Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080290 | XP_003591211.1 | 100.000 | 165 | 0 | 0 | 1 | 165 | 1 | 165 | 2.33e-119 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080290 | sp|Q8LGG8|USPAL_ARATH | 31.944 | 144 | 93 | 4 | 24 | 164 | 30 | 171 | 1.54e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080290 | G7I9H1 | 100.000 | 165 | 0 | 0 | 1 | 165 | 1 | 165 | 1.11e-119 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0080290 | Msa0080360 | 0.987097 | 4.787631e-169 | -8.615850e-47 |
| Msa0080290 | Msa0131800 | 0.853205 | 2.786624e-61 | -8.615850e-47 |
| Msa0080290 | Msa0173260 | 0.884589 | 1.685516e-71 | -8.615850e-47 |
| Msa0080290 | Msa0434890 | 0.802324 | 5.922765e-49 | -8.615850e-47 |
| Msa0080290 | Msa0709820 | 0.805378 | 1.374262e-49 | -8.615850e-47 |
| Msa0080290 | Msa1402000 | 0.863814 | 1.902646e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080290 | MtrunA17_Chr1g0192651 | 100.000 | 165 | 0 | 0 | 1 | 165 | 1 | 165 | 2.14e-123 | 343 |
| Msa0080290 | MtrunA17_Chr1g0194801 | 53.247 | 154 | 66 | 3 | 9 | 157 | 6 | 158 | 3.20e-56 | 174 |
| Msa0080290 | MtrunA17_Chr1g0176311 | 40.741 | 162 | 83 | 3 | 10 | 158 | 23 | 184 | 1.98e-34 | 119 |
| Msa0080290 | MtrunA17_Chr1g0176321 | 38.690 | 168 | 84 | 4 | 10 | 158 | 4 | 171 | 8.67e-33 | 114 |
| Msa0080290 | MtrunA17_Chr1g0195661 | 40.132 | 152 | 88 | 2 | 11 | 159 | 14 | 165 | 2.24e-32 | 113 |
| Msa0080290 | MtrunA17_Chr5g0427291 | 37.037 | 162 | 84 | 5 | 11 | 155 | 10 | 170 | 3.03e-30 | 108 |
| Msa0080290 | MtrunA17_Chr7g0269301 | 40.123 | 162 | 90 | 4 | 1 | 158 | 1 | 159 | 3.91e-27 | 100 |
| Msa0080290 | MtrunA17_Chr2g0323291 | 30.539 | 167 | 102 | 4 | 9 | 163 | 25 | 189 | 1.09e-21 | 87.4 |
| Msa0080290 | MtrunA17_Chr5g0433951 | 33.962 | 159 | 89 | 5 | 13 | 160 | 9 | 162 | 6.64e-19 | 79.0 |
| Msa0080290 | MtrunA17_Chr4g0001641 | 52.381 | 63 | 30 | 0 | 93 | 155 | 3 | 65 | 1.65e-18 | 75.1 |
| Msa0080290 | MtrunA17_Chr2g0294421 | 31.250 | 160 | 94 | 4 | 7 | 155 | 3 | 157 | 1.22e-17 | 75.5 |
| Msa0080290 | MtrunA17_Chr6g0450171 | 27.485 | 171 | 110 | 5 | 6 | 164 | 3 | 171 | 3.27e-17 | 74.7 |
| Msa0080290 | MtrunA17_Chr4g0008801 | 34.194 | 155 | 92 | 4 | 9 | 155 | 5 | 157 | 1.69e-16 | 72.4 |
| Msa0080290 | MtrunA17_Chr4g0032261 | 31.902 | 163 | 101 | 4 | 7 | 161 | 3 | 163 | 3.74e-14 | 66.2 |
| Msa0080290 | MtrunA17_Chr7g0240701 | 31.613 | 155 | 96 | 4 | 9 | 155 | 5 | 157 | 1.25e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080290 | AT3G62550.1 | 50.993 | 151 | 71 | 1 | 9 | 156 | 7 | 157 | 5.83e-52 | 163 |
| Msa0080290 | AT3G11930.2 | 38.922 | 167 | 88 | 4 | 9 | 161 | 33 | 199 | 1.87e-34 | 120 |
