AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079810 MtrunA17_Chr1g0191411 97.917 288 5 1 1 287 1 288 0.0 584
Msa0079810 MtrunA17_Chr7g0273211 70.877 285 80 1 2 286 34 315 5.91e-156 438
Msa0079810 MtrunA17_Chr5g0397331 52.060 267 124 3 5 269 82 346 1.46e-93 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079810 AT3G05170.1 72.222 270 75 0 3 272 7 276 3.43e-150 423
Msa0079810 AT1G08940.1 68.953 277 80 3 3 275 7 281 6.61e-142 401

Find 109 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAGTTTCACCTTCATTT+TGG 0.169991 1_2:-57849516 None:intergenic
TTTCGGAAACTGCGAGTTTC+GGG 0.182047 1_2:+57849282 Msa0079810:CDS
CGCATTAGGATTATCCTCTT+TGG 0.271933 1_2:-57848615 None:intergenic
GACGCCGATCACGCGCTTCT+TGG 0.272814 1_2:-57848862 None:intergenic
TTTGAGCATCTAAACAATTT+CGG 0.293790 1_2:+57849265 Msa0079810:CDS
TAGAATACAGTTTGGATGTA+TGG 0.300442 1_2:-57848444 None:intergenic
AATCTCCGCCGTCTCGTTTC+CGG 0.313382 1_2:+57848747 Msa0079810:CDS
CTTGAAATTAGAATTCAAAA+TGG 0.319343 1_2:+57848584 Msa0079810:exon
ACTGAAATGATAGTTGTTAA+AGG 0.321803 1_2:+57849532 Msa0079810:CDS
ATTTCGGAAACTGCGAGTTT+CGG 0.331893 1_2:+57849281 Msa0079810:CDS
CGCCGTCTCGTTTCCGGCCA+AGG 0.340582 1_2:+57848753 Msa0079810:CDS
GAGATTGGCGCCGGCGTGGC+GGG 0.342893 1_2:-57848730 None:intergenic
AAGAAACTCGTGAACGGTTT+GGG 0.344466 1_2:+57848955 Msa0079810:CDS
GTTGTTAAAGGGGAATTTAT+AGG 0.348698 1_2:+57849544 Msa0079810:CDS
GTGACTCGCCGTGACGCATT+AGG 0.355053 1_2:-57848629 None:intergenic
AGAATCGCGCGTACGTGAAC+AGG 0.355351 1_2:+57848890 Msa0079810:CDS
GATAACCTTTGATTGATTGT+AGG 0.356988 1_2:+57849583 Msa0079810:three_prime_UTR
CTGAAATGATAGTTGTTAAA+GGG 0.362442 1_2:+57849533 Msa0079810:CDS
TGTGGACCGGGTGCGGGCGT+AGG 0.374827 1_2:-57848814 None:intergenic
AAGGTTATCTTATCATCAAT+TGG 0.379933 1_2:-57849569 None:intergenic
TCGGCGGCGGATTCACCTTC+AGG 0.382270 1_2:-57848996 None:intergenic
CAATGTCCTTGGTATCTTGA+TGG 0.384985 1_2:+57849445 Msa0079810:CDS
AAAGAAACTCGTGAACGGTT+TGG 0.387033 1_2:+57848954 Msa0079810:CDS
GCCAGTCAGGGGAGCAGCCT+TGG 0.397485 1_2:-57848770 None:intergenic
ACCAGATTTAAATCGTTAGT+TGG 0.398319 1_2:-57849175 None:intergenic
GCCAAGGCTGCTCCCCTGAC+TGG 0.403767 1_2:+57848769 Msa0079810:CDS
ACTGTTTGTAGAATACAGTT+TGG 0.406791 1_2:-57848452 None:intergenic
CACGGAGTGTGGACCGGGTG+CGG 0.410340 1_2:-57848821 None:intergenic
AATCTAATTTCCAAAATTTG+TGG 0.411855 1_2:-57849717 None:intergenic
TATGTAATAATCATAATTTA+CGG 0.419568 1_2:+57849647 Msa0079810:three_prime_UTR
CGGAAGAAGAGATGCTTGAA+TGG 0.421203 1_2:+57849353 Msa0079810:CDS
TAGAAGTAGAGACGCCAGTC+AGG 0.422292 1_2:-57848783 None:intergenic
CTAAACGATCCGATTGAGAT+TGG 0.432151 1_2:-57849762 None:intergenic
GTGGACCGGGTGCGGGCGTA+GGG 0.432905 1_2:-57848813 None:intergenic
TGAATAGTATTATCTTAATC+CGG 0.434849 1_2:-57848339 None:intergenic
TCTTCATACGCTCTTGAACT+TGG 0.436566 1_2:-57848926 None:intergenic
GTCAGGGGAGCAGCCTTGGC+CGG 0.437420 1_2:-57848766 None:intergenic
TCCAACTAACGATTTAAATC+TGG 0.438023 1_2:+57849174 Msa0079810:CDS
CGCGTACGTGAACAGGATTT+CGG 0.438914 1_2:+57848897 Msa0079810:CDS
GGAAACGAGACGGCGGAGAT+TGG 0.440959 1_2:-57848745 None:intergenic
GGAAGAAGAGATGCTTGAAT+GGG 0.451438 1_2:+57849354 Msa0079810:CDS
ACGGAGTGTGGACCGGGTGC+GGG 0.458435 1_2:-57848820 None:intergenic
GCTTGAATGGGGAATGTCTC+CGG 0.465250 1_2:+57849366 Msa0079810:CDS
ATATGATTGCTGATCAGAAA+TGG 0.466739 1_2:+57849389 Msa0079810:CDS
GGAGATTGGCGCCGGCGTGG+CGG 0.473230 1_2:-57848731 None:intergenic
TTGAAATTAGAATTCAAAAT+GGG 0.477033 1_2:+57848585 Msa0079810:exon
TTCTGATCAGCAATCATATC+CGG 0.479044 1_2:-57849385 None:intergenic
AACTTCACGGAGTGTGGACC+GGG 0.484362 1_2:-57848826 None:intergenic
