Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527880 | XP_013454547.1 | 83.636 | 385 | 23 | 3 | 1 | 369 | 1 | 361 | 0.0 | 595 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527880 | A0A072UHH6 | 83.636 | 385 | 23 | 3 | 1 | 369 | 1 | 361 | 0.0 | 595 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078460 | Msa0527880 | 0.810871 | 9.289880e-51 | -8.615850e-47 |
| Msa0174820 | Msa0527880 | 0.805333 | 1.404063e-49 | -8.615850e-47 |
| Msa0527880 | Msa0586160 | 0.825608 | 4.272273e-54 | -8.615850e-47 |
| Msa0527880 | Msa0626180 | 0.812704 | 3.708770e-51 | -8.615850e-47 |
| Msa0527880 | Msa0663320 | 0.902068 | 1.413339e-78 | -8.615850e-47 |
| Msa0527880 | Msa0664030 | 0.892844 | 1.090809e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527880 | MtrunA17_Chr4g0001981 | 83.636 | 385 | 23 | 3 | 1 | 369 | 1 | 361 | 0.0 | 595 |
| Msa0527880 | MtrunA17_Chr4g0073561 | 62.085 | 211 | 62 | 2 | 60 | 252 | 51 | 261 | 4.94e-85 | 266 |
| Msa0527880 | MtrunA17_Chr1g0192751 | 42.077 | 183 | 96 | 2 | 65 | 238 | 42 | 223 | 1.08e-39 | 145 |
| Msa0527880 | MtrunA17_Chr6g0453721 | 34.826 | 201 | 106 | 6 | 60 | 247 | 1 | 189 | 6.72e-28 | 108 |
| Msa0527880 | MtrunA17_Chr4g0073591 | 66.176 | 68 | 23 | 0 | 112 | 179 | 15 | 82 | 3.29e-25 | 99.0 |
| Msa0527880 | MtrunA17_Chr6g0453841 | 31.019 | 216 | 109 | 7 | 60 | 247 | 1 | 204 | 1.61e-20 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527880 | AT4G30780.1 | 52.716 | 313 | 102 | 8 | 17 | 289 | 26 | 332 | 1.44e-91 | 286 |
| Msa0527880 | AT2G24100.1 | 50.799 | 313 | 105 | 7 | 1 | 289 | 1 | 288 | 7.35e-91 | 281 |
| Msa0527880 | AT3G05770.2 | 36.744 | 215 | 111 | 5 | 60 | 250 | 20 | 233 | 8.11e-29 | 116 |
| Msa0527880 | AT3G05770.1 | 36.744 | 215 | 111 | 5 | 60 | 250 | 20 | 233 | 8.43e-29 | 116 |
| Msa0527880 | AT1G54300.1 | 44.286 | 140 | 68 | 4 | 120 | 250 | 22 | 160 | 6.58e-25 | 103 |
Find 92 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAGTTGAAATCGAATT+TGG | 0.132685 | 4_1:-558294 | None:intergenic |
| CCATGCAATCAAAGGGTTTC+AGG | 0.179667 | 4_1:+561410 | Msa0527880:CDS |
| ACCCTTCTGATCTTTCTTCT+TGG | 0.228703 | 4_1:-558700 | None:intergenic |
| ACTGCAGATGATAATAAATA+TGG | 0.286215 | 4_1:-561378 | None:intergenic |
| TGTTTGGAACAGTGTGATTC+AGG | 0.311820 | 4_1:+558555 | Msa0527880:intron |
| CAATGCCCTCAAGGTCTGTT+AGG | 0.323271 | 4_1:+560244 | Msa0527880:CDS |
| TTCTTCACAATCATCAACTA+TGG | 0.345038 | 4_1:+558172 | Msa0527880:exon |
| GGACTGCATGATGTGGAATC+AGG | 0.352036 | 4_1:+560436 | Msa0527880:CDS |
| AGCTAGGTGAGGTAATTTCT+TGG | 0.354560 | 4_1:-560527 | None:intergenic |
| AGAAGAAGTGAAGGGAAAGC+TGG | 0.361169 | 4_1:+560406 | Msa0527880:CDS |
| CATTGAATTGAGTGATGGTT+TGG | 0.363177 | 4_1:+560381 | Msa0527880:CDS |
| ACAATAACTTCCAATGTTCC+TGG | 0.363801 | 4_1:-559313 | None:intergenic |
| TCCGATTTCATACAATCCTT+TGG | 0.368995 | 4_1:+558590 | Msa0527880:CDS |
| TTGCGAAGCATAAGCTTGTA+TGG | 0.377568 | 4_1:+559203 | Msa0527880:CDS |
| GTCTAGATATGAAGGAGATT+TGG | 0.382647 | 4_1:+559165 | Msa0527880:CDS |
| TGCCACAAGGTATGCTTCCT+TGG | 0.393612 | 4_1:-559895 | None:intergenic |
| TCCAAAGGATTGTATGAAAT+CGG | 0.396620 | 4_1:-558591 | None:intergenic |
| CAGAAGTGAACAAAATCTTA+TGG | 0.401302 | 4_1:+560483 | Msa0527880:CDS |
| CCTGAAACCCTTTGATTGCA+TGG | 0.404128 | 4_1:-561410 | None:intergenic |
| CTGAAACCCTTTGATTGCAT+GGG | 0.404792 | 4_1:-561409 | None:intergenic |
| CAATCAACAACAGACTTTAC+TGG | 0.408931 | 4_1:+559916 | Msa0527880:CDS |
| GGAGAATCCAACACAAATTC+CGG | 0.411628 | 4_1:-560325 | None:intergenic |
