Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079610 | XP_039685194.1 | 79.032 | 62 | 13 | 0 | 15 | 76 | 13 | 74 | 6.41e-25 | 110 |
| Msa0079610 | XP_039685194.1 | 92.632 | 190 | 14 | 0 | 136 | 325 | 14 | 203 | 3.20e-122 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079610 | sp|Q94BU8|GSDA_ARATH | 61.658 | 193 | 42 | 1 | 133 | 325 | 25 | 185 | 2.84e-76 | 234 |
| Msa0079610 | sp|Q94BU8|GSDA_ARATH | 42.405 | 158 | 50 | 3 | 12 | 128 | 24 | 181 | 1.03e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079610 | A0A103YG48 | 49.858 | 351 | 95 | 6 | 15 | 322 | 87 | 399 | 3.88e-104 | 320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa0079610 | 0.808432 | 3.106442e-50 | -8.615850e-47 |
| Msa0079610 | Msa0660150 | 0.800957 | 1.129338e-48 | -8.615850e-47 |
| Msa0079610 | Msa0745140 | 0.801647 | 8.158483e-49 | -8.615850e-47 |
| Msa0079610 | Msa0776640 | 0.801634 | 8.207322e-49 | -8.615850e-47 |
| Msa0079610 | Msa0805390 | 0.802776 | 4.777357e-49 | -8.615850e-47 |
| Msa0079610 | Msa0825920 | 0.803560 | 3.288523e-49 | -8.615850e-47 |
| Msa0079610 | Msa1119430 | 0.804119 | 2.517190e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079610 | MtrunA17_Chr1g0191001 | 80.808 | 198 | 5 | 2 | 129 | 325 | 4 | 169 | 2.26e-105 | 305 |
| Msa0079610 | MtrunA17_Chr1g0191001 | 52.903 | 155 | 32 | 3 | 15 | 128 | 11 | 165 | 7.37e-43 | 145 |
| Msa0079610 | MtrunA17_Chr2g0302351 | 58.796 | 216 | 48 | 2 | 119 | 325 | 2 | 185 | 2.05e-79 | 239 |
| Msa0079610 | MtrunA17_Chr2g0302351 | 47.468 | 158 | 42 | 3 | 12 | 128 | 24 | 181 | 1.80e-35 | 127 |
| Msa0079610 | MtrunA17_Chr4g0069501 | 62.694 | 193 | 40 | 1 | 133 | 325 | 26 | 186 | 5.85e-78 | 236 |
| Msa0079610 | MtrunA17_Chr4g0069501 | 45.860 | 157 | 44 | 3 | 13 | 128 | 26 | 182 | 4.59e-34 | 123 |
| Msa0079610 | MtrunA17_Chr1g0190991 | 71.519 | 158 | 10 | 1 | 15 | 137 | 25 | 182 | 1.24e-68 | 212 |
| Msa0079610 | MtrunA17_Chr1g0190991 | 55.376 | 186 | 45 | 3 | 136 | 321 | 26 | 173 | 1.88e-62 | 196 |
| Msa0079610 | MtrunA17_Chr1g0190971 | 55.385 | 195 | 48 | 3 | 126 | 319 | 3 | 159 | 8.33e-64 | 199 |
| Msa0079610 | MtrunA17_Chr1g0190971 | 66.049 | 162 | 16 | 3 | 1 | 126 | 1 | 159 | 4.15e-61 | 192 |
| Msa0079610 | MtrunA17_Chr3g0077671 | 51.579 | 190 | 24 | 4 | 133 | 322 | 75 | 196 | 7.45e-47 | 160 |
| Msa0079610 | MtrunA17_Chr3g0077671 | 50.725 | 138 | 29 | 3 | 13 | 128 | 75 | 195 | 1.41e-29 | 114 |
| Msa0079610 | MtrunA17_Chr1g0190981 | 60.241 | 83 | 19 | 3 | 136 | 218 | 19 | 87 | 5.74e-24 | 94.0 |
| Msa0079610 | MtrunA17_Chr1g0190981 | 61.290 | 62 | 18 | 1 | 15 | 76 | 18 | 73 | 1.69e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079610 | AT5G28050.1 | 61.658 | 193 | 42 | 1 | 133 | 325 | 25 | 185 | 2.88e-77 | 234 |
| Msa0079610 | AT5G28050.1 | 42.405 | 158 | 50 | 3 | 12 | 128 | 24 | 181 | 1.05e-31 | 117 |
| Msa0079610 | AT5G28050.2 | 61.658 | 193 | 42 | 1 | 133 | 325 | 44 | 204 | 6.30e-77 | 234 |
| Msa0079610 | AT5G28050.2 | 42.405 | 158 | 50 | 3 | 12 | 128 | 43 | 200 | 1.65e-31 | 117 |
| Msa0079610 | AT5G28050.3 | 61.658 | 193 | 42 | 1 | 133 | 325 | 130 | 290 | 6.72e-77 | 237 |
| Msa0079610 | AT5G28050.3 | 42.675 | 157 | 49 | 3 | 13 | 128 | 130 | 286 | 5.17e-31 | 118 |
| Msa0079610 | AT3G05300.1 | 48.299 | 147 | 41 | 2 | 178 | 324 | 1 | 112 | 4.72e-37 | 129 |
| Msa0079610 | AT1G68720.1 | 36.735 | 98 | 57 | 2 | 138 | 235 | 1110 | 1202 | 1.58e-11 | 65.9 |
Find 55 sgRNAs with CRISPR-Local
Find 468 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGATTTAGTAATTATAT+TGG | 0.292521 | 1_2:+57548823 | Msa0079610:CDS |
| ATCAAGCAGAGAATGGTTTA+TGG | 0.295789 | 1_2:+57548775 | Msa0079610:intron |
| TGCTACTGCAGCTTCTGCTT+TGG | 0.313323 | 1_2:-57553429 | None:intergenic |
| GCTGCTACTCCTGCTGCTAA+TGG | 0.383979 | 1_2:+57545875 | Msa0079610:CDS |
| AGAAGCATAGATTTCACAAT+TGG | 0.397370 | 1_2:-57553243 | None:intergenic |
| GGAGAAGCTGCAAGATCAAT+TGG | 0.402712 | 1_2:+57548805 | Msa0079610:CDS |
| GCAGAAGCTGCAGTAGCAAT+TGG | 0.426048 | 1_2:+57553434 | Msa0079610:CDS |
| TATTCACATCAAGCAGAGAT+TGG | 0.426235 | 1_2:+57553397 | Msa0079610:CDS |
| CGAACAATCAGTGCACCATA+TGG | 0.427952 | 1_2:-57546913 | None:intergenic |
| ATCAAGCAGAGATTGGTTTA+CGG | 0.435830 | 1_2:+57553404 | Msa0079610:CDS |
| CGAACAATCACTGCACCAAA+CGG | 0.441051 | 1_2:-57552402 | None:intergenic |
| GAACCTTGTCCAATGTGCTT+TGG | 0.452078 | 1_2:+57553269 | Msa0079610:CDS |
| GCATATGAAGCTGTTGAATC+TGG | 0.453061 | 1_2:+57546880 | Msa0079610:CDS |
| CTCAATAACAAGTCAAAGAC+GGG | 0.462175 | 1_2:+57545789 | Msa0079610:five_prime_UTR |
| TGTGGTGATGGACGCCCGTT+TGG | 0.484413 | 1_2:+57552387 | Msa0079610:CDS |
| GCTGTTGAAGAAGCATATAA+AGG | 0.489901 | 1_2:+57552357 | Msa0079610:CDS |
| TCATTCTTTCTATACCATCA+TGG | 0.494793 | 1_2:+57545841 | Msa0079610:exon |
| CATAGATTTCACAATTGGTA+AGG | 0.495459 | 1_2:-57553238 | None:intergenic |
| GAACAATCACTGCACCAAAC+GGG | 0.510407 | 1_2:-57552401 | None:intergenic |
| CAAGTATTTGAGAAGACAAA+GGG | 0.516738 | 1_2:+57553560 | Msa0079610:CDS |
| TTACATAAATGAATAGTGTA+AGG | 0.517238 | 1_2:-57553343 | None:intergenic |
| TCTGCAGGCTTGTCAAAAGC+TGG | 0.523037 | 1_2:+57553205 | Msa0079610:intron |
| TTCTTGTCAGAAGGCCCAGT+TGG | 0.527154 | 1_2:+57553496 | Msa0079610:CDS |
| TTTAGTAATTATATTGGCAA+GGG | 0.530272 | 1_2:+57548829 | Msa0079610:CDS |
| ATCACTTCGCTTCTGTGCAT+CGG | 0.534983 | 1_2:-57553474 | None:intergenic |
| GAACAATCAGTGCACCATAT+GGG | 0.543114 | 1_2:-57546912 | None:intergenic |
| ATTTAGTAATTATATTGGCA+AGG | 0.547598 | 1_2:+57548828 | Msa0079610:CDS |
| ATGATCTCAGCATGAGCAGT+TGG | 0.550399 | 1_2:-57546988 | None:intergenic |
| TTAGTATTACCATTAGCAGC+AGG | 0.551637 | 1_2:-57545884 | None:intergenic |
| TGATCTTGCAGCTTCTCCTG+TGG | 0.555500 | 1_2:-57548800 | None:intergenic |
| AGAATGGTTTATGGAGCCAC+AGG | 0.555557 | 1_2:+57548784 | Msa0079610:CDS |
| AGTAACCTCAGCATGAGCAG+TGG | 0.566858 | 1_2:-57552478 | None:intergenic |
| TCTGGTGATGGATACCCATA+TGG | 0.575775 | 1_2:+57546898 | Msa0079610:CDS |
| TGAGGTTACTGCTATAAGAA+AGG | 0.575815 | 1_2:+57552491 | Msa0079610:CDS |
| TCTCATTATACCAGCTGCAG+AGG | 0.577400 | 1_2:+57546819 | Msa0079610:intron |
| GCGAAGTGATTCTTGTCAGA+AGG | 0.577533 | 1_2:+57553487 | Msa0079610:CDS |
| GTAACCTCAGCATGAGCAGT+GGG | 0.584452 | 1_2:-57552477 | None:intergenic |
| AGCAGCATCATGTTCCATGA+TGG | 0.588116 | 1_2:-57545855 | None:intergenic |
| TCTCAATAACAAGTCAAAGA+CGG | 0.589257 | 1_2:+57545788 | Msa0079610:five_prime_UTR |
| AGTTGTAAGCTGTCATAACA+TGG | 0.589471 | 1_2:+57552437 | Msa0079610:CDS |
| TAGTGTAAGGAGAAAATGAG+AGG | 0.591723 | 1_2:-57553330 | None:intergenic |
