 | Msa0051970:exon |
| AAAATGCTGAGAAAATCAAC+AGG | 0.501120 | 1_2:-6139571 | None:intergenic |
| TTTCCACCTGAAGCTTGAAA+CGG | 0.502073 | 1_2:-6138271 | None:intergenic |
| TTCAGTATCACAGTCTAATG+AGG | 0.507019 | 1_2:+6139723 | Msa0051970:CDS |
| GCTAAATCAACATCATAAAG+TGG | 0.508250 | 1_2:-6139913 | None:intergenic |
| AGAAAATCCATAAGGGAATG+AGG | 0.512488 | 1_2:-6139604 | None:intergenic |
| GATCTGCAATAACACACAAA+AGG | 0.515758 | 1_2:-6138691 | None:intergenic |
| ACCGTTTGCTTCTTCGATCG+AGG | 0.516521 | 1_2:+6136807 | Msa0051970:CDS |
| CTTGGAAAAGCTACATGAGA+AGG | 0.516604 | 1_2:+6139120 | Msa0051970:CDS |
| TGCAATGTATGTTGCAAAGA+AGG | 0.517375 | 1_2:+6139309 | Msa0051970:CDS |
| AGTAATCGCTTGCTATATGC+TGG | 0.517414 | 1_2:+6140011 | Msa0051970:CDS |
| TCTCTTTATTCAACAACTCA+AGG | 0.517822 | 1_2:+6136872 | Msa0051970:CDS |
| ATGTATGTTGCAAAGAAGGC+TGG | 0.518614 | 1_2:+6139313 | Msa0051970:CDS |
| GACAAAAGAGGACGTTCAAA+TGG | 0.519441 | 1_2:+6139523 | Msa0051970:CDS |
| TCACTGAAAGTGTGAGGCAA+GGG | 0.519511 | 1_2:-6140239 | None:intergenic |
| CAAATCAACTTTATCTATTG+GGG | 0.520833 | 1_2:+6138841 | Msa0051970:CDS |
| TGATCAGAAAAGTTCCGAAA+AGG | 0.523848 | 1_2:+6139816 | Msa0051970:CDS |
| CAACATACATTGCATGCTCA+TGG | 0.524740 | 1_2:-6139300 | None:intergenic |
| TGAAAGAGAAAGAGAAGGAG+AGG | 0.526239 | 1_2:+6136727 | Msa0051970:CDS |
| GGTTCAATTTACTGCATCAA+AGG | 0.528160 | 1_2:+6138224 | Msa0051970:CDS |
| ATCTTTAACCAGAGCACTGT+GGG | 0.529432 | 1_2:-6138768 | None:intergenic |
| AGCATCATTACCATTGCCTC+AGG | 0.531533 | 1_2:-6138001 | None:intergenic |
| AAACCCAAGACCAGTGATTG+AGG | 0.533139 | 1_2:-6138315 | None:intergenic |
| AGTCTTGAATCAAGTCAGGC+AGG | 0.533537 | 1_2:+6139409 | Msa0051970:CDS |
| CGACGTGGAAACAGCAATCA+GGG | 0.533602 | 1_2:+6139258 | Msa0051970:CDS |
| GCAATCAGCTTTGTGCCTGA+AGG | 0.534105 | 1_2:+6137889 | Msa0051970:CDS |
| AAAACACTTTCCTCAATCAC+TGG | 0.534770 | 1_2:+6138305 | Msa0051970:CDS |
| GGTCCTTGTTGGGCTTTCGA+GGG | 0.535468 | 1_2:+6138635 | Msa0051970:CDS |
| AAAAGTTCCGAAAAGGAAAA+GGG | 0.535509 | 1_2:+6139823 | Msa0051970:CDS |
| AAAATAAGTGCCCAAACCAA+TGG | 0.537419 | 1_2:+6139784 | Msa0051970:CDS |
| CAAGGATTCACCTGCTCAGG+TGG | 0.538482 | 1_2:+6139648 | Msa0051970:CDS |
| ATAGCTATTGGCTTAGACAA+TGG | 0.538631 | 1_2:+6138203 | Msa0051970:CDS |
| CATTAGGCTTTGCACAGACG+AGG | 0.539579 | 1_2:+6139498 | Msa0051970:CDS |
| AGTACATCCGCCCAAAGAGA+TGG | 0.540263 | 1_2:-6140099 | None:intergenic |
| AGGAAAAGGGCCGTCTTGAA+AGG | 0.540276 | 1_2:+6139836 | Msa0051970:CDS |
| CTGAGAAAATCAACAGGAGA+TGG | 0.541673 | 1_2:-6139565 | None:intergenic |
| TCAATCACTTCAGTTGTTTG+CGG | 0.543295 | 1_2:+6138349 | Msa0051970:CDS |
| ACGGCGAGTCCTGATTGTGT+TGG | 0.543998 | 1_2:+6137950 | Msa0051970:CDS |
| CGTCTTGAAAGGCGTGAAAA+GGG | 0.546551 | 1_2:+6139847 | Msa0051970:CDS |
| GCGGAAGTTCGAATTCTTCG+AGG | 0.550459 | 1_2:+6136647 | Msa0051970:CDS |
| GCAGGAATCAAAGGTGATTG+AGG | 0.554065 | 1_2:+6140290 | Msa0051970:CDS |
| AAGAGAACAGAAGAAGAATG+AGG | 0.556997 | 1_2:-6136855 | None:intergenic |
| GAGGGAGAAAAGAAATTGGT+AGG | 0.557120 | 1_2:+6138653 | Msa0051970:CDS |
| GGTCTTGGGTTTAGGGTGGA+CGG | 0.558064 | 1_2:+6138326 | Msa0051970:CDS |
| TAATCAGTTTCCTGAGGCAA+TGG | 0.558713 | 1_2:+6137991 | Msa0051970:CDS |
| GAGTGTTGTTCGAGTGGAAG+GGG | 0.560346 | 1_2:+6136756 | Msa0051970:CDS |
| AGAATCTGAATTGTCTCCGA+TGG | 0.561215 | 1_2:-6139475 | None:intergenic |
| TACACATGCTTAAGAGTGGA+TGG | 0.561745 | 1_2:+6139872 | Msa0051970:CDS |
| AAAACAAGCTCACAGAACTC+GGG | 0.563705 | 1_2:-6138376 | None:intergenic |
| GAAAATCCATAAGGGAATGA+GGG | 0.566341 | 1_2:-6139603 | None:intergenic |
| CACTGGTCTTGGGTTTAGGG+TGG | 0.569621 | 1_2:+6138322 | Msa0051970:CDS |
| AGAAGGCTGGGAGACATGAA+TGG | 0.570653 | 1_2:+6139326 | Msa0051970:CDS |
| ATTAAAAGTGAAGACAGCAT+CGG | 0.571136 | 1_2:+6139223 | Msa0051970:CDS |
| GAAGCTTGAGCAGGAATCAA+AGG | 0.573976 | 1_2:+6140281 | Msa0051970:CDS |
| CAACGTGAAAGAGAAAGAGA+AGG | 0.574262 | 1_2:+6136722 | Msa0051970:CDS |
| TGATCAAGGATTACATTGCT+CGG | 0.575906 | 1_2:+6140259 | Msa0051970:CDS |
| AAGACTAGAAATATATTCCA+AGG | 0.575970 | 1_2:-6139392 | None:intergenic |
| ATCACTGAAAGTGTGAGGCA+AGG | 0.582038 | 1_2:-6140240 | None:intergenic |
| CACCCGTTTCAAGCTTCAGG+TGG | 0.587503 | 1_2:+6138268 | Msa0051970:CDS |
| TGTATGTTGCAAAGAAGGCT+GGG | 0.587852 | 1_2:+6139314 | Msa0051970:CDS |
| GTCTTGAATCAAGTCAGGCA+GGG | 0.589046 | 1_2:+6139410 | Msa0051970:CDS |