| GCAGTTCCAGTCTCAAAGTA+TGG | 0.416139 | 4_1:-560346 | None:intergenic |
| TCAGAGTTGAAATCGAATTT+GGG | 0.419622 | 4_1:-558293 | None:intergenic |
| TGTGATTCAGGTGATGATTC+TGG | 0.430308 | 4_1:+558567 | Msa0527880:CDS |
| CTTGTATGGGAAGTTCTTGA+TGG | 0.433138 | 4_1:+559217 | Msa0527880:CDS |
| AATGTTCCTGGAGCATCCTC+AGG | 0.433779 | 4_1:-559301 | None:intergenic |
| CCAACACAAATTCCGGTTGT+TGG | 0.433853 | 4_1:-560318 | None:intergenic |
| AAGGTATGCTTCCTTGGTTG+TGG | 0.434236 | 4_1:-559889 | None:intergenic |
| GCTGAGAAACTTATCAGATT+CGG | 0.453727 | 4_1:-561442 | None:intergenic |
| CAACTTTCTGAGCCAACAAC+CGG | 0.458040 | 4_1:+560306 | Msa0527880:CDS |
| GATTCTCCATACTTTGAGAC+TGG | 0.468589 | 4_1:+560340 | Msa0527880:CDS |
| TTATTTATACCTATGTATGC+TGG | 0.472570 | 4_1:-559947 | None:intergenic |
| GAAGAAGTGAAGGGAAAGCT+GGG | 0.473769 | 4_1:+560407 | Msa0527880:CDS |
| CACTTTGTGCAATGCCCTCA+AGG | 0.479139 | 4_1:+560235 | Msa0527880:CDS |
| GGTCTTCCCTTCGATGTCGA+TGG | 0.482765 | 4_1:+561489 | Msa0527880:CDS |
| GAAGAAGAGTCCTTCACTGT+TGG | 0.484620 | 4_1:+558641 | Msa0527880:CDS |
| AATTCCATGGTCTGATATCA+TGG | 0.485625 | 4_1:+559261 | Msa0527880:CDS |
| TTTCAACTCTGATTCTCCTA+AGG | 0.489774 | 4_1:+558304 | Msa0527880:CDS |
| CCAACAACCGGAATTTGTGT+TGG | 0.491090 | 4_1:+560318 | Msa0527880:CDS |
| TTGAGTCAGATTAAGTTGCC+TGG | 0.498526 | 4_1:+561468 | Msa0527880:CDS |
| AGACGCAAACCAAGTGGACT+TGG | 0.503986 | 4_1:-558618 | None:intergenic |
| TGAAACCCTTTGATTGCATG+GGG | 0.507204 | 4_1:-561408 | None:intergenic |
| CAGTATAAGTCTAGATATGA+AGG | 0.517526 | 4_1:+559157 | Msa0527880:intron |
| CACTCAATTCAATGTGGTCA+TGG | 0.523533 | 4_1:-560372 | None:intergenic |
| GAAATTACCTCACCTAGCTC+AGG | 0.524612 | 4_1:+560531 | Msa0527880:CDS |
| TGAGGATGCTCCAGGAACAT+TGG | 0.526671 | 4_1:+559303 | Msa0527880:CDS |
| GTCTGATATCATGGCTCTCA+AGG | 0.526777 | 4_1:+559270 | Msa0527880:CDS |
| CATGATGTGGAATCAGGGTC+TGG | 0.530089 | 4_1:+560442 | Msa0527880:CDS |
| AGAATAAGATTGAAATTCCA+TGG | 0.535046 | 4_1:+559248 | Msa0527880:CDS |
| TTGGATGAACCAAGTCCACT+TGG | 0.535980 | 4_1:+558609 | Msa0527880:CDS |
| TGCTGCTGATAGCAAGCTCA+AGG | 0.539666 | 4_1:+558746 | Msa0527880:CDS |
| TTGGCTCAGAAAGTTGAGAC+GGG | 0.539829 | 4_1:-560299 | None:intergenic |
| AACTACCCTGAGGATGCTCC+AGG | 0.542158 | 4_1:+559295 | Msa0527880:CDS |
| GCCTCCCTAACAGACCTTGA+GGG | 0.542641 | 4_1:-560249 | None:intergenic |
| AATGCCCTCAAGGTCTGTTA+GGG | 0.546969 | 4_1:+560245 | Msa0527880:CDS |
| TGTATTTGTTGTAGCTGGCA+AGG | 0.547557 | 4_1:+559839 | Msa0527880:intron |
| TGCGAAGCATAAGCTTGTAT+GGG | 0.558386 | 4_1:+559204 | Msa0527880:CDS |
| GCTGGACATCGTAGAAAAGC+AGG | 0.559213 | 4_1:+558064 | None:intergenic |
| TTCCAAGAAGAAAGATCAGA+AGG | 0.560722 | 4_1:+558698 | Msa0527880:CDS |
| GCCCTCAAGGTCTGTTAGGG+AGG | 0.562789 | 4_1:+560248 | Msa0527880:CDS |
| GGTTTGGATAGAAGAAGTGA+AGG | 0.566531 | 4_1:+560397 | Msa0527880:CDS |
| AAATCATCCATCGACATCGA+AGG | 0.578360 | 4_1:-561496 | None:intergenic |
| TAGATATGAAGGAGATTTGG+TGG | 0.584423 | 4_1:+559168 | Msa0527880:CDS |
| TGCCTCCCTAACAGACCTTG+AGG | 0.584503 | 4_1:-560250 | None:intergenic |
| GTGGACAAGCCAGCATACAT+AGG | 0.584639 | 4_1:+559938 | Msa0527880:CDS |
| AGTGGACTTGGTTCATCCAA+AGG | 0.586408 | 4_1:-558606 | None:intergenic |
| CCATAGGAATTACCTGAGCT+AGG | 0.591916 | 4_1:-560543 | None:intergenic |
| TTCTTCAGACGCAAACCAAG+TGG | 0.595315 | 4_1:-558624 | None:intergenic |
| TCGACATCGAAGGGAAGACC+AGG | 0.595415 | 4_1:-561486 | None:intergenic |