| AAAGGTGTTGAATGTGGTGA+TGG | 0.595770 | 1_2:+57552375 | Msa0079610:CDS |
| ACAAGTATTTGAGAAGACAA+AGG | 0.601176 | 1_2:+57553559 | Msa0079610:CDS |
| AGAAGTATTTGAGAAGACAA+AGG | 0.606818 | 1_2:+57548912 | Msa0079610:CDS |
| AGTGTAAGGAGAAAATGAGA+GGG | 0.615830 | 1_2:-57553329 | None:intergenic |
| AGTCAAAGACGGGTTTAGTG+TGG | 0.620279 | 1_2:+57545799 | Msa0079610:five_prime_UTR |
| GAAGCTGTTGAATCTGGTGA+TGG | 0.621594 | 1_2:+57546886 | Msa0079610:CDS |
| GCACCAAAGCACATTGGACA+AGG | 0.638481 | 1_2:-57553272 | None:intergenic |
| GCATATAAAGGTGTTGAATG+TGG | 0.638640 | 1_2:+57552369 | Msa0079610:CDS |
| GTGTAAGGAGAAAATGAGAG+GGG | 0.644411 | 1_2:-57553328 | None:intergenic |
| AGATCCCACTGCTCATGCTG+AGG | 0.645138 | 1_2:+57552473 | Msa0079610:CDS |
| TTAATGGCACCAAAGCACAT+TGG | 0.660101 | 1_2:-57553278 | None:intergenic |
| ATATGTGATCAATTTAACAG+TGG | 0.667704 | 1_2:-57553366 | None:intergenic |
| ATTTGAGAAGACAAAGGACA+AGG | 0.678760 | 1_2:+57548918 | Msa0079610:CDS |
| TGAGATCATTGCTATAAGAG+AGG | 0.679141 | 1_2:+57547002 | Msa0079610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTGGTTAAAATTTATAT+GGG | - | chr1_2:57546425-57546444 | None:intergenic | 10.0% |
| !! | TTAATTGGTTAAAATTTATA+TGG | - | chr1_2:57546426-57546445 | None:intergenic | 10.0% |
| !!! | ACTTTTTTTTTTTTTTGAAA+CGG | - | chr1_2:57548328-57548347 | None:intergenic | 10.0% |
| !! | TATAAAAAAAAATGAAACTA+AGG | - | chr1_2:57549390-57549409 | None:intergenic | 10.0% |
| !!! | ATTTAAGATCAAATTTTTTT+AGG | - | chr1_2:57549679-57549698 | None:intergenic | 10.0% |
| !!! | ATTCTAAAACATATTTAAAA+TGG | + | chr1_2:57550052-57550071 | Msa0079610:intron | 10.0% |
| !! | TGAATTCATTTATATAAAAA+GGG | - | chr1_2:57550759-57550778 | None:intergenic | 10.0% |
| !! | TTGAATTCATTTATATAAAA+AGG | - | chr1_2:57550760-57550779 | None:intergenic | 10.0% |
| !!! | CAAAATTTTGAATATTTATA+AGG | + | chr1_2:57551080-57551099 | Msa0079610:intron | 10.0% |
| !! | GTTATGATTATTAATAAATA+GGG | - | chr1_2:57551119-57551138 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTTAAAAACAATA+TGG | + | chr1_2:57551617-57551636 | Msa0079610:intron | 10.0% |
| !!! | TTTTTCAATACTATTTTAAA+AGG | + | chr1_2:57551930-57551949 | Msa0079610:intron | 10.0% |
| !! | GAACTTTATAATTCAATATT+AGG | - | chr1_2:57546097-57546116 | None:intergenic | 15.0% |
| !!! | TCTAACACATTTAATTTAAT+TGG | - | chr1_2:57546441-57546460 | None:intergenic | 15.0% |
| !! | ATTGAAAAAATATGATTGAT+TGG | + | chr1_2:57546509-57546528 | Msa0079610:intron | 15.0% |
| !!! | GTCAAATATTTTTTACAAAT+TGG | + | chr1_2:57546737-57546756 | Msa0079610:intron | 15.0% |
| !!! | AAATGTGTGATTTTTTTTAA+TGG | - | chr1_2:57547219-57547238 | None:intergenic | 15.0% |
| !! | AAAAAACACAAAATAACAAA+TGG | - | chr1_2:57547371-57547390 | None:intergenic | 15.0% |
| !!! | AATTTGTTTTGTTTATAAGT+GGG | - | chr1_2:57547515-57547534 | None:intergenic | 15.0% |
| !! | AAATATAGTTCAAATTTCAT+TGG | + | chr1_2:57547918-57547937 | Msa0079610:intron | 15.0% |
| !!! | TATTCATTTTTCAAAAATCA+AGG | + | chr1_2:57548665-57548684 | Msa0079610:intron | 15.0% |
| !! | ATTGGATTTAGTAATTATAT+TGG | + | chr1_2:57548823-57548842 | Msa0079610:CDS | 15.0% |
| !!! | ACTTCTTAAATTGATAATTT+TGG | + | chr1_2:57549902-57549921 | Msa0079610:intron | 15.0% |
| !!! | CTTCTTAAATTGATAATTTT+GGG | + | chr1_2:57549903-57549922 | Msa0079610:intron | 15.0% |
| !!! | TTCTTAAATTGATAATTTTG+GGG | + | chr1_2:57549904-57549923 | Msa0079610:intron | 15.0% |
| !! | TCGGAAATTTATAATATTAT+CGG | - | chr1_2:57550166-57550185 | None:intergenic | 15.0% |
| !! | TAAATAAAAACAGAAAAATG+TGG | - | chr1_2:57550275-57550294 | None:intergenic | 15.0% |
| !!! | CATTTTTCTGTTTTTATTTA+TGG | + | chr1_2:57550275-57550294 | Msa0079610:intron | 15.0% |
| !! | TATTTAAAAAAAGAGTAATG+AGG | + | chr1_2:57550824-57550843 | Msa0079610:intron | 15.0% |
| !! | CGAAATTCTAAATATTTATA+AGG | - | chr1_2:57550882-57550901 | None:intergenic | 15.0% |
| !!! | GTTCTTATAAAATTTTTCAA+CGG | + | chr1_2:57550978-57550997 | Msa0079610:intron | 15.0% |
| !!! | ATTTTTCTTTATCCTTTTTA+GGG | - | chr1_2:57551014-57551033 | None:intergenic | 15.0% |
| !!! | TAATGTGATATTATTTTGTA+AGG | + | chr1_2:57551049-57551068 | Msa0079610:intron | 15.0% |
| !! | GGTTATGATTATTAATAAAT+AGG | - | chr1_2:57551120-57551139 | None:intergenic | 15.0% |
| !!! | TTTTAGTAAATATGATAAGT+TGG | - | chr1_2:57551141-57551160 | None:intergenic | 15.0% |
| !! | AAAACAGTAAAAAATAGATA+TGG | - | chr1_2:57553116-57553135 | None:intergenic | 15.0% |
| !!! | CTTAATTTTTGAAAGATTAA+TGG | - | chr1_2:57553297-57553316 | None:intergenic | 15.0% |
| !! | CATTAATCTTTCAAAAATTA+AGG | + | chr1_2:57553295-57553314 | Msa0079610:CDS | 15.0% |
| !! | TATTATGCTGAAATTTGAAA+AGG | + | chr1_2:57546700-57546719 | Msa0079610:intron | 20.0% |
| !! | ATTATGCTGAAATTTGAAAA+GGG | + | chr1_2:57546701-57546720 | Msa0079610:intron | 20.0% |
| !!! | CAGATTTTATTATGAACTTT+TGG | - | chr1_2:57546852-57546871 | None:intergenic | 20.0% |
| !!! | AATAGTTTGTTAAATGAAAG+AGG | + | chr1_2:57547249-57547268 | Msa0079610:intron | 20.0% |
| !!! | ATTTGTTTTGTTTATAAGTG+GGG | - | chr1_2:57547514-57547533 | None:intergenic | 20.0% |
| !!! | CAATTTGTTTTGTTTATAAG+TGG | - | chr1_2:57547516-57547535 | None:intergenic | 20.0% |
| !! | TATAAACAAAACAAATTGTC+AGG | + | chr1_2:57547518-57547537 | Msa0079610:intron | 20.0% |
| !! | AACTGTTTAAACAGAAATAA+TGG | + | chr1_2:57547775-57547794 | Msa0079610:intron | 20.0% |
| !! | AATTTGAACTATATTTCATG+AGG | - | chr1_2:57547914-57547933 | None:intergenic | 20.0% |
| !! | ATTTGAATAACAAATTGAGA+AGG | + | chr1_2:57548443-57548462 | Msa0079610:intron | 20.0% |
| !! | TTACCTTATGTTATACTAAT+TGG | + | chr1_2:57548546-57548565 | Msa0079610:intron | 20.0% |
| !! | ATTCCAATTAGTATAACATA+AGG | - | chr1_2:57548552-57548571 | None:intergenic | 20.0% |
| !! | ATTTAGTAATTATATTGGCA+AGG | + | chr1_2:57548828-57548847 | Msa0079610:CDS | 20.0% |
| !! | TTTAGTAATTATATTGGCAA+GGG | + | chr1_2:57548829-57548848 | Msa0079610:CDS | 20.0% |
| !! | ACAAGTTATATTCAAAAGTA+GGG | - | chr1_2:57549292-57549311 | None:intergenic | 20.0% |
| !!! | AGTTACTTGTATTTATTTTC+TGG | + | chr1_2:57549474-57549493 | Msa0079610:intron | 20.0% |
| !! | AAAGTCTCTTAAATAATTGA+GGG | - | chr1_2:57549600-57549619 | None:intergenic | 20.0% |
| !! | TAAAGTCTCTTAAATAATTG+AGG | - | chr1_2:57549601-57549620 | None:intergenic | 20.0% |
| !!! | TTGATGATGATTATAGTAAA+AGG | - | chr1_2:57549872-57549891 | None:intergenic | 20.0% |
| !! | TTACAATTGAACAATTAAGA+AGG | - | chr1_2:57549956-57549975 | None:intergenic | 20.0% |
