AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0080210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080210 MtrunA17_Chr1g0192471 97.636 423 10 0 1 423 1 423 0.0 849
Msa0080210 MtrunA17_Chr7g0271971 85.071 422 61 2 1 422 1 420 0.0 716
Msa0080210 MtrunA17_Chr1g0209451 68.632 424 129 3 1 422 1 422 0.0 592
Msa0080210 MtrunA17_Chr1g0153671 56.341 410 177 2 14 423 11 418 2.55e-168 479
Msa0080210 MtrunA17_Chr7g0225501 62.442 434 138 13 1 422 19 439 1.54e-166 475
Msa0080210 MtrunA17_Chr3g0133801 55.556 414 175 3 14 422 10 419 4.71e-163 465
Msa0080210 MtrunA17_Chr2g0326251 64.486 214 61 8 109 317 7 210 9.30e-74 230
Msa0080210 MtrunA17_Chr1g0150451 31.449 283 155 12 25 298 72 324 1.77e-28 114
Msa0080210 MtrunA17_Chr3g0136711 30.924 249 144 9 57 298 54 281 3.25e-27 110
Msa0080210 MtrunA17_Chr1g0212961 31.673 281 155 14 25 299 90 339 1.33e-25 106
Msa0080210 MtrunA17_Chr3g0105351 29.779 272 163 11 33 297 64 314 3.95e-25 104
Msa0080210 MtrunA17_Chr3g0105371 30.037 273 161 10 33 297 88 338 5.89e-25 104
Msa0080210 MtrunA17_Chr5g0430481 28.625 269 164 11 36 297 127 374 1.70e-22 98.2
Msa0080210 MtrunA17_Chr8g0360351 30.043 233 139 8 68 295 66 279 3.18e-21 93.2
Msa0080210 MtrunA17_Chr2g0317021 29.572 257 152 11 46 297 100 332 3.32e-20 90.9
Msa0080210 MtrunA17_Chr4g0070871 27.365 296 159 10 46 297 220 503 5.92e-20 92.0
Msa0080210 MtrunA17_Chr3g0126511 29.020 255 152 9 46 295 108 338 2.31e-19 89.0
Msa0080210 MtrunA17_Chr4g0050381 27.698 278 168 10 27 295 21 274 3.89e-19 87.0
Msa0080210 MtrunA17_Chr1g0171571 31.301 246 136 7 69 299 419 646 5.55e-19 89.4
Msa0080210 MtrunA17_Chr3g0115851 29.032 279 163 11 27 295 26 279 2.91e-18 84.7
Msa0080210 MtrunA17_Chr5g0407161 26.894 264 153 9 67 314 123 362 3.75e-18 85.5
Msa0080210 MtrunA17_Chr2g0279151 25.818 275 177 9 27 295 25 278 3.78e-18 84.3
Msa0080210 MtrunA17_Chr5g0426141 29.137 278 164 12 27 295 26 279 8.99e-18 83.2
Msa0080210 MtrunA17_Chr5g0396731 29.524 210 123 7 66 265 105 299 2.11e-17 83.2
Msa0080210 MtrunA17_Chr1g0150781 30.712 267 137 10 69 299 291 545 9.52e-17 82.4
Msa0080210 MtrunA17_Chr6g0466641 87.805 41 5 0 1 41 1 41 1.04e-16 75.1
Msa0080210 MtrunA17_Chr4g0051661 29.921 254 150 10 46 295 166 395 1.19e-16 81.3
Msa0080210 MtrunA17_Chr3g0112291 29.032 217 122 6 62 261 117 318 1.75e-16 80.9
Msa0080210 MtrunA17_Chr2g0299981 25.857 321 162 10 40 297 228 535 2.59e-16 80.9
Msa0080210 MtrunA17_Chr8g0389921 29.442 197 118 6 69 258 199 381 3.02e-16 80.5
Msa0080210 MtrunA17_Chr4g0065141 29.762 252 132 10 65 295 121 348 4.28e-16 79.7
Msa0080210 MtrunA17_Chr2g0293811 31.373 255 131 11 64 295 96 329 6.41e-16 79.0
Msa0080210 MtrunA17_Chr6g0483411 28.053 303 165 13 26 295 34 316 6.72e-16 78.2
Msa0080210 MtrunA17_Chr3g0135961 27.574 272 149 8 62 297 280 539 1.06e-15 79.0
Msa0080210 MtrunA17_Chr7g0272061 33.898 177 95 9 116 276 165 335 1.08e-14 75.1
Msa0080210 MtrunA17_Chr1g0158781 31.048 248 138 9 69 297 146 379 1.16e-14 75.1
Msa0080210 MtrunA17_Chr5g0435721 28.019 207 123 7 69 262 224 417 4.53e-14 73.9
Msa0080210 MtrunA17_Chr7g0221691 30.403 273 142 14 36 283 139 388 9.10e-14 72.8
Msa0080210 MtrunA17_Chr6g0486661 27.517 298 167 14 36 297 97 381 1.92e-13 72.4
Msa0080210 MtrunA17_Chr3g0138281 27.969 261 145 9 67 308 120 356 1.97e-13 71.2
Msa0080210 MtrunA17_Chr4g0066371 31.126 302 148 19 36 297 59 340 5.11e-13 70.1
Msa0080210 MtrunA17_Chr5g0394181 27.907 258 140 11 66 297 360 597 1.04e-12 70.1
Msa0080210 MtrunA17_Chr4g0001761 34.043 141 66 5 128 257 156 280 3.65e-12 67.4
Msa0080210 MtrunA17_Chr2g0286951 27.431 288 163 12 43 297 67 341 3.82e-12 67.8
Msa0080210 MtrunA17_Chr8g0342431 30.189 159 94 7 136 283 201 353 3.30e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080210 AT1G09160.2 75.355 422 102 1 1 422 1 420 0.0 646
Msa0080210 AT1G09160.1 75.355 422 102 1 1 422 1 420 0.0 646
Msa0080210 AT1G68410.4 68.675 415 126 2 11 422 16 429 0.0 580
Msa0080210 AT1G68410.3 68.675 415 126 2 11 422 16 429 0.0 580
Msa0080210 AT1G68410.1 68.675 415 126 2 11 422 16 429 0.0 580
Msa0080210 AT1G68410.2 68.675 415 126 2 11 422 16 429 0.0 580
Msa0080210 AT1G47380.1 56.341 410 178 1 14 423 10 418 8.96e-170 483
Msa0080210 AT5G10740.1 30.921 304 168 13 6 298 8 280 4.19e-27 111
Msa0080210 AT5G10740.2 30.921 304 168 13 6 298 8 280 4.19e-27 111
Msa0080210 AT2G34740.1 33.054 239 136 8 65 298 116 335 7.79e-27 110
Msa0080210 AT1G07160.1 30.686 277 157 11 33 297 123 376 9.26e-26 108
Msa0080210 AT1G67820.2 32.787 244 139 10 34 270 78 303 1.18e-25 108
Msa0080210 AT1G67820.1 32.787 244 139 10 34 270 114 339 1.49e-25 108
Msa0080210 AT5G24940.1 30.877 285 154 13 25 298 28 280 1.64e-25 108
Msa0080210 AT4G31750.1 29.180 305 163 13 25 306 28 302 2.81e-25 105
Msa0080210 AT4G31750.3 29.180 305 163 13 25 306 28 302 2.81e-25 105
Msa0080210 AT4G31750.2 30.108 279 158 11 25 295 28 277 3.21e-25 105
Msa0080210 AT1G43900.1 31.970 269 148 14 36 295 124 366 3.92e-24 103
Msa0080210 AT1G22280.3 30.901 233 143 7 68 295 65 284 5.08e-24 101
Msa0080210 AT2G40180.1 28.269 283 183 8 21 297 117 385 8.70e-24 102
Msa0080210 AT1G34750.2 29.749 279 161 11 27 295 26 279 1.63e-23 100
