AlfalfaGEDB | Msa0079610

M. sativa cultivar zhongmu-4 / Msa0079610

KEGG: -
GO: GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360
PFAM: PF00383.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079610	XP_039685194.1	79.032	62	13	0	15	76	13	74	6.41e-25	110
Msa0079610	XP_039685194.1	92.632	190	14	0	136	325	14	203	3.20e-122	359

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079610	sp\|Q94BU8\|GSDA_ARATH	61.658	193	42	1	133	325	25	185	2.84e-76	234
Msa0079610	sp\|Q94BU8\|GSDA_ARATH	42.405	158	50	3	12	128	24	181	1.03e-30	117

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079610	A0A103YG48	49.858	351	95	6	15	322	87	399	3.88e-104	320

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037180	Msa0079610	0.808432	3.106442e-50	-8.615850e-47
Msa0079610	Msa0660150	0.800957	1.129338e-48	-8.615850e-47
Msa0079610	Msa0745140	0.801647	8.158483e-49	-8.615850e-47
Msa0079610	Msa0776640	0.801634	8.207322e-49	-8.615850e-47
Msa0079610	Msa0805390	0.802776	4.777357e-49	-8.615850e-47
Msa0079610	Msa0825920	0.803560	3.288523e-49	-8.615850e-47
Msa0079610	Msa1119430	0.804119	2.517190e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079610	MtrunA17_Chr1g0191001	80.808	198	5	2	129	325	4	169	2.26e-105	305
Msa0079610	MtrunA17_Chr1g0191001	52.903	155	32	3	15	128	11	165	7.37e-43	145
Msa0079610	MtrunA17_Chr2g0302351	58.796	216	48	2	119	325	2	185	2.05e-79	239
Msa0079610	MtrunA17_Chr2g0302351	47.468	158	42	3	12	128	24	181	1.80e-35	127
Msa0079610	MtrunA17_Chr4g0069501	62.694	193	40	1	133	325	26	186	5.85e-78	236
Msa0079610	MtrunA17_Chr4g0069501	45.860	157	44	3	13	128	26	182	4.59e-34	123
Msa0079610	MtrunA17_Chr1g0190991	71.519	158	10	1	15	137	25	182	1.24e-68	212
Msa0079610	MtrunA17_Chr1g0190991	55.376	186	45	3	136	321	26	173	1.88e-62	196
Msa0079610	MtrunA17_Chr1g0190971	55.385	195	48	3	126	319	3	159	8.33e-64	199
Msa0079610	MtrunA17_Chr1g0190971	66.049	162	16	3	1	126	1	159	4.15e-61	192

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079610	AT5G28050.1	61.658	193	42	1	133	325	25	185	2.88e-77	234
Msa0079610	AT5G28050.1	42.405	158	50	3	12	128	24	181	1.05e-31	117
Msa0079610	AT5G28050.2	61.658	193	42	1	133	325	44	204	6.30e-77	234
Msa0079610	AT5G28050.2	42.405	158	50	3	12	128	43	200	1.65e-31	117
Msa0079610	AT5G28050.3	61.658	193	42	1	133	325	130	290	6.72e-77	237
Msa0079610	AT5G28050.3	42.675	157	49	3	13	128	130	286	5.17e-31	118
Msa0079610	AT3G05300.1	48.299	147	41	2	178	324	1	112	4.72e-37	129
Msa0079610	AT1G68720.1	36.735	98	57	2	138	235	1110	1202	1.58e-11	65.9