| !! | TGTATAATATATGCAAGATA+CGG | + | chr1_2:57550107-57550126 | Msa0079610:intron | 20.0% |
| !!! | TATTATCGGATAATTGTTTT+TGG | - | chr1_2:57550152-57550171 | None:intergenic | 20.0% |
| !! | TACTTCATTAAAAAAGCTTA+TGG | + | chr1_2:57550303-57550322 | Msa0079610:intron | 20.0% |
| !!! | AATTTTAACATTTCTCGTAT+CGG | - | chr1_2:57550390-57550409 | None:intergenic | 20.0% |
| !! | ATAAGAACTAAAAATGTTGA+TGG | - | chr1_2:57550966-57550985 | None:intergenic | 20.0% |
| !!! | CATTTTTCTTTATCCTTTTT+AGG | - | chr1_2:57551015-57551034 | None:intergenic | 20.0% |
| !! | ATTATCCAGAAAATATATGA+TGG | - | chr1_2:57551555-57551574 | None:intergenic | 20.0% |
| !! | ATCCTTATCTGATTTAAATA+AGG | - | chr1_2:57551831-57551850 | None:intergenic | 20.0% |
| !! | ATTGAAAAAGTAATCATTCA+AGG | - | chr1_2:57551919-57551938 | None:intergenic | 20.0% |
| !!! | GAGATAACATTTTTTTGATT+CGG | - | chr1_2:57552004-57552023 | None:intergenic | 20.0% |
| !! | ATGAGTTATCATTTAGATTA+TGG | + | chr1_2:57552257-57552276 | Msa0079610:intron | 20.0% |
| !! | AAAAATGAGATCATTCAATT+TGG | - | chr1_2:57552298-57552317 | None:intergenic | 20.0% |
| !! | GAATAGCTTATTAAAACAAA+AGG | + | chr1_2:57552563-57552582 | Msa0079610:intron | 20.0% |
| !! | AAAAGAAATCTTAAAACTTC+AGG | - | chr1_2:57552841-57552860 | None:intergenic | 20.0% |
| !! | TGGTATAGAAAAAATAATTG+TGG | - | chr1_2:57553096-57553115 | None:intergenic | 20.0% |
| !! | ATATTTCCAATTAGTATAGA+AGG | - | chr1_2:57553185-57553204 | None:intergenic | 20.0% |
| !! | TTACATAAATGAATAGTGTA+AGG | - | chr1_2:57553346-57553365 | None:intergenic | 20.0% |
| !!! | CTTCATATATTATCGCTTTT+TGG | + | chr1_2:57545918-57545937 | Msa0079610:intron | 25.0% |
| ! | GCATTATTCAATCAACAAAA+AGG | - | chr1_2:57546195-57546214 | None:intergenic | 25.0% |
| ! | TGAATACTAACATTTGTCAT+TGG | - | chr1_2:57546255-57546274 | None:intergenic | 25.0% |
| ! | TTAAAAGAGTTTGATGTCTT+GGG | - | chr1_2:57546317-57546336 | None:intergenic | 25.0% |
| ! | GTATTATGCAAAATGTATAC+TGG | + | chr1_2:57546586-57546605 | Msa0079610:intron | 25.0% |
| !! | AATACTTAGAAGTACATTTC+AGG | - | chr1_2:57546798-57546817 | None:intergenic | 25.0% |
| ! | ATGCCAAAGTAAAGAATTTA+CGG | - | chr1_2:57547426-57547445 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTTATAAGTGG+GGG | - | chr1_2:57547513-57547532 | None:intergenic | 25.0% |
| !! | TGACAATTTGTTTATAAGTG+GGG | - | chr1_2:57547717-57547736 | None:intergenic | 25.0% |
| !! | CTGACAATTTGTTTATAAGT+GGG | - | chr1_2:57547718-57547737 | None:intergenic | 25.0% |
| ! | TAAACAGAAATAATGGTATC+TGG | + | chr1_2:57547782-57547801 | Msa0079610:intron | 25.0% |
| ! | AAAAAATCAATGTGTCTATG+AGG | + | chr1_2:57547869-57547888 | Msa0079610:intron | 25.0% |
| ! | AACAAAATCGAAATACAAAC+AGG | - | chr1_2:57548253-57548272 | None:intergenic | 25.0% |
| !! | AAATTTTATTAGGCAGAACT+CGG | - | chr1_2:57548303-57548322 | None:intergenic | 25.0% |
| !! | TGAAACGGCTAAATTTTATT+AGG | - | chr1_2:57548313-57548332 | None:intergenic | 25.0% |
| ! | TTCGAGATAAAAAAGATAGA+TGG | + | chr1_2:57548868-57548887 | Msa0079610:CDS | 25.0% |
| !! | TAGTACTAATGTTTTCTTGT+TGG | + | chr1_2:57549210-57549229 | Msa0079610:intron | 25.0% |
| !! | AGTACTAATGTTTTCTTGTT+GGG | + | chr1_2:57549211-57549230 | Msa0079610:intron | 25.0% |
| ! | CACAAGTTATATTCAAAAGT+AGG | - | chr1_2:57549293-57549312 | None:intergenic | 25.0% |
| ! | TGGTTTAGAAGTAGTAATTT+CGG | + | chr1_2:57549494-57549513 | Msa0079610:intron | 25.0% |
| ! | GGTTCAAATAGAACAAAATT+TGG | - | chr1_2:57549768-57549787 | None:intergenic | 25.0% |
| ! | ATGATTATAGTAAAAGGAAG+AGG | - | chr1_2:57549866-57549885 | None:intergenic | 25.0% |
| ! | TGTGTCTAAATAATAAACTG+AGG | - | chr1_2:57550003-57550022 | None:intergenic | 25.0% |
| ! | TTTAGACACATTATTAGTAG+TGG | + | chr1_2:57550013-57550032 | Msa0079610:intron | 25.0% |
| !!! | TAATTGTTTTTGGTGATGTT+GGG | - | chr1_2:57550142-57550161 | None:intergenic | 25.0% |
| !!! | ATAATTGTTTTTGGTGATGT+TGG | - | chr1_2:57550143-57550162 | None:intergenic | 25.0% |
| !!! | TTTCTTATTGGCTTAAATCA+TGG | + | chr1_2:57550569-57550588 | Msa0079610:intron | 25.0% |
| !!! | TTTTGACTAATGTGAAAATG+AGG | - | chr1_2:57550710-57550729 | None:intergenic | 25.0% |
| !! | AGAAATTGATAGCTTATTCA+GGG | + | chr1_2:57550799-57550818 | Msa0079610:intron | 25.0% |
| !! | TAATGAGGTCATATTTGTTA+AGG | + | chr1_2:57550839-57550858 | Msa0079610:intron | 25.0% |
| !!! | AAGTGCGATTTTATTTTGTA+GGG | - | chr1_2:57550913-57550932 | None:intergenic | 25.0% |
| !!! | AAAGTGCGATTTTATTTTGT+AGG | - | chr1_2:57550914-57550933 | None:intergenic | 25.0% |
| !!! | TGTTGATGGAAAATTTTACT+GGG | - | chr1_2:57550952-57550971 | None:intergenic | 25.0% |
| !!! | ATGTTGATGGAAAATTTTAC+TGG | - | chr1_2:57550953-57550972 | None:intergenic | 25.0% |
| ! | GGATAAAGAAAAATGTTACA+TGG | + | chr1_2:57551020-57551039 | Msa0079610:intron | 25.0% |
| !! | TTTTTCCAGATTTCAAAACA+CGG | + | chr1_2:57551298-57551317 | Msa0079610:intron | 25.0% |
| ! | CTTTAATTGTATGAGTGAAA+TGG | - | chr1_2:57551429-57551448 | None:intergenic | 25.0% |
| ! | AAATATATGATGGCAATCAA+TGG | - | chr1_2:57551545-57551564 | None:intergenic | 25.0% |
| ! | TTGTTAAAAACAATATGGTG+CGG | + | chr1_2:57551622-57551641 | Msa0079610:intron | 25.0% |
| ! | TTTGTGTATCCATTGTATTT+AGG | - | chr1_2:57551802-57551821 | None:intergenic | 25.0% |
| !! | CTCCTTATTTAAATCAGATA+AGG | + | chr1_2:57551826-57551845 | Msa0079610:intron | 25.0% |
| !!! | AGTGCCATTGTATTTATTTT+GGG | - | chr1_2:57551980-57551999 | None:intergenic | 25.0% |
| !!! | TAGTGCCATTGTATTTATTT+TGG | - | chr1_2:57551981-57552000 | None:intergenic | 25.0% |
| ! | TATTATCATCATTCATCACA+TGG | + | chr1_2:57552075-57552094 | Msa0079610:intron | 25.0% |
| ! | TTATTACTAACACCAAATTG+TGG | - | chr1_2:57552214-57552233 | None:intergenic | 25.0% |
| !! | ATAACTCATAAAAGTGTAAG+TGG | - | chr1_2:57552246-57552265 | None:intergenic | 25.0% |
| ! | CTTATTAAAACAAAAGGTCT+TGG | + | chr1_2:57552569-57552588 | Msa0079610:intron | 25.0% |
| !! | AAATTGCTGAATGTTCATTT+TGG | + | chr1_2:57552973-57552992 | Msa0079610:intron | 25.0% |
| ! | ATATGTGATCAATTTAACAG+TGG | - | chr1_2:57553369-57553388 | None:intergenic | 25.0% |
| !!! | TATCTTTTTTATCTCCAACT+GGG | - | chr1_2:57553513-57553532 | None:intergenic | 25.0% |
| ! | TTGGAGATAAAAAAGATAGA+TGG | + | chr1_2:57553515-57553534 | Msa0079610:CDS | 25.0% |
| !!! | GAATACATTTTTTGATGCAG+CGG | - | chr1_2:57545770-57545789 | None:intergenic | 30.0% |
| TCTCAATAACAAGTCAAAGA+CGG | + | chr1_2:57545788-57545807 | Msa0079610:five_prime_UTR | 30.0% | |
