AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0500640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500640 MtrunA17_Chr3g0133801 96.585 205 7 0 1 205 218 422 1.74e-145 413
Msa0500640 MtrunA17_Chr1g0153671 84.653 202 30 1 1 202 217 417 4.31e-124 358
Msa0500640 MtrunA17_Chr1g0209451 51.675 209 96 3 1 206 220 426 1.57e-70 221
Msa0500640 MtrunA17_Chr7g0271971 49.510 204 102 1 2 205 221 423 1.15e-65 209
Msa0500640 MtrunA17_Chr1g0192471 48.020 202 104 1 2 202 221 422 5.72e-62 199
Msa0500640 MtrunA17_Chr7g0225501 48.113 212 86 11 2 202 241 439 1.84e-41 146
Msa0500640 MtrunA17_Chr2g0326251 48.485 99 46 3 2 96 112 209 5.45e-21 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500640 AT1G47380.1 71.564 211 60 0 1 211 216 426 2.80e-112 328
Msa0500640 AT1G68410.4 51.196 209 99 1 1 206 225 433 3.54e-69 219
Msa0500640 AT1G68410.3 51.196 209 99 1 1 206 225 433 3.54e-69 219
Msa0500640 AT1G68410.1 51.196 209 99 1 1 206 225 433 3.54e-69 219
Msa0500640 AT1G68410.2 51.196 209 99 1 1 206 225 433 3.54e-69 219
Msa0500640 AT1G09160.2 46.117 206 106 3 2 205 221 423 7.06e-54 179
Msa0500640 AT1G09160.1 46.117 206 106 3 2 205 221 423 7.06e-54 179

Find 149 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGATATGGTTGTTGTTTA+TGG 0.088587 3_4:-41182289 Msa0500640:five_prime_UTR
CCATGGCTTCTTTCTTCTTT+TGG 0.118842 3_4:+41178428 None:intergenic
TTGCCAAGGGCTTTGGTTGC+TGG 0.194628 3_4:-41181176 Msa0500640:five_prime_UTR
TAGATCTGTTCATTTGTATA+TGG 0.214122 3_4:-41177922 Msa0500640:three_prime_UTR
AAATCTTCTGATTGTTCATA+TGG 0.282600 3_4:-41178136 Msa0500640:three_prime_UTR
CAGAAGTAGGTGGTTTCTCC+TGG 0.297489 3_4:+41178841 None:intergenic
TAACAGTAGCATTCTGTTAG+AGG 0.298403 3_4:-41178078 Msa0500640:three_prime_UTR
CCATAAACAACAACCATATC+AGG 0.300008 3_4:+41182289 None:intergenic
ACACAAAAGAAACCGGTAAA+AGG 0.325093 3_4:-41178813 Msa0500640:CDS
CTCTCGATCCATTGGTGATA+TGG 0.341033 3_4:-41179686 Msa0500640:exon
AGCAGCGTTGCCAAGGGCTT+TGG 0.343425 3_4:-41181183 Msa0500640:five_prime_UTR
ACCTTCACTTGCTTTACATA+TGG 0.352054 3_4:+41179637 None:intergenic
TATAGTTCCCGTACCATATC+TGG 0.358257 3_4:+41178720 None:intergenic
CAGGTTATTATTCCTGACTA+TGG 0.366731 3_4:+41177754 None:intergenic
ACAGAACCTTTCGCCACTCT+TGG 0.367913 3_4:+41178020 None:intergenic
TTTATACAGCTTTCCAATGC+TGG 0.380887 3_4:-41179147 Msa0500640:intron
TTATCAGCAGTGATGGAGTC+TGG 0.394506 3_4:-41179113 Msa0500640:CDS
ATGGAAGGGAAACGGATATC+AGG 0.403186 3_4:-41178409 Msa0500640:intron
GAAAATCGAGAAACCTGATA+TGG 0.410088 3_4:-41182302 Msa0500640:five_prime_UTR
CATCTGTTTGATCCATAGTC+AGG 0.412431 3_4:-41177766 Msa0500640:three_prime_UTR
AGATCTGTTCATTTGTATAT+GGG 0.412495 3_4:-41177921 Msa0500640:three_prime_UTR
ACGTAAGGAAACCGCGTCCC+TGG 0.425898 3_4:-41178477 Msa0500640:CDS
GTAACCTTCGTGATTATAGA+AGG 0.427750 3_4:-41180503 Msa0500640:five_prime_UTR
AAAGACGCATAGTTTGTTGT+TGG 0.438079 3_4:+41177679 None:intergenic
TGATATCCGTTTCCCTTCCA+TGG 0.439131 3_4:+41178411 None:intergenic
AGAATACGTTGAGCCAGATA+TGG 0.445706 3_4:-41178733 Msa0500640:CDS
ATTTGTATATGGGTCTTGAA+TGG 0.446612 3_4:-41177911 Msa0500640:three_prime_UTR
CATAGTCAGGAATAATAACC+TGG 0.454424 3_4:-41177753 Msa0500640:three_prime_UTR
GTTAGAGGATTTCTGTGACT+TGG 0.454685 3_4:-41178063 Msa0500640:three_prime_UTR
CAGAACCTTTCGCCACTCTT+GGG 0.456137 3_4:+41178021 None:intergenic
GAAAATTTACAGCTATTTGA+CGG 0.459051 3_4:-41181302 Msa0500640:five_prime_UTR
GTGACTCCCATTATTACATC+GGG 0.459533 3_4:-41178186 Msa0500640:CDS
GGATGCTCTAACTGCAGAAA+TGG 0.466163 3_4:-41179091 Msa0500640:CDS
CAGGAATCTTTGCAAGCAAA+GGG 0.469841 3_4:-41178906 Msa0500640:CDS
CACTCATCTCTGTTGAGATC+AGG 0.470329 3_4:+41181209 None:intergenic
ACTTGCTTTACATATGGTAC+AGG 0.473622 3_4:+41179643 None:intergenic
TTGCATACTTGAACCTTCTG+AGG 0.473684 3_4:-41180444 Msa0500640:five_prime_UTR
GAAGTTGGTCGGCTAAATAC+AGG 0.477716 3_4:-41180248 Msa0500640:five_prime_UTR
AGAAGTAGGTGGTTTCTCCT+GGG 0.481102 3_4:+41178842 None:intergenic
AGAAGGTTCAAGTATGCAAC+GGG 0.481264 3_4:+41180448 None:intergenic
GCCACTTGTATGCGCAGTGC+AGG 0.482617 3_4:-41177704 Msa0500640:three_prime_UTR
TCAGGAATCTTTGCAAGCAA+AGG 0.482677 3_4:-41178907 Msa0500640:intron
ACAAACGACTCTTTGACATT+CGG 0.486429 3_4:+41182219 None:intergenic
AACAAGTCTTCCTCCAGCAT+TGG 0.488721 3_4:+41179134 None:intergenic
CGTAAGGAAACCGCGTCCCT+GGG 0.493286 3_4:-41178476 Msa0500640:CDS
CCTTCGTGATTATAGAAGGA+TGG 0.495959 3_4:-41180499 Msa0500640:five_prime_UTR
TAATATATCGACCACGATGC+AGG 0.497457 3_4:+41178866 None:intergenic
TGCACCAACACAAAAGAAAC+CGG 0.497778 3_4:-41178820 Msa0500640:CDS
AGTGGGTAGCAGCGTTGCCA+AGG 0.501821 3_4:-41181190 Msa0500640:five_prime_UTR
TACTTGAACCTTCTGAGGGC+GGG 0.503212 3_4:-41180439 Msa0500640:five_prime_UTR
TGTCAAGTAGAGATTAAACC+TGG 0.504586 3_4:-41178532 Msa0500640:CDS
GGGTGCGCATCACTTCTAGT+GGG 0.504965 3_4:-41180274 Msa0500640:five_prime_UTR
ACGCTTCAACAGCACCGAAA+GGG 0.508685 3_4:+41182339 None:intergenic
AGGTTGGTCCGTTGAGATGT+TGG 0.513837 3_4:-41179726 Msa0500640:five_prime_UTR
TAATGGGAGTCACAGTTGCT+TGG 0.518408 3_4:+41178196 None:intergenic
