AlfalfaGEDB | Msa0079810

M. sativa cultivar zhongmu-4 / Msa0079810

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704
PFAM: PF00300.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079810	XP_003591056.1	97.917	288	5	1	1	287	1	288	0.0	584

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079810	sp\|Q9MAA2\|AT74_ARATH	72.222	270	75	0	3	272	7	276	3.37e-149	423

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079810	G7I7H1	97.917	288	5	1	1	287	1	288	0.0	584

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0033140	Msa0079810	0.939408	1.337833e-99	-8.615850e-47
Msa0079810	Msa0127400	0.883707	3.573052e-71	-8.615850e-47
Msa0079810	Msa0165650	0.853023	3.143141e-61	-8.615850e-47
Msa0079810	Msa0481770	0.815898	7.302720e-52	-8.615850e-47
Msa0079810	Msa0654480	0.800117	1.675461e-48	-8.615850e-47
Msa0079810	Msa1453600	0.807070	6.048416e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079810	MtrunA17_Chr1g0191411	97.917	288	5	1	1	287	1	288	0.0	584
Msa0079810	MtrunA17_Chr7g0273211	70.877	285	80	1	2	286	34	315	5.91e-156	438
Msa0079810	MtrunA17_Chr5g0397331	52.060	267	124	3	5	269	82	346	1.46e-93	281

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079810	AT3G05170.1	72.222	270	75	0	3	272	7	276	3.43e-150	423
Msa0079810	AT1G08940.1	68.953	277	80	3	3	275	7	281	6.61e-142	401

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Find 109 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTATAAATCGAGTAA+AGG	0.531486	1_2:+57848483	Msa0079810:five_prime_UTR
AAACTGCGAGTTTCGGGTGA+TGG	0.492323	1_2:+57849288	Msa0079810:CDS
AAAGAAACTCGTGAACGGTT+TGG	0.387033	1_2:+57848954	Msa0079810:CDS
AAATGGGTGTGCTTCCAAAG+AGG	0.650418	1_2:+57848601	Msa0079810:exon
AACTTCACGGAGTGTGGACC+GGG	0.484362	1_2:-57848826	None:intergenic
AAGAAACTCGTGAACGGTTT+GGG	0.344466	1_2:+57848955	Msa0079810:CDS
AAGCCATTCTATACTTGTGT+TGG	0.563262	1_2:+57849612	Msa0079810:three_prime_UTR
AAGGTTATCTTATCATCAAT+TGG	0.379933	1_2:-57849569	None:intergenic
AATCTAATTTCCAAAATTTG+TGG	0.411855	1_2:-57849717	None:intergenic
AATCTCCGCCGTCTCGTTTC+CGG	0.313382	1_2:+57848747	Msa0079810:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAATACAGTTTGGATGTAT+GGG	-	chr1_2:57848446-57848465	None:intergenic	30.0%
TAGAATACAGTTTGGATGTA+TGG	-	chr1_2:57848447-57848466	None:intergenic	30.0%
ACTGTTTGTAGAATACAGTT+TGG	-	chr1_2:57848455-57848474	None:intergenic	30.0%
TTGTTAAAGAAACTCGTGAA+CGG	+	chr1_2:57848949-57848968	Msa0079810:CDS	30.0%
TCGATTAGAATGATTTCAGA+AGG	-	chr1_2:57849055-57849074	None:intergenic	30.0%
TCCAACTAACGATTTAAATC+TGG	+	chr1_2:57849174-57849193	Msa0079810:CDS	30.0%
ACCAGATTTAAATCGTTAGT+TGG	-	chr1_2:57849178-57849197	None:intergenic	30.0%
ATATGATTGCTGATCAGAAA+TGG	+	chr1_2:57849389-57849408	Msa0079810:CDS	30.0%
AAAAAACCATCAAGATACCA+AGG	-	chr1_2:57849454-57849473	None:intergenic	30.0%
GTTGTTAAAGGGGAATTTAT+AGG	+	chr1_2:57849544-57849563	Msa0079810:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	57848339	57849850	57848339	ID=Msa0079810;Name=Msa0079810
chr1_2	mRNA	57848339	57849850	57848339	ID=Msa0079810-mRNA-1;Parent=Msa0079810;Name=Msa0079810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=264\|1\|1\|1\|1\|1\|2\|274\|296
chr1_2	exon	57848339	57849038	57848339	ID=Msa0079810-mRNA-1:exon:18365;Parent=Msa0079810-mRNA-1
chr1_2	exon	57849122	57849850	57849122	ID=Msa0079810-mRNA-1:exon:18366;Parent=Msa0079810-mRNA-1
chr1_2	five_prime_UTR	57848339	57848602	57848339	ID=Msa0079810-mRNA-1:five_prime_utr;Parent=Msa0079810-mRNA-1
chr1_2	CDS	57848603	57849038	57848603	ID=Msa0079810-mRNA-1:cds;Parent=Msa0079810-mRNA-1
chr1_2	CDS	57849122	57849576	57849122	ID=Msa0079810-mRNA-1:cds;Parent=Msa0079810-mRNA-1
chr1_2	three_prime_UTR	57849577	57849850	57849577	ID=Msa0079810-mRNA-1:three_prime_utr;Parent=Msa0079810-mRNA-1