| TCATTCTTTCTATACCATCA+TGG | + | chr1_2:57545841-57545860 | Msa0079610:exon | 30.0% | |
| AACTACTACTTGCATTACTA+TGG | + | chr1_2:57546014-57546033 | Msa0079610:intron | 30.0% | |
| ! | TTTGATTGTTGATAGAAACC+AGG | + | chr1_2:57546055-57546074 | Msa0079610:intron | 30.0% |
| AAATGTGTTGAAGAGTTCAT+TGG | - | chr1_2:57546225-57546244 | None:intergenic | 30.0% | |
| GTTAAAAGAGTTTGATGTCT+TGG | - | chr1_2:57546318-57546337 | None:intergenic | 30.0% | |
| !! | CAAACTCTTTTAACTCAAAC+CGG | + | chr1_2:57546324-57546343 | Msa0079610:intron | 30.0% |
| GACTCATTTAACTATTTCAC+AGG | + | chr1_2:57546564-57546583 | Msa0079610:intron | 30.0% | |
| TAATAGCGACTAAACTACTT+TGG | - | chr1_2:57546633-57546652 | None:intergenic | 30.0% | |
| TGTAATCTGACATTTCTTTG+AGG | + | chr1_2:57547072-57547091 | Msa0079610:intron | 30.0% | |
| GTAATCTGACATTTCTTTGA+GGG | + | chr1_2:57547073-57547092 | Msa0079610:intron | 30.0% | |
| CTAAGTGATTAAAAGAGTTG+AGG | + | chr1_2:57547119-57547138 | Msa0079610:intron | 30.0% | |
| TTGTTAAATGAAAGAGGTCT+TGG | + | chr1_2:57547255-57547274 | Msa0079610:intron | 30.0% | |
| GTTTCCAACAATGATTGATA+TGG | + | chr1_2:57547317-57547336 | Msa0079610:intron | 30.0% | |
| TCAACCATATCAATCATTGT+TGG | - | chr1_2:57547324-57547343 | None:intergenic | 30.0% | |
| ATGATTGATATGGTTGAATG+AGG | + | chr1_2:57547327-57547346 | Msa0079610:intron | 30.0% | |
| TGATTGATATGGTTGAATGA+GGG | + | chr1_2:57547328-57547347 | Msa0079610:intron | 30.0% | |
| AAGAATTTACGGAGAAACAA+AGG | - | chr1_2:57547415-57547434 | None:intergenic | 30.0% | |
| TCTCCGTAAATTCTTTACTT+TGG | + | chr1_2:57547420-57547439 | Msa0079610:intron | 30.0% | |
| TGGCATAATATTAGAAATCG+TGG | + | chr1_2:57547440-57547459 | Msa0079610:intron | 30.0% | |
| TGATACCATATTAGAAATCG+TGG | + | chr1_2:57547643-57547662 | Msa0079610:intron | 30.0% | |
| ! | GACAATTTGTTTATAAGTGG+GGG | - | chr1_2:57547716-57547735 | None:intergenic | 30.0% |
| ! | CCTGACAATTTGTTTATAAG+TGG | - | chr1_2:57547719-57547738 | None:intergenic | 30.0% |
| CCACTTATAAACAAATTGTC+AGG | + | chr1_2:57547716-57547735 | Msa0079610:intron | 30.0% | |
| AGAAATAATGGTATCTGGAT+TGG | + | chr1_2:57547787-57547806 | Msa0079610:intron | 30.0% | |
| ACAGTTGTTTGTACTTTGAA+TGG | + | chr1_2:57547943-57547962 | Msa0079610:intron | 30.0% | |
| GCAAAACACAAAAAAACAGA+TGG | - | chr1_2:57548035-57548054 | None:intergenic | 30.0% | |
| !!! | TCTGTTTTTTTGTGTTTTGC+TGG | + | chr1_2:57548035-57548054 | Msa0079610:intron | 30.0% |
| GAATAACAAATTGAGAAGGT+TGG | + | chr1_2:57548447-57548466 | Msa0079610:intron | 30.0% | |
| ! | TGCTGAATGTTCATTTTGTT+TGG | + | chr1_2:57548484-57548503 | Msa0079610:intron | 30.0% |
| TATTGTGAAGACAAAATGAG+AGG | - | chr1_2:57548704-57548723 | None:intergenic | 30.0% | |
| !! | AGAAGTATTTGAGAAGACAA+AGG | + | chr1_2:57548912-57548931 | Msa0079610:CDS | 30.0% |
| ! | TGTATACTCTTTTACCATGA+TGG | - | chr1_2:57548973-57548992 | None:intergenic | 30.0% |
| TATACAAGTTACACTTGTTC+CGG | + | chr1_2:57548987-57549006 | Msa0079610:intron | 30.0% | |
| TGATAGGAAATTGGAATTTC+CGG | - | chr1_2:57549009-57549028 | None:intergenic | 30.0% | |
| AGCTCTTTATGATAGGAAAT+TGG | - | chr1_2:57549018-57549037 | None:intergenic | 30.0% | |
| CATGAATAGCTCTTTATGAT+AGG | - | chr1_2:57549025-57549044 | None:intergenic | 30.0% | |
| GTTTCTCATTTCATGATTCT+TGG | + | chr1_2:57549418-57549437 | Msa0079610:intron | 30.0% | |
| !! | TAATTTCGGTACTGAGTTTT+TGG | + | chr1_2:57549508-57549527 | Msa0079610:intron | 30.0% |
| TTGGTATTTATTTGTACCAG+AGG | + | chr1_2:57549527-57549546 | Msa0079610:intron | 30.0% | |
| ATTTGAGGATGGAGAAATTA+CGG | - | chr1_2:57549789-57549808 | None:intergenic | 30.0% | |
| !! | GTGGAGTATTGATTAAACTA+AGG | - | chr1_2:57549981-57550000 | None:intergenic | 30.0% |
| GTCTAAATAATAAACTGAGG+TGG | - | chr1_2:57550000-57550019 | None:intergenic | 30.0% | |
| ! | TTAGTTTAGCTAAGTTGACA+AGG | + | chr1_2:57550080-57550099 | Msa0079610:intron | 30.0% |
| !!! | AATTGTTTTTGGTGATGTTG+GGG | - | chr1_2:57550141-57550160 | None:intergenic | 30.0% |
| TACATATACTTGACACGATA+TGG | + | chr1_2:57550356-57550375 | Msa0079610:intron | 30.0% | |
| AAGAAATTGTGTGTTGGAAA+GGG | - | chr1_2:57550555-57550574 | None:intergenic | 30.0% | |
| TAAGAAATTGTGTGTTGGAA+AGG | - | chr1_2:57550556-57550575 | None:intergenic | 30.0% | |
| TCCAACACACAATTTCTTAT+TGG | + | chr1_2:57550557-57550576 | Msa0079610:intron | 30.0% | |
| AAAATGAGTTCGATTCAAAG+TGG | + | chr1_2:57550608-57550627 | Msa0079610:intron | 30.0% | |
| ! | GAGAAATTGATAGCTTATTC+AGG | + | chr1_2:57550798-57550817 | Msa0079610:intron | 30.0% |
| !! | TCGCACTTTTTAAGCATTTT+TGG | + | chr1_2:57550925-57550944 | Msa0079610:intron | 30.0% |
| TGTATACATGCAATGCAATT+GGG | + | chr1_2:57551220-57551239 | Msa0079610:intron | 30.0% | |
| ! | TTTTCCAGATTTCAAAACAC+GGG | + | chr1_2:57551299-57551318 | Msa0079610:intron | 30.0% |
| ! | CATGTTTGGTTATGATTTTG+GGG | - | chr1_2:57551346-57551365 | None:intergenic | 30.0% |
| ! | GCATGTTTGGTTATGATTTT+GGG | - | chr1_2:57551347-57551366 | None:intergenic | 30.0% |
| ! | TGCATGTTTGGTTATGATTT+TGG | - | chr1_2:57551348-57551367 | None:intergenic | 30.0% |
| TGTATGAGTGAAATGGTTTA+GGG | - | chr1_2:57551422-57551441 | None:intergenic | 30.0% | |
| TTGTATGAGTGAAATGGTTT+AGG | - | chr1_2:57551423-57551442 | None:intergenic | 30.0% | |
| ! | GATTGCCATCATATATTTTC+TGG | + | chr1_2:57551547-57551566 | Msa0079610:intron | 30.0% |
| ATTTATTACAACATTGCGTC+TGG | + | chr1_2:57551573-57551592 | Msa0079610:intron | 30.0% | |
| TGTTAAAAACAATATGGTGC+GGG | + | chr1_2:57551623-57551642 | Msa0079610:intron | 30.0% | |
| ATACCCAAACTTATTAAGGA+CGG | + | chr1_2:57551664-57551683 | Msa0079610:intron | 30.0% | |
| ATCTCCATTGAATATGACTA+GGG | + | chr1_2:57551706-57551725 | Msa0079610:intron | 30.0% | |
| TTGTATTTAGGCATAGCAAT+GGG | - | chr1_2:57551790-57551809 | None:intergenic | 30.0% | |
| ATTGTATTTAGGCATAGCAA+TGG | - | chr1_2:57551791-57551810 | None:intergenic | 30.0% | |
| ATTGCTATGCCTAAATACAA+TGG | + | chr1_2:57551790-57551809 | Msa0079610:intron | 30.0% | |
| TGCTCCCAAAATAAATACAA+TGG | + | chr1_2:57551973-57551992 | Msa0079610:intron | 30.0% | |
| TCTCAACAAAAAGTCAAAGA+CGG | + | chr1_2:57552020-57552039 | Msa0079610:intron | 30.0% | |
| !! | CAGCTTTTGTTATGAACTTT+TGG | - | chr1_2:57552341-57552360 | None:intergenic | 30.0% |
| CAATGGTAATTTCAAAGACT+CGG | - | chr1_2:57552921-57552940 | None:intergenic | 30.0% | |
| !! | GTCTTTGAAATTACCATTGA+AGG | + | chr1_2:57552922-57552941 | Msa0079610:intron | 30.0% |
| CTTGTCAATTTATCCTTCAA+TGG | - | chr1_2:57552938-57552957 | None:intergenic | 30.0% | |