ATTGTTCAGAAGATTCTCCT+TGG 0.521763 3_4:+41181250 None:intergenic
AGGAAACCGCGTCCCTGGGA+TGG 0.523145 3_4:-41178472 Msa0500640:CDS
TTGTGTCTCTCTCGATCCAT+TGG 0.528406 3_4:-41179694 Msa0500640:five_prime_UTR
ATATGCACAGCACAAACATC+GGG 0.532848 3_4:-41180533 Msa0500640:intron
GCAAAGGAAAGGTCCATCCC+AGG 0.532857 3_4:+41178459 None:intergenic
AAGAAGCCATGGAAGGGAAA+CGG 0.535942 3_4:-41178417 Msa0500640:CDS
GGACGCGGTTTCCTTACGTT+AGG 0.536254 3_4:+41178481 None:intergenic
GGTCCGTTGAGATGTTGGCC+TGG 0.536343 3_4:-41179721 Msa0500640:five_prime_UTR
CTTCGTGATTATAGAAGGAT+GGG 0.537043 3_4:-41180498 Msa0500640:five_prime_UTR
ACCGGTAAAAGGAATGTTGA+AGG 0.538747 3_4:-41178802 Msa0500640:CDS
AGTCTCCTGTTATGAAGCAT+TGG 0.539442 3_4:+41178100 None:intergenic
AGACTTGTTATCAGCAGTGA+TGG 0.542264 3_4:-41179120 Msa0500640:CDS
GATCTGCCTTGCTTTCAGAA+AGG 0.546185 3_4:-41178689 Msa0500640:intron
ATGAGGGTGCGCCTAACGTA+AGG 0.546714 3_4:-41178492 Msa0500640:CDS
ACCAAACCTTTCTGAAAGCA+AGG 0.546871 3_4:+41178683 None:intergenic
TTGTCGTGGCATGTCGGCGG+AGG 0.549386 3_4:-41179058 Msa0500640:CDS
AATGCTAGCGAGAATAAGAA+AGG 0.549595 3_4:-41182265 Msa0500640:five_prime_UTR
TGGCAACTTAAGCAAAGGAA+AGG 0.552600 3_4:+41178448 None:intergenic
ACATGCCACGACAACAATCA+AGG 0.552840 3_4:+41179067 None:intergenic
CGCTTCAACAGCACCGAAAG+GGG 0.554180 3_4:+41182340 None:intergenic
CGAGAGAGACACAAGCCACC+AGG 0.557992 3_4:+41179703 None:intergenic
CTTGCTTTACATATGGTACA+GGG 0.558530 3_4:+41179644 None:intergenic
ATATTCAGAAGATTCAATGT+AGG 0.558567 3_4:+41177852 None:intergenic
TAATGAAGCCCGCCCTCAGA+AGG 0.561382 3_4:+41180431 None:intergenic
AACCTTTCGCCACTCTTGGG+TGG 0.561700 3_4:+41178024 None:intergenic
AAGAAGAAAGAAGCCATGGA+AGG 0.562499 3_4:-41178424 Msa0500640:CDS
AAGCCAGCAACCAAAGCCCT+TGG 0.562857 3_4:+41181173 None:intergenic
TGCATACTTGAACCTTCTGA+GGG 0.565442 3_4:-41180443 Msa0500640:five_prime_UTR
ACGTTGAGCCAGATATGGTA+CGG 0.565764 3_4:-41178728 Msa0500640:CDS
AGGGTGCGCATCACTTCTAG+TGG 0.569055 3_4:-41180275 Msa0500640:five_prime_UTR
TGCTGCTGCAATTTATGCCA+AGG 0.573567 3_4:-41181267 Msa0500640:five_prime_UTR
AGAAGAAAGAAGCCATGGAA+GGG 0.574414 3_4:-41178423 Msa0500640:CDS
CATATGCACAGCACAAACAT+CGG 0.575210 3_4:-41180534 Msa0500640:intron
CGTGGTCGATATATTACCCC+AGG 0.577205 3_4:-41178859 Msa0500640:CDS
CCAAAAGAAGAAAGAAGCCA+TGG 0.583569 3_4:-41178428 Msa0500640:CDS
GTTGTAACAGTTGCATCAGT+TGG 0.584270 3_4:-41180476 Msa0500640:five_prime_UTR
TCTGTTGAGATCAGGAGGAA+TGG 0.584831 3_4:+41181217 None:intergenic
ACCAACATCCATATCACCAA+TGG 0.585265 3_4:+41179678 None:intergenic
CACGCTTCAACAGCACCGAA+AGG 0.586769 3_4:+41182338 None:intergenic
TGTACTGAAATACCCTCCCC+AGG 0.587459 3_4:+41178514 None:intergenic
ATACTTGAACCTTCTGAGGG+CGG 0.588848 3_4:-41180440 Msa0500640:five_prime_UTR
TGATCTCAACAGAGATGAGT+GGG 0.595669 3_4:-41181207 Msa0500640:five_prime_UTR
AAAGGTCCATCCCAGGGACG+CGG 0.595744 3_4:+41178466 None:intergenic
TCCATTGGTGATATGGATGT+TGG 0.599313 3_4:-41179679 Msa0500640:exon
TGTGACTCCCATTATTACAT+CGG 0.599756 3_4:-41178187 Msa0500640:CDS
AGTAGAGATTAAACCTGGGG+AGG 0.600098 3_4:-41178527 Msa0500640:CDS
CAGCTATTTGACGGACACAA+TGG 0.601732 3_4:-41181293 Msa0500640:five_prime_UTR
GTAGAGATTAAACCTGGGGA+GGG 0.602809 3_4:-41178526 Msa0500640:CDS
TGTGTTGGTGCAGAAGTAGG+TGG 0.603408 3_4:+41178831 None:intergenic
GTGGGTAGCAGCGTTGCCAA+GGG 0.603465 3_4:-41181189 Msa0500640:five_prime_UTR
CAGAAGGTTCAAGTATGCAA+CGG 0.604075 3_4:+41180447 None:intergenic
GACTCCCATTATTACATCGG+GGG 0.606915 3_4:-41178184 Msa0500640:CDS
CAAAGGAAAGGTCCATCCCA+GGG 0.607760 3_4:+41178460 None:intergenic
TCATCTCTGTTGAGATCAGG+AGG 0.608530 3_4:+41181212 None:intergenic
TACTATTGCATAATACAACA+AGG 0.609547 3_4:+41177882 None:intergenic
ATGGTCCTTGATTGTTGTCG+TGG 0.610413 3_4:-41179072 Msa0500640:CDS
TGGAATGCTCAACAGGATGT+CGG 0.611135 3_4:-41177990 Msa0500640:three_prime_UTR
GCCTGCACTGCGCATACAAG+TGG 0.614389 3_4:+41177703 None:intergenic
TATCAGCAGTGATGGAGTCT+GGG 0.616566 3_4:-41179112 Msa0500640:CDS
ATAGTCAGGAATAATAACCT+GGG 0.617389 3_4:-41177752 Msa0500640:three_prime_UTR
CTGATCTCAACAGAGATGAG+TGG 0.619687 3_4:-41181208 Msa0500640:five_prime_UTR
CGTTGAGCCAGATATGGTAC+GGG 0.620610 3_4:-41178727 Msa0500640:CDS
ACCATATGTAAAGCAAGTGA+AGG 0.621718 3_4:-41179638 Msa0500640:intron
ATACAGCTTTCCAATGCTGG+AGG 0.622202 3_4:-41179144 Msa0500640:intron
GGAGGGTATTTCAGTACATG+AGG 0.623571 3_4:-41178509 Msa0500640:CDS
GGTCGGCTAAATACAGGCGG+AGG 0.624068 3_4:-41180242 Msa0500640:five_prime_UTR
AAATACAGGCGGAGGTGCAG+AGG 0.629751 3_4:-41180234 Msa0500640:intron
CTTGTCAGCAGATCATCGAC+TGG 0.635215 3_4:-41180408 Msa0500640:five_prime_UTR
GTGCGCATCACTTCTAGTGG+GGG 0.635281 3_4:-41180272 Msa0500640:five_prime_UTR
ACTCTTGTAGAAATAACCCC+AGG 0.637035 3_4:+41177735 None:intergenic
GAAGTAGGTGGTTTCTCCTG+GGG 0.638132 3_4:+41178843 None:intergenic
GGTGCGCATCACTTCTAGTG+GGG 0.638228 3_4:-41180273 Msa0500640:five_prime_UTR
GTCAAGTAGAGATTAAACCT+GGG 0.644282 3_4:-41178531 Msa0500640:CDS
GAATATGAACCACCCAAGAG+TGG 0.645393 3_4:-41178033 Msa0500640:three_prime_UTR