GTTAACTGAATGCTGTGGTC+TGG 0.485756 1_2:-57848687 None:intergenic
AAACTGCGAGTTTCGGGTGA+TGG 0.492323 1_2:+57849288 Msa0079810:CDS
GTGGCGGGCTTGTGCGATGC+CGG 0.494843 1_2:-57848715 None:intergenic
AGCATTCAGTTAACTCCATC+CGG 0.508794 1_2:+57848696 Msa0079810:CDS
AGAATACAGTTTGGATGTAT+GGG 0.510305 1_2:-57848443 None:intergenic
CGGGTGATGGAGCAAGGGAG+TGG 0.510953 1_2:+57849301 Msa0079810:CDS
CAGTTTGGCGATTAATCATA+CGG 0.511425 1_2:+57849333 Msa0079810:CDS
ATCGCACAAGCCCGCCACGC+CGG 0.513724 1_2:+57848720 Msa0079810:CDS
TTCTCCAAGAAGCGCGTGAT+CGG 0.514170 1_2:+57848858 Msa0079810:CDS
TCTCTCCCTACGCCCGCACC+CGG 0.515505 1_2:+57848808 Msa0079810:CDS
CAACTTCACGGAGTGTGGAC+CGG 0.516011 1_2:-57848827 None:intergenic
CGGGCTTGTGCGATGCCGGA+TGG 0.517406 1_2:-57848711 None:intergenic
GGCGGAGATTGGCGCCGGCG+TGG 0.518194 1_2:-57848734 None:intergenic
TAAGATAATACTATTCAAGA+TGG 0.520930 1_2:+57848345 Msa0079810:five_prime_UTR
CCAATTTCGATCAGATTACT+CGG 0.523280 1_2:-57849836 None:intergenic
TGTGACCGTCCAATCTCAAT+CGG 0.525925 1_2:+57849753 Msa0079810:three_prime_UTR
GATTACTCGGATCTCAAACT+TGG 0.527329 1_2:-57849823 None:intergenic
AAAACCTATAAATCGAGTAA+AGG 0.531486 1_2:+57848483 Msa0079810:five_prime_UTR
GATGAAGCAATCCAAAATGA+AGG 0.532371 1_2:+57849505 Msa0079810:CDS
TGAAATGATAGTTGTTAAAG+GGG 0.536486 1_2:+57849534 Msa0079810:CDS
AATGCTGTGGTCTGGTGTGG+TGG 0.541324 1_2:-57848679 None:intergenic
GAGTTTCGGGTGATGGAGCA+AGG 0.542115 1_2:+57849295 Msa0079810:CDS
GAGTGGTGGAGAATACAGTT+TGG 0.544566 1_2:+57849318 Msa0079810:CDS
AGAAGTAGAGACGCCAGTCA+GGG 0.558329 1_2:-57848782 None:intergenic
GTGATGGAGCAAGGGAGTGG+TGG 0.558690 1_2:+57849304 Msa0079810:CDS
AAGCCATTCTATACTTGTGT+TGG 0.563262 1_2:+57849612 Msa0079810:three_prime_UTR
TCTACCAACTTCACGGAGTG+TGG 0.563838 1_2:-57848832 None:intergenic
TGGTGTATGCTGACGTATCA+AGG 0.563943 1_2:-57848659 None:intergenic
GAGACGGCGGAGATTGGCGC+CGG 0.564282 1_2:-57848739 None:intergenic
GATTGGACGGTCACAATGCA+TGG 0.564493 1_2:-57849745 None:intergenic
CTGAATGCTGTGGTCTGGTG+TGG 0.565165 1_2:-57848682 None:intergenic
TGATCATTCCAAGCACCTCT+AGG 0.566827 1_2:-57849424 None:intergenic
ATACCAACACAAGTATAGAA+TGG 0.569770 1_2:-57849615 None:intergenic
CAGATGCGCCTAGAGGTGCT+TGG 0.570632 1_2:+57849416 Msa0079810:CDS
CTTGGAATGATCAATGTCCT+TGG 0.578748 1_2:+57849434 Msa0079810:CDS
TCTTGATGAAGTGGTTCAAG+TGG 0.585341 1_2:+57849230 Msa0079810:CDS
CGGTCCACACTCCGTGAAGT+TGG 0.587452 1_2:+57848828 Msa0079810:CDS
ATGCGTCACGGCGAGTCACA+AGG 0.594731 1_2:+57848633 Msa0079810:CDS
AGAAAGATCTACCAACTTCA+CGG 0.598186 1_2:-57848839 None:intergenic
AGCCTTGGCCGGAAACGAGA+CGG 0.598321 1_2:-57848755 None:intergenic
GTAAACCTACAATCAATCAA+AGG 0.599275 1_2:-57849588 None:intergenic
GAAGTAGAGACGCCAGTCAG+GGG 0.613104 1_2:-57848781 None:intergenic
GCGATCGAAAACATCGGCGG+CGG 0.622403 1_2:-57849009 None:intergenic
TTGTTAAAGAAACTCGTGAA+CGG 0.625373 1_2:+57848949 Msa0079810:CDS
ACGATCCGATTGAGATTGGA+CGG 0.629679 1_2:-57849758 None:intergenic
ACACATTACAGCTGCCGCCG+CGG 0.637118 1_2:+57848390 Msa0079810:five_prime_UTR
AAATGGGTGTGCTTCCAAAG+AGG 0.650418 1_2:+57848601 Msa0079810:exon
AGTTTCGGGTGATGGAGCAA+GGG 0.652564 1_2:+57849296 Msa0079810:CDS
AATTGATTCTGGTCAAGCCG+CGG 0.657101 1_2:-57848407 None:intergenic
TGGCGTGCAGATGCGCCTAG+AGG 0.658589 1_2:+57849409 Msa0079810:CDS
GAAGAAGAGATGCTTGAATG+GGG 0.659893 1_2:+57849355 Msa0079810:CDS
TGATTCTGGTCAAGCCGCGG+CGG 0.664767 1_2:-57848404 None:intergenic
AGGATAATCCTAATGCGTCA+CGG 0.674661 1_2:+57848621 Msa0079810:CDS
CTTGGCCGGAAACGAGACGG+CGG 0.676638 1_2:-57848752 None:intergenic
GATGAAGTGGTTCAAGTGGA+CGG 0.691694 1_2:+57849234 Msa0079810:CDS