| CATTGAAGGATAAATTGACA+AGG | + | chr1_2:57552936-57552955 | Msa0079610:intron | 30.0% | |
| TTGCTTATTCTACATGTTTG+AGG | + | chr1_2:57553045-57553064 | Msa0079610:intron | 30.0% | |
| TGCTTATTCTACATGTTTGA+GGG | + | chr1_2:57553046-57553065 | Msa0079610:intron | 30.0% | |
| TTACCTCCTTCTATACTAAT+TGG | + | chr1_2:57553176-57553195 | Msa0079610:intron | 30.0% | |
| TTTCCAATTAGTATAGAAGG+AGG | - | chr1_2:57553182-57553201 | None:intergenic | 30.0% | |
| ACTAATTGGAAATATTCTGC+AGG | + | chr1_2:57553190-57553209 | Msa0079610:intron | 30.0% | |
| CATAGATTTCACAATTGGTA+AGG | - | chr1_2:57553241-57553260 | None:intergenic | 30.0% | |
| ! | AGAAGCATAGATTTCACAAT+TGG | - | chr1_2:57553246-57553265 | None:intergenic | 30.0% |
| !!! | CTATCTTTTTTATCTCCAAC+TGG | - | chr1_2:57553514-57553533 | None:intergenic | 30.0% |
| ACAAGTATTTGAGAAGACAA+AGG | + | chr1_2:57553559-57553578 | Msa0079610:CDS | 30.0% | |
| CAAGTATTTGAGAAGACAAA+GGG | + | chr1_2:57553560-57553579 | Msa0079610:CDS | 30.0% | |
| CTCAATAACAAGTCAAAGAC+GGG | + | chr1_2:57545789-57545808 | Msa0079610:five_prime_UTR | 35.0% | |
| TTAGTATTACCATTAGCAGC+AGG | - | chr1_2:57545887-57545906 | None:intergenic | 35.0% | |
| GAACACAGTAAAGAAGGTAA+TGG | - | chr1_2:57545966-57545985 | None:intergenic | 35.0% | |
| GAAGTAGAACACAGTAAAGA+AGG | - | chr1_2:57545972-57545991 | None:intergenic | 35.0% | |
| TACTACTTGCATTACTATGG+AGG | + | chr1_2:57546017-57546036 | Msa0079610:intron | 35.0% | |
| GTAGAAGCAAAATCAACAAG+AGG | - | chr1_2:57546488-57546507 | None:intergenic | 35.0% | |
| TTAGTCGCTATTACCATAAG+TGG | + | chr1_2:57546640-57546659 | Msa0079610:intron | 35.0% | |
| ! | TATTTTGCACCTACCACTTA+TGG | - | chr1_2:57546656-57546675 | None:intergenic | 35.0% |
| TTACAAATTGGCGATGATTG+TGG | + | chr1_2:57546749-57546768 | Msa0079610:intron | 35.0% | |
| TACAAATTGGCGATGATTGT+GGG | + | chr1_2:57546750-57546769 | Msa0079610:intron | 35.0% | |
| TGAGATCATTGCTATAAGAG+AGG | + | chr1_2:57547002-57547021 | Msa0079610:CDS | 35.0% | |
| ! | GTTAGTGTTTTCTCTTTCTC+AGG | - | chr1_2:57547168-57547187 | None:intergenic | 35.0% |
| TCTTAAATATCACGCCACTT+TGG | + | chr1_2:57547286-57547305 | Msa0079610:intron | 35.0% | |
| ATCATTGTTGGAAACCAAAG+TGG | - | chr1_2:57547312-57547331 | None:intergenic | 35.0% | |
| TATCAGGTTTCCGTTATCAT+CGG | - | chr1_2:57547592-57547611 | None:intergenic | 35.0% | |
| CTCAACCACGATTTCTAATA+TGG | - | chr1_2:57547448-57547467 | None:intergenic | 35.0% | |
| !! | GTATCTGGATTGGTATAATC+TGG | + | chr1_2:57547797-57547816 | Msa0079610:intron | 35.0% |
| GTTTGTACTTTGAATGGTGT+TGG | + | chr1_2:57547949-57547968 | Msa0079610:intron | 35.0% | |
| !! | CTGTTTTGTTGGGTTTTCTT+TGG | + | chr1_2:57548058-57548077 | Msa0079610:intron | 35.0% |
| CAAAAAACAGACTACAGAAG+TGG | - | chr1_2:57548111-57548130 | None:intergenic | 35.0% | |
| !!! | CACTTCTGTAGTCTGTTTTT+TGG | + | chr1_2:57548109-57548128 | Msa0079610:intron | 35.0% |
| !!! | CAGCTTTTGTTTTCCATGTT+TGG | + | chr1_2:57548194-57548213 | Msa0079610:intron | 35.0% |
| ! | TTTCCATGTTTGGAGTTTGT+AGG | + | chr1_2:57548204-57548223 | Msa0079610:intron | 35.0% |
| ! | TTTTGTTCCTTTGCGTTCTT+TGG | + | chr1_2:57548266-57548285 | Msa0079610:intron | 35.0% |
| TCATATACCATCTGCTGTAT+CGG | + | chr1_2:57548380-57548399 | Msa0079610:intron | 35.0% | |
| ! | ATCTCAGTATCAGAGAGTTT+TGG | + | chr1_2:57548413-57548432 | Msa0079610:intron | 35.0% |
| ACTAATTGGAATTTACCTGC+AGG | + | chr1_2:57548560-57548579 | Msa0079610:intron | 35.0% | |
| TATTCACATCAAGCAGAGAA+TGG | + | chr1_2:57548768-57548787 | Msa0079610:intron | 35.0% | |
| ATCAAGCAGAGAATGGTTTA+TGG | + | chr1_2:57548775-57548794 | Msa0079610:intron | 35.0% | |
| ATTTGAGAAGACAAAGGACA+AGG | + | chr1_2:57548918-57548937 | Msa0079610:CDS | 35.0% | |
| ! | GGTATTATATGCTTGACTTG+AGG | + | chr1_2:57549232-57549251 | Msa0079610:intron | 35.0% |
| ! | GCTTAATTTGAGTGAACACA+AGG | - | chr1_2:57549356-57549375 | None:intergenic | 35.0% |
| !! | ATTTGTACCAGAGGTATTTC+TGG | + | chr1_2:57549536-57549555 | Msa0079610:intron | 35.0% |
| ! | GGGAGATGCTTATTCATTTT+TGG | - | chr1_2:57549580-57549599 | None:intergenic | 35.0% |
| ! | TTAAGGATGATGGTGATTTG+AGG | - | chr1_2:57549804-57549823 | None:intergenic | 35.0% |
| !! | TGCTTCACTTTTAAGGATGA+TGG | - | chr1_2:57549814-57549833 | None:intergenic | 35.0% |
| ! | GTATCTGAGGATGATTTTCA+CGG | - | chr1_2:57549837-57549856 | None:intergenic | 35.0% |
| TAAGCTAATGTTGTAGTGGT+GGG | - | chr1_2:57550200-57550219 | None:intergenic | 35.0% | |
| TCACTAAGCTAATGTTGTAG+TGG | - | chr1_2:57550204-57550223 | None:intergenic | 35.0% | |
| GCCAATAAGAAATTGTGTGT+TGG | - | chr1_2:57550561-57550580 | None:intergenic | 35.0% | |
| !! | CTTATTGGCTTAAATCATGG+TGG | + | chr1_2:57550572-57550591 | Msa0079610:intron | 35.0% |
| !!! | GGCATTTTTTGTCCCTAAAA+AGG | + | chr1_2:57550999-57551018 | Msa0079610:intron | 35.0% |
| GTGTATACATGCAATGCAAT+TGG | + | chr1_2:57551219-57551238 | Msa0079610:intron | 35.0% | |
| !!! | TTCATCGTTTTGACTGAGTT+TGG | + | chr1_2:57551268-57551287 | Msa0079610:intron | 35.0% |
| !! | TTTTGACTGAGTTTGGCTAT+GGG | + | chr1_2:57551275-57551294 | Msa0079610:intron | 35.0% |
| ATTTCAAAACACGGGTAACA+GGG | + | chr1_2:57551307-57551326 | Msa0079610:intron | 35.0% | |
| !!! | TTTGGTTATGATTTTGGGGT+GGG | - | chr1_2:57551342-57551361 | None:intergenic | 35.0% |
| TTTCTACATACGTGCATGTT+TGG | - | chr1_2:57551360-57551379 | None:intergenic | 35.0% | |
| AAAATCGGAGAAGTAAGTGT+GGG | - | chr1_2:57551466-57551485 | None:intergenic | 35.0% | |
| AAAAATCGGAGAAGTAAGTG+TGG | - | chr1_2:57551467-57551486 | None:intergenic | 35.0% | |
| GCAATCAATGGTTATTGTGA+TGG | - | chr1_2:57551533-57551552 | None:intergenic | 35.0% | |
| GTTAAAAACAATATGGTGCG+GGG | + | chr1_2:57551624-57551643 | Msa0079610:intron | 35.0% | |
| TACCCAAACTTATTAAGGAC+GGG | + | chr1_2:57551665-57551684 | Msa0079610:intron | 35.0% | |
| CATCTCCATTGAATATGACT+AGG | + | chr1_2:57551705-57551724 | Msa0079610:intron | 35.0% | |
| GATACCCTAGTCATATTCAA+TGG | - | chr1_2:57551713-57551732 | None:intergenic | 35.0% | |
| AAAAGGAAAATGCTAACACG+AGG | + | chr1_2:57551947-57551966 | Msa0079610:intron | 35.0% | |
| CTCAACAAAAAGTCAAAGAC+GGG | + | chr1_2:57552021-57552040 | Msa0079610:intron | 35.0% | |
| ! | GCTGTTGAAGAAGCATATAA+AGG | + | chr1_2:57552357-57552376 | Msa0079610:CDS | 35.0% |
| !! | GCATATAAAGGTGTTGAATG+TGG | + | chr1_2:57552369-57552388 | Msa0079610:CDS | 35.0% |
| AGTTGTAAGCTGTCATAACA+TGG | + | chr1_2:57552437-57552456 | Msa0079610:CDS | 35.0% | |
| TGAGGTTACTGCTATAAGAA+AGG | + | chr1_2:57552491-57552510 | Msa0079610:CDS | 35.0% | |