| Msa0080290 | AT3G11930.1 | 39.157 | 166 | 88 | 4 | 9 | 161 | 33 | 198 | 2.11e-34 | 120 |
| Msa0080290 | AT3G11930.4 | 38.690 | 168 | 88 | 5 | 9 | 161 | 33 | 200 | 1.02e-33 | 118 |
| Msa0080290 | AT3G58450.1 | 38.650 | 163 | 88 | 4 | 11 | 161 | 32 | 194 | 7.92e-32 | 113 |
| Msa0080290 | AT3G58450.2 | 39.375 | 160 | 84 | 3 | 11 | 161 | 32 | 187 | 4.05e-31 | 111 |
| Msa0080290 | AT1G09740.2 | 37.654 | 162 | 91 | 3 | 11 | 162 | 10 | 171 | 1.25e-30 | 109 |
| Msa0080290 | AT1G09740.1 | 37.654 | 162 | 91 | 3 | 11 | 162 | 10 | 171 | 1.25e-30 | 109 |
| Msa0080290 | AT2G47710.1 | 36.875 | 160 | 92 | 4 | 5 | 158 | 3 | 159 | 6.59e-30 | 107 |
| Msa0080290 | AT3G11930.3 | 33.679 | 193 | 88 | 5 | 9 | 161 | 33 | 225 | 3.62e-28 | 104 |
| Msa0080290 | AT1G68300.1 | 36.242 | 149 | 92 | 3 | 9 | 155 | 10 | 157 | 5.46e-27 | 99.8 |
| Msa0080290 | AT3G17020.1 | 36.025 | 161 | 84 | 6 | 8 | 155 | 6 | 160 | 3.01e-20 | 82.4 |
| Msa0080290 | AT1G11360.2 | 29.586 | 169 | 104 | 5 | 9 | 165 | 38 | 203 | 2.38e-18 | 79.3 |
| Msa0080290 | AT1G11360.1 | 29.586 | 169 | 104 | 5 | 9 | 165 | 38 | 203 | 2.38e-18 | 79.3 |
| Msa0080290 | AT1G11360.4 | 29.586 | 169 | 104 | 5 | 9 | 165 | 38 | 203 | 2.38e-18 | 79.3 |
| Msa0080290 | AT1G11360.3 | 29.586 | 169 | 104 | 5 | 9 | 165 | 38 | 203 | 2.38e-18 | 79.3 |
| Msa0080290 | AT3G01520.1 | 31.944 | 144 | 93 | 4 | 24 | 164 | 30 | 171 | 1.57e-17 | 75.9 |
| Msa0080290 | AT5G14680.1 | 29.940 | 167 | 103 | 5 | 10 | 164 | 7 | 171 | 8.98e-17 | 73.9 |
| Msa0080290 | AT3G03270.2 | 30.818 | 159 | 94 | 5 | 8 | 155 | 4 | 157 | 2.04e-15 | 69.7 |
| Msa0080290 | AT3G53990.1 | 28.302 | 159 | 96 | 4 | 9 | 155 | 5 | 157 | 3.19e-12 | 61.6 |
| Msa0080290 | AT3G25930.1 | 29.012 | 162 | 87 | 8 | 9 | 156 | 2 | 149 | 3.24e-11 | 58.5 |
Find 55 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTCCAGTGGTTGATTT+TGG | 0.145041 | 1_2:+58576394 | None:intergenic |
| TTTCAAATATTAAATGATAA+AGG | 0.289136 | 1_2:-58576230 | Msa0080290:three_prime_UTR |
| GTTGTTTATTCTGCCTTTGA+TGG | 0.302678 | 1_2:-58577038 | Msa0080290:CDS |
| TTTCACACTGCTTGATAATT+CGG | 0.344578 | 1_2:+58577210 | None:intergenic |
| GGCTTCTTCACAATCAAAAC+AGG | 0.346785 | 1_2:+58576415 | None:intergenic |
| ACAAGTTGCTGATTGTGTTT+TGG | 0.353665 | 1_2:-58576869 | Msa0080290:CDS |
| GCTTGTCTTGTTCCTTCATA+AGG | 0.358103 | 1_2:-58576262 | Msa0080290:three_prime_UTR |
| GGGTGTTGATATCTTGGTTA+TGG | 0.361677 | 1_2:-58576634 | Msa0080290:CDS |
| GCTTAACATAGAGGAGAATA+AGG | 0.362554 | 1_2:+58577069 | None:intergenic |
| GAGGAGAATAAGGTGATCTT+TGG | 0.363644 | 1_2:+58577079 | None:intergenic |