GCAGCTGTAATGTGTAAGCG+AGG 0.691916 1_2:-57848382 None:intergenic
AGAAATGCGATCGAAAACAT+CGG 0.698994 1_2:-57849015 None:intergenic
ATGGAGTTAACTGAATGCTG+TGG 0.708629 1_2:-57848692 None:intergenic
AATCTGGTGATAGTATCACA+CGG 0.716063 1_2:+57849190 Msa0079810:CDS
GAAGTGGTTCAAGTGGACGG+TGG 0.719720 1_2:+57849237 Msa0079810:CDS
AATGCGATCGAAAACATCGG+CGG 0.731619 1_2:-57849012 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTAATAATCATAATTTA+CGG + chr1_2:57849647-57849666 Msa0079810:three_prime_UTR 10.0%
!! TATGTAATAATCATAATTTA+CGG + chr1_2:57849647-57849666 Msa0079810:three_prime_UTR 10.0%
!! TTGAAATTAGAATTCAAAAT+GGG + chr1_2:57848585-57848604 Msa0079810:exon 15.0%
!!! TTTGATTTTCTTCAAAAATT+AGG + chr1_2:57849798-57849817 Msa0079810:three_prime_UTR 15.0%
!! TTGAAATTAGAATTCAAAAT+GGG + chr1_2:57848585-57848604 Msa0079810:exon 15.0%
!!! TTTGATTTTCTTCAAAAATT+AGG + chr1_2:57849798-57849817 Msa0079810:three_prime_UTR 15.0%
!! TGAATAGTATTATCTTAATC+CGG - chr1_2:57848342-57848361 None:intergenic 20.0%
!! TAAGATAATACTATTCAAGA+TGG + chr1_2:57848345-57848364 Msa0079810:five_prime_UTR 20.0%
!! CTTGAAATTAGAATTCAAAA+TGG + chr1_2:57848584-57848603 Msa0079810:exon 20.0%
!! ATTTGAATTTCTTCCTATTT+AGG + chr1_2:57849100-57849119 Msa0079810:intron 20.0%
!! AGATTCAAAAAAACCTAAAT+AGG - chr1_2:57849116-57849135 None:intergenic 20.0%
!!! TAGGTTTTTTTGAATCTTTA+TGG + chr1_2:57849119-57849138 Msa0079810:intron 20.0%
!! AATCTAATTTCCAAAATTTG+TGG - chr1_2:57849720-57849739 None:intergenic 20.0%
!! TGAATAGTATTATCTTAATC+CGG - chr1_2:57848342-57848361 None:intergenic 20.0%
!! TAAGATAATACTATTCAAGA+TGG + chr1_2:57848345-57848364 Msa0079810:five_prime_UTR 20.0%
!! CTTGAAATTAGAATTCAAAA+TGG + chr1_2:57848584-57848603 Msa0079810:exon 20.0%
!! ATTTGAATTTCTTCCTATTT+AGG + chr1_2:57849100-57849119 Msa0079810:intron 20.0%
!! AGATTCAAAAAAACCTAAAT+AGG - chr1_2:57849116-57849135 None:intergenic 20.0%
!!! TAGGTTTTTTTGAATCTTTA+TGG + chr1_2:57849119-57849138 Msa0079810:intron 20.0%
!! AATCTAATTTCCAAAATTTG+TGG - chr1_2:57849720-57849739 None:intergenic 20.0%
!!! AAGATTTTGAGAATTGATTC+TGG - chr1_2:57848421-57848440 None:intergenic 25.0%
! AAAACCTATAAATCGAGTAA+AGG + chr1_2:57848483-57848502 Msa0079810:five_prime_UTR 25.0%
!! TTTTCCTTTACTCGATTTAT+AGG - chr1_2:57848490-57848509 None:intergenic 25.0%
!! AAAAAGAAAGTGTGTTAATC+AGG + chr1_2:57848557-57848576 Msa0079810:five_prime_UTR 25.0%
! TTTGAGCATCTAAACAATTT+CGG + chr1_2:57849265-57849284 Msa0079810:CDS 25.0%
! ACTGAAATGATAGTTGTTAA+AGG + chr1_2:57849532-57849551 Msa0079810:CDS 25.0%
! CTGAAATGATAGTTGTTAAA+GGG + chr1_2:57849533-57849552 Msa0079810:CDS 25.0%
! TGAAATGATAGTTGTTAAAG+GGG + chr1_2:57849534-57849553 Msa0079810:CDS 25.0%
! AAGGTTATCTTATCATCAAT+TGG - chr1_2:57849572-57849591 None:intergenic 25.0%
!! GATAACTTTTCCACAAATTT+TGG + chr1_2:57849707-57849726 Msa0079810:three_prime_UTR 25.0%
! GAATAGTATTATCTTAATCC+GGG - chr1_2:57848341-57848360 None:intergenic 25.0%
!!! AAGATTTTGAGAATTGATTC+TGG - chr1_2:57848421-57848440 None:intergenic 25.0%
! AAAACCTATAAATCGAGTAA+AGG + chr1_2:57848483-57848502 Msa0079810:five_prime_UTR 25.0%
!! TTTTCCTTTACTCGATTTAT+AGG - chr1_2:57848490-57848509 None:intergenic 25.0%
!! AAAAAGAAAGTGTGTTAATC+AGG + chr1_2:57848557-57848576 Msa0079810:five_prime_UTR 25.0%
! TTTGAGCATCTAAACAATTT+CGG + chr1_2:57849265-57849284 Msa0079810:CDS 25.0%
! ACTGAAATGATAGTTGTTAA+AGG + chr1_2:57849532-57849551 Msa0079810:CDS 25.0%
! CTGAAATGATAGTTGTTAAA+GGG + chr1_2:57849533-57849552 Msa0079810:CDS 25.0%
! TGAAATGATAGTTGTTAAAG+GGG + chr1_2:57849534-57849553 Msa0079810:CDS 25.0%
! AAGGTTATCTTATCATCAAT+TGG - chr1_2:57849572-57849591 None:intergenic 25.0%