| ATCTTGATATCACGCTACTT+TGG | + | chr1_2:57552599-57552618 | Msa0079610:intron | 35.0% | |
| CACATGTTAGACAGATAAGT+TGG | + | chr1_2:57552791-57552810 | Msa0079610:intron | 35.0% | |
| GAAGGATAAATTGACAAGGT+TGG | + | chr1_2:57552940-57552959 | Msa0079610:intron | 35.0% | |
| TAAATTGACAAGGTTGGATG+TGG | + | chr1_2:57552946-57552965 | Msa0079610:intron | 35.0% | |
| AAATTGACAAGGTTGGATGT+GGG | + | chr1_2:57552947-57552966 | Msa0079610:intron | 35.0% | |
| !! | TGCTGAATGTTCATTTTGGT+TGG | + | chr1_2:57552977-57552996 | Msa0079610:intron | 35.0% |
| AGTGTAAGGAGAAAATGAGA+GGG | - | chr1_2:57553332-57553351 | None:intergenic | 35.0% | |
| TAGTGTAAGGAGAAAATGAG+AGG | - | chr1_2:57553333-57553352 | None:intergenic | 35.0% | |
| TATTCACATCAAGCAGAGAT+TGG | + | chr1_2:57553397-57553416 | Msa0079610:CDS | 35.0% | |
| !! | ATCAAGCAGAGATTGGTTTA+CGG | + | chr1_2:57553404-57553423 | Msa0079610:CDS | 35.0% |
| TGTGTTGAAGAGTTCATTGG+TGG | - | chr1_2:57546222-57546241 | None:intergenic | 40.0% | |
| ! | AGAGGTTTGGTAAGTTCAAC+CGG | - | chr1_2:57546346-57546365 | None:intergenic | 40.0% |
| ! | AGTACTCTTCTAGAGAGGTT+TGG | - | chr1_2:57546359-57546378 | None:intergenic | 40.0% |
| !! | ACCTCTCTAGAAGAGTACTT+TGG | + | chr1_2:57546360-57546379 | Msa0079610:intron | 40.0% |
| ! | ACCAAAGTACTCTTCTAGAG+AGG | - | chr1_2:57546364-57546383 | None:intergenic | 40.0% |
| AAATGAGTCACTCGTTCTCT+AGG | - | chr1_2:57546553-57546572 | None:intergenic | 40.0% | |
| TCGCTATTACCATAAGTGGT+AGG | + | chr1_2:57546644-57546663 | Msa0079610:intron | 40.0% | |
| GCATATGAAGCTGTTGAATC+TGG | + | chr1_2:57546880-57546899 | Msa0079610:CDS | 40.0% | |
| GAACAATCAGTGCACCATAT+GGG | - | chr1_2:57546915-57546934 | None:intergenic | 40.0% | |
| ! | TCTGACATTTCTTTGAGGGT+TGG | + | chr1_2:57547077-57547096 | Msa0079610:intron | 40.0% |
| ! | CTGACATTTCTTTGAGGGTT+GGG | + | chr1_2:57547078-57547097 | Msa0079610:intron | 40.0% |
| ATCAGGTTTCCGTTATCATC+GGG | - | chr1_2:57547591-57547610 | None:intergenic | 40.0% | |
| !! | GATAACGGAAACCTGATAAC+AGG | + | chr1_2:57547594-57547613 | Msa0079610:intron | 40.0% |
| ATGTGTTAAGAGTCCCACAT+CGG | - | chr1_2:57547753-57547772 | None:intergenic | 40.0% | |
| ! | TCTATGAGGTGTTAACTCAG+TGG | + | chr1_2:57547883-57547902 | Msa0079610:intron | 40.0% |
| !! | TGTTTTGCTGGCTGTTTTGT+TGG | + | chr1_2:57548047-57548066 | Msa0079610:intron | 40.0% |
| !! | GTTTTGCTGGCTGTTTTGTT+GGG | + | chr1_2:57548048-57548067 | Msa0079610:intron | 40.0% |
| CTATAACAACTAGCAAAGCC+TGG | - | chr1_2:57548171-57548190 | None:intergenic | 40.0% | |
| !!! | GGCGTGTTCTGTTTTTTGTT+CGG | + | chr1_2:57548225-57548244 | Msa0079610:intron | 40.0% |
| CAGATGGTATATGATTCGTC+AGG | - | chr1_2:57548374-57548393 | None:intergenic | 40.0% | |
| TGAATAGCACCAAAGCACAT+TGG | - | chr1_2:57548651-57548670 | None:intergenic | 40.0% | |
| GAAGACAAAGGACAAGGTAA+AGG | + | chr1_2:57548924-57548943 | Msa0079610:intron | 40.0% | |
| GAGCAAACATATTAACGACG+AGG | - | chr1_2:57549129-57549148 | None:intergenic | 40.0% | |
| GTCGTTAATATGTTTGCTCG+TGG | + | chr1_2:57549130-57549149 | Msa0079610:intron | 40.0% | |
| ATGTTTGCTCGTGGTAATTG+TGG | + | chr1_2:57549139-57549158 | Msa0079610:intron | 40.0% | |
| TGCATCTTTATTGCAGTCGT+TGG | - | chr1_2:57549178-57549197 | None:intergenic | 40.0% | |
| ! | TAACTTGTGACTGTACAGAG+AGG | - | chr1_2:57549459-57549478 | None:intergenic | 40.0% |
| !! | TTCACGGTGCTTCACTTTTA+AGG | - | chr1_2:57549821-57549840 | None:intergenic | 40.0% |
| GAAGAGGAAGTAAGTATCTG+AGG | - | chr1_2:57549850-57549869 | None:intergenic | 40.0% | |
| CTAAGCTAATGTTGTAGTGG+TGG | - | chr1_2:57550201-57550220 | None:intergenic | 40.0% | |
| ! | ACAAGTTGAGAAACAAGCCT+TGG | + | chr1_2:57550236-57550255 | Msa0079610:intron | 40.0% |
| GTGGCTAAAGATCAATTCCA+AGG | - | chr1_2:57550256-57550275 | None:intergenic | 40.0% | |
| ATGAGTTCGATTCAAAGTGG+TGG | + | chr1_2:57550611-57550630 | Msa0079610:intron | 40.0% | |
| TGAGTTCGATTCAAAGTGGT+GGG | + | chr1_2:57550612-57550631 | Msa0079610:intron | 40.0% | |
| TGCATGTATACACCATGAGA+GGG | - | chr1_2:57551212-57551231 | None:intergenic | 40.0% | |
| TTGCATGTATACACCATGAG+AGG | - | chr1_2:57551213-57551232 | None:intergenic | 40.0% | |
| GCATGACAAACCTAATCTGA+CGG | + | chr1_2:57551242-57551261 | Msa0079610:intron | 40.0% | |
| CGATGAAAATCCGTCAGATT+AGG | - | chr1_2:57551255-57551274 | None:intergenic | 40.0% | |
| !!! | GTTTTGACTGAGTTTGGCTA+TGG | + | chr1_2:57551274-57551293 | Msa0079610:intron | 40.0% |
| !!! | GTTACCCGTGTTTTGAAATC+TGG | - | chr1_2:57551306-57551325 | None:intergenic | 40.0% |
| GATTTCAAAACACGGGTAAC+AGG | + | chr1_2:57551306-57551325 | Msa0079610:intron | 40.0% | |
| !! | GTTTGGTTATGATTTTGGGG+TGG | - | chr1_2:57551343-57551362 | None:intergenic | 40.0% |
| GGAGGAGAAGAGAGAAAAAT+CGG | - | chr1_2:57551481-57551500 | None:intergenic | 40.0% | |
| GGGGATACCCAAACTTATTA+AGG | + | chr1_2:57551660-57551679 | Msa0079610:intron | 40.0% | |
| ACCCAAACTTATTAAGGACG+GGG | + | chr1_2:57551666-57551685 | Msa0079610:intron | 40.0% | |
| TCCCCGTCCTTAATAAGTTT+GGG | - | chr1_2:57551670-57551689 | None:intergenic | 40.0% | |
| ATCCCCGTCCTTAATAAGTT+TGG | - | chr1_2:57551671-57551690 | None:intergenic | 40.0% | |
| AAGCAACAAAGCTCTCTGAT+TGG | + | chr1_2:57551863-57551882 | Msa0079610:intron | 40.0% | |
| GTAATCATTCAAGGAGACGT+AGG | - | chr1_2:57551910-57551929 | None:intergenic | 40.0% | |
| ! | TCAAAGACGGGTTTATTGAG+TGG | + | chr1_2:57552033-57552052 | Msa0079610:intron | 40.0% |
| ATTGTGGAACACACTAAGGA+CGG | - | chr1_2:57552198-57552217 | None:intergenic | 40.0% | |
| CCAAATTGTGGAACACACTA+AGG | - | chr1_2:57552202-57552221 | None:intergenic | 40.0% | |
| CCTTAGTGTGTTCCACAATT+TGG | + | chr1_2:57552199-57552218 | Msa0079610:intron | 40.0% | |
| !! | AAAGGTGTTGAATGTGGTGA+TGG | + | chr1_2:57552375-57552394 | Msa0079610:CDS | 40.0% |
| ! | ATATCACGCTACTTTGGTCT+TGG | + | chr1_2:57552605-57552624 | Msa0079610:intron | 40.0% |
| ! | GTCGGTTTAGTTAGAGACAA+AGG | - | chr1_2:57552656-57552675 | None:intergenic | 40.0% |
| ACCAAATGTGACACAGACAT+GGG | - | chr1_2:57552751-57552770 | None:intergenic | 40.0% | |
| TTAATGGCACCAAAGCACAT+TGG | - | chr1_2:57553281-57553300 | None:intergenic | 40.0% | |
| GTGTAAGGAGAAAATGAGAG+GGG | - | chr1_2:57553331-57553350 | None:intergenic | 40.0% | |
| ! | AGTCAAAGACGGGTTTAGTG+TGG | + | chr1_2:57545799-57545818 | Msa0079610:five_prime_UTR | 45.0% |
| AGCAGCATCATGTTCCATGA+TGG | - | chr1_2:57545858-57545877 | None:intergenic | 45.0% | |
| ! | TGAAGAGTTCATTGGTGGCA+TGG | - | chr1_2:57546217-57546236 | None:intergenic | 45.0% |