| TATGCTGGCGCATGATCACA+AGG | 0.589412 | 1_2:+6140026 | Msa0051970:CDS |
| AAAATATACCAATAAGGTCA+AGG | 0.592033 | 1_2:+6139630 | Msa0051970:CDS |
| GAAATGAATTCATTCAAAGA+CGG | 0.593625 | 1_2:+6139949 | Msa0051970:CDS |
| TCCTCGATCGAAGAAGCAAA+CGG | 0.594689 | 1_2:-6136808 | None:intergenic |
| ATAGCTATGAGTAGTATTGG+AGG | 0.595921 | 1_2:-6138188 | None:intergenic |
| CAACTTCCTGGTAACGATTG+GGG | 0.597577 | 1_2:+6137844 | Msa0051970:CDS |
| GCGATTCACAATCGATCGAT+CGG | 0.597885 | 1_2:-6136606 | None:intergenic |
| AGATCTTGGTAGTTATGAAG+AGG | 0.598131 | 1_2:+6139369 | Msa0051970:CDS |
| TTGGAAAAGCTACATGAGAA+GGG | 0.599303 | 1_2:+6139121 | Msa0051970:CDS |
| ATTTACAACGTGATCGATCG+AGG | 0.599460 | 1_2:-6136521 | None:intergenic |
| GCAAGACTATGATGAGGCAA+TGG | 0.600642 | 1_2:+6139006 | Msa0051970:CDS |
| GAGTTTGAAGGACAATTATG+GGG | 0.601929 | 1_2:-6140206 | None:intergenic |
| CGAGTGTTGTTCGAGTGGAA+GGG | 0.604908 | 1_2:+6136755 | Msa0051970:CDS |
| TGGGTGATTCAGTTAAAGGA+GGG | 0.607280 | 1_2:+6140073 | Msa0051970:CDS |
| AAATTGGTAGGATGGTTTCG+TGG | 0.608218 | 1_2:+6138665 | Msa0051970:CDS |
| GCATCAAAGGAGATATTGCA+CGG | 0.611133 | 1_2:+6138237 | Msa0051970:CDS |
| TCTAATAGAGCACAAGCCAT+CGG | 0.612609 | 1_2:+6139459 | Msa0051970:CDS |
| CTGGGTGATTCAGTTAAAGG+AGG | 0.613053 | 1_2:+6140072 | Msa0051970:CDS |
| AAAATCGAGTGTTGTTCGAG+TGG | 0.614642 | 1_2:+6136750 | Msa0051970:CDS |
| GGTCTACACATGCTTAAGAG+TGG | 0.616537 | 1_2:+6139868 | Msa0051970:CDS |
| ACAGACGAGGGTGACAAAAG+AGG | 0.616703 | 1_2:+6139511 | Msa0051970:CDS |
| AGATGCTGCGGCTACTTCTG+AGG | 0.616834 | 1_2:+6138949 | Msa0051970:CDS |
| ACCAGATCCAATCTGATCAA+GGG | 0.620565 | 1_2:-6138429 | None:intergenic |
| GCTCATGGTAATTGGCAGAA+CGG | 0.620726 | 1_2:-6139285 | None:intergenic |
| TCTCCCTCGAAAGCCCAACA+AGG | 0.621485 | 1_2:-6138638 | None:intergenic |
| GACTCAACAAGCAGATGCTG+CGG | 0.622452 | 1_2:+6138937 | Msa0051970:CDS |
| TCATTAGACTGTGATACTGA+AGG | 0.629024 | 1_2:-6139721 | None:intergenic |
| GTTAATAATTGGTCGACCAG+AGG | 0.633039 | 1_2:+6138583 | Msa0051970:CDS |
| TCAGTATCACAGTCTAATGA+GGG | 0.633103 | 1_2:+6139724 | Msa0051970:CDS |
| TGCAAAATGCACAATTCCAG+AGG | 0.634341 | 1_2:+6136680 | Msa0051970:CDS |
| CCAGAGGAAGAAGAACAAGA+TGG | 0.637391 | 1_2:+6136696 | Msa0051970:CDS |
| AGTTTGAAGGACAATTATGG+GGG | 0.640269 | 1_2:-6140205 | None:intergenic |
| CCTTGATCACTGAAAGTGTG+AGG | 0.642300 | 1_2:-6140245 | None:intergenic |
| AGGCACAAAGCTGATTGCTG+GGG | 0.643663 | 1_2:-6137884 | None:intergenic |
| TGAGGTTCTGAGAAAATATG+GGG | 0.647630 | 1_2:+6138967 | Msa0051970:CDS |
| GGATATATACAACTCTAAGA+GGG | 0.651731 | 1_2:-6139683 | None:intergenic |
| TCTCATATGCTCTATGAATG+GGG | 0.652495 | 1_2:+6138794 | Msa0051970:CDS |
| GCAATCTGAAAGTACGAGCA+CGG | 0.655504 | 1_2:+6137931 | Msa0051970:CDS |
| CATTGCATGATCAACCACCA+AGG | 0.657468 | 1_2:+6138399 | Msa0051970:CDS |
| CATCAAAGGAGATATTGCAC+GGG | 0.659347 | 1_2:+6138238 | Msa0051970:CDS |
| GGAATCAAAGGTGATTGAGG+AGG | 0.659787 | 1_2:+6140293 | Msa0051970:CDS |
| AGTGGATGTTCTGTCTCTGG+AGG | 0.660662 | 1_2:-6139895 | None:intergenic |
| ATTAGGCTTTGCACAGACGA+GGG | 0.662527 | 1_2:+6139499 | Msa0051970:CDS |
| ATTCACTAATCAGTTTCCTG+AGG | 0.669474 | 1_2:+6137985 | Msa0051970:CDS |
| ATTGCATGCTGCAAAAGACT+GGG | 0.673354 | 1_2:+6140054 | Msa0051970:CDS |
| CGGCGGCGATGTATCAATGG+CGG | 0.677407 | 1_2:+6136628 | Msa0051970:exon |
| CGGGGAACTTAAGTTCGACG+TGG | 0.678311 | 1_2:+6139243 | Msa0051970:CDS |
| AGGGGATCCATCTCTTTGGG+CGG | 0.679575 | 1_2:+6140092 | Msa0051970:CDS |
| CAGCAAGCAAGACTATGATG+AGG | 0.681320 | 1_2:+6139000 | Msa0051970:CDS |
| GATCGATCGATTGTGAATCG+CGG | 0.691976 | 1_2:+6136608 | Msa0051970:five_prime_UTR |
| GGGTGATTCAGTTAAAGGAG+GGG | 0.693595 | 1_2:+6140074 | Msa0051970:CDS |
| CATCTTTAACCAGAGCACTG+TGG | 0.696661 | 1_2:-6138769 | None:intergenic |
| GTGATGAGTGAAGAAGCCAT+TGG | 0.698495 | 1_2:-6136497 | None:intergenic |
| GTTTGAAGGACAATTATGGG+GGG | 0.705881 | 1_2:-6140204 | None:intergenic |
| GTAACAGTTCAATAGAAGTG+TGG | 0.715654 | 1_2:-6139164 | None:intergenic |
| CGATCGATTGTGAATCGCGG+CGG | 0.717706 | 1_2:+6136611 | Msa0051970:five_prime_UTR |
| TGCATGATCAACCACCAAGG+AGG | 0.719899 | 1_2:+6138402 | Msa0051970:CDS |
| ATGCTGGCGCATGATCACAA+GGG | 0.723802 | 1_2:+6140027 | Msa0051970:CDS |
| AAACAAGCTCACAGAACTCG+GGG | 0.724973 | 1_2:-6138375 | None:intergenic |