TGATTGTTGTCGTGGCATGT+CGG 0.646140 3_4:-41179064 Msa0500640:CDS
TGCGCATACAAGTGGCAGTG+TGG 0.654439 3_4:+41177711 None:intergenic
GTACGGGAACTATACGAGGA+AGG 0.659927 3_4:-41178711 Msa0500640:CDS
CCGTTGAGATGTTGGCCTGG+TGG 0.663273 3_4:-41179718 Msa0500640:five_prime_UTR
AACCACCCAAGAGTGGCGAA+AGG 0.663603 3_4:-41178026 Msa0500640:three_prime_UTR
CCACCAGGCCAACATCTCAA+CGG 0.675490 3_4:+41179718 None:intergenic
TCAAGTAGAGATTAAACCTG+GGG 0.678261 3_4:-41178530 Msa0500640:CDS
TGTCAAAGAGTCGTTTGTGA+TGG 0.680422 3_4:-41182214 Msa0500640:five_prime_UTR
AACTTGAACATGTTGCAGAG+TGG 0.681139 3_4:+41178571 None:intergenic
GAGGGTATTTCAGTACATGA+GGG 0.690141 3_4:-41178508 Msa0500640:CDS
TGACTCCCATTATTACATCG+GGG 0.695633 3_4:-41178185 Msa0500640:CDS
ACTATTGCATAATACAACAA+GGG 0.697633 3_4:+41177883 None:intergenic
CCATCCTTCTATAATCACGA+AGG 0.697805 3_4:+41180499 None:intergenic
GTTGGTCGGCTAAATACAGG+CGG 0.700243 3_4:-41180245 Msa0500640:five_prime_UTR
AACATACGAAGATGACTCAG+AGG 0.704568 3_4:+41178761 None:intergenic
TAGTCAGGAATAATAACCTG+GGG 0.711673 3_4:-41177751 Msa0500640:three_prime_UTR
AATGCTCAACAGGATGTCGG+AGG 0.712144 3_4:-41177987 Msa0500640:three_prime_UTR
TTGTTGTCGTGGCATGTCGG+CGG 0.717945 3_4:-41179061 Msa0500640:CDS
TATGGTACGGGAACTATACG+AGG 0.726277 3_4:-41178715 Msa0500640:CDS
AGATGACACAACCTGCATCG+TGG 0.745057 3_4:-41178877 Msa0500640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAATTCTAATTTGA+TGG - chr3_4:41177860-41177879 Msa0500640:three_prime_UTR 10.0%
!!! ATATTGTATTTTTCTTTACT+TGG - chr3_4:41178630-41178649 Msa0500640:intron 15.0%
!!! TAGAGTTAGTTTTATTTTTT+TGG - chr3_4:41179280-41179299 Msa0500640:intron 15.0%
!!! TCTATTTTTTTTTCTTCTTA+AGG - chr3_4:41179411-41179430 Msa0500640:intron 15.0%
!! AAAAGAAATAGTATTAATAG+AGG + chr3_4:41179934-41179953 None:intergenic 15.0%
!! ATAGATTCAAAAGTAAAATT+AGG - chr3_4:41179987-41180006 Msa0500640:intron 15.0%
!!! GATTCATTAATACTTTTTTT+AGG - chr3_4:41180193-41180212 Msa0500640:intron 15.0%
!! AATATAAAACTAAACTTAAG+TGG + chr3_4:41180459-41180478 None:intergenic 15.0%
!!! TGTATTTTTAAGTCATTTAT+AGG - chr3_4:41180734-41180753 Msa0500640:intron 15.0%
!! AATTAGAACAATTAACAAAT+AGG + chr3_4:41180807-41180826 None:intergenic 15.0%
!!! TTTCTACATATTCTGTTTTT+GGG - chr3_4:41177807-41177826 Msa0500640:three_prime_UTR 20.0%
!! CATCAAATATTTATGTGATT+TGG - chr3_4:41178054-41178073 Msa0500640:three_prime_UTR 20.0%
!!! TTTTACTTATTATTTTGGTG+TGG - chr3_4:41178109-41178128 Msa0500640:three_prime_UTR 20.0%
!! ATCAAGAAAAGTAAATGATT+GGG - chr3_4:41178139-41178158 Msa0500640:exon 20.0%
!!! ATTCAATTTGCTAAACTATT+TGG + chr3_4:41178442-41178461 None:intergenic 20.0%
!! TTTAGCAAATTGAATATACA+CGG - chr3_4:41178447-41178466 Msa0500640:CDS 20.0%
!! CTTCATAACCAAATATTTAA+TGG + chr3_4:41178914-41178933 None:intergenic 20.0%
!!! ATTTTTTTACTCTGAGAATT+GGG + chr3_4:41179008-41179027 None:intergenic 20.0%
!!! AATTTTTTTACTCTGAGAAT+TGG + chr3_4:41179009-41179028 None:intergenic 20.0%
!! AGGTTAGAAAAATATTATTG+AGG + chr3_4:41179091-41179110 None:intergenic 20.0%
!!! AATATTTTTCTAACCTCTTT+TGG - chr3_4:41179095-41179114 Msa0500640:CDS 20.0%
!! AATAAAACTAACTCTACTAT+AGG + chr3_4:41179276-41179295 None:intergenic 20.0%
!! AAAAATGGATAACAGTTTAA+AGG + chr3_4:41179795-41179814 None:intergenic 20.0%
!!! GGTTTTTGTTGTATTTTATT+GGG + chr3_4:41179863-41179882 None:intergenic 20.0%
!!! TGGTTTTTGTTGTATTTTAT+TGG + chr3_4:41179864-41179883 None:intergenic 20.0%
!!! ACTACGTTAATGATTTTTAT+AGG - chr3_4:41180250-41180269 Msa0500640:five_prime_UTR 20.0%
!!! TAGTATTTTTGGAAAACAAA+AGG + chr3_4:41180624-41180643 None:intergenic 20.0%
!! ACTAATTGATGAAACAAAAA+TGG - chr3_4:41180662-41180681 Msa0500640:intron 20.0%
!!! CAAAAATGGAAGTATTTTAA+TGG - chr3_4:41180676-41180695 Msa0500640:intron 20.0%
!!! TTATATTCCTTTTTTGTTTC+TGG - chr3_4:41182048-41182067 Msa0500640:intron 20.0%
!! GTTTCTACATATTCTGTTTT+TGG - chr3_4:41177806-41177825 Msa0500640:three_prime_UTR 25.0%
!!! TTCTACATATTCTGTTTTTG+GGG - chr3_4:41177808-41177827 Msa0500640:three_prime_UTR 25.0%
!! CAAATATTTATGTGATTTGG+AGG - chr3_4:41178057-41178076 Msa0500640:three_prime_UTR 25.0%
! GATCAAGAAAAGTAAATGAT+TGG - chr3_4:41178138-41178157 Msa0500640:three_prime_UTR 25.0%
! TTGAAGTTTCAACAATATCA+CGG + chr3_4:41178231-41178250 None:intergenic 25.0%
!!! TAAACTATTTGGTGTATCTT+TGG + chr3_4:41178431-41178450 None:intergenic 25.0%
! TATGCATTCGTTGTATAAAA+AGG + chr3_4:41178595-41178614 None:intergenic 25.0%
! GAAAATTTACAGCTATTTGA+CGG - chr3_4:41178694-41178713 Msa0500640:CDS 25.0%
!! AATCTTCTGAACAATGTTTT+AGG - chr3_4:41178754-41178773 Msa0500640:CDS 25.0%
!! GATAAAGATTTTCAACAGAA+AGG - chr3_4:41178856-41178875 Msa0500640:CDS 25.0%
! CATAACCAAATATTTAATGG+AGG + chr3_4:41178911-41178930 None:intergenic 25.0%
! AACAGATAAAAAAAAGACCA+GGG + chr3_4:41179135-41179154 None:intergenic 25.0%
! AAACAGATAAAAAAAAGACC+AGG + chr3_4:41179136-41179155 None:intergenic 25.0%
! TATTGTGTAGATATTGTTAC+TGG - chr3_4:41179305-41179324 Msa0500640:intron 25.0%
! ATTGTGTAGATATTGTTACT+GGG - chr3_4:41179306-41179325 Msa0500640:intron 25.0%