| GACTGCATGATGTGGAATCA+GGG | 0.597635 | 4_1:+560437 | Msa0527880:CDS |
| TGAATCAAATCCAACAGTGA+AGG | 0.602378 | 4_1:-558651 | None:intergenic |
| GTTGGCTCAGAAAGTTGAGA+CGG | 0.604139 | 4_1:-560300 | None:intergenic |
| AATCATCCATCGACATCGAA+GGG | 0.611126 | 4_1:-561495 | None:intergenic |
| GACCACATTGAATTGAGTGA+TGG | 0.611625 | 4_1:+560376 | Msa0527880:CDS |
| CGGGTGATAATAAAATCACA+AGG | 0.613387 | 4_1:-561341 | None:intergenic |
| TCAAAGGGTTTCAGGAGCAG+AGG | 0.614600 | 4_1:+561418 | Msa0527880:CDS |
| GTCTGTTGTTGATTGCCACA+AGG | 0.622596 | 4_1:-559908 | None:intergenic |
| CTTGAGGGCATTGCACAAAG+TGG | 0.635048 | 4_1:-560234 | None:intergenic |
| TCAACAACAGACTTTACTGG+TGG | 0.640598 | 4_1:+559919 | Msa0527880:CDS |
| ATGTTCCTGGAGCATCCTCA+GGG | 0.646838 | 4_1:-559300 | None:intergenic |
| GTTTGGATAGAAGAAGTGAA+GGG | 0.651890 | 4_1:+560398 | Msa0527880:CDS |
| TCCAAGAAGAAAGATCAGAA+GGG | 0.651999 | 4_1:+558699 | Msa0527880:CDS |
| ATTTGTTGTAGCTGGCAAGG+AGG | 0.658694 | 4_1:+559842 | Msa0527880:intron |
| GGGAGATCAATCCACAACCA+AGG | 0.673080 | 4_1:+559878 | Msa0527880:CDS |
| GGAATTACCTGAGCTAGGTG+AGG | 0.680636 | 4_1:-560538 | None:intergenic |
| TGGCTCAGAAAGTTGAGACG+GGG | 0.681167 | 4_1:-560298 | None:intergenic |
| AGAGCCATGATATCAGACCA+TGG | 0.692062 | 4_1:-559265 | None:intergenic |
| GAAACCCTTTGATTGCATGG+GGG | 0.700329 | 4_1:-561407 | None:intergenic |
| AACCATCACTCAATTCAATG+TGG | 0.718712 | 4_1:-560378 | None:intergenic |
| TCTCAAGGCAAACTACCCTG+AGG | 0.745164 | 4_1:+559285 | Msa0527880:CDS |
| AACCAAGGAAGCATACCTTG+TGG | 0.758682 | 4_1:+559893 | Msa0527880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGTTAATTTCATAT+TGG | + | chr4_1:558451-558470 | Msa0527880:intron | 10.0% |
| !!! | TTTTTTGTTAATTTCATATT+GGG | + | chr4_1:558452-558471 | Msa0527880:intron | 10.0% |
| !!! | TTTTATACATTGTTTTAATT+TGG | + | chr4_1:560573-560592 | Msa0527880:intron | 10.0% |
| !!! | TTTTAATTTCAAATTTAACA+TGG | + | chr4_1:560687-560706 | Msa0527880:intron | 10.0% |
| !! | TAATCATTATCATTATATAA+TGG | + | chr4_1:561246-561265 | Msa0527880:intron | 10.0% |
| !! | ATAAGTTATTTATCAAAACA+GGG | - | chr4_1:558882-558901 | None:intergenic | 15.0% |
| !! | AATAAGTTATTTATCAAAAC+AGG | - | chr4_1:558883-558902 | None:intergenic | 15.0% |
| !!! | TTTTATTGCTTAATAGATTT+TGG | + | chr4_1:559546-559565 | Msa0527880:intron | 15.0% |
| !!! | TTTTATTGCTTAATAGATTT+TGG | + | chr4_1:559546-559565 | Msa0527880:intron | 15.0% |
| !! | TGTATAAAAAAAATATCCAT+AGG | - | chr4_1:560562-560581 | None:intergenic | 15.0% |
| !! | AGAGGAATAATATTATAAAA+TGG | - | chr4_1:561190-561209 | None:intergenic | 15.0% |
| !!! | ATATGGAATTATATCATTTT+CGG | - | chr4_1:561364-561383 | None:intergenic | 15.0% |
| !!! | GTTTAATTTTCAGTTTGTTA+TGG | + | chr4_1:558477-558496 | Msa0527880:intron | 20.0% |
| !!! | ATTGTGTTTTTTTGTTTGTT+TGG | + | chr4_1:558539-558558 | Msa0527880:intron | 20.0% |
| !! | TTTGTTTGTAGAAATAATGA+AGG | + | chr4_1:558856-558875 | Msa0527880:intron | 20.0% |
| !!! | TTTTAATCATTTATGTGTCA+TGG | + | chr4_1:559391-559410 | Msa0527880:intron | 20.0% |
| !!! | TTTTATTGCTTACTAGATTT+TGG | + | chr4_1:559438-559457 | Msa0527880:intron | 20.0% |
| !!! | TTTTATTGCTCAATAGATTT+TGG | + | chr4_1:559492-559511 | Msa0527880:intron | 20.0% |
| !!! | TTAGTTGTTTTCAATTCATT+TGG | + | chr4_1:560149-560168 | Msa0527880:intron | 20.0% |
| !!! | ATTCTGTATTTTGTTGTTAT+AGG | + | chr4_1:560209-560228 | Msa0527880:intron | 20.0% |
| !! | TATCTCAAGAAATACAAAAA+AGG | - | chr4_1:560626-560645 | None:intergenic | 20.0% |