| TAAAAGTGAAGACAGCATCG+GGG | 0.751960 | 1_2:+6139225 | Msa0051970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTCAATTATGTATTT+TGG | + | chr1_2:6136915-6136934 | Msa0051970:intron | 10.0% |
| !!! | TTTATTCAATTATGTATTTT+GGG | + | chr1_2:6136916-6136935 | Msa0051970:intron | 10.0% |
| !! | TACATAATTGAATAAATTGA+AGG | - | chr1_2:6136912-6136931 | None:intergenic | 15.0% |
| !! | ATTTGAAAAAATGATGTAAT+CGG | + | chr1_2:6137096-6137115 | Msa0051970:intron | 15.0% |
| !!! | CATTAGTTTATTTTTTGTTT+AGG | + | chr1_2:6137302-6137321 | Msa0051970:intron | 15.0% |
| !! | TTAGATAAATTATATCTGTA+TGG | + | chr1_2:6138054-6138073 | Msa0051970:intron | 15.0% |
| !!! | TTGTAAAGTTTGTTCTTTTT+TGG | + | chr1_2:6136941-6136960 | Msa0051970:intron | 20.0% |
| !!! | AGATTTTTAGGATTGAAATT+AGG | + | chr1_2:6136984-6137003 | Msa0051970:intron | 20.0% |
| !!! | AGTTTTGGAATTATTTGTTT+TGG | + | chr1_2:6137211-6137230 | Msa0051970:intron | 20.0% |
| !!! | GTTTTGGAATTATTTGTTTT+GGG | + | chr1_2:6137212-6137231 | Msa0051970:intron | 20.0% |
| !!! | AATTATTTGTTTTGGGTAAA+TGG | + | chr1_2:6137219-6137238 | Msa0051970:intron | 20.0% |
| !!! | ATTATTTGTTTTGGGTAAAT+GGG | + | chr1_2:6137220-6137239 | Msa0051970:intron | 20.0% |
| !!! | TTTCTTTTTAACCAACATAT+AGG | - | chr1_2:6137729-6137748 | None:intergenic | 20.0% |
| !! | AAATTATATCTGTATGGTAA+TGG | + | chr1_2:6138060-6138079 | Msa0051970:intron | 20.0% |
| !!! | ATGCTTCTTTTTAATGATTT+TGG | + | chr1_2:6138117-6138136 | Msa0051970:intron | 20.0% |
| !!! | TTTTAATGATTTTGGAATTG+TGG | + | chr1_2:6138125-6138144 | Msa0051970:intron | 20.0% |
| !! | ATAAAAATATATTGAGAGCA+AGG | - | chr1_2:6138501-6138520 | None:intergenic | 20.0% |
| !!! | GTATATTTTTATGAAGTTGA+TGG | + | chr1_2:6138608-6138627 | Msa0051970:CDS | 20.0% |
| !! | ACAAATCAACTTTATCTATT+GGG | + | chr1_2:6138840-6138859 | Msa0051970:CDS | 20.0% |
| !!! | TTATGTGATACAAAAGTTTT+TGG | + | chr1_2:6139066-6139085 | Msa0051970:CDS | 20.0% |
| !!! | TTTTTCAACATCTTTCAATT+TGG | - | chr1_2:6139191-6139210 | None:intergenic | 20.0% |
| !!! | TTTTTCAAGAAAATCCATAA+GGG | - | chr1_2:6139614-6139633 | None:intergenic | 20.0% |
| !!! | ATTTTTCAAGAAAATCCATA+AGG | - | chr1_2:6139615-6139634 | None:intergenic | 20.0% |
| !! | TCTTGAAAAATATACCAATA+AGG | + | chr1_2:6139624-6139643 | Msa0051970:CDS | 20.0% |
| !!! | AAGTTTTGAATTACATTGAA+AGG | + | chr1_2:6140169-6140188 | Msa0051970:CDS | 20.0% |
| !!! | AGTTTTGAATTACATTGAAA+GGG | + | chr1_2:6140170-6140189 | Msa0051970:CDS | 20.0% |
| !! | TGCTTGATGAATAGATTTTT+AGG | + | chr1_2:6136972-6136991 | Msa0051970:intron | 25.0% |
| !!! | TTGATTGATTGCTTTAGTTT+TGG | + | chr1_2:6137196-6137215 | Msa0051970:intron | 25.0% |
| !!! | AATGGGTATTTGATTTTGAT+TGG | + | chr1_2:6137237-6137256 | Msa0051970:intron | 25.0% |
| !! | AACAATGAAAAATGGGATTT+TGG | - | chr1_2:6137358-6137377 | None:intergenic | 25.0% |
| ! | CAATGCAAACAATGAAAAAT+GGG | - | chr1_2:6137365-6137384 | None:intergenic | 25.0% |
| ! | ACAATGCAAACAATGAAAAA+TGG | - | chr1_2:6137366-6137385 | None:intergenic | 25.0% |
| ! | ATTGTTTGCATTGTGAAAAT+GGG | + | chr1_2:6137372-6137391 | Msa0051970:intron | 25.0% |
| ! | TTGGAATAACAACTTATTTG+CGG | - | chr1_2:6137662-6137681 | None:intergenic | 25.0% |
| !! | AATAAGTTGTTATTCCAAAC+AGG | + | chr1_2:6137664-6137683 | Msa0051970:intron | 25.0% |
| !! | ATAAGTTGTTATTCCAAACA+GGG | + | chr1_2:6137665-6137684 | Msa0051970:intron | 25.0% |
| ! | GTTGGTTAAAAAGAAAAGAT+TGG | + | chr1_2:6137733-6137752 | Msa0051970:intron | 25.0% |
| ! | TAAAAAGAAAAGATTGGTGA+AGG | + | chr1_2:6137739-6137758 | Msa0051970:intron | 25.0% |
| !! | TTGTAGTTTAAATGTTTTCC+AGG | + | chr1_2:6137766-6137785 | Msa0051970:intron | 25.0% |
| !! | TGTAGTTTAAATGTTTTCCA+GGG | + | chr1_2:6137767-6137786 | Msa0051970:intron | 25.0% |
| !! | TACATCTTTTATTGTCTTAG+AGG | + | chr1_2:6138160-6138179 | Msa0051970:CDS | 25.0% |
| ! | TTCTGTATGTTAAAATGAAC+AGG | + | chr1_2:6138559-6138578 | Msa0051970:intron | 25.0% |
| ! | AATGAACAGGAGTTAATAAT+TGG | + | chr1_2:6138572-6138591 | Msa0051970:intron | 25.0% |
| ! | GACAAATCAACTTTATCTAT+TGG | + | chr1_2:6138839-6138858 | Msa0051970:CDS | 25.0% |
| ! | CAAATCAACTTTATCTATTG+GGG | + | chr1_2:6138841-6138860 | Msa0051970:CDS | 25.0% |
| !! | AACTTTTGTATCACATAAGA+AGG | - | chr1_2:6139064-6139083 | None:intergenic | 25.0% |
| ! | AAGACTAGAAATATATTCCA+AGG | - | chr1_2:6139395-6139414 | None:intergenic | 25.0% |
| ! | AAAATATACCAATAAGGTCA+AGG | + | chr1_2:6139630-6139649 | Msa0051970:CDS | 25.0% |