! AATAGAAAAATCATGAACTG+AGG + chr3_4:41179397-41179416 None:intergenic 25.0%
!! AAGAAGAGTAAGTTTTTACT+GGG - chr3_4:41179620-41179639 Msa0500640:intron 25.0%
!!! TTATCCATTTTTATCTCTGA+TGG - chr3_4:41179803-41179822 Msa0500640:intron 25.0%
! AATACCATCAGAGATAAAAA+TGG + chr3_4:41179810-41179829 None:intergenic 25.0%
!!! CAATGATTTGTTGTTTTTAG+TGG + chr3_4:41179890-41179909 None:intergenic 25.0%
! CACTAAAAACAACAAATCAT+TGG - chr3_4:41179888-41179907 Msa0500640:intron 25.0%
! AAATTAGGTCAATCATATCA+TGG - chr3_4:41180002-41180021 Msa0500640:intron 25.0%
! AATTAGGTCAATCATATCAT+GGG - chr3_4:41180003-41180022 Msa0500640:intron 25.0%
!! CGTTAATGATTTTTATAGGT+TGG - chr3_4:41180254-41180273 Msa0500640:five_prime_UTR 25.0%
! AAACTAAACTTAAGTGGATA+CGG + chr3_4:41180453-41180472 None:intergenic 25.0%
!! ATTTTCATAAGATTAACTGC+TGG - chr3_4:41180553-41180572 Msa0500640:intron 25.0%
!! GGCAAAATCATTAGTATTTT+TGG + chr3_4:41180635-41180654 None:intergenic 25.0%
! TTTCATCAATTAGTGTTCAA+GGG + chr3_4:41180656-41180675 None:intergenic 25.0%
! AATGGAAAACAAAGTAGTTA+TGG - chr3_4:41180694-41180713 Msa0500640:intron 25.0%
! AAGTTAACAAATGAGTAACA+AGG + chr3_4:41181036-41181055 None:intergenic 25.0%
! ATCTGAAAGCAATATATTGA+AGG + chr3_4:41181688-41181707 None:intergenic 25.0%
! AAATCTTCTGATTGTTCATA+TGG - chr3_4:41181860-41181879 Msa0500640:intron 25.0%
! TAGATCTGTTCATTTGTATA+TGG - chr3_4:41182074-41182093 Msa0500640:intron 25.0%
! AGATCTGTTCATTTGTATAT+GGG - chr3_4:41182075-41182094 Msa0500640:intron 25.0%
! ACTATTGCATAATACAACAA+GGG + chr3_4:41182116-41182135 None:intergenic 25.0%
! TACTATTGCATAATACAACA+AGG + chr3_4:41182117-41182136 None:intergenic 25.0%
! ATATTCAGAAGATTCAATGT+AGG + chr3_4:41182147-41182166 None:intergenic 25.0%
! CTTAACTATGTTGTGCATTT+TGG - chr3_4:41178172-41178191 Msa0500640:CDS 30.0%
! TTTTGGATTGACTGTGAATT+TGG - chr3_4:41178189-41178208 Msa0500640:CDS 30.0%
!!! AGTTTTGTTGCTAAAGTCAA+AGG - chr3_4:41178256-41178275 Msa0500640:intron 30.0%
!! GTTTTGTTGCTAAAGTCAAA+GGG - chr3_4:41178257-41178276 Msa0500640:intron 30.0%
! TTTTGTTGCTAAAGTCAAAG+GGG - chr3_4:41178258-41178277 Msa0500640:intron 30.0%
GCAAAGTCAACCAAAAAAAA+AGG + chr3_4:41178347-41178366 None:intergenic 30.0%
AAACAAAACCATTGCTTTGA+GGG + chr3_4:41178529-41178548 None:intergenic 30.0%
AAAACAAAACCATTGCTTTG+AGG + chr3_4:41178530-41178549 None:intergenic 30.0%
! AGATTTTCAACAGAAAGGTA+TGG - chr3_4:41178861-41178880 Msa0500640:CDS 30.0%
TCTTGCCTCCATTAAATATT+TGG - chr3_4:41178903-41178922 Msa0500640:CDS 30.0%
ATTCATATGAAGATTCCAGA+TGG + chr3_4:41178951-41178970 None:intergenic 30.0%
AGAACAATGAGACAAAAAAC+AGG - chr3_4:41179031-41179050 Msa0500640:intron 30.0%
! GCAGTTATTAAATTTTCTGC+AGG - chr3_4:41179182-41179201 Msa0500640:intron 30.0%
ACTAACTCTACTATAGGTAT+GGG + chr3_4:41179270-41179289 None:intergenic 30.0%
AACTAACTCTACTATAGGTA+TGG + chr3_4:41179271-41179290 None:intergenic 30.0%
TTGTGTAGATATTGTTACTG+GGG - chr3_4:41179307-41179326 Msa0500640:intron 30.0%
! GAAGAAGAGTAAGTTTTTAC+TGG - chr3_4:41179619-41179638 Msa0500640:intron 30.0%
! TCGTTTCATTTTCTTTCATC+AGG - chr3_4:41179698-41179717 Msa0500640:five_prime_UTR 30.0%
! TTTCATTTTCTTTCATCAGG+AGG - chr3_4:41179701-41179720 Msa0500640:five_prime_UTR 30.0%
! TTCATTTTCTTTCATCAGGA+GGG - chr3_4:41179702-41179721 Msa0500640:five_prime_UTR 30.0%
!! ATGGTATTGACTACCTAAAA+AGG - chr3_4:41179822-41179841 Msa0500640:intron 30.0%
! ATGAGTCTTTAAGCCTTTTT+AGG + chr3_4:41179838-41179857 None:intergenic 30.0%
!!! TTTGTTGTTTTTAGTGGTAG+TGG + chr3_4:41179884-41179903 None:intergenic 30.0%
ATTAGGTCAATCATATCATG+GGG - chr3_4:41180004-41180023 Msa0500640:intron 30.0%
!! CTTAAAAGTACTCATGACAT+AGG - chr3_4:41180076-41180095 Msa0500640:intron 30.0%
AACTAAACTTAAGTGGATAC+GGG + chr3_4:41180452-41180471 None:intergenic 30.0%
GTTTCATCAATTAGTGTTCA+AGG + chr3_4:41180657-41180676 None:intergenic 30.0%
GTGAATTTCATAAGGGATAA+TGG + chr3_4:41180780-41180799 None:intergenic 30.0%
! AGGTCTTGTGAATTTCATAA+GGG + chr3_4:41180787-41180806 None:intergenic 30.0%
! TAGGTCTTGTGAATTTCATA+AGG + chr3_4:41180788-41180807 None:intergenic 30.0%
! GAGCATACTTTTACAATATG+TGG + chr3_4:41180972-41180991 None:intergenic 30.0%
GAAAGCAATATATTGAAGGA+GGG + chr3_4:41181684-41181703 None:intergenic 30.0%
TGAAAGCAATATATTGAAGG+AGG + chr3_4:41181685-41181704 None:intergenic 30.0%
TCTACATCCAGAAACAAAAA+AGG + chr3_4:41182058-41182077 None:intergenic 30.0%
ATTTGTATATGGGTCTTGAA+TGG - chr3_4:41182085-41182104 Msa0500640:intron 30.0%
ATAGTCAGGAATAATAACCT+GGG - chr3_4:41182244-41182263 Msa0500640:five_prime_UTR 30.0%
GAAAATCGAGAAACCTGATA+TGG - chr3_4:41177694-41177713 Msa0500640:three_prime_UTR 35.0%
CCATAAACAACAACCATATC+AGG + chr3_4:41177710-41177729 None:intergenic 35.0%
!! CCTGATATGGTTGTTGTTTA+TGG - chr3_4:41177707-41177726 Msa0500640:three_prime_UTR 35.0%
AATGCTAGCGAGAATAAGAA+AGG - chr3_4:41177731-41177750 Msa0500640:three_prime_UTR 35.0%
ACAAACGACTCTTTGACATT+CGG + chr3_4:41177780-41177799 None:intergenic 35.0%
! TGACTGTGAATTTGGTGAAA+TGG - chr3_4:41178197-41178216 Msa0500640:CDS 35.0%