!! GATAACTTTTCCACAAATTT+TGG + chr1_2:57849707-57849726 Msa0079810:three_prime_UTR 25.0%
AGAATACAGTTTGGATGTAT+GGG - chr1_2:57848446-57848465 None:intergenic 30.0%
TAGAATACAGTTTGGATGTA+TGG - chr1_2:57848447-57848466 None:intergenic 30.0%
ACTGTTTGTAGAATACAGTT+TGG - chr1_2:57848455-57848474 None:intergenic 30.0%
! CTTTCTTTTTCTTGATAGGT+TGG - chr1_2:57848547-57848566 None:intergenic 30.0%
! CACACTTTCTTTTTCTTGAT+AGG - chr1_2:57848551-57848570 None:intergenic 30.0%
TTGTTAAAGAAACTCGTGAA+CGG + chr1_2:57848949-57848968 Msa0079810:CDS 30.0%
TCGATTAGAATGATTTCAGA+AGG - chr1_2:57849055-57849074 None:intergenic 30.0%
TCCAACTAACGATTTAAATC+TGG + chr1_2:57849174-57849193 Msa0079810:CDS 30.0%
ACCAGATTTAAATCGTTAGT+TGG - chr1_2:57849178-57849197 None:intergenic 30.0%
ATATGATTGCTGATCAGAAA+TGG + chr1_2:57849389-57849408 Msa0079810:CDS 30.0%
AAAAAACCATCAAGATACCA+AGG - chr1_2:57849454-57849473 None:intergenic 30.0%
! TTTCAGTTTCACCTTCATTT+TGG - chr1_2:57849519-57849538 None:intergenic 30.0%
GTTGTTAAAGGGGAATTTAT+AGG + chr1_2:57849544-57849563 Msa0079810:CDS 30.0%
GATAACCTTTGATTGATTGT+AGG + chr1_2:57849583-57849602 Msa0079810:three_prime_UTR 30.0%
GTAAACCTACAATCAATCAA+AGG - chr1_2:57849591-57849610 None:intergenic 30.0%
ATACCAACACAAGTATAGAA+TGG - chr1_2:57849618-57849637 None:intergenic 30.0%
AGAATACAGTTTGGATGTAT+GGG - chr1_2:57848446-57848465 None:intergenic 30.0%
TAGAATACAGTTTGGATGTA+TGG - chr1_2:57848447-57848466 None:intergenic 30.0%
ACTGTTTGTAGAATACAGTT+TGG - chr1_2:57848455-57848474 None:intergenic 30.0%
! CTTTCTTTTTCTTGATAGGT+TGG - chr1_2:57848547-57848566 None:intergenic 30.0%
! CACACTTTCTTTTTCTTGAT+AGG - chr1_2:57848551-57848570 None:intergenic 30.0%
TTGTTAAAGAAACTCGTGAA+CGG + chr1_2:57848949-57848968 Msa0079810:CDS 30.0%
TCGATTAGAATGATTTCAGA+AGG - chr1_2:57849055-57849074 None:intergenic 30.0%
TCCAACTAACGATTTAAATC+TGG + chr1_2:57849174-57849193 Msa0079810:CDS 30.0%
ACCAGATTTAAATCGTTAGT+TGG - chr1_2:57849178-57849197 None:intergenic 30.0%
ATATGATTGCTGATCAGAAA+TGG + chr1_2:57849389-57849408 Msa0079810:CDS 30.0%
AAAAAACCATCAAGATACCA+AGG - chr1_2:57849454-57849473 None:intergenic 30.0%
! TTTCAGTTTCACCTTCATTT+TGG - chr1_2:57849519-57849538 None:intergenic 30.0%
GTTGTTAAAGGGGAATTTAT+AGG + chr1_2:57849544-57849563 Msa0079810:CDS 30.0%
GATAACCTTTGATTGATTGT+AGG + chr1_2:57849583-57849602 Msa0079810:three_prime_UTR 30.0%
GTAAACCTACAATCAATCAA+AGG - chr1_2:57849591-57849610 None:intergenic 30.0%
ATACCAACACAAGTATAGAA+TGG - chr1_2:57849618-57849637 None:intergenic 30.0%
AGAAAGATCTACCAACTTCA+CGG - chr1_2:57848842-57848861 None:intergenic 35.0%
! TTCTTTTATCGCTTTCCTGA+AGG + chr1_2:57848981-57849000 Msa0079810:CDS 35.0%
AGAAATGCGATCGAAAACAT+CGG - chr1_2:57849018-57849037 None:intergenic 35.0%
ATGATTTCAGAAGGAGAAAG+CGG - chr1_2:57849046-57849065 None:intergenic 35.0%
AATCTGGTGATAGTATCACA+CGG + chr1_2:57849190-57849209 Msa0079810:CDS 35.0%
! CACGAATTTTCTTGATGAAG+TGG + chr1_2:57849221-57849240 Msa0079810:CDS 35.0%
CAGTTTGGCGATTAATCATA+CGG + chr1_2:57849333-57849352 Msa0079810:CDS 35.0%
TTCTGATCAGCAATCATATC+CGG - chr1_2:57849388-57849407 None:intergenic 35.0%
GATGAAGCAATCCAAAATGA+AGG + chr1_2:57849505-57849524 Msa0079810:CDS 35.0%
AAGCCATTCTATACTTGTGT+TGG + chr1_2:57849612-57849631 Msa0079810:three_prime_UTR 35.0%
! CGGATCGTTTAGATTTTAAG+CGG + chr1_2:57849773-57849792 Msa0079810:three_prime_UTR 35.0%
AGAAAGATCTACCAACTTCA+CGG - chr1_2:57848842-57848861 None:intergenic 35.0%
! TTCTTTTATCGCTTTCCTGA+AGG + chr1_2:57848981-57849000 Msa0079810:CDS 35.0%
AGAAATGCGATCGAAAACAT+CGG - chr1_2:57849018-57849037 None:intergenic 35.0%