| ! | GAAATGAATTCATTCAAAGA+CGG | + | chr1_2:6139949-6139968 | Msa0051970:CDS | 25.0% |
| ! | AAATGAATTCATTCAAAGAC+GGG | + | chr1_2:6139950-6139969 | Msa0051970:CDS | 25.0% |
| ! | TGAAAAGATGAAACTCTATA+AGG | + | chr1_2:6139987-6140006 | Msa0051970:CDS | 25.0% |
| !! | CAAAACTTCTTTTACTTCTT+TGG | - | chr1_2:6140157-6140176 | None:intergenic | 25.0% |
| !!! | GATATTTTTCAATAGCTTGT+CGG | - | chr1_2:6140320-6140339 | None:intergenic | 25.0% |
| ! | ACAAGCTATTGAAAAATATC+AGG | + | chr1_2:6140320-6140339 | Msa0051970:CDS | 25.0% |
| ATTCGATCAAAAAAATGCGA+AGG | - | chr1_2:6136573-6136592 | None:intergenic | 30.0% | |
| TCTCTTTATTCAACAACTCA+AGG | + | chr1_2:6136872-6136891 | Msa0051970:CDS | 30.0% | |
| GTCAACATAGAATCATATAG+AGG | + | chr1_2:6137167-6137186 | Msa0051970:intron | 30.0% | |
| CATTGTTTGCATTGTGAAAA+TGG | + | chr1_2:6137371-6137390 | Msa0051970:intron | 30.0% | |
| !!! | ACATTAGTTTTGAGACTGTT+TGG | + | chr1_2:6137460-6137479 | Msa0051970:intron | 30.0% |
| !!! | CATTAGTTTTGAGACTGTTT+GGG | + | chr1_2:6137461-6137480 | Msa0051970:intron | 30.0% |
| TGAAAACAACTTATGAGCAA+TGG | - | chr1_2:6137510-6137529 | None:intergenic | 30.0% | |
| ATATAAGCTATAAGCTGTCT+TGG | - | chr1_2:6137555-6137574 | None:intergenic | 30.0% | |
| ! | TAAGTTGTTATTCCAAACAG+GGG | + | chr1_2:6137666-6137685 | Msa0051970:intron | 30.0% |
| ! | GTAGTTTAAATGTTTTCCAG+GGG | + | chr1_2:6137768-6137787 | Msa0051970:intron | 30.0% |
| TATCTAAGTCAAAAACCTTC+AGG | - | chr1_2:6137907-6137926 | None:intergenic | 30.0% | |
| TCATAAAAATATACTGCCTC+TGG | - | chr1_2:6138602-6138621 | None:intergenic | 30.0% | |
| TTTCTCATATGCTCTATGAA+TGG | + | chr1_2:6138792-6138811 | Msa0051970:CDS | 30.0% | |
| TTCTCATATGCTCTATGAAT+GGG | + | chr1_2:6138793-6138812 | Msa0051970:CDS | 30.0% | |
| AACTTTATCTATTGGGGAAA+AGG | + | chr1_2:6138847-6138866 | Msa0051970:CDS | 30.0% | |
| CAAGAAAAACCTATATACTG+TGG | + | chr1_2:6138898-6138917 | Msa0051970:CDS | 30.0% | |
| GATTAATTGCCACAGTATAT+AGG | - | chr1_2:6138910-6138929 | None:intergenic | 30.0% | |
| GCTCAGTACATAAATACTAT+TGG | + | chr1_2:6139028-6139047 | Msa0051970:CDS | 30.0% | |
| ATTAAAAGTGAAGACAGCAT+CGG | + | chr1_2:6139223-6139242 | Msa0051970:CDS | 30.0% | |
| AGACAATTCAGATTCTCATT+AGG | + | chr1_2:6139482-6139501 | Msa0051970:CDS | 30.0% | |
| AAAATGCTGAGAAAATCAAC+AGG | - | chr1_2:6139574-6139593 | None:intergenic | 30.0% | |
| ! | GGATATATACAACTCTAAGA+GGG | - | chr1_2:6139686-6139705 | None:intergenic | 30.0% |
| TGGATATATACAACTCTAAG+AGG | - | chr1_2:6139687-6139706 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTGATGCTACGTTA+AGG | - | chr1_2:6139759-6139778 | None:intergenic | 30.0% |
| AAAAGTTCCGAAAAGGAAAA+GGG | + | chr1_2:6139823-6139842 | Msa0051970:CDS | 30.0% | |
| GCTAAATCAACATCATAAAG+TGG | - | chr1_2:6139916-6139935 | None:intergenic | 30.0% | |
| AGAGTTTGAAGGACAATTAT+GGG | - | chr1_2:6140210-6140229 | None:intergenic | 30.0% | |
| GCTATTGAAAAATATCAGGT+TGG | + | chr1_2:6140324-6140343 | Msa0051970:CDS | 30.0% | |
| CTGCAACTAAACGACAATTT+AGG | - | chr1_2:6136467-6136486 | None:intergenic | 35.0% | |
| ! | CTAAATTGTCGTTTAGTTGC+AGG | + | chr1_2:6136465-6136484 | Msa0051970:five_prime_UTR | 35.0% |
| !!! | GTTGTAACTGGTTTTGATGA+TGG | + | chr1_2:6136783-6136802 | Msa0051970:CDS | 35.0% |
| AAGAGAACAGAAGAAGAATG+AGG | - | chr1_2:6136858-6136877 | None:intergenic | 35.0% | |
| AATTAGGTAGTTGTAGAGAG+TGG | + | chr1_2:6137000-6137019 | Msa0051970:intron | 35.0% | |
| ATGTTGACACATATCAGTGT+CGG | - | chr1_2:6137155-6137174 | None:intergenic | 35.0% | |
| AAATGGGTGAAAGAATTCCA+TGG | + | chr1_2:6137388-6137407 | Msa0051970:intron | 35.0% | |
| ATTCACTAATCAGTTTCCTG+AGG | + | chr1_2:6137985-6138004 | Msa0051970:CDS | 35.0% | |
| ! | ATAGCTATGAGTAGTATTGG+AGG | - | chr1_2:6138191-6138210 | None:intergenic | 35.0% |
| CCAATAGCTATGAGTAGTAT+TGG | - | chr1_2:6138194-6138213 | None:intergenic | 35.0% | |
| CCAATACTACTCATAGCTAT+TGG | + | chr1_2:6138191-6138210 | Msa0051970:CDS | 35.0% | |
| !! | ATAGCTATTGGCTTAGACAA+TGG | + | chr1_2:6138203-6138222 | Msa0051970:CDS | 35.0% |
| GGTTCAATTTACTGCATCAA+AGG | + | chr1_2:6138224-6138243 | Msa0051970:CDS | 35.0% | |
| !!! | AGGAAAGTGTTTTGTCTGAA+TGG | - | chr1_2:6138298-6138317 | None:intergenic | 35.0% |
| AAAACACTTTCCTCAATCAC+TGG | + | chr1_2:6138305-6138324 | Msa0051970:CDS | 35.0% | |
| TCAATCACTTCAGTTGTTTG+CGG | + | chr1_2:6138349-6138368 | Msa0051970:CDS | 35.0% | |
| AACAAAGGTTGCATACAGAA+CGG | - | chr1_2:6138478-6138497 | None:intergenic | 35.0% | |