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Find 55 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGTTGAATGTGGTGA+TGG	0.595770	1_2:+57552375	Msa0079610:CDS
ACAAGTATTTGAGAAGACAA+AGG	0.601176	1_2:+57553559	Msa0079610:CDS
AGAAGCATAGATTTCACAAT+TGG	0.397370	1_2:-57553243	None:intergenic
AGAAGTATTTGAGAAGACAA+AGG	0.606818	1_2:+57548912	Msa0079610:CDS
AGAATGGTTTATGGAGCCAC+AGG	0.555557	1_2:+57548784	Msa0079610:CDS
AGATCCCACTGCTCATGCTG+AGG	0.645138	1_2:+57552473	Msa0079610:CDS
AGCAGCATCATGTTCCATGA+TGG	0.588116	1_2:-57545855	None:intergenic
AGTAACCTCAGCATGAGCAG+TGG	0.566858	1_2:-57552478	None:intergenic
AGTCAAAGACGGGTTTAGTG+TGG	0.620279	1_2:+57545799	Msa0079610:five_prime_UTR
AGTGTAAGGAGAAAATGAGA+GGG	0.615830	1_2:-57553329	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCAATAACAAGTCAAAGA+CGG	+	chr1_2:57545788-57545807	Msa0079610:five_prime_UTR	30.0%
TCATTCTTTCTATACCATCA+TGG	+	chr1_2:57545841-57545860	Msa0079610:exon	30.0%
AACTACTACTTGCATTACTA+TGG	+	chr1_2:57546014-57546033	Msa0079610:intron	30.0%
AAATGTGTTGAAGAGTTCAT+TGG	-	chr1_2:57546225-57546244	None:intergenic	30.0%
GTTAAAAGAGTTTGATGTCT+TGG	-	chr1_2:57546318-57546337	None:intergenic	30.0%
GACTCATTTAACTATTTCAC+AGG	+	chr1_2:57546564-57546583	Msa0079610:intron	30.0%
TAATAGCGACTAAACTACTT+TGG	-	chr1_2:57546633-57546652	None:intergenic	30.0%
TGTAATCTGACATTTCTTTG+AGG	+	chr1_2:57547072-57547091	Msa0079610:intron	30.0%
GTAATCTGACATTTCTTTGA+GGG	+	chr1_2:57547073-57547092	Msa0079610:intron	30.0%
CTAAGTGATTAAAAGAGTTG+AGG	+	chr1_2:57547119-57547138	Msa0079610:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	57545740	57553598	57545740	ID=Msa0079610;Name=Msa0079610
chr1_2	mRNA	57545740	57553598	57545740	ID=Msa0079610-mRNA-1;Parent=Msa0079610;Name=Msa0079610-mRNA-1;_AED=0.19;_eAED=0.19;_QI=120\|0.6\|0.5\|1\|0.6\|0.5\|6\|0\|325
chr1_2	exon	57545740	57545896	57545740	ID=Msa0079610-mRNA-1:exon:18223;Parent=Msa0079610-mRNA-1
chr1_2	exon	57546833	57547023	57546833	ID=Msa0079610-mRNA-1:exon:18224;Parent=Msa0079610-mRNA-1
chr1_2	exon	57548784	57548939	57548784	ID=Msa0079610-mRNA-1:exon:18225;Parent=Msa0079610-mRNA-1
chr1_2	exon	57552103	57552124	57552103	ID=Msa0079610-mRNA-1:exon:18226;Parent=Msa0079610-mRNA-1
chr1_2	exon	57552331	57552512	57552331	ID=Msa0079610-mRNA-1:exon:18227;Parent=Msa0079610-mRNA-1
chr1_2	exon	57553212	57553598	57553212	ID=Msa0079610-mRNA-1:exon:18228;Parent=Msa0079610-mRNA-1
chr1_2	five_prime_UTR	57545740	57545859	57545740	ID=Msa0079610-mRNA-1:five_prime_utr;Parent=Msa0079610-mRNA-1
chr1_2	CDS	57545860	57545896	57545860	ID=Msa0079610-mRNA-1:cds;Parent=Msa0079610-mRNA-1
chr1_2	CDS	57546833	57547023	57546833	ID=Msa0079610-mRNA-1:cds;Parent=Msa0079610-mRNA-1
chr1_2	CDS	57548784	57548939	57548784	ID=Msa0079610-mRNA-1:cds;Parent=Msa0079610-mRNA-1
chr1_2	CDS	57552103	57552124	57552103	ID=Msa0079610-mRNA-1:cds;Parent=Msa0079610-mRNA-1
chr1_2	CDS	57552331	57552512	57552331	ID=Msa0079610-mRNA-1:cds;Parent=Msa0079610-mRNA-1
chr1_2	CDS	57553212	57553598	57553212	ID=Msa0079610-mRNA-1:cds;Parent=Msa0079610-mRNA-1

Gene Sequence

>Msa0079610

ATGGAACATGATGCTGCTGCTACTCCTGCTGCTAATGCTGCAGAGGATAGAGACCAAAAGTTCATAATAAAATCTGTTGAAGAAGCATATGAAGCTGTTGAATCTGGTGATGGATACCCATATGGTGCACTGATTGTTCGAAATGATGAAGTTATTGTAAGCTGTCATAACATGTTTTTAAGAAACAAAGAGCCAACTGCTCATGCTGAGATCATTGCTATAAGAGAGAGAATGGTTTATGGAGCCACAGGAGAAGCTGCAAGATCAATTGGATTTAGTAATTATATTGGCAAGGGCACTGATTTTCATAAGTTCGAGATAAAAAAGATAGATGGTATTGCTGCTGAAATTGCAGAAGAAGTATTTGAGAAGACAAAGGACAAGGCTGCTGCTGCTGCTGCAAACGATAGAGACCAAAAGTTCATAACAAAAGCTGTTGAAGAAGCATATAAAGGTGTTGAATGTGGTGATGGACGCCCGTTTGGTGCAGTGATTGTTCGAAATGACGAAGTAGTTGTAAGCTGTCATAACATGGTTTTAAGAAACAAAGATCCCACTGCTCATGCTGAGGTTACTGCTATAAGAAAGGCTTGTCAAAAGCTGGATCAAATTTACCTTACCAATTGTGAAATCTATGCTTCTTGTGAACCTTGTCCAATGTGCTTTGGTGCCATTAATCTTTCAAAAATTAAGGCAAGAAGAAACCCCTCTCATTTTCTCCTTACACTATTCATTTATGTAACCACTGTTAAATTGATCACATATTTGTCGTATATTCACATCAAGCAGAGATTGGTTTACGGAGCCAAAGCAGAAGCTGCAGTAGCAATTGGATTTGACAGTTTTATCGCCGATGCACAGAAGCGAAGTGATTCTTGTCAGAAGGCCCAGTTGGAGATAAAAAAGATAGATGGTAATGCTGCTGCAATTGCAGAACAAGTATTTGAGAAGACAAAGGGAAAGTACATTCTTTAT

Protein sequence

>Msa0079610

MEHDAAATPAANAAEDRDQKFIIKSVEEAYEAVESGDGYPYGALIVRNDEVIVSCHNMFLRNKEPTAHAEIIAIRERMVYGATGEAARSIGFSNYIGKGTDFHKFEIKKIDGIAAEIAEEVFEKTKDKAAAAAANDRDQKFITKAVEEAYKGVECGDGRPFGAVIVRNDEVVVSCHNMVLRNKDPTAHAEVTAIRKACQKLDQIYLTNCEIYASCEPCPMCFGAINLSKIKARRNPSHFLLTLFIYVTTVKLITYLSYIHIKQRLVYGAKAEAAVAIGFDSFIADAQKRSDSCQKAQLEIKKIDGNAAAIAEQVFEKTKGKYILY