ATGATTTCAGAAGGAGAAAG+CGG - chr1_2:57849046-57849065 None:intergenic 35.0%
AATCTGGTGATAGTATCACA+CGG + chr1_2:57849190-57849209 Msa0079810:CDS 35.0%
! CACGAATTTTCTTGATGAAG+TGG + chr1_2:57849221-57849240 Msa0079810:CDS 35.0%
CAGTTTGGCGATTAATCATA+CGG + chr1_2:57849333-57849352 Msa0079810:CDS 35.0%
TTCTGATCAGCAATCATATC+CGG - chr1_2:57849388-57849407 None:intergenic 35.0%
GATGAAGCAATCCAAAATGA+AGG + chr1_2:57849505-57849524 Msa0079810:CDS 35.0%
AAGCCATTCTATACTTGTGT+TGG + chr1_2:57849612-57849631 Msa0079810:three_prime_UTR 35.0%
! CGGATCGTTTAGATTTTAAG+CGG + chr1_2:57849773-57849792 Msa0079810:three_prime_UTR 35.0%
CGCATTAGGATTATCCTCTT+TGG - chr1_2:57848618-57848637 None:intergenic 40.0%
AGGATAATCCTAATGCGTCA+CGG + chr1_2:57848621-57848640 Msa0079810:CDS 40.0%
ATGGAGTTAACTGAATGCTG+TGG - chr1_2:57848695-57848714 None:intergenic 40.0%
AGCATTCAGTTAACTCCATC+CGG + chr1_2:57848696-57848715 Msa0079810:CDS 40.0%
TCTTCATACGCTCTTGAACT+TGG - chr1_2:57848929-57848948 None:intergenic 40.0%
AAAGAAACTCGTGAACGGTT+TGG + chr1_2:57848954-57848973 Msa0079810:CDS 40.0%
AAGAAACTCGTGAACGGTTT+GGG + chr1_2:57848955-57848974 Msa0079810:CDS 40.0%
! GATGTTTTCGATCGCATTTC+TGG + chr1_2:57849017-57849036 Msa0079810:CDS 40.0%
TCTTGATGAAGTGGTTCAAG+TGG + chr1_2:57849230-57849249 Msa0079810:CDS 40.0%
ATTTCGGAAACTGCGAGTTT+CGG + chr1_2:57849281-57849300 Msa0079810:CDS 40.0%
GGAAGAAGAGATGCTTGAAT+GGG + chr1_2:57849354-57849373 Msa0079810:CDS 40.0%
GAAGAAGAGATGCTTGAATG+GGG + chr1_2:57849355-57849374 Msa0079810:CDS 40.0%
CTTGGAATGATCAATGTCCT+TGG + chr1_2:57849434-57849453 Msa0079810:CDS 40.0%
CAATGTCCTTGGTATCTTGA+TGG + chr1_2:57849445-57849464 Msa0079810:CDS 40.0%
CTAAACGATCCGATTGAGAT+TGG - chr1_2:57849765-57849784 None:intergenic 40.0%
GATTACTCGGATCTCAAACT+TGG - chr1_2:57849826-57849845 None:intergenic 40.0%
CGCATTAGGATTATCCTCTT+TGG - chr1_2:57848618-57848637 None:intergenic 40.0%
AGGATAATCCTAATGCGTCA+CGG + chr1_2:57848621-57848640 Msa0079810:CDS 40.0%
ATGGAGTTAACTGAATGCTG+TGG - chr1_2:57848695-57848714 None:intergenic 40.0%
AGCATTCAGTTAACTCCATC+CGG + chr1_2:57848696-57848715 Msa0079810:CDS 40.0%
TCTTCATACGCTCTTGAACT+TGG - chr1_2:57848929-57848948 None:intergenic 40.0%
AAAGAAACTCGTGAACGGTT+TGG + chr1_2:57848954-57848973 Msa0079810:CDS 40.0%
AAGAAACTCGTGAACGGTTT+GGG + chr1_2:57848955-57848974 Msa0079810:CDS 40.0%
! GATGTTTTCGATCGCATTTC+TGG + chr1_2:57849017-57849036 Msa0079810:CDS 40.0%
TCTTGATGAAGTGGTTCAAG+TGG + chr1_2:57849230-57849249 Msa0079810:CDS 40.0%
ATTTCGGAAACTGCGAGTTT+CGG + chr1_2:57849281-57849300 Msa0079810:CDS 40.0%
GGAAGAAGAGATGCTTGAAT+GGG + chr1_2:57849354-57849373 Msa0079810:CDS 40.0%
GAAGAAGAGATGCTTGAATG+GGG + chr1_2:57849355-57849374 Msa0079810:CDS 40.0%
CTTGGAATGATCAATGTCCT+TGG + chr1_2:57849434-57849453 Msa0079810:CDS 40.0%
CAATGTCCTTGGTATCTTGA+TGG + chr1_2:57849445-57849464 Msa0079810:CDS 40.0%
CTAAACGATCCGATTGAGAT+TGG - chr1_2:57849765-57849784 None:intergenic 40.0%
GATTACTCGGATCTCAAACT+TGG - chr1_2:57849826-57849845 None:intergenic 40.0%
! AATTGATTCTGGTCAAGCCG+CGG - chr1_2:57848410-57848429 None:intergenic 45.0%
AAATGGGTGTGCTTCCAAAG+AGG + chr1_2:57848601-57848620 Msa0079810:exon 45.0%
TGGTGTATGCTGACGTATCA+AGG - chr1_2:57848662-57848681 None:intergenic 45.0%
GTTAACTGAATGCTGTGGTC+TGG - chr1_2:57848690-57848709 None:intergenic 45.0%
AATGCGATCGAAAACATCGG+CGG - chr1_2:57849015-57849034 None:intergenic 45.0%
GATGAAGTGGTTCAAGTGGA+CGG + chr1_2:57849234-57849253 Msa0079810:CDS 45.0%
TTTCGGAAACTGCGAGTTTC+GGG + chr1_2:57849282-57849301 Msa0079810:CDS 45.0%
! GAGTGGTGGAGAATACAGTT+TGG + chr1_2:57849318-57849337 Msa0079810:CDS 45.0%