| ATATTGAGAGCAAGGAACAA+AGG | - | chr1_2:6138493-6138512 | None:intergenic | 35.0% | |
| GAAACATTTAGCATTCAGCA+AGG | - | chr1_2:6138542-6138561 | None:intergenic | 35.0% | |
| !!! | TTTTATGAAGTTGATGGACG+TGG | + | chr1_2:6138614-6138633 | Msa0051970:CDS | 35.0% |
| TTTCGAGGGAGAAAAGAAAT+TGG | + | chr1_2:6138649-6138668 | Msa0051970:CDS | 35.0% | |
| GAGAAAAGAAATTGGTAGGA+TGG | + | chr1_2:6138657-6138676 | Msa0051970:CDS | 35.0% | |
| GATCTGCAATAACACACAAA+AGG | - | chr1_2:6138694-6138713 | None:intergenic | 35.0% | |
| GTTATTGCAGATCAAAGAAC+AGG | + | chr1_2:6138701-6138720 | Msa0051970:CDS | 35.0% | |
| TCTCATATGCTCTATGAATG+GGG | + | chr1_2:6138794-6138813 | Msa0051970:CDS | 35.0% | |
| ATCTATTGGGGAAAAGGATA+TGG | + | chr1_2:6138853-6138872 | Msa0051970:CDS | 35.0% | |
| !! | TCTGAGGTTCTGAGAAAATA+TGG | + | chr1_2:6138965-6138984 | Msa0051970:CDS | 35.0% |
| !! | CTGAGGTTCTGAGAAAATAT+GGG | + | chr1_2:6138966-6138985 | Msa0051970:CDS | 35.0% |
| !! | TGAGGTTCTGAGAAAATATG+GGG | + | chr1_2:6138967-6138986 | Msa0051970:CDS | 35.0% |
| CTACAACCTCACAAATTACT+TGG | + | chr1_2:6139102-6139121 | Msa0051970:CDS | 35.0% | |
| !! | GCTTTTCCAAGTAATTTGTG+AGG | - | chr1_2:6139111-6139130 | None:intergenic | 35.0% |
| TTGGAAAAGCTACATGAGAA+GGG | + | chr1_2:6139121-6139140 | Msa0051970:CDS | 35.0% | |
| GTAACAGTTCAATAGAAGTG+TGG | - | chr1_2:6139167-6139186 | None:intergenic | 35.0% | |
| TTAAAAGTGAAGACAGCATC+GGG | + | chr1_2:6139224-6139243 | Msa0051970:CDS | 35.0% | |
| TGCAATGTATGTTGCAAAGA+AGG | + | chr1_2:6139309-6139328 | Msa0051970:CDS | 35.0% | |
| AAGATCTTGCTTGAAGATCT+TGG | + | chr1_2:6139355-6139374 | Msa0051970:CDS | 35.0% | |
| ! | AGATCTTGGTAGTTATGAAG+AGG | + | chr1_2:6139369-6139388 | Msa0051970:CDS | 35.0% |
| !! | TTCTAGTCTTGAATCAAGTC+AGG | + | chr1_2:6139405-6139424 | Msa0051970:CDS | 35.0% |
| GAAAATCCATAAGGGAATGA+GGG | - | chr1_2:6139606-6139625 | None:intergenic | 35.0% | |
| AGAAAATCCATAAGGGAATG+AGG | - | chr1_2:6139607-6139626 | None:intergenic | 35.0% | |
| TGAAGGAAAGTTCAATTCGT+TGG | - | chr1_2:6139707-6139726 | None:intergenic | 35.0% | |
| TCATTAGACTGTGATACTGA+AGG | - | chr1_2:6139724-6139743 | None:intergenic | 35.0% | |
| TTCAGTATCACAGTCTAATG+AGG | + | chr1_2:6139723-6139742 | Msa0051970:CDS | 35.0% | |
| TCAGTATCACAGTCTAATGA+GGG | + | chr1_2:6139724-6139743 | Msa0051970:CDS | 35.0% | |
| AAAATAAGTGCCCAAACCAA+TGG | + | chr1_2:6139784-6139803 | Msa0051970:CDS | 35.0% | |
| !! | AGCAATAGTTCCATTGGTTT+GGG | - | chr1_2:6139797-6139816 | None:intergenic | 35.0% |
| TGATCAGAAAAGTTCCGAAA+AGG | + | chr1_2:6139816-6139835 | Msa0051970:CDS | 35.0% | |
| GAAAAGTTCCGAAAAGGAAA+AGG | + | chr1_2:6139822-6139841 | Msa0051970:CDS | 35.0% | |
| GCGGATGTACTCAAATATTT+CGG | + | chr1_2:6140111-6140130 | Msa0051970:CDS | 35.0% | |
| AGTTTGAAGGACAATTATGG+GGG | - | chr1_2:6140208-6140227 | None:intergenic | 35.0% | |
| GAGTTTGAAGGACAATTATG+GGG | - | chr1_2:6140209-6140228 | None:intergenic | 35.0% | |
| CAGAGTTTGAAGGACAATTA+TGG | - | chr1_2:6140211-6140230 | None:intergenic | 35.0% | |
| !!! | GGTTTTTTGACAGAGTTTGA+AGG | - | chr1_2:6140221-6140240 | None:intergenic | 35.0% |
| TGATCAAGGATTACATTGCT+CGG | + | chr1_2:6140259-6140278 | Msa0051970:CDS | 35.0% | |
| ATTTACAACGTGATCGATCG+AGG | - | chr1_2:6136524-6136543 | None:intergenic | 40.0% | |
| TGCAAAATGCACAATTCCAG+AGG | + | chr1_2:6136680-6136699 | Msa0051970:CDS | 40.0% | |
| CAACGTGAAAGAGAAAGAGA+AGG | + | chr1_2:6136722-6136741 | Msa0051970:CDS | 40.0% | |
| TGAAAGAGAAAGAGAAGGAG+AGG | + | chr1_2:6136727-6136746 | Msa0051970:CDS | 40.0% | |
| ! | AAAATCGAGTGTTGTTCGAG+TGG | + | chr1_2:6136750-6136769 | Msa0051970:CDS | 40.0% |
| ACAATGACACACATCAACAC+TGG | + | chr1_2:6137068-6137087 | Msa0051970:intron | 40.0% | |
| CAAATGCATCAGTGTTGTGT+CGG | + | chr1_2:6137126-6137145 | Msa0051970:intron | 40.0% | |
| AATTCCATGGTTTAGTACCG+TGG | + | chr1_2:6137401-6137420 | Msa0051970:intron | 40.0% | |
| ATTCCATGGTTTAGTACCGT+GGG | + | chr1_2:6137402-6137421 | Msa0051970:intron | 40.0% | |
| TAATCAGTTTCCTGAGGCAA+TGG | + | chr1_2:6137991-6138010 | Msa0051970:CDS | 40.0% | |
| GCATCAAAGGAGATATTGCA+CGG | + | chr1_2:6138237-6138256 | Msa0051970:CDS | 40.0% | |
| CATCAAAGGAGATATTGCAC+GGG | + | chr1_2:6138238-6138257 | Msa0051970:CDS | 40.0% | |
| TTTCCACCTGAAGCTTGAAA+CGG | - | chr1_2:6138274-6138293 | None:intergenic | 40.0% | |