| !!! | ATCTTTTAAATTTTCCTGAA+TGG | + | chr4_1:560723-560742 | Msa0527880:intron | 20.0% |
| !! | AATTTAATCATTTGATACTC+TGG | - | chr4_1:560774-560793 | None:intergenic | 20.0% |
| !!! | AGAGTATCAAATGATTAAAT+TGG | + | chr4_1:560773-560792 | Msa0527880:intron | 20.0% |
| !! | TAATTTATTGTGGATATCTA+CGG | + | chr4_1:561071-561090 | Msa0527880:intron | 20.0% |
| !!! | TGTTGATTATGTTTTTGTTA+TGG | + | chr4_1:561117-561136 | Msa0527880:intron | 20.0% |
| !!! | TATGGAATTATATCATTTTC+GGG | - | chr4_1:561363-561382 | None:intergenic | 20.0% |
| ! | TCACTTCAAAAAAGTCAAAT+TGG | + | chr4_1:558226-558245 | Msa0527880:CDS | 25.0% |
| !!! | ATGAAATTAATGATGGGTTT+TGG | - | chr4_1:558362-558381 | None:intergenic | 25.0% |
| ! | TTTGTTAATTTCATATTGGG+TGG | + | chr4_1:558455-558474 | Msa0527880:intron | 25.0% |
| !! | GTTGTCTTCATAAGTTATTT+TGG | + | chr4_1:559001-559020 | Msa0527880:intron | 25.0% |
| !!! | GATGATGTGATTGTTATTTA+TGG | + | chr4_1:559129-559148 | Msa0527880:intron | 25.0% |
| ! | AGAATAAGATTGAAATTCCA+TGG | + | chr4_1:559248-559267 | Msa0527880:CDS | 25.0% |
| ! | GTGTTAGATATATGCTATAA+TGG | + | chr4_1:559654-559673 | Msa0527880:intron | 25.0% |
| ! | AAATAGCATATCGCAAAATA+TGG | - | chr4_1:559711-559730 | None:intergenic | 25.0% |
| ! | TTATTTATACCTATGTATGC+TGG | - | chr4_1:559950-559969 | None:intergenic | 25.0% |
| !!! | ATTGTTTTAATTTGGTCTGA+TGG | + | chr4_1:560581-560600 | Msa0527880:intron | 25.0% |
| ! | ATACAAAAAAGGCTATAAAC+AGG | - | chr4_1:560615-560634 | None:intergenic | 25.0% |
| !! | TTTAAATTTTCCTGAATGGT+CGG | + | chr4_1:560727-560746 | Msa0527880:intron | 25.0% |
| ! | AATGCATTAAGATCTATTGA+GGG | - | chr4_1:561015-561034 | None:intergenic | 25.0% |
| ! | AATTTATTGTGGATATCTAC+GGG | + | chr4_1:561072-561091 | Msa0527880:intron | 25.0% |
| ! | ATAATGATTAAAGACAGTAG+CGG | - | chr4_1:561236-561255 | None:intergenic | 25.0% |
| ! | ACTGCAGATGATAATAAATA+TGG | - | chr4_1:561381-561400 | None:intergenic | 25.0% |
| TTCTTCACAATCATCAACTA+TGG | + | chr4_1:558172-558191 | Msa0527880:exon | 30.0% | |
| TCAGAGTTGAAATCGAATTT+GGG | - | chr4_1:558296-558315 | None:intergenic | 30.0% | |
| ATCAGAGTTGAAATCGAATT+TGG | - | chr4_1:558297-558316 | None:intergenic | 30.0% | |
| TGAAAGAAAAAGAGAACCTT+AGG | - | chr4_1:558323-558342 | None:intergenic | 30.0% | |
| ACCCATCATTAATTTCATTC+TGG | + | chr4_1:558364-558383 | Msa0527880:intron | 30.0% | |
| CCCAGAATGAAATTAATGAT+GGG | - | chr4_1:558368-558387 | None:intergenic | 30.0% | |
| CCCATCATTAATTTCATTCT+GGG | + | chr4_1:558365-558384 | Msa0527880:intron | 30.0% | |
| ACCCAGAATGAAATTAATGA+TGG | - | chr4_1:558369-558388 | None:intergenic | 30.0% | |
| TCCAAAGGATTGTATGAAAT+CGG | - | chr4_1:558594-558613 | None:intergenic | 30.0% | |
| !!! | TGTTTTGAAGATTGGTACTT+GGG | + | chr4_1:558787-558806 | Msa0527880:intron | 30.0% |
| CAGTATAAGTCTAGATATGA+AGG | + | chr4_1:559157-559176 | Msa0527880:intron | 30.0% | |
| ATTGACAACATATGCTAAGT+TGG | + | chr4_1:559814-559833 | Msa0527880:intron | 30.0% | |
| !! | CAATTCATTTGGTAATGAAG+TGG | + | chr4_1:560160-560179 | Msa0527880:intron | 30.0% |
| AATCACATCATTAAGACATC+AGG | - | chr4_1:560192-560211 | None:intergenic | 30.0% | |
| ! | CATAAGATTTTGTTCACTTC+TGG | - | chr4_1:560485-560504 | None:intergenic | 30.0% |
| CAGAAGTGAACAAAATCTTA+TGG | + | chr4_1:560483-560502 | Msa0527880:CDS | 30.0% | |
| GATTAAATTGGCAGTATGTT+TGG | + | chr4_1:560785-560804 | Msa0527880:intron | 30.0% | |
| TAGATTGTACCTTGACTAAA+TGG | - | chr4_1:560899-560918 | None:intergenic | 30.0% | |