Gene Sequence

>Msa0079810

ATGGGTGTGCTTCCAAAGAGGATAATCCTAATGCGTCACGGCGAGTCACAAGGAAACCTTGATACGTCAGCATACACCACCACACCAGACCACAGCATTCAGTTAACTCCATCCGGCATCGCACAAGCCCGCCACGCCGGCGCCAATCTCCGCCGTCTCGTTTCCGGCCAAGGCTGCTCCCCTGACTGGCGTCTCTACTTCTACGTCTCTCCCTACGCCCGCACCCGGTCCACACTCCGTGAAGTTGGTAGATCTTTCTCCAAGAAGCGCGTGATCGGCGTCAGAGAAGAATCGCGCGTACGTGAACAGGATTTCGGTAACTTCCAAGTTCAAGAGCGTATGAAGATTGTTAAAGAAACTCGTGAACGGTTTGGGAGATTCTTTTATCGCTTTCCTGAAGGTGAATCCGCCGCCGATGTTTTCGATCGCATTTCTGGTTTTTTTGAATCTTTATGGAGAGACATTGATTTGAATCGTCTTCATCACGATCCAACTAACGATTTAAATCTGGTGATAGTATCACACGGATTAACATCACGAATTTTCTTGATGAAGTGGTTCAAGTGGACGGTGGAGCAATTTGAGCATCTAAACAATTTCGGAAACTGCGAGTTTCGGGTGATGGAGCAAGGGAGTGGTGGAGAATACAGTTTGGCGATTAATCATACGGAAGAAGAGATGCTTGAATGGGGAATGTCTCCGGATATGATTGCTGATCAGAAATGGCGTGCAGATGCGCCTAGAGGTGCTTGGAATGATCAATGTCCTTGGTATCTTGATGGTTTTTTTGATCGTTTTGCTGAAGATGAATCTGACGATGATGAAGCAATCCAAAATGAAGGTGAAACTGAAATGATAGTTGTTAAAGGGGAATTTATAGGTTCCAATTGA

Protein sequence

>Msa0079810

MGVLPKRIILMRHGESQGNLDTSAYTTTPDHSIQLTPSGIAQARHAGANLRRLVSGQGCSPDWRLYFYVSPYARTRSTLREVGRSFSKKRVIGVREESRVREQDFGNFQVQERMKIVKETRERFGRFFYRFPEGESAADVFDRISGFFESLWRDIDLNRLHHDPTNDLNLVIVSHGLTSRIFLMKWFKWTVEQFEHLNNFGNCEFRVMEQGSGGEYSLAINHTEEEMLEWGMSPDMIADQKWRADAPRGAWNDQCPWYLDGFFDRFAEDESDDDEAIQNEGETEMIVVKGEFIGSN*