| !! | TTTCCTCAATCACTGGTCTT+GGG | + | chr1_2:6138312-6138331 | Msa0051970:CDS | 40.0% |
| !! | AATCACTGGTCTTGGGTTTA+GGG | + | chr1_2:6138319-6138338 | Msa0051970:CDS | 40.0% |
| AAAACAAGCTCACAGAACTC+GGG | - | chr1_2:6138379-6138398 | None:intergenic | 40.0% | |
| GAAAACAAGCTCACAGAACT+CGG | - | chr1_2:6138380-6138399 | None:intergenic | 40.0% | |
| ACCAGATCCAATCTGATCAA+GGG | - | chr1_2:6138432-6138451 | None:intergenic | 40.0% | |
| GTTAATAATTGGTCGACCAG+AGG | + | chr1_2:6138583-6138602 | Msa0051970:CDS | 40.0% | |
| GAGGGAGAAAAGAAATTGGT+AGG | + | chr1_2:6138653-6138672 | Msa0051970:CDS | 40.0% | |
| AAATTGGTAGGATGGTTTCG+TGG | + | chr1_2:6138665-6138684 | Msa0051970:CDS | 40.0% | |
| !! | ATCTTTAACCAGAGCACTGT+GGG | - | chr1_2:6138771-6138790 | None:intergenic | 40.0% |
| CTTGGAAAAGCTACATGAGA+AGG | + | chr1_2:6139120-6139139 | Msa0051970:CDS | 40.0% | |
| TAAAAGTGAAGACAGCATCG+GGG | + | chr1_2:6139225-6139244 | Msa0051970:CDS | 40.0% | |
| CATTGCATGCTCATGGTAAT+TGG | - | chr1_2:6139296-6139315 | None:intergenic | 40.0% | |
| CAACATACATTGCATGCTCA+TGG | - | chr1_2:6139303-6139322 | None:intergenic | 40.0% | |
| ATGTATGTTGCAAAGAAGGC+TGG | + | chr1_2:6139313-6139332 | Msa0051970:CDS | 40.0% | |
| TGTATGTTGCAAAGAAGGCT+GGG | + | chr1_2:6139314-6139333 | Msa0051970:CDS | 40.0% | |
| GGGATGACAATAAAGGAGTA+TGG | + | chr1_2:6139430-6139449 | Msa0051970:CDS | 40.0% | |
| TCTAATAGAGCACAAGCCAT+CGG | + | chr1_2:6139459-6139478 | Msa0051970:CDS | 40.0% | |
| AGAATCTGAATTGTCTCCGA+TGG | - | chr1_2:6139478-6139497 | None:intergenic | 40.0% | |
| GACAAAAGAGGACGTTCAAA+TGG | + | chr1_2:6139523-6139542 | Msa0051970:CDS | 40.0% | |
| CTGAGAAAATCAACAGGAGA+TGG | - | chr1_2:6139568-6139587 | None:intergenic | 40.0% | |
| AGGTGAATCCTTGACCTTAT+TGG | - | chr1_2:6139641-6139660 | None:intergenic | 40.0% | |
| ! | CAGCAATAGTTCCATTGGTT+TGG | - | chr1_2:6139798-6139817 | None:intergenic | 40.0% |
| CTGATCAGCAATAGTTCCAT+TGG | - | chr1_2:6139803-6139822 | None:intergenic | 40.0% | |
| TACACATGCTTAAGAGTGGA+TGG | + | chr1_2:6139872-6139891 | Msa0051970:CDS | 40.0% | |
| TAAAGTGGATGTTCTGTCTC+TGG | - | chr1_2:6139901-6139920 | None:intergenic | 40.0% | |
| !! | AGTAATCGCTTGCTATATGC+TGG | + | chr1_2:6140011-6140030 | Msa0051970:CDS | 40.0% |
| AATTGCATGCTGCAAAAGAC+TGG | + | chr1_2:6140053-6140072 | Msa0051970:CDS | 40.0% | |
| ATTGCATGCTGCAAAAGACT+GGG | + | chr1_2:6140054-6140073 | Msa0051970:CDS | 40.0% | |
| AGACTGGGTGATTCAGTTAA+AGG | + | chr1_2:6140069-6140088 | Msa0051970:CDS | 40.0% | |
| TGGGTGATTCAGTTAAAGGA+GGG | + | chr1_2:6140073-6140092 | Msa0051970:CDS | 40.0% | |
| CTCAAATATTTCGGTGAGCT+TGG | + | chr1_2:6140120-6140139 | Msa0051970:CDS | 40.0% | |
| GTTTGAAGGACAATTATGGG+GGG | - | chr1_2:6140207-6140226 | None:intergenic | 40.0% | |
| GTGATGAGTGAAGAAGCCAT+TGG | - | chr1_2:6136500-6136519 | None:intergenic | 45.0% | |
| GCGATTCACAATCGATCGAT+CGG | - | chr1_2:6136609-6136628 | None:intergenic | 45.0% | |
| GATCGATCGATTGTGAATCG+CGG | + | chr1_2:6136608-6136627 | Msa0051970:five_prime_UTR | 45.0% | |
| CCATCTTGTTCTTCTTCCTC+TGG | - | chr1_2:6136699-6136718 | None:intergenic | 45.0% | |
| CCAGAGGAAGAAGAACAAGA+TGG | + | chr1_2:6136696-6136715 | Msa0051970:CDS | 45.0% | |
| GGAAGGGGTAAAGTTGTAAC+TGG | + | chr1_2:6136771-6136790 | Msa0051970:CDS | 45.0% | |
| TCCTCGATCGAAGAAGCAAA+CGG | - | chr1_2:6136811-6136830 | None:intergenic | 45.0% | |
| TTTAGTACCGTGGGTCTGTT+TGG | + | chr1_2:6137411-6137430 | Msa0051970:intron | 45.0% | |
| AGTCAATCCAAACAGACCCA+CGG | - | chr1_2:6137421-6137440 | None:intergenic | 45.0% | |
| ACATACATATGGCCCCTGTT+TGG | - | chr1_2:6137681-6137700 | None:intergenic | 45.0% | |
| CACACACGCACACATACATA+TGG | - | chr1_2:6137692-6137711 | None:intergenic | 45.0% | |
| TGAGTTCAAATCAAGACCCC+TGG | - | chr1_2:6137787-6137806 | None:intergenic | 45.0% | |
| ! | GCAACTTCCTGGTAACGATT+GGG | + | chr1_2:6137843-6137862 | Msa0051970:CDS | 45.0% |
| ! | CAACTTCCTGGTAACGATTG+GGG | + | chr1_2:6137844-6137863 | Msa0051970:CDS | 45.0% |
| ! | GCAATCTGAAAGTACGAGCA+CGG | + | chr1_2:6137931-6137950 | Msa0051970:CDS | 45.0% |
| CGCAATATCCCAACACAATC+AGG | - | chr1_2:6137962-6137981 | None:intergenic | 45.0% | |
| AGCATCATTACCATTGCCTC+AGG | - | chr1_2:6138004-6138023 | None:intergenic | 45.0% | |
| TATCACCCGTTTCAAGCTTC+AGG | + | chr1_2:6138265-6138284 | Msa0051970:CDS | 45.0% | |
| TTCCACCTGAAGCTTGAAAC+GGG | - | chr1_2:6138273-6138292 | None:intergenic | 45.0% | |