Msa0080210 AT1G34750.1 29.749 279 161 11 27 295 26 279 1.63e-23 100
Msa0080210 AT1G34750.3 29.749 279 161 11 27 295 26 279 1.63e-23 100
Msa0080210 AT1G78200.1 30.357 280 161 11 27 295 24 280 1.88e-23 99.8
Msa0080210 AT1G78200.3 30.357 280 161 11 27 295 24 280 1.88e-23 99.8
Msa0080210 AT1G78200.2 30.357 280 161 11 27 295 24 280 1.88e-23 99.8
Msa0080210 AT1G78200.5 31.128 257 147 10 46 295 2 235 2.07e-23 98.6
Msa0080210 AT1G78200.4 31.128 257 147 10 46 295 2 235 2.07e-23 98.6
Msa0080210 AT4G28400.3 29.258 229 146 6 68 295 45 258 7.74e-23 97.4
Msa0080210 AT2G30020.1 28.782 271 163 11 36 297 143 392 9.64e-23 99.8
Msa0080210 AT5G53140.1 29.412 255 151 10 46 295 115 345 1.27e-22 99.8
Msa0080210 AT5G53140.2 29.412 255 151 10 46 295 115 345 1.27e-22 99.8
Msa0080210 AT4G28400.1 29.258 229 146 6 68 295 67 280 1.59e-22 97.1
Msa0080210 AT1G22280.1 30.901 233 137 8 68 295 65 278 3.75e-22 95.9
Msa0080210 AT2G20630.1 29.104 268 158 12 33 295 36 276 5.63e-22 95.5
Msa0080210 AT4G26080.1 27.737 274 149 7 61 299 165 424 1.61e-21 96.7
Msa0080210 AT2G20630.2 28.839 267 158 12 33 294 36 275 2.30e-21 94.0
Msa0080210 AT3G51470.2 28.475 295 169 11 36 314 32 300 5.64e-21 93.6
Msa0080210 AT3G51470.1 28.475 295 169 11 36 314 76 344 6.98e-21 94.0
Msa0080210 AT5G57050.2 28.464 267 145 9 65 297 117 371 4.42e-20 91.7
Msa0080210 AT5G57050.1 28.464 267 145 9 65 297 157 411 5.41e-20 92.0
Msa0080210 AT2G40860.1 29.286 280 157 9 36 299 396 650 1.48e-19 91.7
Msa0080210 AT2G25620.1 30.451 266 136 10 67 308 127 367 1.96e-19 90.1
Msa0080210 AT2G25620.2 30.451 266 136 10 67 308 127 367 1.96e-19 90.1
Msa0080210 AT2G40860.4 29.286 280 157 9 36 299 298 552 2.29e-19 90.9
Msa0080210 AT2G34740.3 29.665 209 127 5 65 270 112 303 2.86e-19 88.2
Msa0080210 AT2G34740.2 29.665 209 127 5 65 270 130 321 3.49e-19 88.6
Msa0080210 AT3G62260.3 29.771 262 148 12 67 307 26 272 4.68e-18 84.7
Msa0080210 AT2G40860.2 28.409 264 148 8 36 282 396 635 1.22e-17 85.9
Msa0080210 AT3G62260.1 29.771 262 148 12 67 307 115 361 1.63e-17 84.3
Msa0080210 AT3G62260.2 29.771 262 148 12 67 307 116 362 1.64e-17 84.3
Msa0080210 AT1G48040.1 32.692 260 129 12 63 295 107 347 2.08e-17 84.0
Msa0080210 AT3G15260.2 29.185 233 141 8 68 295 73 286 5.55e-17 81.3
Msa0080210 AT3G15260.1 29.185 233 141 8 68 295 73 286 5.55e-17 81.3
Msa0080210 AT1G34750.4 28.085 235 136 9 27 252 26 236 1.28e-16 79.3
Msa0080210 AT5G59220.1 28.287 251 150 10 31 265 107 343 3.00e-15 77.8
Msa0080210 AT4G28400.2 27.568 185 120 4 68 252 67 237 4.61e-15 75.1
Msa0080210 AT1G18030.1 29.020 255 135 10 69 295 110 346 5.01e-15 76.3
Msa0080210 AT1G07430.1 28.054 221 126 7 62 265 151 355 5.09e-14 73.9
Msa0080210 AT4G27800.1 24.848 330 173 12 40 322 67 368 1.00e-13 72.8
Msa0080210 AT3G11410.1 25.446 224 126 7 62 260 131 338 2.34e-12 68.6
Msa0080210 AT2G40860.3 29.114 237 127 8 36 255 396 608 3.05e-12 68.9
Msa0080210 AT1G16220.1 23.864 352 195 13 5 301 45 378 3.84e-12 68.2
Msa0080210 AT4G27800.3 26.119 268 134 9 40 265 67 312 3.84e-12 67.4
Msa0080210 AT3G17250.1 28.063 253 140 13 67 295 157 391 4.39e-12 67.8
Msa0080210 AT4G27800.2 26.119 268 134 9 40 265 67 312 4.44e-12 67.4
Msa0080210 AT5G27930.3 33.544 158 88 7 105 251 150 301 8.80e-12 66.2
Msa0080210 AT1G17550.1 27.434 226 120 8 69 265 238 448 1.22e-11 67.0
Msa0080210 AT1G17550.2 27.434 226 120 8 69 265 238 448 1.22e-11 67.0
Msa0080210 AT1G79630.2 29.798 198 121 6 131 314 151 344 1.41e-11 66.2
Msa0080210 AT1G79630.7 29.798 198 121 6 131 314 151 344 1.41e-11 66.2
Msa0080210 AT1G79630.6 29.500 200 123 6 131 316 111 306 1.67e-11 65.9
Msa0080210 AT1G79630.3 29.500 200 123 6 131 316 111 306 1.67e-11 65.9
Msa0080210 AT1G79630.4 29.500 200 123 6 131 316 111 306 1.67e-11 65.9
Msa0080210 AT1G79630.5 29.500 200 123 6 131 316 111 306 1.67e-11 65.9
Msa0080210 AT1G79630.8 29.500 200 123 6 131 316 217 412 1.72e-11 66.2
Msa0080210 AT1G79630.1 29.500 200 123 6 131 316 221 416 2.61e-11 65.9
Msa0080210 AT4G32950.1 30.114 176 110 5 131 297 138 309 4.43e-11 64.3
Msa0080210 AT5G51760.2 25.301 249 152 6 40 265 86 323 4.67e-11 64.7
Msa0080210 AT1G18030.2 30.288 208 104 9 69 253 110 299 4.71e-11 63.9
Msa0080210 AT5G36250.1 26.222 225 136 9 100 300 171 389 4.78e-11 64.7
Msa0080210 AT2G29380.1 27.928 222 132 8 59 265 103 311 5.04e-11 64.3
Msa0080210 AT5G51760.1 25.301 249 152 6 40 265 116 353 5.14e-11 64.7
Msa0080210 AT1G72770.4 25.090 279 143 11 69 297 239 501 5.61e-11 64.7
Msa0080210 AT1G72770.1 25.090 279 143 11 69 297 239 501 5.61e-11 64.7
Msa0080210 AT1G72770.3 25.090 279 143 11 69 297 239 501 5.61e-11 64.7
Msa0080210 AT2G25070.1 31.206 141 70 5 128 257 156 280 9.50e-11 63.5
Msa0080210 AT2G25070.2 31.206 141 70 5 128 257 156 280 9.50e-11 63.5

Find 138 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAGCTTCTGATGGAATT+TGG 0.123861 1_2:-58453064 Msa0080210:CDS
AGCACATTATGTTTCTTTCT+TGG 0.197447 1_2:+58452770 None:intergenic
GTTCCTTCCAATACAAATTC+TGG 0.255485 1_2:-58452137 Msa0080210:CDS
TGTTTCTTTCTTGGAGTTGC+TGG 0.268275 1_2:+58452779 None:intergenic
CTGTGCTCCCAACACCCATT+AGG 0.273813 1_2:-58454961 Msa0080210:five_prime_UTR