CGGAAGAAGAGATGCTTGAA+TGG + chr1_2:57849353-57849372 Msa0079810:CDS 45.0%
TGATCATTCCAAGCACCTCT+AGG - chr1_2:57849427-57849446 None:intergenic 45.0%
TGTGACCGTCCAATCTCAAT+CGG + chr1_2:57849753-57849772 Msa0079810:three_prime_UTR 45.0%
ACGATCCGATTGAGATTGGA+CGG - chr1_2:57849761-57849780 None:intergenic 45.0%
! AATTGATTCTGGTCAAGCCG+CGG - chr1_2:57848410-57848429 None:intergenic 45.0%
AAATGGGTGTGCTTCCAAAG+AGG + chr1_2:57848601-57848620 Msa0079810:exon 45.0%
TGGTGTATGCTGACGTATCA+AGG - chr1_2:57848662-57848681 None:intergenic 45.0%
GTTAACTGAATGCTGTGGTC+TGG - chr1_2:57848690-57848709 None:intergenic 45.0%
AATGCGATCGAAAACATCGG+CGG - chr1_2:57849015-57849034 None:intergenic 45.0%
GATGAAGTGGTTCAAGTGGA+CGG + chr1_2:57849234-57849253 Msa0079810:CDS 45.0%
TTTCGGAAACTGCGAGTTTC+GGG + chr1_2:57849282-57849301 Msa0079810:CDS 45.0%
! GAGTGGTGGAGAATACAGTT+TGG + chr1_2:57849318-57849337 Msa0079810:CDS 45.0%
CGGAAGAAGAGATGCTTGAA+TGG + chr1_2:57849353-57849372 Msa0079810:CDS 45.0%
TGATCATTCCAAGCACCTCT+AGG - chr1_2:57849427-57849446 None:intergenic 45.0%
TGTGACCGTCCAATCTCAAT+CGG + chr1_2:57849753-57849772 Msa0079810:three_prime_UTR 45.0%
ACGATCCGATTGAGATTGGA+CGG - chr1_2:57849761-57849780 None:intergenic 45.0%
GCAGCTGTAATGTGTAAGCG+AGG - chr1_2:57848385-57848404 None:intergenic 50.0%
AGAAGTAGAGACGCCAGTCA+GGG - chr1_2:57848785-57848804 None:intergenic 50.0%
TAGAAGTAGAGACGCCAGTC+AGG - chr1_2:57848786-57848805 None:intergenic 50.0%
TCTACCAACTTCACGGAGTG+TGG - chr1_2:57848835-57848854 None:intergenic 50.0%
! TTCTCCAAGAAGCGCGTGAT+CGG + chr1_2:57848858-57848877 Msa0079810:CDS 50.0%
CGCGTACGTGAACAGGATTT+CGG + chr1_2:57848897-57848916 Msa0079810:CDS 50.0%
! AAACTGCGAGTTTCGGGTGA+TGG + chr1_2:57849288-57849307 Msa0079810:CDS 50.0%
!! AGTTTCGGGTGATGGAGCAA+GGG + chr1_2:57849296-57849315 Msa0079810:CDS 50.0%
GCTTGAATGGGGAATGTCTC+CGG + chr1_2:57849366-57849385 Msa0079810:CDS 50.0%
GATTGGACGGTCACAATGCA+TGG - chr1_2:57849748-57849767 None:intergenic 50.0%
GCAGCTGTAATGTGTAAGCG+AGG - chr1_2:57848385-57848404 None:intergenic 50.0%
AGAAGTAGAGACGCCAGTCA+GGG - chr1_2:57848785-57848804 None:intergenic 50.0%
TAGAAGTAGAGACGCCAGTC+AGG - chr1_2:57848786-57848805 None:intergenic 50.0%
TCTACCAACTTCACGGAGTG+TGG - chr1_2:57848835-57848854 None:intergenic 50.0%
! TTCTCCAAGAAGCGCGTGAT+CGG + chr1_2:57848858-57848877 Msa0079810:CDS 50.0%
CGCGTACGTGAACAGGATTT+CGG + chr1_2:57848897-57848916 Msa0079810:CDS 50.0%
! AAACTGCGAGTTTCGGGTGA+TGG + chr1_2:57849288-57849307 Msa0079810:CDS 50.0%
!! AGTTTCGGGTGATGGAGCAA+GGG + chr1_2:57849296-57849315 Msa0079810:CDS 50.0%
GCTTGAATGGGGAATGTCTC+CGG + chr1_2:57849366-57849385 Msa0079810:CDS 50.0%
GATTGGACGGTCACAATGCA+TGG - chr1_2:57849748-57849767 None:intergenic 50.0%
AATGCTGTGGTCTGGTGTGG+TGG - chr1_2:57848682-57848701 None:intergenic 55.0%
CTGAATGCTGTGGTCTGGTG+TGG - chr1_2:57848685-57848704 None:intergenic 55.0%
AATCTCCGCCGTCTCGTTTC+CGG + chr1_2:57848747-57848766 Msa0079810:CDS 55.0%
GAAGTAGAGACGCCAGTCAG+GGG - chr1_2:57848784-57848803 None:intergenic 55.0%
AACTTCACGGAGTGTGGACC+GGG - chr1_2:57848829-57848848 None:intergenic 55.0%
CAACTTCACGGAGTGTGGAC+CGG - chr1_2:57848830-57848849 None:intergenic 55.0%
AGAATCGCGCGTACGTGAAC+AGG + chr1_2:57848890-57848909 Msa0079810:CDS 55.0%
GAAGTGGTTCAAGTGGACGG+TGG + chr1_2:57849237-57849256 Msa0079810:CDS 55.0%
!! GAGTTTCGGGTGATGGAGCA+AGG + chr1_2:57849295-57849314 Msa0079810:CDS 55.0%
AATGCTGTGGTCTGGTGTGG+TGG - chr1_2:57848682-57848701 None:intergenic 55.0%
CTGAATGCTGTGGTCTGGTG+TGG - chr1_2:57848685-57848704 None:intergenic 55.0%
AATCTCCGCCGTCTCGTTTC+CGG + chr1_2:57848747-57848766 Msa0079810:CDS 55.0%