!! TGTATCTTTGGAATCACAGT+GGG + chr3_4:41178419-41178438 None:intergenic 35.0%
AGCAAATTGAATATACACGG+AGG - chr3_4:41178450-41178469 Msa0500640:CDS 35.0%
CAGAAAATGCAAATGCAACA+TGG + chr3_4:41178669-41178688 None:intergenic 35.0%
ATTGTTCAGAAGATTCTCCT+TGG + chr3_4:41178749-41178768 None:intergenic 35.0%
GCAATTTCATAATCTCCATC+TGG - chr3_4:41178933-41178952 Msa0500640:intron 35.0%
! TGAGACAAAAAACAGGTTGA+TGG - chr3_4:41179038-41179057 Msa0500640:CDS 35.0%
TGTCTAATGTACATAGAGCA+TGG - chr3_4:41179218-41179237 Msa0500640:intron 35.0%
GTAACCTTCGTGATTATAGA+AGG - chr3_4:41179493-41179512 Msa0500640:intron 35.0%
CTTCGTGATTATAGAAGGAT+GGG - chr3_4:41179498-41179517 Msa0500640:intron 35.0%
GAGACTTTACTGCAATGTAA+TGG + chr3_4:41179677-41179696 None:intergenic 35.0%
!! AAATCATTGGCTTGTCGAAT+GGG - chr3_4:41179901-41179920 Msa0500640:intron 35.0%
CTTGCTTTACATATGGTACA+GGG + chr3_4:41180355-41180374 None:intergenic 35.0%
ACTTGCTTTACATATGGTAC+AGG + chr3_4:41180356-41180375 None:intergenic 35.0%
ACCATATGTAAAGCAAGTGA+AGG - chr3_4:41180358-41180377 Msa0500640:intron 35.0%
ACCTTCACTTGCTTTACATA+TGG + chr3_4:41180362-41180381 None:intergenic 35.0%
TATGTAAAGCAAGTGAAGGT+TGG - chr3_4:41180362-41180381 Msa0500640:intron 35.0%
!! TCTAATTCATTTTTCCCCTC+TGG - chr3_4:41180820-41180839 Msa0500640:intron 35.0%
TGTATAAATAGAAGCCAGAG+GGG + chr3_4:41180837-41180856 None:intergenic 35.0%
CTGTATAAATAGAAGCCAGA+GGG + chr3_4:41180838-41180857 None:intergenic 35.0%
TTTATACAGCTTTCCAATGC+TGG - chr3_4:41180849-41180868 Msa0500640:intron 35.0%
AAGATTCCTGAAGAAAGCAA+AGG + chr3_4:41181080-41181099 None:intergenic 35.0%
!!! TTTACCGGTTTCTTTTGTGT+TGG + chr3_4:41181183-41181202 None:intergenic 35.0%
ACACAAAAGAAACCGGTAAA+AGG - chr3_4:41181183-41181202 Msa0500640:five_prime_UTR 35.0%
TGTCAAGTAGAGATTAAACC+TGG - chr3_4:41181464-41181483 Msa0500640:intron 35.0%
GTCAAGTAGAGATTAAACCT+GGG - chr3_4:41181465-41181484 Msa0500640:intron 35.0%
TCAAGTAGAGATTAAACCTG+GGG - chr3_4:41181466-41181485 Msa0500640:intron 35.0%
! TCTTTTGGCAACTTAAGCAA+AGG + chr3_4:41181556-41181575 None:intergenic 35.0%
AACTCGAGAATCAACATCAA+TGG + chr3_4:41181640-41181659 None:intergenic 35.0%
TGAAGGAGGGAAATAGATTA+TGG + chr3_4:41181671-41181690 None:intergenic 35.0%
TGTGACTCCCATTATTACAT+CGG - chr3_4:41181809-41181828 Msa0500640:intron 35.0%
! GTTTTCCAATGCTTCATAAC+AGG - chr3_4:41181891-41181910 Msa0500640:intron 35.0%
TAACAGTAGCATTCTGTTAG+AGG - chr3_4:41181918-41181937 Msa0500640:intron 35.0%
CGAAAGGTTCTGTAAAAAGA+TGG - chr3_4:41181986-41182005 Msa0500640:intron 35.0%
AAAAAGATGGAATGCTCAAC+AGG - chr3_4:41181999-41182018 Msa0500640:intron 35.0%
CAGGTTATTATTCCTGACTA+TGG + chr3_4:41182245-41182264 None:intergenic 35.0%
CATAGTCAGGAATAATAACC+TGG - chr3_4:41182243-41182262 Msa0500640:five_prime_UTR 35.0%
TAGTCAGGAATAATAACCTG+GGG - chr3_4:41182245-41182264 Msa0500640:five_prime_UTR 35.0%
!! AAAGACGCATAGTTTGTTGT+TGG + chr3_4:41182320-41182339 None:intergenic 35.0%
TGTCAAAGAGTCGTTTGTGA+TGG - chr3_4:41177782-41177801 Msa0500640:three_prime_UTR 40.0%
!!! CTTTTGATGGAAAGCACTCT+TGG - chr3_4:41177910-41177929 Msa0500640:three_prime_UTR 40.0%
TCAAGTGTCTGTTACCAACA+CGG - chr3_4:41177935-41177954 Msa0500640:three_prime_UTR 40.0%
! TTTACTAGTGTCGAGTTGTC+AGG - chr3_4:41177987-41178006 Msa0500640:three_prime_UTR 40.0%
! TTACTAGTGTCGAGTTGTCA+GGG - chr3_4:41177988-41178007 Msa0500640:three_prime_UTR 40.0%
! CTGTGAATTTGGTGAAATGG+CGG - chr3_4:41178200-41178219 Msa0500640:CDS 40.0%
!! AGCTCAATAATGGGCTTGTT+TGG + chr3_4:41178316-41178335 None:intergenic 40.0%
ACAAGCCCATTATTGAGCTA+CGG - chr3_4:41178317-41178336 Msa0500640:intron 40.0%
CTTTGCAAAAGCGAACACTT+TGG - chr3_4:41178361-41178380 Msa0500640:intron 40.0%
! CAGTGGGTTTGATAAAGTCA+GGG + chr3_4:41178403-41178422 None:intergenic 40.0%
! ACAGTGGGTTTGATAAAGTC+AGG + chr3_4:41178404-41178423 None:intergenic 40.0%
!! GTGTATCTTTGGAATCACAG+TGG + chr3_4:41178420-41178439 None:intergenic 40.0%
!! AAAACCATTGCTTTGAGGGT+GGG + chr3_4:41178525-41178544 None:intergenic 40.0%
! GTGTATCTGAAAGCATAGTG+TGG - chr3_4:41178569-41178588 Msa0500640:CDS 40.0%
TGATCTCAACAGAGATGAGT+GGG - chr3_4:41178789-41178808 Msa0500640:CDS 40.0%
! TTGATGGATACAGAACACGA+TGG - chr3_4:41179054-41179073 Msa0500640:CDS 40.0%
GGTACAAGAATCATCAGTCA+TGG + chr3_4:41179376-41179395 None:intergenic 40.0%
CATATGCACAGCACAAACAT+CGG - chr3_4:41179462-41179481 Msa0500640:intron 40.0%
ATATGCACAGCACAAACATC+GGG - chr3_4:41179463-41179482 Msa0500640:intron 40.0%
CCATCCTTCTATAATCACGA+AGG + chr3_4:41179500-41179519 None:intergenic 40.0%
CCTTCGTGATTATAGAAGGA+TGG - chr3_4:41179497-41179516 Msa0500640:intron 40.0%
GTTGTAACAGTTGCATCAGT+TGG - chr3_4:41179520-41179539 Msa0500640:intron 40.0%
AGAAGGTTCAAGTATGCAAC+GGG + chr3_4:41179551-41179570 None:intergenic 40.0%
CAGAAGGTTCAAGTATGCAA+CGG + chr3_4:41179552-41179571 None:intergenic 40.0%
TTGCATACTTGAACCTTCTG+AGG - chr3_4:41179552-41179571 Msa0500640:intron 40.0%
TGCATACTTGAACCTTCTGA+GGG - chr3_4:41179553-41179572 Msa0500640:intron 40.0%
