AlfalfaGEDB | Msa0165650

M. sativa cultivar zhongmu-4 / Msa0165650

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704
PFAM: PF00300.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165650	XP_003591056.1	97.270	293	6	2	1	292	1	292	0.0	586

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165650	sp\|Q9MAA2\|AT74_ARATH	72.222	270	75	0	3	272	7	276	3.15e-149	423

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165650	G7I7H1	97.270	293	6	2	1	292	1	292	0.0	586

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0033140	Msa0165650	0.902687	7.514732e-79	-8.615850e-47
Msa0079810	Msa0165650	0.853023	3.143141e-61	-8.615850e-47
Msa0127400	Msa0165650	0.893876	4.178399e-75	-8.615850e-47
Msa0165650	Msa0481770	0.816593	5.105610e-52	-8.615850e-47
Msa0165650	Msa1453600	0.822867	1.882021e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165650	MtrunA17_Chr1g0191411	97.270	293	6	2	1	292	1	292	0.0	586
Msa0165650	MtrunA17_Chr7g0273211	70.877	285	80	1	2	286	34	315	3.16e-156	438
Msa0165650	MtrunA17_Chr5g0397331	52.060	267	124	3	5	269	82	346	1.09e-93	281

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165650	AT3G05170.1	72.222	270	75	0	3	272	7	276	3.20e-150	423
Msa0165650	AT1G08940.1	68.953	277	80	3	3	275	7	281	4.35e-142	401

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Find 106 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTATAAATCGAGTAA+AGG	0.531486	1_4:+46351114	Msa0165650:five_prime_UTR
AAACTGCGAGTTTCGGGTGA+TGG	0.492323	1_4:+46351918	Msa0165650:CDS
AAAGAAACTCGTGAACGGTT+TGG	0.387033	1_4:+46351585	Msa0165650:CDS
AAATGGGTGTGCTTCCAAAG+AGG	0.650418	1_4:+46351232	Msa0165650:exon
AACTTCACGGAGTGTGGACC+GGG	0.484362	1_4:-46351457	None:intergenic
AAGAAACTCGTGAACGGTTT+GGG	0.344466	1_4:+46351586	Msa0165650:CDS
AAGCCATTCTATACTTGTGT+TGG	0.563262	1_4:+46352263	Msa0165650:three_prime_UTR
AAGGTTATCTTATCATCAAT+TGG	0.379933	1_4:-46352220	None:intergenic
AATCTAATTTCCAAAATTTG+TGG	0.411855	1_4:-46352368	None:intergenic
AATCTCCGCCGTCTCGTTTC+CGG	0.313382	1_4:+46351378	Msa0165650:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAATACAGTTTGGATGTAT+GGG	-	chr1_4:46351077-46351096	None:intergenic	30.0%
TAGAATACAGTTTGGATGTA+TGG	-	chr1_4:46351078-46351097	None:intergenic	30.0%
ACTGTTTGTAGAATACAGTT+TGG	-	chr1_4:46351086-46351105	None:intergenic	30.0%
TTGTTAAAGAAACTCGTGAA+CGG	+	chr1_4:46351580-46351599	Msa0165650:CDS	30.0%
TCGATTAGAATGATTTCAGA+AGG	-	chr1_4:46351686-46351705	None:intergenic	30.0%
TCCAACTAACGATTTAAATC+TGG	+	chr1_4:46351804-46351823	Msa0165650:CDS	30.0%
ACCAGATTTAAATCGTTAGT+TGG	-	chr1_4:46351808-46351827	None:intergenic	30.0%
ATATGATTGCTGATCAGAAA+TGG	+	chr1_4:46352019-46352038	Msa0165650:CDS	30.0%
AAAAAACCATCAAGATACCA+AGG	-	chr1_4:46352084-46352103	None:intergenic	30.0%
GATAACCTTTGATTGATTGT+AGG	+	chr1_4:46352234-46352253	Msa0165650:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	46351010	46352501	46351010	ID=Msa0165650;Name=Msa0165650
chr1_4	mRNA	46351010	46352501	46351010	ID=Msa0165650-mRNA-1;Parent=Msa0165650;Name=Msa0165650-mRNA-1;_AED=0.02;_eAED=0.02;_QI=224\|1\|1\|1\|1\|1\|2\|307\|292
chr1_4	exon	46351010	46351669	46351010	ID=Msa0165650-mRNA-1:exon:13298;Parent=Msa0165650-mRNA-1
chr1_4	exon	46351752	46352501	46351752	ID=Msa0165650-mRNA-1:exon:13299;Parent=Msa0165650-mRNA-1
chr1_4	five_prime_UTR	46351010	46351233	46351010	ID=Msa0165650-mRNA-1:five_prime_utr;Parent=Msa0165650-mRNA-1
chr1_4	CDS	46351234	46351669	46351234	ID=Msa0165650-mRNA-1:cds;Parent=Msa0165650-mRNA-1
chr1_4	CDS	46351752	46352194	46351752	ID=Msa0165650-mRNA-1:cds;Parent=Msa0165650-mRNA-1
chr1_4	three_prime_UTR	46352195	46352501	46352195	ID=Msa0165650-mRNA-1:three_prime_utr;Parent=Msa0165650-mRNA-1