GTGCTTAGTTCACTTCTCTT+TGG 0.288508 1_2:-58452752 Msa0080210:CDS
GCAATGCTTGGTTCTACATT+TGG 0.316695 1_2:-58451866 Msa0080210:three_prime_UTR
TCACCTGCAGGGGAAACTTC+TGG 0.319705 1_2:-58453609 Msa0080210:intron
TATAGCTTCTGATGGAATTT+GGG 0.324404 1_2:-58453063 Msa0080210:CDS
ACTGTTGTTGCTCGGACTTC+AGG 0.329448 1_2:+58451956 None:intergenic
GCTACGTTTGTGATTATTGA+TGG 0.331297 1_2:-58453579 Msa0080210:CDS
TGTGCTCCCAACACCCATTA+GGG 0.343384 1_2:-58454960 Msa0080210:five_prime_UTR
CCGTTACAGTTGCATCTGTT+GGG 0.351128 1_2:-58453551 Msa0080210:CDS
CAATGCTTGGTTCTACATTT+GGG 0.352020 1_2:-58451865 Msa0080210:three_prime_UTR
ACAGATTGCCATAGAGTTCC+TGG 0.368715 1_2:-58454229 Msa0080210:CDS
ACTTGCTTAACATGTGGTAT+TGG 0.372029 1_2:+58453220 None:intergenic
TGCTGCCAAGCTGGTGGTTA+AGG 0.391611 1_2:-58452985 Msa0080210:intron
TAATTTGCAACAACCTTCAA+TGG 0.406917 1_2:+58451779 None:intergenic
TATATTGATTTGATTGATAA+CGG 0.408391 1_2:-58451614 Msa0080210:three_prime_UTR
AAGACGCCATGGAAGGAAAA+AGG 0.416517 1_2:-58451980 Msa0080210:CDS
CAGATCCTTGACGGGCATAA+TGG 0.417208 1_2:-58453857 Msa0080210:CDS
GGTTGAGAATTGAGTTAGCT+AGG 0.417286 1_2:-58451808 Msa0080210:three_prime_UTR
GGGCCTCTTCGCTGTTGGCC+TGG 0.420476 1_2:-58453298 Msa0080210:CDS
AACCTGAACAGGAAGCTCTA+AGG 0.420809 1_2:-58452877 Msa0080210:intron
TTTGGCTTGTGCTCAGCTGT+TGG 0.425707 1_2:-58451753 Msa0080210:three_prime_UTR
GTAGGAAGACTCAACGTATT+CGG 0.426631 1_2:-58453414 Msa0080210:CDS
GTTTCCTAGCTTTCAAATGC+TGG 0.427993 1_2:-58453098 Msa0080210:intron
CTTGATTGGCAGATCCTTGA+CGG 0.435403 1_2:-58453866 Msa0080210:intron
TGGAAGAAAATGTAGAAGAG+AGG 0.437691 1_2:-58453464 Msa0080210:CDS
GTGAATACCAGAATTTGTAT+TGG 0.439513 1_2:+58452130 None:intergenic
CTTAAAATGCAGGCTAGGTA+AGG 0.443855 1_2:-58452162 Msa0080210:intron
ATGGCTTCAAGCACTGCCTC+GGG 0.448779 1_2:-58453753 Msa0080210:CDS
ACTAATAAGCTTTCTGCAGT+TGG 0.455037 1_2:-58452698 Msa0080210:CDS
TCGTAGCTCACGGCCGATCA+AGG 0.456909 1_2:+58454333 None:intergenic
GGATACTTTGTCTTCTGATA+CGG 0.461894 1_2:-58453042 Msa0080210:CDS
AATGGCTTCAAGCACTGCCT+CGG 0.462446 1_2:-58453754 Msa0080210:CDS
ATCGGCCGTGAGCTACGAAA+TGG 0.463670 1_2:-58454328 Msa0080210:CDS
GTTCCGTTGGCAACCTTGAT+CGG 0.465033 1_2:-58454346 Msa0080210:CDS
CCATACCGCAAGGTGTAAGC+AGG 0.465666 1_2:-58453781 Msa0080210:CDS
AGAATTGAGTTAGCTAGGTT+AGG 0.469351 1_2:-58451803 Msa0080210:three_prime_UTR
AAGAATCGCCAGGAACTCTA+TGG 0.471757 1_2:+58454221 None:intergenic
GCCTGTCCATACTTCACAAA+AGG 0.476504 1_2:+58454292 None:intergenic
TTTCTTGGAGTTGCTGGCAT+CGG 0.478380 1_2:+58452785 None:intergenic
GAAGTATGGACAGGCTGGTT+TGG 0.479502 1_2:-58454284 Msa0080210:CDS
GTGGAGGAGTTATTTGAAGA+GGG 0.481037 1_2:-58452671 Msa0080210:CDS
CTGGGTATCTAATATGCATC+GGG 0.481436 1_2:+58453524 None:intergenic
ACCGTTACAGTTGCATCTGT+TGG 0.483048 1_2:-58453552 Msa0080210:CDS
TGCAGAACTTGCTGCCAAGC+TGG 0.486136 1_2:-58452994 Msa0080210:CDS
CCTGCTTACACCTTGCGGTA+TGG 0.486759 1_2:+58453781 None:intergenic
TCTTCCTACTTCACCACCAC+TGG 0.489968 1_2:+58453428 None:intergenic
AATAATATCTACAACAAGGC+AGG 0.494608 1_2:+58452829 None:intergenic
GCTTTCTGCAGTTGGTATTG+TGG 0.496447 1_2:-58452690 Msa0080210:CDS
AGCTAGGTTAGGTCCATTGA+AGG 0.499451 1_2:-58451792 Msa0080210:three_prime_UTR
TGACAGTTTGTGCAGAGGAA+TGG 0.499633 1_2:+58452011 None:intergenic
CCTTCCCATGGCTTAGATAC+CGG 0.499863 1_2:+58452035 None:intergenic
TGCCTAGCAGATCAACCATC+TGG 0.501426 1_2:-58452095 Msa0080210:CDS
TTTGTGAAGTATGGACAGGC+TGG 0.503204 1_2:-58454289 Msa0080210:CDS
AAAATGTAGAAGAGAGGGAG+CGG 0.505425 1_2:-58453458 Msa0080210:CDS
CGTTTGTGATTATTGATGGA+TGG 0.510062 1_2:-58453575 Msa0080210:CDS
AGAGAGAAACAACACCTCCC+TGG 0.510635 1_2:+58453505 None:intergenic
TTGGCAGTGTGAGCAATGCT+TGG 0.513571 1_2:-58451878 Msa0080210:three_prime_UTR
TTCTGCAGTTGGTATTGTGG+AGG 0.515246 1_2:-58452687 Msa0080210:CDS
AGCTTGGCAGCAAGTTCTGC+AGG 0.516289 1_2:+58452996 None:intergenic
AGGTAGGGCCTCTTCGCTGT+TGG 0.519693 1_2:-58453303 Msa0080210:CDS
ACAGCCAGTGGTGGTGAAGT+AGG 0.520024 1_2:-58453432 Msa0080210:CDS
CGTTACAGTTGCATCTGTTG+GGG 0.531574 1_2:-58453550 Msa0080210:CDS
TTGATTGGCAGATCCTTGAC+GGG 0.533037 1_2:-58453865 Msa0080210:intron
GAAGCAACCACTTGTTCCGT+TGG 0.533409 1_2:-58454359 Msa0080210:CDS
TGAGTAAGACTGAATTATCA+AGG 0.534598 1_2:-58454384 Msa0080210:CDS
ATAAAATGATCGGTGTTCAC+TGG 0.535304 1_2:+58452062 None:intergenic
CCTCTTCGCTGTTGGCCTGG+TGG 0.536837 1_2:-58453295 Msa0080210:CDS
AAATGTAGAAGAGAGGGAGC+GGG 0.539423 1_2:-58453457 Msa0080210:CDS
TGTGGAGGAGTTATTTGAAG+AGG 0.540145 1_2:-58452672 Msa0080210:CDS
AATGACGTTGAAGAATCGCC+AGG 0.544088 1_2:+58454211 None:intergenic
CCTGGGTATCTAATATGCAT+CGG 0.544206 1_2:+58453523 None:intergenic
ATACCAGAATTTGTATTGGA+AGG 0.544653 1_2:+58452134 None:intergenic
TCCTCCCTGCTTACACCTTG+CGG 0.545928 1_2:+58453776 None:intergenic
TCACTCCGGTATCTAAGCCA+TGG 0.550001 1_2:-58452040 Msa0080210:CDS
AGACTAATTATAGCTTCTGA+TGG 0.551958 1_2:-58453071 Msa0080210:CDS
TCTAAGGTCAAGAGGGCTGA+AGG 0.552829 1_2:-58452861 Msa0080210:CDS
TGTCACCAATCGATCTAGAA+AGG 0.554127 1_2:+58453266 None:intergenic
GAGAGAAACAACACCTCCCT+GGG 0.554466 1_2:+58453506 None:intergenic
AGGGAGCGGGTTACAGCCAG+TGG 0.559334 1_2:-58453444 Msa0080210:CDS