!! CAAATCATTGGCTTGTCGAA+TGG - chr3_4:41179900-41179919 Msa0500640:intron 40.0%
! TCCATTGGTGATATGGATGT+TGG - chr3_4:41180317-41180336 Msa0500640:intron 40.0%
ACCAACATCCATATCACCAA+TGG + chr3_4:41180321-41180340 None:intergenic 40.0%
CAATATTGCTGCATGTGCAA+AGG + chr3_4:41180398-41180417 None:intergenic 40.0%
CTGCAGCAATAAAGCAACAA+AGG + chr3_4:41180599-41180618 None:intergenic 40.0%
!! CTTTGTTGCTTTATTGCTGC+AGG - chr3_4:41180597-41180616 Msa0500640:intron 40.0%
GCTGTATAAATAGAAGCCAG+AGG + chr3_4:41180839-41180858 None:intergenic 40.0%
!! AGACTTGTTATCAGCAGTGA+TGG - chr3_4:41180876-41180895 Msa0500640:intron 40.0%
TCATGTCCTTTGCTTTCTTC+AGG - chr3_4:41181071-41181090 Msa0500640:intron 40.0%
TCAGGAATCTTTGCAAGCAA+AGG - chr3_4:41181089-41181108 Msa0500640:intron 40.0%
CAGGAATCTTTGCAAGCAAA+GGG - chr3_4:41181090-41181109 Msa0500640:intron 40.0%
TAATATATCGACCACGATGC+AGG + chr3_4:41181133-41181152 None:intergenic 40.0%
!! TTTTGTGTTGGTGCAGAAGT+AGG + chr3_4:41181171-41181190 None:intergenic 40.0%
TGCACCAACACAAAAGAAAC+CGG - chr3_4:41181176-41181195 Msa0500640:five_prime_UTR 40.0%
ACCGGTAAAAGGAATGTTGA+AGG - chr3_4:41181194-41181213 Msa0500640:five_prime_UTR 40.0%
! GCCTTCAACATTCCTTTTAC+CGG + chr3_4:41181198-41181217 None:intergenic 40.0%
! AGAGGACTTTTTGCGGAAAA+TGG + chr3_4:41181220-41181239 None:intergenic 40.0%
! ATGACTCAGAGGACTTTTTG+CGG + chr3_4:41181227-41181246 None:intergenic 40.0%
AACATACGAAGATGACTCAG+AGG + chr3_4:41181238-41181257 None:intergenic 40.0%
AGAATACGTTGAGCCAGATA+TGG - chr3_4:41181263-41181282 Msa0500640:five_prime_UTR 40.0%
TATAGTTCCCGTACCATATC+TGG + chr3_4:41181279-41181298 None:intergenic 40.0%
! ACCAAACCTTTCTGAAAGCA+AGG + chr3_4:41181316-41181335 None:intergenic 40.0%
! TTTGCAGCTTGTTCTCTAGT+TGG - chr3_4:41181349-41181368 Msa0500640:intron 40.0%
AACATCTTTGTCTGAACTGC+AGG - chr3_4:41181387-41181406 Msa0500640:intron 40.0%
AACTTGAACATGTTGCAGAG+TGG + chr3_4:41181428-41181447 None:intergenic 40.0%
!! GAGGGTATTTCAGTACATGA+GGG - chr3_4:41181488-41181507 Msa0500640:intron 40.0%
TGGCAACTTAAGCAAAGGAA+AGG + chr3_4:41181551-41181570 None:intergenic 40.0%
! CCATGGCTTCTTTCTTCTTT+TGG + chr3_4:41181571-41181590 None:intergenic 40.0%
CCAAAAGAAGAAAGAAGCCA+TGG - chr3_4:41181568-41181587 Msa0500640:intron 40.0%
AAGAAGAAAGAAGCCATGGA+AGG - chr3_4:41181572-41181591 Msa0500640:intron 40.0%
AGAAGAAAGAAGCCATGGAA+GGG - chr3_4:41181573-41181592 Msa0500640:intron 40.0%
CTTTCAGATAGACGTAGCAA+TGG - chr3_4:41181699-41181718 Msa0500640:intron 40.0%
GTGACTCCCATTATTACATC+GGG - chr3_4:41181810-41181829 Msa0500640:intron 40.0%
TGACTCCCATTATTACATCG+GGG - chr3_4:41181811-41181830 Msa0500640:intron 40.0%
GAAACCCCCGATGTAATAAT+GGG + chr3_4:41181819-41181838 None:intergenic 40.0%
AGAAACCCCCGATGTAATAA+TGG + chr3_4:41181820-41181839 None:intergenic 40.0%
AGTCTCCTGTTATGAAGCAT+TGG + chr3_4:41181899-41181918 None:intergenic 40.0%
GTTAGAGGATTTCTGTGACT+TGG - chr3_4:41181933-41181952 Msa0500640:intron 40.0%
CATCTGTTTGATCCATAGTC+AGG - chr3_4:41182230-41182249 Msa0500640:five_prime_UTR 40.0%
ACTCTTGTAGAAATAACCCC+AGG + chr3_4:41182264-41182283 None:intergenic 40.0%
!!! AGCACTGACGACACTTTTGA+TGG - chr3_4:41177897-41177916 Msa0500640:three_prime_UTR 45.0%
GTAATCATGTGTGTCCGTGT+TGG + chr3_4:41177952-41177971 None:intergenic 45.0%
GTTTGGACTGACGATGAGTT+TGG + chr3_4:41178299-41178318 None:intergenic 45.0%
CAAGCCCATTATTGAGCTAC+GGG - chr3_4:41178318-41178337 Msa0500640:intron 45.0%
!!! CTACGGGCGACCTTTTTTTT+TGG - chr3_4:41178334-41178353 Msa0500640:intron 45.0%
ATACACGGAGGAACATATCG+CGG - chr3_4:41178462-41178481 Msa0500640:CDS 45.0%
!! AAACCATTGCTTTGAGGGTG+GGG + chr3_4:41178524-41178543 None:intergenic 45.0%
!! CAAAACCATTGCTTTGAGGG+TGG + chr3_4:41178526-41178545 None:intergenic 45.0%
! CAGCTATTTGACGGACACAA+TGG - chr3_4:41178703-41178722 Msa0500640:CDS 45.0%
TGCTGCTGCAATTTATGCCA+AGG - chr3_4:41178729-41178748 Msa0500640:CDS 45.0%
TCTGTTGAGATCAGGAGGAA+TGG + chr3_4:41178782-41178801 None:intergenic 45.0%
TCATCTCTGTTGAGATCAGG+AGG + chr3_4:41178787-41178806 None:intergenic 45.0%
CACTCATCTCTGTTGAGATC+AGG + chr3_4:41178790-41178809 None:intergenic 45.0%
CTGATCTCAACAGAGATGAG+TGG - chr3_4:41178788-41178807 Msa0500640:CDS 45.0%
GTGTAGCAGTGTACCAAAAG+AGG + chr3_4:41179111-41179130 None:intergenic 45.0%
AGAATCATCAGTCATGGCTC+AGG + chr3_4:41179370-41179389 None:intergenic 45.0%
! ATACTTGAACCTTCTGAGGG+CGG - chr3_4:41179556-41179575 Msa0500640:intron 45.0%
! GAAGTTGGTCGGCTAAATAC+AGG - chr3_4:41179748-41179767 Msa0500640:intron 45.0%
TTGTGTCTCTCTCGATCCAT+TGG - chr3_4:41180302-41180321 Msa0500640:intron 45.0%
! CTCTCGATCCATTGGTGATA+TGG - chr3_4:41180310-41180329 Msa0500640:intron 45.0%
ATACAGCTTTCCAATGCTGG+AGG - chr3_4:41180852-41180871 Msa0500640:intron 45.0%
AACAAGTCTTCCTCCAGCAT+TGG + chr3_4:41180865-41180884 None:intergenic 45.0%
! TTATCAGCAGTGATGGAGTC+TGG - chr3_4:41180883-41180902 Msa0500640:intron 45.0%
! TATCAGCAGTGATGGAGTCT+GGG - chr3_4:41180884-41180903 Msa0500640:intron 45.0%
GGATGCTCTAACTGCAGAAA+TGG - chr3_4:41180905-41180924 Msa0500640:intron 45.0%