GAAGTAGAGACGCCAGTCAG+GGG - chr1_2:57848784-57848803 None:intergenic 55.0%
AACTTCACGGAGTGTGGACC+GGG - chr1_2:57848829-57848848 None:intergenic 55.0%
CAACTTCACGGAGTGTGGAC+CGG - chr1_2:57848830-57848849 None:intergenic 55.0%
AGAATCGCGCGTACGTGAAC+AGG + chr1_2:57848890-57848909 Msa0079810:CDS 55.0%
GAAGTGGTTCAAGTGGACGG+TGG + chr1_2:57849237-57849256 Msa0079810:CDS 55.0%
!! GAGTTTCGGGTGATGGAGCA+AGG + chr1_2:57849295-57849314 Msa0079810:CDS 55.0%
ACACATTACAGCTGCCGCCG+CGG + chr1_2:57848390-57848409 Msa0079810:five_prime_UTR 60.0%
TGATTCTGGTCAAGCCGCGG+CGG - chr1_2:57848407-57848426 None:intergenic 60.0%
GTGACTCGCCGTGACGCATT+AGG - chr1_2:57848632-57848651 None:intergenic 60.0%
ATGCGTCACGGCGAGTCACA+AGG + chr1_2:57848633-57848652 Msa0079810:CDS 60.0%
GGAAACGAGACGGCGGAGAT+TGG - chr1_2:57848748-57848767 None:intergenic 60.0%
AGCCTTGGCCGGAAACGAGA+CGG - chr1_2:57848758-57848777 None:intergenic 60.0%
CGGTCCACACTCCGTGAAGT+TGG + chr1_2:57848828-57848847 Msa0079810:CDS 60.0%
GCGATCGAAAACATCGGCGG+CGG - chr1_2:57849012-57849031 None:intergenic 60.0%
! GTGATGGAGCAAGGGAGTGG+TGG + chr1_2:57849304-57849323 Msa0079810:CDS 60.0%
!! CAGATGCGCCTAGAGGTGCT+TGG + chr1_2:57849416-57849435 Msa0079810:CDS 60.0%
ACACATTACAGCTGCCGCCG+CGG + chr1_2:57848390-57848409 Msa0079810:five_prime_UTR 60.0%
TGATTCTGGTCAAGCCGCGG+CGG - chr1_2:57848407-57848426 None:intergenic 60.0%
GTGACTCGCCGTGACGCATT+AGG - chr1_2:57848632-57848651 None:intergenic 60.0%
ATGCGTCACGGCGAGTCACA+AGG + chr1_2:57848633-57848652 Msa0079810:CDS 60.0%
GGAAACGAGACGGCGGAGAT+TGG - chr1_2:57848748-57848767 None:intergenic 60.0%
AGCCTTGGCCGGAAACGAGA+CGG - chr1_2:57848758-57848777 None:intergenic 60.0%
CGGTCCACACTCCGTGAAGT+TGG + chr1_2:57848828-57848847 Msa0079810:CDS 60.0%
GCGATCGAAAACATCGGCGG+CGG - chr1_2:57849012-57849031 None:intergenic 60.0%
! GTGATGGAGCAAGGGAGTGG+TGG + chr1_2:57849304-57849323 Msa0079810:CDS 60.0%
!! CAGATGCGCCTAGAGGTGCT+TGG + chr1_2:57849416-57849435 Msa0079810:CDS 60.0%
CTTGGCCGGAAACGAGACGG+CGG - chr1_2:57848755-57848774 None:intergenic 65.0%
GACGCCGATCACGCGCTTCT+TGG - chr1_2:57848865-57848884 None:intergenic 65.0%
! TCGGCGGCGGATTCACCTTC+AGG - chr1_2:57848999-57849018 None:intergenic 65.0%
!! CGGGTGATGGAGCAAGGGAG+TGG + chr1_2:57849301-57849320 Msa0079810:CDS 65.0%
TGGCGTGCAGATGCGCCTAG+AGG + chr1_2:57849409-57849428 Msa0079810:CDS 65.0%
CTTGGCCGGAAACGAGACGG+CGG - chr1_2:57848755-57848774 None:intergenic 65.0%
GACGCCGATCACGCGCTTCT+TGG - chr1_2:57848865-57848884 None:intergenic 65.0%
! TCGGCGGCGGATTCACCTTC+AGG - chr1_2:57848999-57849018 None:intergenic 65.0%
!! CGGGTGATGGAGCAAGGGAG+TGG + chr1_2:57849301-57849320 Msa0079810:CDS 65.0%
TGGCGTGCAGATGCGCCTAG+AGG + chr1_2:57849409-57849428 Msa0079810:CDS 65.0%
CGGGCTTGTGCGATGCCGGA+TGG - chr1_2:57848714-57848733 None:intergenic 70.0%
!! GTGGCGGGCTTGTGCGATGC+CGG - chr1_2:57848718-57848737 None:intergenic 70.0%
ATCGCACAAGCCCGCCACGC+CGG + chr1_2:57848720-57848739 Msa0079810:CDS 70.0%
GAGACGGCGGAGATTGGCGC+CGG - chr1_2:57848742-57848761 None:intergenic 70.0%
CGCCGTCTCGTTTCCGGCCA+AGG + chr1_2:57848753-57848772 Msa0079810:CDS 70.0%
GTCAGGGGAGCAGCCTTGGC+CGG - chr1_2:57848769-57848788 None:intergenic 70.0%
GCCAAGGCTGCTCCCCTGAC+TGG + chr1_2:57848769-57848788 Msa0079810:CDS 70.0%
GCCAGTCAGGGGAGCAGCCT+TGG - chr1_2:57848773-57848792 None:intergenic 70.0%
TCTCTCCCTACGCCCGCACC+CGG + chr1_2:57848808-57848827 Msa0079810:CDS 70.0%
ACGGAGTGTGGACCGGGTGC+GGG - chr1_2:57848823-57848842 None:intergenic 70.0%
CACGGAGTGTGGACCGGGTG+CGG - chr1_2:57848824-57848843 None:intergenic 70.0%
CGGGCTTGTGCGATGCCGGA+TGG - chr1_2:57848714-57848733 None:intergenic 70.0%