GGAAGAAAATGTAGAAGAGA+GGG 0.560448 1_2:-58453463 Msa0080210:CDS
CACTCCGGTATCTAAGCCAT+GGG 0.564768 1_2:-58452039 Msa0080210:CDS
AAGGTGTAAGCAGGGAGGAA+TGG 0.566433 1_2:-58453772 Msa0080210:CDS
CTAGAAAGGCACAATCCACC+AGG 0.566834 1_2:+58453280 None:intergenic
CCGATGCATATTAGATACCC+AGG 0.567386 1_2:-58453523 Msa0080210:CDS
TCTTCTGACAGTTTGTGCAG+AGG 0.570739 1_2:+58452006 None:intergenic
TTGTGCCTTTCTAGATCGAT+TGG 0.574242 1_2:-58453271 Msa0080210:CDS
CACCAGATGGTTGATCTGCT+AGG 0.577655 1_2:+58452093 None:intergenic
AGGTACACCACGACATGACT+TGG 0.578313 1_2:+58453016 None:intergenic
CAGGAAGCTCTAAGGTCAAG+AGG 0.580501 1_2:-58452869 Msa0080210:CDS
GTTGCTGGCATCGGCAACAC+AGG 0.580752 1_2:+58452794 None:intergenic
ACCTTCACTTGCTTAACATG+TGG 0.582513 1_2:+58453214 None:intergenic
CAGAGGAATGGACCTTCCCA+TGG 0.585428 1_2:+58452023 None:intergenic
TCTCAAAACTCGACAAACAA+AGG 0.587947 1_2:-58452722 Msa0080210:CDS
TGCTTGGTTCTACATTTGGG+TGG 0.590730 1_2:-58451862 Msa0080210:three_prime_UTR
ATAACTATACTGTTGTTGCT+CGG 0.593054 1_2:+58451948 None:intergenic
CTTGACAGTTGATCACAGAC+TGG 0.593422 1_2:-58453484 Msa0080210:CDS
AAGAAGAAAGACGCCATGGA+AGG 0.594109 1_2:-58451987 Msa0080210:CDS
ATCGATTGGTGACACCGATG+TGG 0.601496 1_2:-58453257 Msa0080210:CDS
GCAGATCAACCATCTGGTGA+TGG 0.602774 1_2:-58452089 Msa0080210:CDS
AAGCATTGCTCACACTGCCA+AGG 0.610583 1_2:+58451880 None:intergenic
TACCGGAGTGATAAAATGAT+CGG 0.613081 1_2:+58452052 None:intergenic
CATCACCTTAACCACCAGCT+TGG 0.613564 1_2:+58452980 None:intergenic
GAAATGTTGACTTATAAACT+AGG 0.614349 1_2:-58454408 Msa0080210:five_prime_UTR
CCACCAGGCCAACAGCGAAG+AGG 0.616089 1_2:+58453295 None:intergenic
TCGATTGGTGACACCGATGT+GGG 0.617709 1_2:-58453256 Msa0080210:CDS
AAGGTTGCCAACGGAACAAG+TGG 0.618923 1_2:+58454352 None:intergenic
ATATACCATTATGCCCGTCA+AGG 0.625718 1_2:+58453852 None:intergenic
GAGCGGGTTACAGCCAGTGG+TGG 0.626341 1_2:-58453441 Msa0080210:CDS
AGGAAGCTCTAAGGTCAAGA+GGG 0.627250 1_2:-58452868 Msa0080210:CDS
ACCACATGTTAAGCAAGTGA+AGG 0.627901 1_2:-58453215 Msa0080210:intron
GTCATGAGTGCCATACCGCA+AGG 0.630194 1_2:-58453791 Msa0080210:CDS
TCAGAAGAAGAAAGACGCCA+TGG 0.630309 1_2:-58451991 Msa0080210:CDS
CCCAACAGATGCAACTGTAA+CGG 0.630410 1_2:+58453551 None:intergenic
CGGCCGATCAAGGTTGCCAA+CGG 0.631386 1_2:+58454343 None:intergenic
TCCTAGCTTTCAAATGCTGG+CGG 0.631854 1_2:-58453095 Msa0080210:intron
CCGGTATCTAAGCCATGGGA+AGG 0.632107 1_2:-58452035 Msa0080210:CDS
TACAGAAATGTTGTATACAG+AGG 0.632924 1_2:+58455022 None:intergenic
GGCAACACAGGATAGTCTGA+AGG 0.635849 1_2:+58452806 None:intergenic
AAAGCGACAACTAGAGCCCG+AGG 0.640273 1_2:+58453737 None:intergenic
CAACGTATTCGGAGGCAATG+AGG 0.642352 1_2:-58453403 Msa0080210:intron
CGATGCATATTAGATACCCA+GGG 0.643134 1_2:-58453522 Msa0080210:CDS
ACTGGTAAACCATCACCAGA+TGG 0.656343 1_2:+58452080 None:intergenic
AAGTGTGTGTGTGACAAATG+AGG 0.666861 1_2:-58451829 Msa0080210:three_prime_UTR
CATACCGCAAGGTGTAAGCA+GGG 0.674683 1_2:-58453780 Msa0080210:CDS
GGAAGACTCAACGTATTCGG+AGG 0.678380 1_2:-58453411 Msa0080210:CDS
AACGATATACTCTCCCACAT+CGG 0.681964 1_2:+58453243 None:intergenic
AGAACTTGCTGCCAAGCTGG+TGG 0.683075 1_2:-58452991 Msa0080210:CDS
ACGGCTGCCAAGTCATGTCG+TGG 0.691102 1_2:-58453023 Msa0080210:CDS
TGTTGTATACAGAGGAAACG+CGG 0.694406 1_2:+58455030 None:intergenic
AAGGAATAATATCTACAACA+AGG 0.708500 1_2:+58452825 None:intergenic
ACCGCAAGGTGTAAGCAGGG+AGG 0.718559 1_2:-58453777 Msa0080210:CDS
GTTCTGCAATGCTTACAGAG+AGG 0.751165 1_2:-58452649 Msa0080210:intron
TGCATATTAGATACCCAGGG+AGG 0.753250 1_2:-58453519 Msa0080210:CDS
CTGCTAGGCAAACTGCACAG+CGG 0.759343 1_2:+58452108 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATGAATAATTGTTTTTTA+AGG + chr1_2:58451631-58451650 None:intergenic 10.0%
!! ATAAAAAGATAAATAAAATC+TGG + chr1_2:58451868-58451887 None:intergenic 10.0%
!!! ATAAATATATTGATTTTGTT+TGG - chr1_2:58452253-58452272 Msa0080210:intron 10.0%
!!! TTGAAAATGCATTTTATAAA+TGG - chr1_2:58454257-58454276 Msa0080210:CDS 15.0%
!!! TCAATTTTTACTTTTTACAT+CGG + chr1_2:58454442-58454461 None:intergenic 15.0%
!!! ATATTTGTATAATTTTTCCT+TGG - chr1_2:58454805-58454824 Msa0080210:intron 15.0%
!!! TATATTGATTTGATTGATAA+CGG - chr1_2:58455088-58455107 Msa0080210:five_prime_UTR 15.0%
!!! CTATGATTAATTTGATTCTA+TGG - chr1_2:58452069-58452088 Msa0080210:CDS 20.0%
!! ATAAGATCTTATGAATGAAT+TGG - chr1_2:58452651-58452670 Msa0080210:CDS 20.0%
!! TAAGGAAGAAATTATATGAA+AGG + chr1_2:58453350-58453369 None:intergenic 20.0%
!!! TTTTGGTTCCTTAATATTTT+AGG - chr1_2:58453379-58453398 Msa0080210:intron 20.0%
!! AAGAACTACTAAACTTTAAA+AGG + chr1_2:58454121-58454140 None:intergenic 20.0%
!!! CATTTGATTATGAATCTTTT+TGG + chr1_2:58454384-58454403 None:intergenic 20.0%
!!! TTTTTGTTTTCTTAAAATGC+AGG - chr1_2:58454530-58454549 Msa0080210:intron 20.0%
!!! TTAACATTACACTTTTTGTT+TGG - chr1_2:58455057-58455076 Msa0080210:five_prime_UTR 20.0%
! AAATGAAGAAGAAAAACTCA+CGG + chr1_2:58451829-58451848 None:intergenic 25.0%
!! AGAATGTTGATTATTATAGC+TGG + chr1_2:58452014-58452033 None:intergenic 25.0%
! AATTTGATTCTATGGAAGTA+AGG - chr1_2:58452077-58452096 Msa0080210:CDS 25.0%
!! TAGATCTATTAAGAGTCTTT+TGG - chr1_2:58452210-58452229 Msa0080210:intron 25.0%