ATGGTCCTTGATTGTTGTCG+TGG - chr3_4:41180924-41180943 Msa0500640:intron 45.0%
ACATGCCACGACAACAATCA+AGG + chr3_4:41180932-41180951 None:intergenic 45.0%
TGATTGTTGTCGTGGCATGT+CGG - chr3_4:41180932-41180951 Msa0500640:intron 45.0%
AGAAGTAGGTGGTTTCTCCT+GGG + chr3_4:41181157-41181176 None:intergenic 45.0%
ACGTTGAGCCAGATATGGTA+CGG - chr3_4:41181268-41181287 Msa0500640:five_prime_UTR 45.0%
TATGGTACGGGAACTATACG+AGG - chr3_4:41181281-41181300 Msa0500640:five_prime_UTR 45.0%
GATCTGCCTTGCTTTCAGAA+AGG - chr3_4:41181307-41181326 Msa0500640:intron 45.0%
GCCTTGCTTTCAGAAAGGTT+TGG - chr3_4:41181312-41181331 Msa0500640:intron 45.0%
! TCTAGTTGGCTCTCTTGACA+TGG - chr3_4:41181363-41181382 Msa0500640:intron 45.0%
AGTAGAGATTAAACCTGGGG+AGG - chr3_4:41181469-41181488 Msa0500640:intron 45.0%
GTAGAGATTAAACCTGGGGA+GGG - chr3_4:41181470-41181489 Msa0500640:intron 45.0%
!! GGAGGGTATTTCAGTACATG+AGG - chr3_4:41181487-41181506 Msa0500640:intron 45.0%
AAGAAGCCATGGAAGGGAAA+CGG - chr3_4:41181579-41181598 Msa0500640:intron 45.0%
TGATATCCGTTTCCCTTCCA+TGG + chr3_4:41181588-41181607 None:intergenic 45.0%
ATGGAAGGGAAACGGATATC+AGG - chr3_4:41181587-41181606 Msa0500640:intron 45.0%
TAATGGGAGTCACAGTTGCT+TGG + chr3_4:41181803-41181822 None:intergenic 45.0%
GACTCCCATTATTACATCGG+GGG - chr3_4:41181812-41181831 Msa0500640:intron 45.0%
ATCGGGGGTTTCTCAGAATA+AGG - chr3_4:41181827-41181846 Msa0500640:intron 45.0%
GAATATGAACCACCCAAGAG+TGG - chr3_4:41181963-41181982 Msa0500640:intron 45.0%
TGGAATGCTCAACAGGATGT+CGG - chr3_4:41182006-41182025 Msa0500640:intron 45.0%
!!! TTTTATTTTACTTATTATTT+TGG - chr3_4:41178104-41178123 Msa0500640:three_prime_UTR 5.0%
! ACGCTTCAACAGCACCGAAA+GGG + chr3_4:41177660-41177679 None:intergenic 50.0%
GTGTCTGGGTGGTGTTTCAT+AGG - chr3_4:41178020-41178039 Msa0500640:three_prime_UTR 50.0%
GTCGCCCGTAGCTCAATAAT+GGG + chr3_4:41178325-41178344 None:intergenic 50.0%
TCGCGGACGTATTTGTGCAA+TGG - chr3_4:41178479-41178498 Msa0500640:CDS 50.0%
GTGCAATGGCAAGTACCTTC+TGG - chr3_4:41178493-41178512 Msa0500640:CDS 50.0%
! TACTTGAACCTTCTGAGGGC+GGG - chr3_4:41179557-41179576 Msa0500640:intron 50.0%
CTTGTCAGCAGATCATCGAC+TGG - chr3_4:41179588-41179607 Msa0500640:intron 50.0%
ACTTCTAGTGGGGGTGAAGT+TGG - chr3_4:41179733-41179752 Msa0500640:intron 50.0%
GTTGGTCGGCTAAATACAGG+CGG - chr3_4:41179751-41179770 Msa0500640:intron 50.0%
! AGGTTGGTCCGTTGAGATGT+TGG - chr3_4:41180270-41180289 Msa0500640:five_prime_UTR 50.0%
AGATGACACAACCTGCATCG+TGG - chr3_4:41181119-41181138 Msa0500640:intron 50.0%
CGTGGTCGATATATTACCCC+AGG - chr3_4:41181137-41181156 Msa0500640:intron 50.0%
GAAGTAGGTGGTTTCTCCTG+GGG + chr3_4:41181156-41181175 None:intergenic 50.0%
CAGAAGTAGGTGGTTTCTCC+TGG + chr3_4:41181158-41181177 None:intergenic 50.0%
! TGTGTTGGTGCAGAAGTAGG+TGG + chr3_4:41181168-41181187 None:intergenic 50.0%
CGTTGAGCCAGATATGGTAC+GGG - chr3_4:41181269-41181288 Msa0500640:five_prime_UTR 50.0%
GTACGGGAACTATACGAGGA+AGG - chr3_4:41181285-41181304 Msa0500640:five_prime_UTR 50.0%
TGTACTGAAATACCCTCCCC+AGG + chr3_4:41181485-41181504 None:intergenic 50.0%
CAAAGGAAAGGTCCATCCCA+GGG + chr3_4:41181539-41181558 None:intergenic 50.0%
CAGAACCTTTCGCCACTCTT+GGG + chr3_4:41181978-41181997 None:intergenic 50.0%
ACAGAACCTTTCGCCACTCT+TGG + chr3_4:41181979-41181998 None:intergenic 50.0%
AATGCTCAACAGGATGTCGG+AGG - chr3_4:41182009-41182028 Msa0500640:intron 50.0%
! CGCTTCAACAGCACCGAAAG+GGG + chr3_4:41177659-41177678 None:intergenic 55.0%
! CACGCTTCAACAGCACCGAA+AGG + chr3_4:41177661-41177680 None:intergenic 55.0%
CGAGTTGTCAGGGTTGTGTC+TGG - chr3_4:41177998-41178017 Msa0500640:three_prime_UTR 55.0%
TCAGGGTTGTGTCTGGTGTC+TGG - chr3_4:41178005-41178024 Msa0500640:three_prime_UTR 55.0%
CAGGGTTGTGTCTGGTGTCT+GGG - chr3_4:41178006-41178025 Msa0500640:three_prime_UTR 55.0%
GGTCGCCCGTAGCTCAATAA+TGG + chr3_4:41178326-41178345 None:intergenic 55.0%
!! ATTGCTTTGAGGGTGGGGTG+GGG + chr3_4:41178519-41178538 None:intergenic 55.0%
!! CATTGCTTTGAGGGTGGGGT+GGG + chr3_4:41178520-41178539 None:intergenic 55.0%
! TTGCCAAGGGCTTTGGTTGC+TGG - chr3_4:41178820-41178839 Msa0500640:CDS 55.0%
AAGCCAGCAACCAAAGCCCT+TGG + chr3_4:41178826-41178845 None:intergenic 55.0%
TGGTACACTGCTACACTCCC+TGG - chr3_4:41179115-41179134 Msa0500640:CDS 55.0%
TAATGAAGCCCGCCCTCAGA+AGG + chr3_4:41179568-41179587 None:intergenic 55.0%
AGGGTGCGCATCACTTCTAG+TGG - chr3_4:41179721-41179740 Msa0500640:five_prime_UTR 55.0%
GGGTGCGCATCACTTCTAGT+GGG - chr3_4:41179722-41179741 Msa0500640:five_prime_UTR 55.0%
GGTGCGCATCACTTCTAGTG+GGG - chr3_4:41179723-41179742 Msa0500640:five_prime_UTR 55.0%
GTGCGCATCACTTCTAGTGG+GGG - chr3_4:41179724-41179743 Msa0500640:five_prime_UTR 55.0%
! CTAGTGGGGGTGAAGTTGGT+CGG - chr3_4:41179737-41179756 Msa0500640:intron 55.0%
! AAATACAGGCGGAGGTGCAG+AGG - chr3_4:41179762-41179781 Msa0500640:intron 55.0%
CCACCAGGCCAACATCTCAA+CGG + chr3_4:41180281-41180300 None:intergenic 55.0%
TTGTTGTCGTGGCATGTCGG+CGG - chr3_4:41180935-41180954 Msa0500640:intron 55.0%
! ATGAGGGTGCGCCTAACGTA+AGG - chr3_4:41181504-41181523 Msa0500640:intron 55.0%