!! GTGGCGGGCTTGTGCGATGC+CGG - chr1_2:57848718-57848737 None:intergenic 70.0%
ATCGCACAAGCCCGCCACGC+CGG + chr1_2:57848720-57848739 Msa0079810:CDS 70.0%
GAGACGGCGGAGATTGGCGC+CGG - chr1_2:57848742-57848761 None:intergenic 70.0%
CGCCGTCTCGTTTCCGGCCA+AGG + chr1_2:57848753-57848772 Msa0079810:CDS 70.0%
GTCAGGGGAGCAGCCTTGGC+CGG - chr1_2:57848769-57848788 None:intergenic 70.0%
GCCAAGGCTGCTCCCCTGAC+TGG + chr1_2:57848769-57848788 Msa0079810:CDS 70.0%
GCCAGTCAGGGGAGCAGCCT+TGG - chr1_2:57848773-57848792 None:intergenic 70.0%
TCTCTCCCTACGCCCGCACC+CGG + chr1_2:57848808-57848827 Msa0079810:CDS 70.0%
ACGGAGTGTGGACCGGGTGC+GGG - chr1_2:57848823-57848842 None:intergenic 70.0%
CACGGAGTGTGGACCGGGTG+CGG - chr1_2:57848824-57848843 None:intergenic 70.0%
!! GAGATTGGCGCCGGCGTGGC+GGG - chr1_2:57848733-57848752 None:intergenic 75.0%
!! GGAGATTGGCGCCGGCGTGG+CGG - chr1_2:57848734-57848753 None:intergenic 75.0%
GTGGACCGGGTGCGGGCGTA+GGG - chr1_2:57848816-57848835 None:intergenic 75.0%
TGTGGACCGGGTGCGGGCGT+AGG - chr1_2:57848817-57848836 None:intergenic 75.0%
!! GAGATTGGCGCCGGCGTGGC+GGG - chr1_2:57848733-57848752 None:intergenic 75.0%
!! GGAGATTGGCGCCGGCGTGG+CGG - chr1_2:57848734-57848753 None:intergenic 75.0%
GTGGACCGGGTGCGGGCGTA+GGG - chr1_2:57848816-57848835 None:intergenic 75.0%
TGTGGACCGGGTGCGGGCGT+AGG - chr1_2:57848817-57848836 None:intergenic 75.0%
!!! GGCGGAGATTGGCGCCGGCG+TGG - chr1_2:57848737-57848756 None:intergenic 80.0%
!!! GGCGGAGATTGGCGCCGGCG+TGG - chr1_2:57848737-57848756 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 57848339 57849850 57848339 ID=Msa0079810;Name=Msa0079810
chr1_2 mRNA 57848339 57849850 57848339 ID=Msa0079810-mRNA-1;Parent=Msa0079810;Name=Msa0079810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=264|1|1|1|1|1|2|274|296
chr1_2 exon 57848339 57849038 57848339 ID=Msa0079810-mRNA-1:exon:18365;Parent=Msa0079810-mRNA-1
chr1_2 exon 57849122 57849850 57849122 ID=Msa0079810-mRNA-1:exon:18366;Parent=Msa0079810-mRNA-1
chr1_2 five_prime_UTR 57848339 57848602 57848339 ID=Msa0079810-mRNA-1:five_prime_utr;Parent=Msa0079810-mRNA-1
chr1_2 CDS 57848603 57849038 57848603 ID=Msa0079810-mRNA-1:cds;Parent=Msa0079810-mRNA-1
chr1_2 CDS 57849122 57849576 57849122 ID=Msa0079810-mRNA-1:cds;Parent=Msa0079810-mRNA-1
chr1_2 three_prime_UTR 57849577 57849850 57849577 ID=Msa0079810-mRNA-1:three_prime_utr;Parent=Msa0079810-mRNA-1
Gene Sequence

>Msa0079810

ATGGGTGTGCTTCCAAAGAGGATAATCCTAATGCGTCACGGCGAGTCACAAGGAAACCTTGATACGTCAGCATACACCACCACACCAGACCACAGCATTCAGTTAACTCCATCCGGCATCGCACAAGCCCGCCACGCCGGCGCCAATCTCCGCCGTCTCGTTTCCGGCCAAGGCTGCTCCCCTGACTGGCGTCTCTACTTCTACGTCTCTCCCTACGCCCGCACCCGGTCCACACTCCGTGAAGTTGGTAGATCTTTCTCCAAGAAGCGCGTGATCGGCGTCAGAGAAGAATCGCGCGTACGTGAACAGGATTTCGGTAACTTCCAAGTTCAAGAGCGTATGAAGATTGTTAAAGAAACTCGTGAACGGTTTGGGAGATTCTTTTATCGCTTTCCTGAAGGTGAATCCGCCGCCGATGTTTTCGATCGCATTTCTGGTTTTTTTGAATCTTTATGGAGAGACATTGATTTGAATCGTCTTCATCACGATCCAACTAACGATTTAAATCTGGTGATAGTATCACACGGATTAACATCACGAATTTTCTTGATGAAGTGGTTCAAGTGGACGGTGGAGCAATTTGAGCATCTAAACAATTTCGGAAACTGCGAGTTTCGGGTGATGGAGCAAGGGAGTGGTGGAGAATACAGTTTGGCGATTAATCATACGGAAGAAGAGATGCTTGAATGGGGAATGTCTCCGGATATGATTGCTGATCAGAAATGGCGTGCAGATGCGCCTAGAGGTGCTTGGAATGATCAATGTCCTTGGTATCTTGATGGTTTTTTTGATCGTTTTGCTGAAGATGAATCTGACGATGATGAAGCAATCCAAAATGAAGGTGAAACTGAAATGATAGTTGTTAAAGGGGAATTTATAGGTTCCAATTGA
Protein sequence

>Msa0079810

MGVLPKRIILMRHGESQGNLDTSAYTTTPDHSIQLTPSGIAQARHAGANLRRLVSGQGCSPDWRLYFYVSPYARTRSTLREVGRSFSKKRVIGVREESRVREQDFGNFQVQERMKIVKETRERFGRFFYRFPEGESAADVFDRISGFFESLWRDIDLNRLHHDPTNDLNLVIVSHGLTSRIFLMKWFKWTVEQFEHLNNFGNCEFRVMEQGSGGEYSLAINHTEEEMLEWGMSPDMIADQKWRADAPRGAWNDQCPWYLDGFFDRFAEDESDDDEAIQNEGETEMIVVKGEFIGSN*