| TTTCTGATTAATCTGCAATC+CGG | + | chr4_1:560966-560985 | Msa0527880:intron | 30.0% | |
| ATGCATTAAGATCTATTGAG+GGG | - | chr4_1:561014-561033 | None:intergenic | 30.0% | |
| GAATGCATTAAGATCTATTG+AGG | - | chr4_1:561016-561035 | None:intergenic | 30.0% | |
| AATATTATTCCTCTGTTCTG+AGG | + | chr4_1:561196-561215 | Msa0527880:intron | 30.0% | |
| TAATGATTAAAGACAGTAGC+GGG | - | chr4_1:561235-561254 | None:intergenic | 30.0% | |
| ! | CATCACATGTGTCTAAAATA+TGG | + | chr4_1:561290-561309 | Msa0527880:intron | 30.0% |
| AAGCAGGAGAAAAACACATT+TGG | + | chr4_1:558080-558099 | Msa0527880:five_prime_UTR | 35.0% | |
| TTTCAACTCTGATTCTCCTA+AGG | + | chr4_1:558304-558323 | Msa0527880:CDS | 35.0% | |
| TCCGATTTCATACAATCCTT+TGG | + | chr4_1:558590-558609 | Msa0527880:CDS | 35.0% | |
| TGAATCAAATCCAACAGTGA+AGG | - | chr4_1:558654-558673 | None:intergenic | 35.0% | |
| TTCCAAGAAGAAAGATCAGA+AGG | + | chr4_1:558698-558717 | Msa0527880:CDS | 35.0% | |
| TCCAAGAAGAAAGATCAGAA+GGG | + | chr4_1:558699-558718 | Msa0527880:CDS | 35.0% | |
| !!! | CTGTTTTGAAGATTGGTACT+TGG | + | chr4_1:558786-558805 | Msa0527880:intron | 35.0% |
| CACCATCTCAAAACTTATGA+TGG | + | chr4_1:559095-559114 | Msa0527880:intron | 35.0% | |
| !!! | CACCATCATAAGTTTTGAGA+TGG | - | chr4_1:559100-559119 | None:intergenic | 35.0% |
| GTCTAGATATGAAGGAGATT+TGG | + | chr4_1:559165-559184 | Msa0527880:CDS | 35.0% | |
| TAGATATGAAGGAGATTTGG+TGG | + | chr4_1:559168-559187 | Msa0527880:CDS | 35.0% | |
| AATTCCATGGTCTGATATCA+TGG | + | chr4_1:559261-559280 | Msa0527880:CDS | 35.0% | |
| ACAATAACTTCCAATGTTCC+TGG | - | chr4_1:559316-559335 | None:intergenic | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | + | chr4_1:559456-559475 | Msa0527880:intron | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | + | chr4_1:559456-559475 | Msa0527880:intron | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | + | chr4_1:559456-559475 | Msa0527880:intron | 35.0% | |
| TTGTCAAATAGCTTCTGTAG+CGG | + | chr4_1:559741-559760 | Msa0527880:intron | 35.0% | |
| ATTGATCTCCCTGAAAAACA+GGG | - | chr4_1:559869-559888 | None:intergenic | 35.0% | |
| CAATCAACAACAGACTTTAC+TGG | + | chr4_1:559916-559935 | Msa0527880:CDS | 35.0% | |
| GAATGGCGGTAAAATCAAAA+CGG | + | chr4_1:560010-560029 | Msa0527880:intron | 35.0% | |
| AAAACAAATCTGTGCACTCT+TGG | - | chr4_1:560126-560145 | None:intergenic | 35.0% | |
| AACCATCACTCAATTCAATG+TGG | - | chr4_1:560381-560400 | None:intergenic | 35.0% | |
| CATTGAATTGAGTGATGGTT+TGG | + | chr4_1:560381-560400 | Msa0527880:CDS | 35.0% | |
| GTTTGGATAGAAGAAGTGAA+GGG | + | chr4_1:560398-560417 | Msa0527880:CDS | 35.0% | |
| ! | AAGATTTTGTTCACTTCTGG+AGG | - | chr4_1:560482-560501 | None:intergenic | 35.0% |
| TTGACTAAATGGTCGAGATT+TGG | - | chr4_1:560888-560907 | None:intergenic | 35.0% | |
| AAATCTCGACCATTTAGTCA+AGG | + | chr4_1:560887-560906 | Msa0527880:intron | 35.0% | |
| AAGGTACAATCTACATCCAA+TGG | + | chr4_1:560906-560925 | Msa0527880:intron | 35.0% | |
| TTCTGATTAATCTGCAATCC+GGG | + | chr4_1:560967-560986 | Msa0527880:intron | 35.0% | |
| AATCAAAAACCTCAGAACAG+AGG | - | chr4_1:561208-561227 | None:intergenic | 35.0% | |
| CGGGTGATAATAAAATCACA+AGG | - | chr4_1:561344-561363 | None:intergenic | 35.0% | |
| GCTGAGAAACTTATCAGATT+CGG | - | chr4_1:561445-561464 | None:intergenic | 35.0% | |
| ! | TGTTTGGAACAGTGTGATTC+AGG | + | chr4_1:558555-558574 | Msa0527880:intron | 40.0% |
| TGTGATTCAGGTGATGATTC+TGG | + | chr4_1:558567-558586 | Msa0527880:CDS | 40.0% | |
| ACCCTTCTGATCTTTCTTCT+TGG | - | chr4_1:558703-558722 | None:intergenic | 40.0% | |