| GTGAGTCTCACCACATGATT+TGG | + | chr1_2:57546394-57546413 | Msa0079610:intron | 45.0% | |
| ! | AGTCTCACCACATGATTTGG+TGG | + | chr1_2:57546397-57546416 | Msa0079610:intron | 45.0% |
| ATGGGTACCACCAAATCATG+TGG | - | chr1_2:57546407-57546426 | None:intergenic | 45.0% | |
| AAATTGGCGATGATTGTGGG+AGG | + | chr1_2:57546753-57546772 | Msa0079610:intron | 45.0% | |
| AATTGGCGATGATTGTGGGA+GGG | + | chr1_2:57546754-57546773 | Msa0079610:intron | 45.0% | |
| TCTCATTATACCAGCTGCAG+AGG | + | chr1_2:57546819-57546838 | Msa0079610:intron | 45.0% | |
| GAAGCTGTTGAATCTGGTGA+TGG | + | chr1_2:57546886-57546905 | Msa0079610:CDS | 45.0% | |
| !! | TCTGGTGATGGATACCCATA+TGG | + | chr1_2:57546898-57546917 | Msa0079610:CDS | 45.0% |
| CGAACAATCAGTGCACCATA+TGG | - | chr1_2:57546916-57546935 | None:intergenic | 45.0% | |
| ATGATCTCAGCATGAGCAGT+TGG | - | chr1_2:57546991-57547010 | None:intergenic | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | + | chr1_2:57547469-57547488 | Msa0079610:intron | 45.0% | |
| !! | ACCTCACAAACCGGTTTTGT+GGG | - | chr1_2:57547482-57547501 | None:intergenic | 45.0% |
| ATGTGCAATTCTGAGCGTGA+GGG | - | chr1_2:57547557-57547576 | None:intergenic | 45.0% | |
| ! | AGAATTGCACATCTGAAGCG+TGG | + | chr1_2:57547565-57547584 | Msa0079610:intron | 45.0% |
| AACGGAAACCTGATAACAGG+TGG | + | chr1_2:57547597-57547616 | Msa0079610:intron | 45.0% | |
| GAGCCTCTTCACGATTCTTT+GGG | - | chr1_2:57547623-57547642 | None:intergenic | 45.0% | |
| AGAGCCTCTTCACGATTCTT+TGG | - | chr1_2:57547624-57547643 | None:intergenic | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | + | chr1_2:57547469-57547488 | Msa0079610:intron | 45.0% | |
| TATCTCCGGAAACATTCCCT+CGG | - | chr1_2:57547978-57547997 | None:intergenic | 45.0% | |
| ATGTTTCCGGAGATAGCTGT+TGG | + | chr1_2:57547983-57548002 | Msa0079610:intron | 45.0% | |
| TGTTTCCGGAGATAGCTGTT+GGG | + | chr1_2:57547984-57548003 | Msa0079610:intron | 45.0% | |
| !!! | GTTGGGTTTTCTTTGGAGCA+TGG | + | chr1_2:57548065-57548084 | Msa0079610:intron | 45.0% |
| TAGTCTAGCCTGCTGTGTTA+GGG | + | chr1_2:57548134-57548153 | Msa0079610:intron | 45.0% | |
| ACGCCTACAAACTCCAAACA+TGG | - | chr1_2:57548210-57548229 | None:intergenic | 45.0% | |
| !! | ATTAGGCAGAACTCGGTGTA+AGG | - | chr1_2:57548296-57548315 | None:intergenic | 45.0% |
| TATCTGTCCGATACAGCAGA+TGG | - | chr1_2:57548390-57548409 | None:intergenic | 45.0% | |
| TCTGCTGTATCGGACAGATA+TGG | + | chr1_2:57548390-57548409 | Msa0079610:intron | 45.0% | |
| GTACATTTCACAGCCAGCAA+GGG | - | chr1_2:57548610-57548629 | None:intergenic | 45.0% | |
| TGTACATTTCACAGCCAGCA+AGG | - | chr1_2:57548611-57548630 | None:intergenic | 45.0% | |
| GAACCTTGTCCAATGTGCTT+TGG | + | chr1_2:57548639-57548658 | Msa0079610:intron | 45.0% | |
| AGAATGGTTTATGGAGCCAC+AGG | + | chr1_2:57548784-57548803 | Msa0079610:CDS | 45.0% | |
| GGAGAAGCTGCAAGATCAAT+TGG | + | chr1_2:57548805-57548824 | Msa0079610:CDS | 45.0% | |
| AACGATCGCGTTAACCATCA+TGG | + | chr1_2:57548956-57548975 | Msa0079610:intron | 45.0% | |
| CAGATGTCCAGAAATACCTC+TGG | - | chr1_2:57549546-57549565 | None:intergenic | 45.0% | |
| !! | CAGAGGTATTTCTGGACATC+TGG | + | chr1_2:57549544-57549563 | Msa0079610:intron | 45.0% |
| ! | GGATGATGGTGATTTGAGGA+TGG | - | chr1_2:57549800-57549819 | None:intergenic | 45.0% |
| ! | GTGGTGGGAAGATACTTTGT+CGG | - | chr1_2:57550185-57550204 | None:intergenic | 45.0% |
| GCATGTATACACCATGAGAG+GGG | - | chr1_2:57551211-57551230 | None:intergenic | 45.0% | |
| AAAACAATATGGTGCGGGGA+TGG | + | chr1_2:57551628-57551647 | Msa0079610:intron | 45.0% | |
| AAACAATATGGTGCGGGGAT+GGG | + | chr1_2:57551629-57551648 | Msa0079610:intron | 45.0% | |
| CAACAAAGCTCTCTGATTGG+CGG | + | chr1_2:57551866-57551885 | Msa0079610:intron | 45.0% | |
| GACGTAGGTGACAAACTTTC+AGG | - | chr1_2:57551895-57551914 | None:intergenic | 45.0% | |
| CATCATTCATCACATGGAGC+AGG | + | chr1_2:57552081-57552100 | Msa0079610:intron | 45.0% | |
| GAACAATCACTGCACCAAAC+GGG | - | chr1_2:57552404-57552423 | None:intergenic | 45.0% | |
| CGAACAATCACTGCACCAAA+CGG | - | chr1_2:57552405-57552424 | None:intergenic | 45.0% | |
| CAAATGTCTCTGTGTCGTGT+CGG | - | chr1_2:57552674-57552693 | None:intergenic | 45.0% | |
| CACCAAATGTGACACAGACA+TGG | - | chr1_2:57552752-57552771 | None:intergenic | 45.0% | |
| !! | GTCTGTGTCACATTTGGTGT+CGG | + | chr1_2:57552753-57552772 | Msa0079610:intron | 45.0% |
| AGACAGCAGATAGTAGACGA+TGG | - | chr1_2:57552875-57552894 | None:intergenic | 45.0% | |
| GAACCTTGTCCAATGTGCTT+TGG | + | chr1_2:57548639-57548658 | Msa0079610:intron | 45.0% | |
| ATCACTTCGCTTCTGTGCAT+CGG | - | chr1_2:57553477-57553496 | None:intergenic | 45.0% | |
| GCGAAGTGATTCTTGTCAGA+AGG | + | chr1_2:57553487-57553506 | Msa0079610:CDS | 45.0% | |
| !!! | TAGTTTTTATTTATATAAAA+GGG | - | chr1_2:57551396-57551415 | None:intergenic | 5.0% |
| !!! | TTAGTTTTTATTTATATAAA+AGG | - | chr1_2:57551397-57551416 | None:intergenic | 5.0% |
| ! | GGTGTTGTGATCACTCAACC+TGG | - | chr1_2:57546076-57546095 | None:intergenic | 50.0% |
| !! | AGTCACTCGTTCTCTAGGAC+AGG | - | chr1_2:57546548-57546567 | None:intergenic | 50.0% |
| GGAAACCAAAGTGGCCAAAG+TGG | - | chr1_2:57547303-57547322 | None:intergenic | 50.0% | |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr1_2:57547471-57547490 | None:intergenic | 50.0% |
| !! | CCTCACAAACCGGTTTTGTG+GGG | - | chr1_2:57547481-57547500 | None:intergenic | 50.0% |
| !! | CACCTCACAAACCGGTTTTG+TGG | - | chr1_2:57547483-57547502 | None:intergenic | 50.0% |
| !! | CAAAACCGGTTTGTGAGGTG+AGG | + | chr1_2:57547483-57547502 | Msa0079610:intron | 50.0% |
| GCAATCCTCACCTCACAAAC+CGG | - | chr1_2:57547491-57547510 | None:intergenic | 50.0% | |
| GATGTGCAATTCTGAGCGTG+AGG | - | chr1_2:57547558-57547577 | None:intergenic | 50.0% | |
| TCTTTGGGCCACCTGTTATC+AGG | - | chr1_2:57547608-57547627 | None:intergenic | 50.0% | |
| TGGCCCAAAGAATCGTGAAG+AGG | + | chr1_2:57547617-57547636 | Msa0079610:intron | 50.0% | |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr1_2:57547471-57547490 | None:intergenic | 50.0% |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr1_2:57547685-57547704 | None:intergenic | 50.0% |
| AGGCCAACTTCTAACCGATG+TGG | + | chr1_2:57547736-57547755 | Msa0079610:intron | 50.0% | |
| GGCCAACTTCTAACCGATGT+GGG | + | chr1_2:57547737-57547756 | Msa0079610:intron | 50.0% | |
| ! | GTCCCACATCGGTTAGAAGT+TGG | - | chr1_2:57547742-57547761 | None:intergenic | 50.0% |
| ! | TTGAATGGTGTTGGAACCCG+AGG | + | chr1_2:57547958-57547977 | Msa0079610:intron | 50.0% |