!!! TTGATTTTGTTTGGATGATT+AGG - chr1_2:58452262-58452281 Msa0080210:intron 25.0%
!!! GAAATGTTGACTTATAAACT+AGG - chr1_2:58452294-58452313 Msa0080210:intron 25.0%
! ATTGATATCATAACCATTGT+GGG + chr1_2:58452808-58452827 None:intergenic 25.0%
! TATTGATATCATAACCATTG+TGG + chr1_2:58452809-58452828 None:intergenic 25.0%
! CAATGGTTATGATATCAATA+AGG - chr1_2:58452809-58452828 Msa0080210:CDS 25.0%
! ATCAATAAGGAATTCTTGAT+TGG - chr1_2:58452822-58452841 Msa0080210:CDS 25.0%
!! AGTTTTCTTTGTATCCTTAT+TGG - chr1_2:58453030-58453049 Msa0080210:CDS 25.0%
!! TAAAATTTAATTTCACCTGC+AGG - chr1_2:58453081-58453100 Msa0080210:CDS 25.0%
!! AAAATTTAATTTCACCTGCA+GGG - chr1_2:58453082-58453101 Msa0080210:CDS 25.0%
!!! GTTCCTTAATATTTTAGGTA+GGG - chr1_2:58453384-58453403 Msa0080210:intron 25.0%
! AAGGAATAATATCTACAACA+AGG + chr1_2:58453880-58453899 None:intergenic 25.0%
! TGATTGGAACAAAAATGTTT+AGG - chr1_2:58454160-58454179 Msa0080210:intron 25.0%
! GATTGGAACAAAAATGTTTA+GGG - chr1_2:58454161-58454180 Msa0080210:intron 25.0%
!!! GGTTGTTGCAAATTATTTTT+TGG - chr1_2:58454931-58454950 Msa0080210:five_prime_UTR 25.0%
TACAGAAATGTTGTATACAG+AGG + chr1_2:58451683-58451702 None:intergenic 30.0%
AAGAGTTGAAAAACCCTAAT+GGG + chr1_2:58451758-58451777 None:intergenic 30.0%
!! CAGAATTTTGAGTATGAGAA+AGG + chr1_2:58451783-58451802 None:intergenic 30.0%
AATGAAGAAGAAAAACTCAC+GGG + chr1_2:58451828-58451847 None:intergenic 30.0%
AGTATCTTAGCTTAGTTAGT+TGG - chr1_2:58451937-58451956 Msa0080210:three_prime_UTR 30.0%
! TTTTGTACTTCTAGACTCAA+TGG - chr1_2:58452141-58452160 Msa0080210:CDS 30.0%
TGAGTAAGACTGAATTATCA+AGG - chr1_2:58452318-58452337 Msa0080210:intron 30.0%
TTAGTGAAATGTTTGATGAG+AGG - chr1_2:58452593-58452612 Msa0080210:intron 30.0%
!! TTTGATGAGAGGTATTTGAT+TGG - chr1_2:58452604-58452623 Msa0080210:intron 30.0%
TAAGAAAGATACATTCCCTT+TGG + chr1_2:58452699-58452718 None:intergenic 30.0%
AAAGGGAATGTATCTTTCTT+AGG - chr1_2:58452698-58452717 Msa0080210:CDS 30.0%
GACATGGAATTTCAGAAAAA+AGG - chr1_2:58452998-58453017 Msa0080210:CDS 30.0%
! AAATTTAATTTCACCTGCAG+GGG - chr1_2:58453083-58453102 Msa0080210:CDS 30.0%
!!! CTTCCTTATCTAACTTGTTT+TGG - chr1_2:58453362-58453381 Msa0080210:intron 30.0%
GAACCAAAACAAGTTAGATA+AGG + chr1_2:58453368-58453387 None:intergenic 30.0%
!! GGTTCCTTAATATTTTAGGT+AGG - chr1_2:58453383-58453402 Msa0080210:intron 30.0%
GTAAACACCTTCACATAAAA+GGG + chr1_2:58453549-58453568 None:intergenic 30.0%
AGTAAACACCTTCACATAAA+AGG + chr1_2:58453550-58453569 None:intergenic 30.0%
AGACTAATTATAGCTTCTGA+TGG - chr1_2:58453631-58453650 Msa0080210:intron 30.0%
TTATAGCTTCTGATGGAATT+TGG - chr1_2:58453638-58453657 Msa0080210:intron 30.0%
TATAGCTTCTGATGGAATTT+GGG - chr1_2:58453639-58453658 Msa0080210:intron 30.0%
GAATTCAAGTCTCATTATGT+TGG - chr1_2:58453776-58453795 Msa0080210:CDS 30.0%
!!! TCTATTGTTTTAACCTGAAC+AGG - chr1_2:58453814-58453833 Msa0080210:CDS 30.0%
AATAATATCTACAACAAGGC+AGG + chr1_2:58453876-58453895 None:intergenic 30.0%
AGCACATTATGTTTCTTTCT+TGG + chr1_2:58453935-58453954 None:intergenic 30.0%
!! AACTAGAGAAAGTGCATTTT+CGG + chr1_2:58454336-58454355 None:intergenic 30.0%
!!! ATGTCCTTATTTTCCCATTT+TGG - chr1_2:58454483-58454502 Msa0080210:intron 30.0%
!!! TGTCCTTATTTTCCCATTTT+GGG - chr1_2:58454484-58454503 Msa0080210:intron 30.0%
ATACCAGAATTTGTATTGGA+AGG + chr1_2:58454571-58454590 None:intergenic 30.0%
GTGAATACCAGAATTTGTAT+TGG + chr1_2:58454575-58454594 None:intergenic 30.0%
ATAACTATACTGTTGTTGCT+CGG + chr1_2:58454757-58454776 None:intergenic 30.0%
! TAATTTGCAACAACCTTCAA+TGG + chr1_2:58454926-58454945 None:intergenic 30.0%
! TTTGCTCTCTGATTTTCGAT+TGG + chr1_2:58451706-58451725 None:intergenic 35.0%
GAAGAGTTGAAAAACCCTAA+TGG + chr1_2:58451759-58451778 None:intergenic 35.0%
ATGAGCACTATAGTGAAACA+TGG + chr1_2:58452108-58452127 None:intergenic 35.0%
TCTACGCATGTTGAGTAAAT+TGG + chr1_2:58452194-58452213 None:intergenic 35.0%
! TTTTTCCATTTCGTAGCTCA+CGG + chr1_2:58452382-58452401 None:intergenic 35.0%
TGAGCTACGAAATGGAAAAA+CGG - chr1_2:58452382-58452401 Msa0080210:intron 35.0%
!! AACGTCATTTTCTGTTTTCG+CGG - chr1_2:58452505-58452524 Msa0080210:intron 35.0%
! ACATTTTCTCAGTGATCAAG+TGG - chr1_2:58452768-58452787 Msa0080210:CDS 35.0%
GCTACGTTTGTGATTATTGA+TGG - chr1_2:58453123-58453142 Msa0080210:intron 35.0%
CGTTTGTGATTATTGATGGA+TGG - chr1_2:58453127-58453146 Msa0080210:intron 35.0%
TGGAAGAAAATGTAGAAGAG+AGG - chr1_2:58453238-58453257 Msa0080210:CDS 35.0%
GGAAGAAAATGTAGAAGAGA+GGG - chr1_2:58453239-58453258 Msa0080210:CDS 35.0%
AGGCCCTACCTAAAATATTA+AGG + chr1_2:58453390-58453409 None:intergenic 35.0%
ACTTGCTTAACATGTGGTAT+TGG + chr1_2:58453485-58453504 None:intergenic 35.0%
!!! GTGAGTTGGTTTCATTTTCA+TGG - chr1_2:58453509-58453528 Msa0080210:CDS 35.0%
!! TTCTAAAGTTCAATGCTCAC+TGG - chr1_2:58453569-58453588 Msa0080210:CDS 35.0%
AAAGCTAGGAAACAAATCAG+GGG + chr1_2:58453597-58453616 None:intergenic 35.0%
GAAAGCTAGGAAACAAATCA+GGG + chr1_2:58453598-58453617 None:intergenic 35.0%
TGAAAGCTAGGAAACAAATC+AGG + chr1_2:58453599-58453618 None:intergenic 35.0%
GGATACTTTGTCTTCTGATA+CGG - chr1_2:58453660-58453679 Msa0080210:intron 35.0%