| CCAATCTTCAAAACAGTAGC+AGG | - | chr4_1:558782-558801 | None:intergenic | 40.0% | |
| !!! | CCTGCTACTGTTTTGAAGAT+TGG | + | chr4_1:558779-558798 | Msa0527880:intron | 40.0% |
| TTTGAAGATTGGTACTTGGG+AGG | + | chr4_1:558790-558809 | Msa0527880:intron | 40.0% | |
| TTGCGAAGCATAAGCTTGTA+TGG | + | chr4_1:559203-559222 | Msa0527880:CDS | 40.0% | |
| TGCGAAGCATAAGCTTGTAT+GGG | + | chr4_1:559204-559223 | Msa0527880:CDS | 40.0% | |
| CTTGTATGGGAAGTTCTTGA+TGG | + | chr4_1:559217-559236 | Msa0527880:CDS | 40.0% | |
| TTTGGACCAGTTATGTGTCA+TGG | + | chr4_1:559618-559637 | Msa0527880:intron | 40.0% | |
| ATGAGTCCATGACACATAAC+TGG | - | chr4_1:559465-559484 | None:intergenic | 40.0% | |
| !! | TGGTGTGTATTTGTTGTAGC+TGG | + | chr4_1:559834-559853 | Msa0527880:intron | 40.0% |
| !! | TGTATTTGTTGTAGCTGGCA+AGG | + | chr4_1:559839-559858 | Msa0527880:intron | 40.0% |
| TTGATCTCCCTGAAAAACAG+GGG | - | chr4_1:559868-559887 | None:intergenic | 40.0% | |
| GATTGATCTCCCTGAAAAAC+AGG | - | chr4_1:559870-559889 | None:intergenic | 40.0% | |
| TCAACAACAGACTTTACTGG+TGG | + | chr4_1:559919-559938 | Msa0527880:CDS | 40.0% | |
| CAATCATGCACTTGAGATGA+CGG | - | chr4_1:559990-560009 | None:intergenic | 40.0% | |
| TCTCAAGTGCATGATTGGAA+TGG | + | chr4_1:559993-560012 | Msa0527880:intron | 40.0% | |
| AAATCTGTGCACTCTTGGAT+TGG | - | chr4_1:560121-560140 | None:intergenic | 40.0% | |
| GGAGAATCCAACACAAATTC+CGG | - | chr4_1:560328-560347 | None:intergenic | 40.0% | |
| !! | GATTCTCCATACTTTGAGAC+TGG | + | chr4_1:560340-560359 | Msa0527880:CDS | 40.0% |
| CACTCAATTCAATGTGGTCA+TGG | - | chr4_1:560375-560394 | None:intergenic | 40.0% | |
| GACCACATTGAATTGAGTGA+TGG | + | chr4_1:560376-560395 | Msa0527880:CDS | 40.0% | |
| GGTTTGGATAGAAGAAGTGA+AGG | + | chr4_1:560397-560416 | Msa0527880:CDS | 40.0% | |
| !! | GATTTTTGGACTGCATGATG+TGG | + | chr4_1:560429-560448 | Msa0527880:CDS | 40.0% |
| AGCTAGGTGAGGTAATTTCT+TGG | - | chr4_1:560530-560549 | None:intergenic | 40.0% | |
| TGGCAGTATGTTTGGTTGTT+TGG | + | chr4_1:560793-560812 | Msa0527880:intron | 40.0% | |
| TTTAGATCAACCCTCAATGC+CGG | + | chr4_1:560834-560853 | Msa0527880:intron | 40.0% | |
| TGCATGCAAATCTCAACCAT+TGG | - | chr4_1:560925-560944 | None:intergenic | 40.0% | |
| ATTTGCATGCACAGGTTCAA+CGG | + | chr4_1:560934-560953 | Msa0527880:intron | 40.0% | |
| ATAATCAACACTAGTGCAGC+TGG | - | chr4_1:561107-561126 | None:intergenic | 40.0% | |
| ATTAACCCCCATGCAATCAA+AGG | + | chr4_1:561402-561421 | Msa0527880:CDS | 40.0% | |
| TTAACCCCCATGCAATCAAA+GGG | + | chr4_1:561403-561422 | Msa0527880:CDS | 40.0% | |
| TGAAACCCTTTGATTGCATG+GGG | - | chr4_1:561411-561430 | None:intergenic | 40.0% | |
| CTGAAACCCTTTGATTGCAT+GGG | - | chr4_1:561412-561431 | None:intergenic | 40.0% | |
| ! | TTGAGTCAGATTAAGTTGCC+TGG | + | chr4_1:561468-561487 | Msa0527880:CDS | 40.0% |
| ! | AGTGGACTTGGTTCATCCAA+AGG | - | chr4_1:558609-558628 | None:intergenic | 45.0% |
| TTGGATGAACCAAGTCCACT+TGG | + | chr4_1:558609-558628 | Msa0527880:CDS | 45.0% | |
| TTCTTCAGACGCAAACCAAG+TGG | - | chr4_1:558627-558646 | None:intergenic | 45.0% | |
| GAAGAAGAGTCCTTCACTGT+TGG | + | chr4_1:558641-558660 | Msa0527880:CDS | 45.0% | |
| AGAGCCATGATATCAGACCA+TGG | - | chr4_1:559268-559287 | None:intergenic | 45.0% | |
| GTCTGATATCATGGCTCTCA+AGG | + | chr4_1:559270-559289 | Msa0527880:CDS | 45.0% | |
| !! | ATTTGTTGTAGCTGGCAAGG+AGG | + | chr4_1:559842-559861 | Msa0527880:intron | 45.0% |
| AAGGTATGCTTCCTTGGTTG+TGG | - | chr4_1:559892-559911 | None:intergenic | 45.0% | |