| ! | CTTTCCTCAATCACTGGTCT+TGG | + | chr1_2:6138311-6138330 | Msa0051970:CDS | 45.0% |
| AAACCCAAGACCAGTGATTG+AGG | - | chr1_2:6138318-6138337 | None:intergenic | 45.0% | |
| !! | CAATCACTGGTCTTGGGTTT+AGG | + | chr1_2:6138318-6138337 | Msa0051970:CDS | 45.0% |
| AAACAAGCTCACAGAACTCG+GGG | - | chr1_2:6138378-6138397 | None:intergenic | 45.0% | |
| CATTGCATGATCAACCACCA+AGG | + | chr1_2:6138399-6138418 | Msa0051970:CDS | 45.0% | |
| AGGCAAACCCTTGATCAGAT+TGG | + | chr1_2:6138422-6138441 | Msa0051970:CDS | 45.0% | |
| ACCCTTGATCAGATTGGATC+TGG | + | chr1_2:6138428-6138447 | Msa0051970:CDS | 45.0% | |
| CACCAGATCCAATCTGATCA+AGG | - | chr1_2:6138433-6138452 | None:intergenic | 45.0% | |
| TTTAATAGCCCACAGTGCTC+TGG | + | chr1_2:6138760-6138779 | Msa0051970:CDS | 45.0% | |
| !! | CATCTTTAACCAGAGCACTG+TGG | - | chr1_2:6138772-6138791 | None:intergenic | 45.0% |
| CAGCAAGCAAGACTATGATG+AGG | + | chr1_2:6139000-6139019 | Msa0051970:CDS | 45.0% | |
| GCAAGACTATGATGAGGCAA+TGG | + | chr1_2:6139006-6139025 | Msa0051970:CDS | 45.0% | |
| GCTCATGGTAATTGGCAGAA+CGG | - | chr1_2:6139288-6139307 | None:intergenic | 45.0% | |
| TGGTAGTTATGAAGAGGCCT+TGG | + | chr1_2:6139375-6139394 | Msa0051970:CDS | 45.0% | |
| AGTCTTGAATCAAGTCAGGC+AGG | + | chr1_2:6139409-6139428 | Msa0051970:CDS | 45.0% | |
| GTCTTGAATCAAGTCAGGCA+GGG | + | chr1_2:6139410-6139429 | Msa0051970:CDS | 45.0% | |
| TCAGGCAGGGATGACAATAA+AGG | + | chr1_2:6139423-6139442 | Msa0051970:CDS | 45.0% | |
| ATTAGGCTTTGCACAGACGA+GGG | + | chr1_2:6139499-6139518 | Msa0051970:CDS | 45.0% | |
| TCATCACCCTCATTCCCTTA+TGG | + | chr1_2:6139597-6139616 | Msa0051970:CDS | 45.0% | |
| TTGTTAATCTCCACCTGAGC+AGG | - | chr1_2:6139661-6139680 | None:intergenic | 45.0% | |
| ! | AAGACGGCCCTTTTCCTTTT+CGG | - | chr1_2:6139833-6139852 | None:intergenic | 45.0% |
| ! | CCTTTTCACGCCTTTCAAGA+CGG | - | chr1_2:6139849-6139868 | None:intergenic | 45.0% |
| ! | CGTCTTGAAAGGCGTGAAAA+GGG | + | chr1_2:6139847-6139866 | Msa0051970:CDS | 45.0% |
| GGTCTACACATGCTTAAGAG+TGG | + | chr1_2:6139868-6139887 | Msa0051970:CDS | 45.0% | |
| CTGGGTGATTCAGTTAAAGG+AGG | + | chr1_2:6140072-6140091 | Msa0051970:CDS | 45.0% | |
| GGGTGATTCAGTTAAAGGAG+GGG | + | chr1_2:6140074-6140093 | Msa0051970:CDS | 45.0% | |
| ! | TCACTGAAAGTGTGAGGCAA+GGG | - | chr1_2:6140242-6140261 | None:intergenic | 45.0% |
| ! | ATCACTGAAAGTGTGAGGCA+AGG | - | chr1_2:6140243-6140262 | None:intergenic | 45.0% |
| ! | CCTTGATCACTGAAAGTGTG+AGG | - | chr1_2:6140248-6140267 | None:intergenic | 45.0% |
| CCTCACACTTTCAGTGATCA+AGG | + | chr1_2:6140245-6140264 | Msa0051970:CDS | 45.0% | |
| GAAGCTTGAGCAGGAATCAA+AGG | + | chr1_2:6140281-6140300 | Msa0051970:CDS | 45.0% | |
| GCAGGAATCAAAGGTGATTG+AGG | + | chr1_2:6140290-6140309 | Msa0051970:CDS | 45.0% | |
| GGAATCAAAGGTGATTGAGG+AGG | + | chr1_2:6140293-6140312 | Msa0051970:CDS | 45.0% | |
| TTGCAGGCAGCTTCTTCCAA+TGG | + | chr1_2:6136481-6136500 | Msa0051970:five_prime_UTR | 50.0% | |
| GCGGAAGTTCGAATTCTTCG+AGG | + | chr1_2:6136647-6136666 | Msa0051970:CDS | 50.0% | |
| ! | TCGAGTGTTGTTCGAGTGGA+AGG | + | chr1_2:6136754-6136773 | Msa0051970:CDS | 50.0% |
| ! | CGAGTGTTGTTCGAGTGGAA+GGG | + | chr1_2:6136755-6136774 | Msa0051970:CDS | 50.0% |
| ! | GAGTGTTGTTCGAGTGGAAG+GGG | + | chr1_2:6136756-6136775 | Msa0051970:CDS | 50.0% |
| ACCGTTTGCTTCTTCGATCG+AGG | + | chr1_2:6136807-6136826 | Msa0051970:CDS | 50.0% | |
| AGACCCACGGTACTAAACCA+TGG | - | chr1_2:6137408-6137427 | None:intergenic | 50.0% | |
| GCACATGGGTGCCTATATGT+TGG | + | chr1_2:6137715-6137734 | Msa0051970:intron | 50.0% | |
| TTACCAGCAACGCAACTTCC+TGG | + | chr1_2:6137832-6137851 | Msa0051970:intron | 50.0% | |
| TTACCAGGAAGTTGCGTTGC+TGG | - | chr1_2:6137838-6137857 | None:intergenic | 50.0% | |
| ! | CGCAACTTCCTGGTAACGAT+TGG | + | chr1_2:6137842-6137861 | Msa0051970:CDS | 50.0% |
| AGGCACAAAGCTGATTGCTG+GGG | - | chr1_2:6137887-6137906 | None:intergenic | 50.0% | |
| CAGGCACAAAGCTGATTGCT+GGG | - | chr1_2:6137888-6137907 | None:intergenic | 50.0% | |
| TCAGGCACAAAGCTGATTGC+TGG | - | chr1_2:6137889-6137908 | None:intergenic | 50.0% | |
| ! | GCAATCAGCTTTGTGCCTGA+AGG | + | chr1_2:6137889-6137908 | Msa0051970:CDS | 50.0% |
| TGCATGATCAACCACCAAGG+AGG | + | chr1_2:6138402-6138421 | Msa0051970:CDS | 50.0% | |
| TGATCAAGGGTTTGCCTCCT+TGG | - | chr1_2:6138419-6138438 | None:intergenic | 50.0% | |
| ! | TTGATGGACGTGGTCCTTGT+TGG | + | chr1_2:6138624-6138643 | Msa0051970:CDS | 50.0% |