! GTTAAGGTGATGGTTATTTG+TGG - chr1_2:58453733-58453752 Msa0080210:CDS 35.0%
!!! GGCAGTGTTCTTATTTTTTG+AGG - chr1_2:58453754-58453773 Msa0080210:CDS 35.0%
TCTCAAAACTCGACAAACAA+AGG - chr1_2:58453980-58453999 Msa0080210:intron 35.0%
ACTAATAAGCTTTCTGCAGT+TGG - chr1_2:58454004-58454023 Msa0080210:intron 35.0%
! TTCCAATCACTTGTTGATGA+TGG + chr1_2:58454149-58454168 None:intergenic 35.0%
! TGTTTAGGGTCTGTTTACTT+CGG - chr1_2:58454175-58454194 Msa0080210:intron 35.0%
ACACCCAAAATGGGAAAATA+AGG + chr1_2:58454490-58454509 None:intergenic 35.0%
CACATGAATACACCCAAAAT+GGG + chr1_2:58454499-58454518 None:intergenic 35.0%
ACACATGAATACACCCAAAA+TGG + chr1_2:58454500-58454519 None:intergenic 35.0%
! GTTTTCTTAAAATGCAGGCT+AGG - chr1_2:58454535-58454554 Msa0080210:intron 35.0%
GTTCCTTCCAATACAAATTC+TGG - chr1_2:58454565-58454584 Msa0080210:intron 35.0%
! ATAAAATGATCGGTGTTCAC+TGG + chr1_2:58454643-58454662 None:intergenic 35.0%
TACCGGAGTGATAAAATGAT+CGG + chr1_2:58454653-58454672 None:intergenic 35.0%
!! CAATGCTTGGTTCTACATTT+GGG - chr1_2:58454837-58454856 Msa0080210:intron 35.0%
AGAATTGAGTTAGCTAGGTT+AGG - chr1_2:58454899-58454918 Msa0080210:five_prime_UTR 35.0%
TGTTGTATACAGAGGAAACG+CGG + chr1_2:58451675-58451694 None:intergenic 40.0%
! GAAAAACCCTAATGGGTGTT+GGG + chr1_2:58451751-58451770 None:intergenic 40.0%
! TGAAAAACCCTAATGGGTGT+TGG + chr1_2:58451752-58451771 None:intergenic 40.0%
! GAGAAGCCTTTTGTGAAGTA+TGG - chr1_2:58452404-58452423 Msa0080210:intron 40.0%
! TCATTTTCTGTTTTCGCGGT+AGG - chr1_2:58452509-58452528 Msa0080210:intron 40.0%
GCGTCAATTTATTCCCACAA+TGG - chr1_2:58452792-58452811 Msa0080210:CDS 40.0%
ATATACCATTATGCCCGTCA+AGG + chr1_2:58452853-58452872 None:intergenic 40.0%
TTCCTTCGCAAAAATAGCAG+CGG + chr1_2:58452876-58452895 None:intergenic 40.0%
! CGCTTTTGTGAAAACTGACA+TGG - chr1_2:58452982-58453001 Msa0080210:intron 40.0%
GAACAAGTACAGCTCCAATA+AGG + chr1_2:58453047-58453066 None:intergenic 40.0%
CTGGGTATCTAATATGCATC+GGG + chr1_2:58453181-58453200 None:intergenic 40.0%
CCTGGGTATCTAATATGCAT+CGG + chr1_2:58453182-58453201 None:intergenic 40.0%
CGATGCATATTAGATACCCA+GGG - chr1_2:58453180-58453199 Msa0080210:intron 40.0%
AAAATGTAGAAGAGAGGGAG+CGG - chr1_2:58453244-58453263 Msa0080210:CDS 40.0%
GTAGGAAGACTCAACGTATT+CGG - chr1_2:58453288-58453307 Msa0080210:CDS 40.0%
TTGTGCCTTTCTAGATCGAT+TGG - chr1_2:58453431-58453450 Msa0080210:CDS 40.0%
TGTCACCAATCGATCTAGAA+AGG + chr1_2:58453439-58453458 None:intergenic 40.0%
AACGATATACTCTCCCACAT+CGG + chr1_2:58453462-58453481 None:intergenic 40.0%
ACCACATGTTAAGCAAGTGA+AGG - chr1_2:58453487-58453506 Msa0080210:CDS 40.0%
ACCTTCACTTGCTTAACATG+TGG + chr1_2:58453491-58453510 None:intergenic 40.0%
TTAAGCAAGTGAAGGTGAGT+TGG - chr1_2:58453495-58453514 Msa0080210:CDS 40.0%
! CTAGTGACCCTTTTATGTGA+AGG - chr1_2:58453539-58453558 Msa0080210:CDS 40.0%
! GTTTCCTAGCTTTCAAATGC+TGG - chr1_2:58453604-58453623 Msa0080210:intron 40.0%
TGTTTCTTTCTTGGAGTTGC+TGG + chr1_2:58453926-58453945 None:intergenic 40.0%
GTGCTTAGTTCACTTCTCTT+TGG - chr1_2:58453950-58453969 Msa0080210:intron 40.0%
TGTGGAGGAGTTATTTGAAG+AGG - chr1_2:58454030-58454049 Msa0080210:intron 40.0%
GTGGAGGAGTTATTTGAAGA+GGG - chr1_2:58454031-58454050 Msa0080210:intron 40.0%
TGCCATCATCAACAAGTGAT+TGG - chr1_2:58454144-58454163 Msa0080210:intron 40.0%
! GTTTAGGGTCTGTTTACTTC+GGG - chr1_2:58454176-58454195 Msa0080210:intron 40.0%
CTGTCATTGAGAGAACATGA+AGG + chr1_2:58454361-58454380 None:intergenic 40.0%
!!! TTACTTTTTACATCGGCAGC+TGG + chr1_2:58454435-58454454 None:intergenic 40.0%
CTTAAAATGCAGGCTAGGTA+AGG - chr1_2:58454540-58454559 Msa0080210:intron 40.0%
! CACCGATCATTTTATCACTC+CGG - chr1_2:58454648-58454667 Msa0080210:intron 40.0%
!! GCAATGCTTGGTTCTACATT+TGG - chr1_2:58454836-58454855 Msa0080210:intron 40.0%
AAGTGTGTGTGTGACAAATG+AGG - chr1_2:58454873-58454892 Msa0080210:intron 40.0%
GGTTGAGAATTGAGTTAGCT+AGG - chr1_2:58454894-58454913 Msa0080210:intron 40.0%
! GCCTTTTGTGAAGTATGGAC+AGG - chr1_2:58452409-58452428 Msa0080210:intron 45.0%
GCCTGTCCATACTTCACAAA+AGG + chr1_2:58452413-58452432 None:intergenic 45.0%
TTTGTGAAGTATGGACAGGC+TGG - chr1_2:58452413-58452432 Msa0080210:intron 45.0%
!! CAGGCTGGTTTGGCAAAAAA+AGG - chr1_2:58452428-58452447 Msa0080210:intron 45.0%
ACAGATTGCCATAGAGTTCC+TGG - chr1_2:58452473-58452492 Msa0080210:intron 45.0%
AAGAATCGCCAGGAACTCTA+TGG + chr1_2:58452484-58452503 None:intergenic 45.0%
AATGACGTTGAAGAATCGCC+AGG + chr1_2:58452494-58452513 None:intergenic 45.0%
TTCTGCTTCGAGAGACCAAA+GGG - chr1_2:58452681-58452700 Msa0080210:CDS 45.0%
CTTGATTGGCAGATCCTTGA+CGG - chr1_2:58452836-58452855 Msa0080210:CDS 45.0%
TTGATTGGCAGATCCTTGAC+GGG - chr1_2:58452837-58452856 Msa0080210:CDS 45.0%
!!! ATCCGCTGCTATTTTTGCGA+AGG - chr1_2:58452871-58452890 Msa0080210:intron 45.0%
ACCGTTACAGTTGCATCTGT+TGG - chr1_2:58453150-58453169 Msa0080210:intron 45.0%
CCCAACAGATGCAACTGTAA+CGG + chr1_2:58453154-58453173 None:intergenic 45.0%
CCGTTACAGTTGCATCTGTT+GGG - chr1_2:58453151-58453170 Msa0080210:intron 45.0%
CGTTACAGTTGCATCTGTTG+GGG - chr1_2:58453152-58453171 Msa0080210:intron 45.0%
CCGATGCATATTAGATACCC+AGG - chr1_2:58453179-58453198 Msa0080210:intron 45.0%