| ! | AACCAAGGAAGCATACCTTG+TGG | + | chr4_1:559893-559912 | Msa0527880:CDS | 45.0% |
| ! | GTCTGTTGTTGATTGCCACA+AGG | - | chr4_1:559911-559930 | None:intergenic | 45.0% |
| CGTCATCTCAAGTGCATGAT+TGG | + | chr4_1:559988-560007 | Msa0527880:intron | 45.0% | |
| CAAGTGCATGATTGGAATGG+CGG | + | chr4_1:559996-560015 | Msa0527880:intron | 45.0% | |
| AATGCCCTCAAGGTCTGTTA+GGG | + | chr4_1:560245-560264 | Msa0527880:CDS | 45.0% | |
| TTGGCTCAGAAAGTTGAGAC+GGG | - | chr4_1:560302-560321 | None:intergenic | 45.0% | |
| ! | GTTGGCTCAGAAAGTTGAGA+CGG | - | chr4_1:560303-560322 | None:intergenic | 45.0% |
| CAACTTTCTGAGCCAACAAC+CGG | + | chr4_1:560306-560325 | Msa0527880:CDS | 45.0% | |
| CCAACACAAATTCCGGTTGT+TGG | - | chr4_1:560321-560340 | None:intergenic | 45.0% | |
| CCAACAACCGGAATTTGTGT+TGG | + | chr4_1:560318-560337 | Msa0527880:CDS | 45.0% | |
| GCAGTTCCAGTCTCAAAGTA+TGG | - | chr4_1:560349-560368 | None:intergenic | 45.0% | |
| AGAAGAAGTGAAGGGAAAGC+TGG | + | chr4_1:560406-560425 | Msa0527880:CDS | 45.0% | |
| GAAGAAGTGAAGGGAAAGCT+GGG | + | chr4_1:560407-560426 | Msa0527880:CDS | 45.0% | |
| ! | GAAGGGAAAGCTGGGATTTT+TGG | + | chr4_1:560415-560434 | Msa0527880:CDS | 45.0% |
| GACTGCATGATGTGGAATCA+GGG | + | chr4_1:560437-560456 | Msa0527880:CDS | 45.0% | |
| GAAATTACCTCACCTAGCTC+AGG | + | chr4_1:560531-560550 | Msa0527880:CDS | 45.0% | |
| CCATAGGAATTACCTGAGCT+AGG | - | chr4_1:560546-560565 | None:intergenic | 45.0% | |
| CCTAGCTCAGGTAATTCCTA+TGG | + | chr4_1:560543-560562 | Msa0527880:intron | 45.0% | |
| TACAGTTTCACCGACCATTC+AGG | - | chr4_1:560740-560759 | None:intergenic | 45.0% | |
| TGGTTGAGATTTGCATGCAC+AGG | + | chr4_1:560926-560945 | Msa0527880:intron | 45.0% | |
| ATTAATCTGCAATCCGGGTG+AGG | + | chr4_1:560972-560991 | Msa0527880:intron | 45.0% | |
| TTAATCTGCAATCCGGGTGA+GGG | + | chr4_1:560973-560992 | Msa0527880:intron | 45.0% | |
| GAAACCCTTTGATTGCATGG+GGG | - | chr4_1:561410-561429 | None:intergenic | 45.0% | |
| CCTGAAACCCTTTGATTGCA+TGG | - | chr4_1:561413-561432 | None:intergenic | 45.0% | |
| CCATGCAATCAAAGGGTTTC+AGG | + | chr4_1:561410-561429 | Msa0527880:CDS | 45.0% | |
| !!! | ATAAATTTTTTAATTTATTG+TGG | + | chr4_1:561061-561080 | Msa0527880:intron | 5.0% |
| ! | AGACGCAAACCAAGTGGACT+TGG | - | chr4_1:558621-558640 | None:intergenic | 50.0% |
| TGCTGCTGATAGCAAGCTCA+AGG | + | chr4_1:558746-558765 | Msa0527880:CDS | 50.0% | |
| TCTCAAGGCAAACTACCCTG+AGG | + | chr4_1:559285-559304 | Msa0527880:CDS | 50.0% | |
| ! | ATGTTCCTGGAGCATCCTCA+GGG | - | chr4_1:559303-559322 | None:intergenic | 50.0% |
| ! | AATGTTCCTGGAGCATCCTC+AGG | - | chr4_1:559304-559323 | None:intergenic | 50.0% |
| TGAGGATGCTCCAGGAACAT+TGG | + | chr4_1:559303-559322 | Msa0527880:CDS | 50.0% | |
| !! | AAGGAGGCCCCTGTTTTTCA+GGG | + | chr4_1:559858-559877 | Msa0527880:CDS | 50.0% |
| GGGAGATCAATCCACAACCA+AGG | + | chr4_1:559878-559897 | Msa0527880:CDS | 50.0% | |
| TGCCACAAGGTATGCTTCCT+TGG | - | chr4_1:559898-559917 | None:intergenic | 50.0% | |
| GTGGACAAGCCAGCATACAT+AGG | + | chr4_1:559938-559957 | Msa0527880:CDS | 50.0% | |
| !! | CTTGAGGGCATTGCACAAAG+TGG | - | chr4_1:560237-560256 | None:intergenic | 50.0% |
| CACTTTGTGCAATGCCCTCA+AGG | + | chr4_1:560235-560254 | Msa0527880:CDS | 50.0% | |
| CAATGCCCTCAAGGTCTGTT+AGG | + | chr4_1:560244-560263 | Msa0527880:CDS | 50.0% | |
| TGGCTCAGAAAGTTGAGACG+GGG | - | chr4_1:560301-560320 | None:intergenic | 50.0% | |
| GGACTGCATGATGTGGAATC+AGG | + | chr4_1:560436-560455 | Msa0527880:CDS | 50.0% | |