Gene Sequence

>Msa0165650

ATGGGTGTGCTTCCAAAGAGGATAATCCTAATGCGTCACGGCGAGTCACAAGGAAACCTTGACACGTCAGCATACACCACCACACCAGACCACAGCATTCAGTTAACTCCATCCGGCATCGCACAAGCCCGCCACGCCGGCGCCAATCTCCGCCGTCTCGTTTCCGGCCAAGGCTGCTCCCCTGATTGGCGTCTCTACTTCTACGTCTCTCCCTACGCCCGCACCCGGTCCACACTCCGTGAAGTTGGTAGATCTTTCTCCAAGAAGCGCGTGATCGGCGTCAGAGAAGAATCGCGCGTACGTGAACAGGATTTCGGTAACTTCCAAGTTCAAGAGCGTATGAAGATTGTTAAAGAAACTCGTGAACGGTTTGGGAGATTCTTTTATCGCTTTCCTGAAGGTGAATCCGCCGCCGATGTTTTCGATCGCATTTCTGGTTTTTTTGAATCTTTATGGAGAGACATTGATTTGAATCGTCTTCATCACGATCCAACTAACGATTTAAATCTGGTGATAGTATCACACGGATTAACATCACGAATTTTCTTGATGAAGTGGTTCAAGTGGACGGTGGAGCAATTTGAGCATCTAAACAATTTCGGAAACTGCGAGTTTCGGGTGATGGAGCAAGGGAGTGGTGGAGAATACAGTTTGGCGATTAATCATACGGAAGAAGAGATGCTTGAATGGGGAATGTCTCCGGATATGATTGCTGATCAGAAATGGCGTGCAGATGCGCCTAGAGGTGCTTGGAATGATCAATGTCCTTGGTATCTTGATGGTTTTTTTGATCGTTTTGCTGAAGATGAATCTGACGATGATGAAGCAATCCAAAATGAAGGTGAAACTGAAATGATAGTTGTTGAAACTAATAAGTAA

Protein sequence

>Msa0165650

MGVLPKRIILMRHGESQGNLDTSAYTTTPDHSIQLTPSGIAQARHAGANLRRLVSGQGCSPDWRLYFYVSPYARTRSTLREVGRSFSKKRVIGVREESRVREQDFGNFQVQERMKIVKETRERFGRFFYRFPEGESAADVFDRISGFFESLWRDIDLNRLHHDPTNDLNLVIVSHGLTSRIFLMKWFKWTVEQFEHLNNFGNCEFRVMEQGSGGEYSLAINHTEEEMLEWGMSPDMIADQKWRADAPRGAWNDQCPWYLDGFFDRFAEDESDDDEAIQNEGETEMIVVETNK*