TGCATATTAGATACCCAGGG+AGG - chr1_2:58453183-58453202 Msa0080210:intron 45.0%
CTTGACAGTTGATCACAGAC+TGG - chr1_2:58453218-58453237 Msa0080210:CDS 45.0%
AAATGTAGAAGAGAGGGAGC+GGG - chr1_2:58453245-58453264 Msa0080210:CDS 45.0%
! TCCTAGCTTTCAAATGCTGG+CGG - chr1_2:58453607-58453626 Msa0080210:intron 45.0%
AACCTGAACAGGAAGCTCTA+AGG - chr1_2:58453825-58453844 Msa0080210:CDS 45.0%
!! AGGAAGCTCTAAGGTCAAGA+GGG - chr1_2:58453834-58453853 Msa0080210:CDS 45.0%
TTTCTTGGAGTTGCTGGCAT+CGG + chr1_2:58453920-58453939 None:intergenic 45.0%
! GCTTTCTGCAGTTGGTATTG+TGG - chr1_2:58454012-58454031 Msa0080210:intron 45.0%
! TTCTGCAGTTGGTATTGTGG+AGG - chr1_2:58454015-58454034 Msa0080210:intron 45.0%
GTTCTGCAATGCTTACAGAG+AGG - chr1_2:58454053-58454072 Msa0080210:intron 45.0%
ACTGGTAAACCATCACCAGA+TGG + chr1_2:58454625-58454644 None:intergenic 45.0%
TGACAGTTTGTGCAGAGGAA+TGG + chr1_2:58454694-58454713 None:intergenic 45.0%
TCTTCTGACAGTTTGTGCAG+AGG + chr1_2:58454699-58454718 None:intergenic 45.0%
TCAGAAGAAGAAAGACGCCA+TGG - chr1_2:58454711-58454730 Msa0080210:intron 45.0%
AAGAAGAAAGACGCCATGGA+AGG - chr1_2:58454715-58454734 Msa0080210:intron 45.0%
AAGACGCCATGGAAGGAAAA+AGG - chr1_2:58454722-58454741 Msa0080210:intron 45.0%
! TCAGGACCTTTTTCCTTCCA+TGG + chr1_2:58454731-58454750 None:intergenic 45.0%
!! TGCTTGGTTCTACATTTGGG+TGG - chr1_2:58454840-58454859 Msa0080210:intron 45.0%
AGCTAGGTTAGGTCCATTGA+AGG - chr1_2:58454910-58454929 Msa0080210:five_prime_UTR 45.0%
TGTGCTCCCAACACCCATTA+GGG - chr1_2:58451742-58451761 Msa0080210:three_prime_UTR 50.0%
GAAGCAACCACTTGTTCCGT+TGG - chr1_2:58452343-58452362 Msa0080210:intron 50.0%
AAGGTTGCCAACGGAACAAG+TGG + chr1_2:58452353-58452372 None:intergenic 50.0%
GTTCCGTTGGCAACCTTGAT+CGG - chr1_2:58452356-58452375 Msa0080210:intron 50.0%
! GAAGTATGGACAGGCTGGTT+TGG - chr1_2:58452418-58452437 Msa0080210:intron 50.0%
GTTCTGCTTCGAGAGACCAA+AGG - chr1_2:58452680-58452699 Msa0080210:CDS 50.0%
! CAGATCCTTGACGGGCATAA+TGG - chr1_2:58452845-58452864 Msa0080210:CDS 50.0%
CATACCGCAAGGTGTAAGCA+GGG - chr1_2:58452922-58452941 Msa0080210:intron 50.0%
AAGGTGTAAGCAGGGAGGAA+TGG - chr1_2:58452930-58452949 Msa0080210:intron 50.0%
! AATGGCTTCAAGCACTGCCT+CGG - chr1_2:58452948-58452967 Msa0080210:intron 50.0%
GAGAGAAACAACACCTCCCT+GGG + chr1_2:58453199-58453218 None:intergenic 50.0%
AGAGAGAAACAACACCTCCC+TGG + chr1_2:58453200-58453219 None:intergenic 50.0%
TCTTCCTACTTCACCACCAC+TGG + chr1_2:58453277-58453296 None:intergenic 50.0%
GGAAGACTCAACGTATTCGG+AGG - chr1_2:58453291-58453310 Msa0080210:CDS 50.0%
CAACGTATTCGGAGGCAATG+AGG - chr1_2:58453299-58453318 Msa0080210:CDS 50.0%
! CTAGAAAGGCACAATCCACC+AGG + chr1_2:58453425-58453444 None:intergenic 50.0%
! ATCGATTGGTGACACCGATG+TGG - chr1_2:58453445-58453464 Msa0080210:CDS 50.0%
! TCGATTGGTGACACCGATGT+GGG - chr1_2:58453446-58453465 Msa0080210:CDS 50.0%
TCCGCCAGCATTTGAAAGCT+AGG + chr1_2:58453611-58453630 None:intergenic 50.0%
AGGTACACCACGACATGACT+TGG + chr1_2:58453689-58453708 None:intergenic 50.0%
CATCACCTTAACCACCAGCT+TGG + chr1_2:58453725-58453744 None:intergenic 50.0%
CAAGCTGGTGGTTAAGGTGA+TGG - chr1_2:58453723-58453742 Msa0080210:CDS 50.0%
GACCTTAGAGCTTCCTGTTC+AGG + chr1_2:58453830-58453849 None:intergenic 50.0%
!! CAGGAAGCTCTAAGGTCAAG+AGG - chr1_2:58453833-58453852 Msa0080210:CDS 50.0%
! TCTAAGGTCAAGAGGGCTGA+AGG - chr1_2:58453841-58453860 Msa0080210:CDS 50.0%
GGCAACACAGGATAGTCTGA+AGG + chr1_2:58453899-58453918 None:intergenic 50.0%
TGCCTAGCAGATCAACCATC+TGG - chr1_2:58454607-58454626 Msa0080210:intron 50.0%
CACCAGATGGTTGATCTGCT+AGG + chr1_2:58454612-58454631 None:intergenic 50.0%
GCAGATCAACCATCTGGTGA+TGG - chr1_2:58454613-58454632 Msa0080210:intron 50.0%
TCACTCCGGTATCTAAGCCA+TGG - chr1_2:58454662-58454681 Msa0080210:intron 50.0%
CACTCCGGTATCTAAGCCAT+GGG - chr1_2:58454663-58454682 Msa0080210:intron 50.0%
CCTTCCCATGGCTTAGATAC+CGG + chr1_2:58454670-58454689 None:intergenic 50.0%
ACTGTTGTTGCTCGGACTTC+AGG + chr1_2:58454749-58454768 None:intergenic 50.0%
! AAGCATTGCTCACACTGCCA+AGG + chr1_2:58454825-58454844 None:intergenic 50.0%
TTGGCAGTGTGAGCAATGCT+TGG - chr1_2:58454824-58454843 Msa0080210:intron 50.0%
!! TTTGGCTTGTGCTCAGCTGT+TGG - chr1_2:58454949-58454968 Msa0080210:five_prime_UTR 50.0%
CTGTGCTCCCAACACCCATT+AGG - chr1_2:58451741-58451760 Msa0080210:three_prime_UTR 55.0%
ATCGGCCGTGAGCTACGAAA+TGG - chr1_2:58452374-58452393 Msa0080210:intron 55.0%
GTCATGAGTGCCATACCGCA+AGG - chr1_2:58452911-58452930 Msa0080210:intron 55.0%
CCTGCTTACACCTTGCGGTA+TGG + chr1_2:58452924-58452943 None:intergenic 55.0%
CCATACCGCAAGGTGTAAGC+AGG - chr1_2:58452921-58452940 Msa0080210:intron 55.0%
TCCTCCCTGCTTACACCTTG+CGG + chr1_2:58452929-58452948 None:intergenic 55.0%
! ATGGCTTCAAGCACTGCCTC+GGG - chr1_2:58452949-58452968 Msa0080210:intron 55.0%
AAAGCGACAACTAGAGCCCG+AGG + chr1_2:58452968-58452987 None:intergenic 55.0%
TCACCTGCAGGGGAAACTTC+TGG - chr1_2:58453093-58453112 Msa0080210:intron 55.0%
GTTCCAGAAGTTTCCCCTGC+AGG + chr1_2:58453099-58453118 None:intergenic 55.0%
! ACAGCCAGTGGTGGTGAAGT+AGG - chr1_2:58453270-58453289 Msa0080210:CDS 55.0%