| ! | TGATGGACGTGGTCCTTGTT+GGG | + | chr1_2:6138625-6138644 | Msa0051970:CDS | 50.0% |
| GACTCAACAAGCAGATGCTG+CGG | + | chr1_2:6138937-6138956 | Msa0051970:CDS | 50.0% | |
| TCGACGTGGAAACAGCAATC+AGG | + | chr1_2:6139257-6139276 | Msa0051970:CDS | 50.0% | |
| CGACGTGGAAACAGCAATCA+GGG | + | chr1_2:6139258-6139277 | Msa0051970:CDS | 50.0% | |
| AGAAGGCTGGGAGACATGAA+TGG | + | chr1_2:6139326-6139345 | Msa0051970:CDS | 50.0% | |
| CATTAGGCTTTGCACAGACG+AGG | + | chr1_2:6139498-6139517 | Msa0051970:CDS | 50.0% | |
| ACAGACGAGGGTGACAAAAG+AGG | + | chr1_2:6139511-6139530 | Msa0051970:CDS | 50.0% | |
| AGGAAAAGGGCCGTCTTGAA+AGG | + | chr1_2:6139836-6139855 | Msa0051970:CDS | 50.0% | |
| ! | CCGTCTTGAAAGGCGTGAAA+AGG | + | chr1_2:6139846-6139865 | Msa0051970:CDS | 50.0% |
| AGTGGATGTTCTGTCTCTGG+AGG | - | chr1_2:6139898-6139917 | None:intergenic | 50.0% | |
| TATGCTGGCGCATGATCACA+AGG | + | chr1_2:6140026-6140045 | Msa0051970:CDS | 50.0% | |
| ATGCTGGCGCATGATCACAA+GGG | + | chr1_2:6140027-6140046 | Msa0051970:CDS | 50.0% | |
| AAGGAGGGGATCCATCTCTT+TGG | + | chr1_2:6140088-6140107 | Msa0051970:CDS | 50.0% | |
| AGGAGGGGATCCATCTCTTT+GGG | + | chr1_2:6140089-6140108 | Msa0051970:CDS | 50.0% | |
| AGTACATCCGCCCAAAGAGA+TGG | - | chr1_2:6140102-6140121 | None:intergenic | 50.0% | |
| CGATCGATTGTGAATCGCGG+CGG | + | chr1_2:6136611-6136630 | Msa0051970:five_prime_UTR | 55.0% | |
| CGTCTTCCCCAATCGTTACC+AGG | - | chr1_2:6137853-6137872 | None:intergenic | 55.0% | |
| ACGGCGAGTCCTGATTGTGT+TGG | + | chr1_2:6137950-6137969 | Msa0051970:CDS | 55.0% | |
| CGGCGAGTCCTGATTGTGTT+GGG | + | chr1_2:6137951-6137970 | Msa0051970:CDS | 55.0% | |
| CACCCGTTTCAAGCTTCAGG+TGG | + | chr1_2:6138268-6138287 | Msa0051970:CDS | 55.0% | |
| !! | CACTGGTCTTGGGTTTAGGG+TGG | + | chr1_2:6138322-6138341 | Msa0051970:CDS | 55.0% |
| ! | GGTCTTGGGTTTAGGGTGGA+CGG | + | chr1_2:6138326-6138345 | Msa0051970:CDS | 55.0% |
| TCAAGGGTTTGCCTCCTTGG+TGG | - | chr1_2:6138416-6138435 | None:intergenic | 55.0% | |
| TGGTCCTTGTTGGGCTTTCG+AGG | + | chr1_2:6138634-6138653 | Msa0051970:CDS | 55.0% | |
| GGTCCTTGTTGGGCTTTCGA+GGG | + | chr1_2:6138635-6138654 | Msa0051970:CDS | 55.0% | |
| TCTCCCTCGAAAGCCCAACA+AGG | - | chr1_2:6138641-6138660 | None:intergenic | 55.0% | |
| AGATGCTGCGGCTACTTCTG+AGG | + | chr1_2:6138949-6138968 | Msa0051970:CDS | 55.0% | |
| CGGGGAACTTAAGTTCGACG+TGG | + | chr1_2:6139243-6139262 | Msa0051970:CDS | 55.0% | |
| GGTCAAGGATTCACCTGCTC+AGG | + | chr1_2:6139645-6139664 | Msa0051970:CDS | 55.0% | |
| CAAGGATTCACCTGCTCAGG+TGG | + | chr1_2:6139648-6139667 | Msa0051970:CDS | 55.0% | |
| AGGGGATCCATCTCTTTGGG+CGG | + | chr1_2:6140092-6140111 | Msa0051970:CDS | 55.0% | |
| CATTGCTCGGAAGCTTGAGC+AGG | + | chr1_2:6140272-6140291 | Msa0051970:CDS | 55.0% | |
| TCGCGGCGGCGATGTATCAA+TGG | + | chr1_2:6136625-6136644 | Msa0051970:exon | 60.0% | |
| CGGCGGCGATGTATCAATGG+CGG | + | chr1_2:6136628-6136647 | Msa0051970:exon | 60.0% | |
| TGTGCGTGTGTGCGAGCACA+TGG | + | chr1_2:6137700-6137719 | Msa0051970:intron | 60.0% | |
| GTGCGTGTGTGCGAGCACAT+GGG | + | chr1_2:6137701-6137720 | Msa0051970:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 6136439 | 6140374 | 6136439 | ID=Msa0051970;Name=Msa0051970 |
| chr1_2 | mRNA | 6136439 | 6140374 | 6136439 | ID=Msa0051970-mRNA-1;Parent=Msa0051970;Name=Msa0051970-mRNA-1;_AED=0.03;_eAED=0.03;_QI=197|1|0.75|1|1|1|4|0|849 |
| chr1_2 | exon | 6136439 | 6136893 | 6136439 | ID=Msa0051970-mRNA-1:exon:1962;Parent=Msa0051970-mRNA-1 |
| chr1_2 | exon | 6137839 | 6138012 | 6137839 | ID=Msa0051970-mRNA-1:exon:1963;Parent=Msa0051970-mRNA-1 |
| chr1_2 | exon | 6138158 | 6138481 | 6138158 | ID=Msa0051970-mRNA-1:exon:1964;Parent=Msa0051970-mRNA-1 |
| chr1_2 | exon | 6138581 | 6140374 | 6138581 | ID=Msa0051970-mRNA-1:exon:1965;Parent=Msa0051970-mRNA-1 |
| chr1_2 | five_prime_UTR | 6136439 | 6136635 | 6136439 | ID=Msa0051970-mRNA-1:five_prime_utr;Parent=Msa0051970-mRNA-1 |
| chr1_2 | CDS | 6136636 | 6136893 | 6136636 | ID=Msa0051970-mRNA-1:cds;Parent=Msa0051970-mRNA-1 |
| chr1_2 | CDS | 6137839 | 6138012 | 6137839 | ID=Msa0051970-mRNA-1:cds;Parent=Msa0051970-mRNA-1 |
| chr1_2 | CDS | 6138158 | 6138481 | 6138158 | ID=Msa0051970-mRNA-1:cds;Parent=Msa0051970-mRNA-1 |
| chr1_2 | CDS | 6138581 | 6140374 | 6138581 | ID=Msa0051970-mRNA-1:cds;Parent=Msa0051970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