| ! | TGAATGGTGTTGGAACCCGA+GGG | + | chr1_2:57547959-57547978 | Msa0079610:intron | 50.0% |
| ATCTCCGGAAACATTCCCTC+GGG | - | chr1_2:57547977-57547996 | None:intergenic | 50.0% | |
| GTTTCCGGAGATAGCTGTTG+GGG | + | chr1_2:57547985-57548004 | Msa0079610:intron | 50.0% | |
| GTAGTCTAGCCTGCTGTGTT+AGG | + | chr1_2:57548133-57548152 | Msa0079610:intron | 50.0% | |
| AGGCACACCAAAGAACGCAA+AGG | - | chr1_2:57548276-57548295 | None:intergenic | 50.0% | |
| ! | CCAGCTTTTTACAAGCCTGC+AGG | - | chr1_2:57548578-57548597 | None:intergenic | 50.0% |
| CCTGCAGGCTTGTAAAAAGC+TGG | + | chr1_2:57548575-57548594 | Msa0079610:intron | 50.0% | |
| CTGGATAACGTTTCCCTTGC+TGG | + | chr1_2:57548594-57548613 | Msa0079610:intron | 50.0% | |
| GCACCAAAGCACATTGGACA+AGG | - | chr1_2:57548645-57548664 | None:intergenic | 50.0% | |
| TGATCTTGCAGCTTCTCCTG+TGG | - | chr1_2:57548803-57548822 | None:intergenic | 50.0% | |
| CGTGGTAATTGTGGACTCCT+TGG | + | chr1_2:57549148-57549167 | Msa0079610:intron | 50.0% | |
| !! | TTGCAGTCGTTGGTTCTCCA+AGG | - | chr1_2:57549168-57549187 | None:intergenic | 50.0% |
| ACCATGAGAGGGGAATAGCT+AGG | - | chr1_2:57551201-57551220 | None:intergenic | 50.0% | |
| TCCTCCACATCTCAATCGCT+CGG | + | chr1_2:57551495-57551514 | Msa0079610:intron | 50.0% | |
| AACAATATGGTGCGGGGATG+GGG | + | chr1_2:57551630-57551649 | Msa0079610:intron | 50.0% | |
| GTAACCTCAGCATGAGCAGT+GGG | - | chr1_2:57552480-57552499 | None:intergenic | 50.0% | |
| AGTAACCTCAGCATGAGCAG+TGG | - | chr1_2:57552481-57552500 | None:intergenic | 50.0% | |
| GCCCATGTCTGTGTCACATT+TGG | + | chr1_2:57552747-57552766 | Msa0079610:intron | 50.0% | |
| TCTGCAGGCTTGTCAAAAGC+TGG | + | chr1_2:57553205-57553224 | Msa0079610:intron | 50.0% | |
| GCACCAAAGCACATTGGACA+AGG | - | chr1_2:57548645-57548664 | None:intergenic | 50.0% | |
| TGCTACTGCAGCTTCTGCTT+TGG | - | chr1_2:57553432-57553451 | None:intergenic | 50.0% | |
| GCAGAAGCTGCAGTAGCAAT+TGG | + | chr1_2:57553434-57553453 | Msa0079610:CDS | 50.0% | |
| TTCTTGTCAGAAGGCCCAGT+TGG | + | chr1_2:57553496-57553515 | Msa0079610:CDS | 50.0% | |
| GCTGCTACTCCTGCTGCTAA+TGG | + | chr1_2:57545875-57545894 | Msa0079610:CDS | 55.0% | |
| TGGTCTCTATCCTCTGCAGC+TGG | - | chr1_2:57546832-57546851 | None:intergenic | 55.0% | |
| ! | TCACGCCACTTTGGCCACTT+TGG | + | chr1_2:57547295-57547314 | Msa0079610:intron | 55.0% |
| !! | CCCCACAAAACCGGTTTGTG+AGG | + | chr1_2:57547478-57547497 | Msa0079610:intron | 55.0% |
| GAAGCGTGGCCCGATGATAA+CGG | + | chr1_2:57547579-57547598 | Msa0079610:intron | 55.0% | |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr1_2:57547684-57547703 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | chr1_2:57547686-57547705 | None:intergenic | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr1_2:57547686-57547705 | Msa0079610:intron | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | - | chr1_2:57547694-57547713 | None:intergenic | 55.0% | |
| GGAACCCGAGGGAATGTTTC+CGG | + | chr1_2:57547970-57547989 | Msa0079610:intron | 55.0% | |
| ACCACATGCCCTAACACAGC+AGG | - | chr1_2:57548145-57548164 | None:intergenic | 55.0% | |
| GTTAGGGCATGTGGTATGCC+AGG | + | chr1_2:57548150-57548169 | Msa0079610:intron | 55.0% | |
| GCCTAGCTATTCCCCTCTCA+TGG | + | chr1_2:57551197-57551216 | Msa0079610:intron | 55.0% | |
| ACCGAGCGATTGAGATGTGG+AGG | - | chr1_2:57551499-57551518 | None:intergenic | 55.0% | |
| GAGACCGAGCGATTGAGATG+TGG | - | chr1_2:57551502-57551521 | None:intergenic | 55.0% | |
| AGGCATAGCAATGGGACGAG+TGG | - | chr1_2:57551782-57551801 | None:intergenic | 55.0% | |
| AGATCCCACTGCTCATGCTG+AGG | + | chr1_2:57552473-57552492 | Msa0079610:CDS | 55.0% | |
| TGGCGATGATTGTGGGAGGG+AGG | + | chr1_2:57546757-57546776 | Msa0079610:intron | 60.0% | |
| GGCGATGATTGTGGGAGGGA+GGG | + | chr1_2:57546758-57546777 | Msa0079610:intron | 60.0% | |
| ! | AGCGTGAGGGCGTGAGAAGT+TGG | - | chr1_2:57547544-57547563 | None:intergenic | 60.0% |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | chr1_2:57547681-57547700 | Msa0079610:intron | 60.0% |
| TGCGCCCCAACAGCTATCTC+CGG | - | chr1_2:57547992-57548011 | None:intergenic | 60.0% | |
| GCCTGCTGTGTTAGGGCATG+TGG | + | chr1_2:57548141-57548160 | Msa0079610:intron | 60.0% | |
| TATGGTGCGGGGATGGGGTT+AGG | + | chr1_2:57551635-57551654 | Msa0079610:intron | 60.0% | |
| GCTGCTGCTGCTGCTGCAAA+CGG | + | chr1_2:57552103-57552122 | Msa0079610:CDS | 60.0% | |
| !! | TGTGGTGATGGACGCCCGTT+TGG | + | chr1_2:57552387-57552406 | Msa0079610:CDS | 60.0% |
| GGTGCGGGGATGGGGTTAGG+CGG | + | chr1_2:57551638-57551657 | Msa0079610:intron | 70.0% | |
| GTGCGGGGATGGGGTTAGGC+GGG | + | chr1_2:57551639-57551658 | Msa0079610:intron | 70.0% | |
| TGCGGGGATGGGGTTAGGCG+GGG | + | chr1_2:57551640-57551659 | Msa0079610:intron | 70.0% | |
| GCGGGGATGGGGTTAGGCGG+GGG | + | chr1_2:57551641-57551660 | Msa0079610:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 57545740 | 57553598 | 57545740 | ID=Msa0079610;Name=Msa0079610 |
| chr1_2 | mRNA | 57545740 | 57553598 | 57545740 | ID=Msa0079610-mRNA-1;Parent=Msa0079610;Name=Msa0079610-mRNA-1;_AED=0.19;_eAED=0.19;_QI=120|0.6|0.5|1|0.6|0.5|6|0|325 |
| chr1_2 | exon | 57545740 | 57545896 | 57545740 | ID=Msa0079610-mRNA-1:exon:18223;Parent=Msa0079610-mRNA-1 |
| chr1_2 | exon | 57546833 | 57547023 | 57546833 | ID=Msa0079610-mRNA-1:exon:18224;Parent=Msa0079610-mRNA-1 |
| chr1_2 | exon | 57548784 | 57548939 | 57548784 | ID=Msa0079610-mRNA-1:exon:18225;Parent=Msa0079610-mRNA-1 |
| chr1_2 | exon | 57552103 | 57552124 | 57552103 | ID=Msa0079610-mRNA-1:exon:18226;Parent=Msa0079610-mRNA-1 |
| chr1_2 | exon | 57552331 | 57552512 | 57552331 | ID=Msa0079610-mRNA-1:exon:18227;Parent=Msa0079610-mRNA-1 |
| chr1_2 | exon | 57553212 | 57553598 | 57553212 | ID=Msa0079610-mRNA-1:exon:18228;Parent=Msa0079610-mRNA-1 |
| chr1_2 | five_prime_UTR | 57545740 | 57545859 | 57545740 | ID=Msa0079610-mRNA-1:five_prime_utr;Parent=Msa0079610-mRNA-1 |
| chr1_2 | CDS | 57545860 | 57545896 | 57545860 | ID=Msa0079610-mRNA-1:cds;Parent=Msa0079610-mRNA-1 |
| chr1_2 | CDS | 57546833 | 57547023 | 57546833 | ID=Msa0079610-mRNA-1:cds;Parent=Msa0079610-mRNA-1 |
| chr1_2 | CDS | 57548784 | 57548939 | 57548784 | ID=Msa0079610-mRNA-1:cds;Parent=Msa0079610-mRNA-1 |
| chr1_2 | CDS | 57552103 | 57552124 | 57552103 | ID=Msa0079610-mRNA-1:cds;Parent=Msa0079610-mRNA-1 |
| chr1_2 | CDS | 57552331 | 57552512 | 57552331 | ID=Msa0079610-mRNA-1:cds;Parent=Msa0079610-mRNA-1 |
| chr1_2 | CDS | 57553212 | 57553598 | 57553212 | ID=Msa0079610-mRNA-1:cds;Parent=Msa0079610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