AGCTTGGCAGCAAGTTCTGC+AGG + chr1_2:58453709-58453728 None:intergenic 55.0%
!! TGCAGAACTTGCTGCCAAGC+TGG - chr1_2:58453708-58453727 Msa0080210:CDS 55.0%
!! AGAACTTGCTGCCAAGCTGG+TGG - chr1_2:58453711-58453730 Msa0080210:CDS 55.0%
TGCTGCCAAGCTGGTGGTTA+AGG - chr1_2:58453717-58453736 Msa0080210:CDS 55.0%
CTGCTAGGCAAACTGCACAG+CGG + chr1_2:58454597-58454616 None:intergenic 55.0%
CCGGTATCTAAGCCATGGGA+AGG - chr1_2:58454667-58454686 Msa0080210:intron 55.0%
CAGAGGAATGGACCTTCCCA+TGG + chr1_2:58454682-58454701 None:intergenic 55.0%
CGGCCGATCAAGGTTGCCAA+CGG + chr1_2:58452362-58452381 None:intergenic 60.0%
TCGTAGCTCACGGCCGATCA+AGG + chr1_2:58452372-58452391 None:intergenic 60.0%
ACCGCAAGGTGTAAGCAGGG+AGG - chr1_2:58452925-58452944 Msa0080210:intron 60.0%
AGGTAGGGCCTCTTCGCTGT+TGG - chr1_2:58453399-58453418 Msa0080210:intron 60.0%
ACGGCTGCCAAGTCATGTCG+TGG - chr1_2:58453679-58453698 Msa0080210:intron 60.0%
!! GTTGCTGGCATCGGCAACAC+AGG + chr1_2:58453911-58453930 None:intergenic 60.0%
!! AGGGAGCGGGTTACAGCCAG+TGG - chr1_2:58453258-58453277 Msa0080210:CDS 65.0%
!! GAGCGGGTTACAGCCAGTGG+TGG - chr1_2:58453261-58453280 Msa0080210:CDS 65.0%
CCACCAGGCCAACAGCGAAG+AGG + chr1_2:58453410-58453429 None:intergenic 65.0%
! CCTCTTCGCTGTTGGCCTGG+TGG - chr1_2:58453407-58453426 Msa0080210:CDS 65.0%
GGGCCTCTTCGCTGTTGGCC+TGG - chr1_2:58453404-58453423 Msa0080210:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 58451613 58455111 58451613 ID=Msa0080210;Name=Msa0080210
chr1_2 mRNA 58451613 58455111 58451613 ID=Msa0080210-mRNA-1;Parent=Msa0080210;Name=Msa0080210-mRNA-1;_AED=0.07;_eAED=0.07;_QI=248|1|1|1|0.85|0.75|8|361|423
chr1_2 exon 58451613 58452172 58451613 ID=Msa0080210-mRNA-1:exon:18731;Parent=Msa0080210-mRNA-1
chr1_2 exon 58452650 58452888 58452650 ID=Msa0080210-mRNA-1:exon:18730;Parent=Msa0080210-mRNA-1
chr1_2 exon 58452986 58453111 58452986 ID=Msa0080210-mRNA-1:exon:18729;Parent=Msa0080210-mRNA-1
chr1_2 exon 58453216 58453323 58453216 ID=Msa0080210-mRNA-1:exon:18728;Parent=Msa0080210-mRNA-1
chr1_2 exon 58453404 58453621 58453404 ID=Msa0080210-mRNA-1:exon:18727;Parent=Msa0080210-mRNA-1
chr1_2 exon 58453705 58453876 58453705 ID=Msa0080210-mRNA-1:exon:18726;Parent=Msa0080210-mRNA-1
chr1_2 exon 58454198 58454440 58454198 ID=Msa0080210-mRNA-1:exon:18725;Parent=Msa0080210-mRNA-1
chr1_2 exon 58454897 58455111 58454897 ID=Msa0080210-mRNA-1:exon:18724;Parent=Msa0080210-mRNA-1
chr1_2 five_prime_UTR 58454897 58455111 58454897 ID=Msa0080210-mRNA-1:five_prime_utr;Parent=Msa0080210-mRNA-1
chr1_2 five_prime_UTR 58454408 58454440 58454408 ID=Msa0080210-mRNA-1:five_prime_utr;Parent=Msa0080210-mRNA-1
chr1_2 CDS 58454198 58454407 58454198 ID=Msa0080210-mRNA-1:cds;Parent=Msa0080210-mRNA-1
chr1_2 CDS 58453705 58453876 58453705 ID=Msa0080210-mRNA-1:cds;Parent=Msa0080210-mRNA-1
chr1_2 CDS 58453404 58453621 58453404 ID=Msa0080210-mRNA-1:cds;Parent=Msa0080210-mRNA-1
chr1_2 CDS 58453216 58453323 58453216 ID=Msa0080210-mRNA-1:cds;Parent=Msa0080210-mRNA-1
chr1_2 CDS 58452986 58453111 58452986 ID=Msa0080210-mRNA-1:cds;Parent=Msa0080210-mRNA-1
chr1_2 CDS 58452650 58452888 58452650 ID=Msa0080210-mRNA-1:cds;Parent=Msa0080210-mRNA-1
chr1_2 CDS 58451974 58452172 58451974 ID=Msa0080210-mRNA-1:cds;Parent=Msa0080210-mRNA-1
chr1_2 three_prime_UTR 58451613 58451973 58451613 ID=Msa0080210-mRNA-1:three_prime_utr;Parent=Msa0080210-mRNA-1
Gene Sequence

>Msa0080210

ATGAGTAAGACTGAATTATCAAGGATGAAGCAACCACTTGTTCCGTTGGCAACCTTGATCGGCCGTGAGCTACGAAATGGAAAAACGGAGAAGCCTTTTGTGAAGTATGGACAGGCTGGTTTGGCAAAAAAAGGAGAAGATTACTTTCTAATCAAGACAGATTGCCATAGAGTTCCTGGCGATTCTTCAACGTCATTTTCTGTTTTCGCGATCCTTGACGGGCATAATGGTATATCCGCTGCTATTTTTGCGAAGGAAAACATAATAAACAATGTCATGAGTGCCATACCGCAAGGTGTAAGCAGGGAGGAATGGCTTCAAGCACTGCCTCGGGCTCTAGTTGTCGCTTTTGTGAAAACTGACATGGAATTTCAGAAAAAAGGGGAAACTTCTGGAACGACAGCTACGTTTGTGATTATTGATGGATGGACCGTTACAGTTGCATCTGTTGGGGATTCCCGATGCATATTAGATACCCAGGGAGGTGTTGTTTCTCTCTTGACAGTTGATCACAGACTGGAAGAAAATGTAGAAGAGAGGGAGCGGGTTACAGCCAGTGGTGGTGAAGTAGGAAGACTCAACGTATTCGGAGGCAATGAGGTAGGGCCTCTTCGCTGTTGGCCTGGTGGATTGTGCCTTTCTAGATCGATTGGTGACACCGATGTGGGAGAGTATATCGTTCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGCGGAAGACTAATTATAGCTTCTGATGGAATTTGGGATACTTTGTCTTCTGATACGGCTGCCAAGTCATGTCGTGGTGTACCTGCAGAACTTGCTGCCAAGCTGGTGGTTAAGGAAGCTCTAAGGTCAAGAGGGCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCAGACTATCCTGTGTTGCCGATGCCAGCAACTCCAAGAAAGAAACATAATGTGCTTAGTTCACTTCTCTTTGGAAAGAAATCTCAAAACTCGACAAACAAAGGAACTAATAAGCTTTCTGCAGTTGGTATTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGGCTAGGTAAGGATGTTCCTTCCAATACAAATTCTGGTATTCACCGCTGTGCAGTTTGCCTAGCAGATCAACCATCTGGTGATGGTTTACCAGTGAACACCGATCATTTTATCACTCCGGTATCTAAGCCATGGGAAGGTCCATTCCTCTGCACAAACTGTCAGAAGAAGAAAGACGCCATGGAAGGAAAAAGGTCCTGA
Protein sequence

>Msa0080210

MSKTELSRMKQPLVPLATLIGRELRNGKTEKPFVKYGQAGLAKKGEDYFLIKTDCHRVPGDSSTSFSVFAILDGHNGISAAIFAKENIINNVMSAIPQGVSREEWLQALPRALVVAFVKTDMEFQKKGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDTLSSDTAAKSCRGVPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDYPVLPMPATPRKKHNVLSSLLFGKKSQNSTNKGTNKLSAVGIVEELFEEGSAMLTERLGKDVPSNTNSGIHRCAVCLADQPSGDGLPVNTDHFITPVSKPWEGPFLCTNCQKKKDAMEGKRS*