| CATGATGTGGAATCAGGGTC+TGG | + | chr4_1:560442-560461 | Msa0527880:CDS | 50.0% | |
| GGAATTACCTGAGCTAGGTG+AGG | - | chr4_1:560541-560560 | None:intergenic | 50.0% | |
| !! | ATTTGGCTGCACCGGCTATA+TGG | - | chr4_1:560871-560890 | None:intergenic | 50.0% |
| CACAGGTTCAACGGTTGTAG+AGG | + | chr4_1:560943-560962 | Msa0527880:intron | 50.0% | |
| TAAAACTTCCCTCCCTCACC+CGG | - | chr4_1:560988-561007 | None:intergenic | 50.0% | |
| TCAAAGGGTTTCAGGAGCAG+AGG | + | chr4_1:561418-561437 | Msa0527880:CDS | 50.0% | |
| AACTACCCTGAGGATGCTCC+AGG | + | chr4_1:559295-559314 | Msa0527880:CDS | 55.0% | |
| !! | CAAGGAGGCCCCTGTTTTTC+AGG | + | chr4_1:559857-559876 | Msa0527880:CDS | 55.0% |
| GCCTCCCTAACAGACCTTGA+GGG | - | chr4_1:560252-560271 | None:intergenic | 55.0% | |
| TGCCTCCCTAACAGACCTTG+AGG | - | chr4_1:560253-560272 | None:intergenic | 55.0% | |
| AACCCTCAATGCCGGATCCT+CGG | + | chr4_1:560842-560861 | Msa0527880:intron | 55.0% | |
| CTATATGGCTGCCGAGGATC+CGG | - | chr4_1:560856-560875 | None:intergenic | 55.0% | |
| ATCCTCGGCAGCCATATAGC+CGG | + | chr4_1:560857-560876 | Msa0527880:intron | 55.0% | |
| TGGTCGAGATTTGGCTGCAC+CGG | - | chr4_1:560879-560898 | None:intergenic | 55.0% | |
| TCGACATCGAAGGGAAGACC+AGG | - | chr4_1:561489-561508 | None:intergenic | 55.0% | |
| GGTCTTCCCTTCGATGTCGA+TGG | + | chr4_1:561489-561508 | Msa0527880:CDS | 55.0% | |
| GCCCTCAAGGTCTGTTAGGG+AGG | + | chr4_1:560248-560267 | Msa0527880:CDS | 60.0% | |
| ! | TGCCGAGGATCCGGCATTGA+GGG | - | chr4_1:560847-560866 | None:intergenic | 60.0% |
| ATCTGCAATCCGGGTGAGGG+AGG | + | chr4_1:560976-560995 | Msa0527880:intron | 60.0% | |
| TCTGCAATCCGGGTGAGGGA+GGG | + | chr4_1:560977-560996 | Msa0527880:intron | 60.0% | |
| CTGCCGAGGATCCGGCATTG+AGG | - | chr4_1:560848-560867 | None:intergenic | 65.0% | |
| ! | CACCGGCTATATGGCTGCCG+AGG | - | chr4_1:560862-560881 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 558067 | 561515 | 558067 | ID=Msa0527880;Name=Msa0527880 |
| chr4_1 | mRNA | 558067 | 561515 | 558067 | ID=Msa0527880-mRNA-1;Parent=Msa0527880;Name=Msa0527880-mRNA-1;_AED=0.23;_eAED=0.23;_QI=124|0.6|0.66|1|1|1|6|0|375 |
| chr4_1 | exon | 558067 | 558325 | 558067 | ID=Msa0527880-mRNA-1:exon:72;Parent=Msa0527880-mRNA-1 |
| chr4_1 | exon | 558567 | 558767 | 558567 | ID=Msa0527880-mRNA-1:exon:73;Parent=Msa0527880-mRNA-1 |
| chr4_1 | exon | 559160 | 559333 | 559160 | ID=Msa0527880-mRNA-1:exon:74;Parent=Msa0527880-mRNA-1 |
| chr4_1 | exon | 559853 | 559959 | 559853 | ID=Msa0527880-mRNA-1:exon:75;Parent=Msa0527880-mRNA-1 |
| chr4_1 | exon | 560231 | 560552 | 560231 | ID=Msa0527880-mRNA-1:exon:76;Parent=Msa0527880-mRNA-1 |
| chr4_1 | exon | 561327 | 561515 | 561327 | ID=Msa0527880-mRNA-1:exon:77;Parent=Msa0527880-mRNA-1 |
| chr4_1 | five_prime_UTR | 558067 | 558190 | 558067 | ID=Msa0527880-mRNA-1:five_prime_utr;Parent=Msa0527880-mRNA-1 |
| chr4_1 | CDS | 558191 | 558325 | 558191 | ID=Msa0527880-mRNA-1:cds;Parent=Msa0527880-mRNA-1 |
| chr4_1 | CDS | 558567 | 558767 | 558567 | ID=Msa0527880-mRNA-1:cds;Parent=Msa0527880-mRNA-1 |
| chr4_1 | CDS | 559160 | 559333 | 559160 | ID=Msa0527880-mRNA-1:cds;Parent=Msa0527880-mRNA-1 |
| chr4_1 | CDS | 559853 | 559959 | 559853 | ID=Msa0527880-mRNA-1:cds;Parent=Msa0527880-mRNA-1 |
| chr4_1 | CDS | 560231 | 560552 | 560231 | ID=Msa0527880-mRNA-1:cds;Parent=Msa0527880-mRNA-1 |
| chr4_1 | CDS | 561327 | 561515 | 561327 | ID=Msa0527880-mRNA-1:cds;Parent=Msa0527880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