GGACGCGGTTTCCTTACGTT+AGG + chr3_4:41181518-41181537 None:intergenic 55.0%
GCAAAGGAAAGGTCCATCCC+AGG + chr3_4:41181540-41181559 None:intergenic 55.0%
AACCACCCAAGAGTGGCGAA+AGG - chr3_4:41181970-41181989 Msa0500640:intron 55.0%
AACCTTTCGCCACTCTTGGG+TGG + chr3_4:41181975-41181994 None:intergenic 55.0%
TGCGCATACAAGTGGCAGTG+TGG + chr3_4:41182288-41182307 None:intergenic 55.0%
GGTTGTGTCTGGTGTCTGGG+TGG - chr3_4:41178009-41178028 Msa0500640:three_prime_UTR 60.0%
!! CCATTGCTTTGAGGGTGGGG+TGG + chr3_4:41178521-41178540 None:intergenic 60.0%
CCACCCCACCCTCAAAGCAA+TGG - chr3_4:41178518-41178537 Msa0500640:CDS 60.0%
AGTGGGTAGCAGCGTTGCCA+AGG - chr3_4:41178806-41178825 Msa0500640:CDS 60.0%
GTGGGTAGCAGCGTTGCCAA+GGG - chr3_4:41178807-41178826 Msa0500640:CDS 60.0%
AGCAGCGTTGCCAAGGGCTT+TGG - chr3_4:41178813-41178832 Msa0500640:CDS 60.0%
GGTCGGCTAAATACAGGCGG+AGG - chr3_4:41179754-41179773 Msa0500640:intron 60.0%
GGTCCGTTGAGATGTTGGCC+TGG - chr3_4:41180275-41180294 Msa0500640:five_prime_UTR 60.0%
! CCGTTGAGATGTTGGCCTGG+TGG - chr3_4:41180278-41180297 Msa0500640:five_prime_UTR 60.0%
CGAGAGAGACACAAGCCACC+AGG + chr3_4:41180296-41180315 None:intergenic 60.0%
ACGTAAGGAAACCGCGTCCC+TGG - chr3_4:41181519-41181538 Msa0500640:intron 60.0%
CGTAAGGAAACCGCGTCCCT+GGG - chr3_4:41181520-41181539 Msa0500640:intron 60.0%
AAAGGTCCATCCCAGGGACG+CGG + chr3_4:41181533-41181552 None:intergenic 60.0%
GCCACTTGTATGCGCAGTGC+AGG - chr3_4:41182292-41182311 Msa0500640:five_prime_UTR 60.0%
GCCTGCACTGCGCATACAAG+TGG + chr3_4:41182296-41182315 None:intergenic 60.0%
TTGTCGTGGCATGTCGGCGG+AGG - chr3_4:41180938-41180957 Msa0500640:intron 65.0%
AGGAAACCGCGTCCCTGGGA+TGG - chr3_4:41181524-41181543 Msa0500640:intron 65.0%
GAGGGTGGGGTGGGGCCAGA+AGG + chr3_4:41178511-41178530 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 41177645 41182373 41177645 ID=Msa0500640;Name=Msa0500640
chr3_4 mRNA 41177645 41182373 41177645 ID=Msa0500640-mRNA-1;Parent=Msa0500640;Name=Msa0500640-mRNA-1;_AED=0.08;_eAED=0.08;_QI=643|1|1|1|0.87|1|9|513|234
chr3_4 exon 41177645 41178249 41177645 ID=Msa0500640-mRNA-1:exon:8532;Parent=Msa0500640-mRNA-1
chr3_4 exon 41178410 41178609 41178410 ID=Msa0500640-mRNA-1:exon:8531;Parent=Msa0500640-mRNA-1
chr3_4 exon 41178690 41178925 41178690 ID=Msa0500640-mRNA-1:exon:8530;Parent=Msa0500640-mRNA-1
chr3_4 exon 41179035 41179160 41179035 ID=Msa0500640-mRNA-1:exon:8529;Parent=Msa0500640-mRNA-1
chr3_4 exon 41179639 41179746 41179639 ID=Msa0500640-mRNA-1:exon:8528;Parent=Msa0500640-mRNA-1
chr3_4 exon 41180235 41180298 41180235 ID=Msa0500640-mRNA-1:exon:8527;Parent=Msa0500640-mRNA-1
chr3_4 exon 41180392 41180545 41180392 ID=Msa0500640-mRNA-1:exon:8526;Parent=Msa0500640-mRNA-1
chr3_4 exon 41181141 41181323 41181141 ID=Msa0500640-mRNA-1:exon:8525;Parent=Msa0500640-mRNA-1
chr3_4 exon 41182189 41182373 41182189 ID=Msa0500640-mRNA-1:exon:8524;Parent=Msa0500640-mRNA-1
chr3_4 five_prime_UTR 41182189 41182373 41182189 ID=Msa0500640-mRNA-1:five_prime_utr;Parent=Msa0500640-mRNA-1
chr3_4 five_prime_UTR 41181141 41181323 41181141 ID=Msa0500640-mRNA-1:five_prime_utr;Parent=Msa0500640-mRNA-1
chr3_4 five_prime_UTR 41180392 41180545 41180392 ID=Msa0500640-mRNA-1:five_prime_utr;Parent=Msa0500640-mRNA-1
chr3_4 five_prime_UTR 41180235 41180298 41180235 ID=Msa0500640-mRNA-1:five_prime_utr;Parent=Msa0500640-mRNA-1
chr3_4 five_prime_UTR 41179690 41179746 41179690 ID=Msa0500640-mRNA-1:five_prime_utr;Parent=Msa0500640-mRNA-1
chr3_4 CDS 41179639 41179689 41179639 ID=Msa0500640-mRNA-1:cds;Parent=Msa0500640-mRNA-1
chr3_4 CDS 41179035 41179160 41179035 ID=Msa0500640-mRNA-1:cds;Parent=Msa0500640-mRNA-1
chr3_4 CDS 41178690 41178925 41178690 ID=Msa0500640-mRNA-1:cds;Parent=Msa0500640-mRNA-1
chr3_4 CDS 41178410 41178609 41178410 ID=Msa0500640-mRNA-1:cds;Parent=Msa0500640-mRNA-1
chr3_4 CDS 41178158 41178249 41178158 ID=Msa0500640-mRNA-1:cds;Parent=Msa0500640-mRNA-1
chr3_4 three_prime_UTR 41177645 41178157 41177645 ID=Msa0500640-mRNA-1:three_prime_utr;Parent=Msa0500640-mRNA-1
Gene Sequence

>Msa0500640

ATGGATGTTGGTGAATTTATTGTCCCTGTACCATATGTAAAGCAAGTGAAGCTTTCCAATGCTGGAGGAAGACTTGTTATCAGCAGTGATGGAGTCTGGGATGCTCTAACTGCAGAAATGGTCCTTGATTGTTGTCGTGGCATGTCGGCGGAGGCTGCAGCACCACATATTGTAAAAGAATCTTTGCAAGCAAAGGGACTTAGAGATGACACAACCTGCATCGTGGTCGATATATTACCCCAGGAGAAACCACCTACTTCTGCACCAACACAAAAGAAACCGGTAAAAGGAATGTTGAAGGCCATTTTCCGCAAAAAGTCCTCTGAGTCATCTTCGTATGTTGAAAAAGAATACGTTGAGCCAGATATGGTACGGGAACTATACGAGGAAGGATCTGCCTTGCTTTCAGAAAGGTTTGAAACAAAATATCCACTCTGCAACATGTTCAAGTTGTTCATGTGTGCAGTGTGTCAAGTAGAGATTAAACCTGGGGAGGGTATTTCAGTACATGAGGGTGCGCCTAACGTAAGGAAACCGCGTCCCTGGGATGGACCTTTCCTTTGCTTAAGTTGCCAAAAGAAGAAAGAAGCCATGGAAGGGAAACGGATATCAGAGATTGTTCATATAACGCAAAAGTCAAACTTCCAAGCAACTGTGACTCCCATTATTACATCGGGGGTTTCTCAGAATAAGGATTCATTTTGA
Protein sequence

>Msa0500640

MDVGEFIVPVPYVKQVKLSNAGGRLVISSDGVWDALTAEMVLDCCRGMSAEAAAPHIVKESLQAKGLRDDTTCIVVDILPQEKPPTSAPTQKKPVKGMLKAIFRKKSSESSSYVEKEYVEPDMVRELYEEGSALLSERFETKYPLCNMFKLFMCAVCQVEIKPGEGISVHEGAPNVRKPRPWDGPFLCLSCQKKKEAMEGKRISEIVHITQKSNFQATVTPIITSGVSQNKDSF*