| TTGCTATGAACATGTCCTTT+GGG | 0.364433 | 1_2:-58576289 | Msa0080290:three_prime_UTR |
| ATTGCTATGAACATGTCCTT+TGG | 0.383983 | 1_2:-58576290 | Msa0080290:three_prime_UTR |
| CACATCATTACAGACTATCT+TGG | 0.392607 | 1_2:+58576840 | None:intergenic |
| CACATGGTGCCTCAAGAACT+TGG | 0.402802 | 1_2:-58577114 | Msa0080290:CDS |
| AAAAGATATATTCCTTATGA+AGG | 0.407539 | 1_2:+58576250 | None:intergenic |
| GGTGTTGATATCTTGGTTAT+GGG | 0.433422 | 1_2:-58576633 | Msa0080290:CDS |
| AAACACAATCAGCAACTTGT+TGG | 0.448947 | 1_2:+58576872 | None:intergenic |
| CCGTTATGTCAGAAGAGAAT+AGG | 0.454640 | 1_2:+58576914 | None:intergenic |
| CCCTAGGGATGTAATCTGTC+AGG | 0.458933 | 1_2:-58576670 | Msa0080290:CDS |
| TATTCTGCCTTTGATGGCAC+AGG | 0.479279 | 1_2:-58577032 | Msa0080290:intron |
| TTGAATGGCAGGGCTTTCCT+TGG | 0.488782 | 1_2:-58576475 | Msa0080290:intron |
| ATCTTAATTGTCTCCTCCAG+TGG | 0.492223 | 1_2:+58576384 | None:intergenic |
| TTGTTGGCTATACTTCTCCA+TGG | 0.495342 | 1_2:+58576888 | None:intergenic |
| ATGGCTGGTATAACAGAAAA+CGG | 0.497259 | 1_2:-58577188 | Msa0080290:CDS |
| AATTATCAAGCAGTGTGAAA+TGG | 0.497338 | 1_2:-58577207 | Msa0080290:exon |
| GTGGAGACGAGGATAGAGAA+TGG | 0.517274 | 1_2:-58576696 | Msa0080290:CDS |
| GTTATGGGAAGCCACGGCTA+TGG | 0.518096 | 1_2:-58576618 | Msa0080290:CDS |
| GGATAGAGAATGGTGACCCT+AGG | 0.527492 | 1_2:-58576686 | Msa0080290:CDS |
| CCTATTCTCTTCTGACATAA+CGG | 0.542181 | 1_2:-58576914 | Msa0080290:CDS |
| ATCAAGCAGTGTGAAATGGC+TGG | 0.546216 | 1_2:-58577203 | Msa0080290:exon |
| AAATATTCAGTAGTTTGTAG+AGG | 0.555908 | 1_2:+58577277 | None:intergenic |
| ATCTTGGTTATGGGAAGCCA+CGG | 0.562584 | 1_2:-58576624 | Msa0080290:CDS |
| AGAAAACGGAAGAAGAATCA+TGG | 0.569970 | 1_2:-58577174 | Msa0080290:CDS |
| CACGAGGAGGCTTAACATAG+AGG | 0.577003 | 1_2:+58577060 | None:intergenic |
| AGTGGTTGCTCACACTTCCA+AGG | 0.579050 | 1_2:+58576458 | None:intergenic |
| TTAATTACCTGTGCCATCAA+AGG | 0.579397 | 1_2:+58577025 | None:intergenic |
| GATAGAGAATGGTGACCCTA+GGG | 0.580628 | 1_2:-58576685 | Msa0080290:CDS |
| ATTGTGATTCAAATTATGAT+CGG | 0.581201 | 1_2:+58577315 | None:intergenic |
| AAGAAGCCAAAATCAACCAC+TGG | 0.584975 | 1_2:-58576400 | Msa0080290:CDS |
| GCCTGACAGATTACATCCCT+AGG | 0.585000 | 1_2:+58576669 | None:intergenic |
| ATCATGGTAGCTATTGATGA+AGG | 0.586206 | 1_2:-58577158 | Msa0080290:CDS |
| TTCTGACATAACGGCAACCA+TGG | 0.586507 | 1_2:-58576905 | Msa0080290:CDS |
| ACAAGACAAGCACAACCCAA+AGG | 0.608357 | 1_2:+58576274 | None:intergenic |
| TCGGTTTCAGATAGATCACA+AGG | 0.621880 | 1_2:+58577229 | None:intergenic |
| ACGGCTATGGTGTCATCAAG+AGG | 0.638531 | 1_2:-58576605 | Msa0080290:intron |
| AAGCCAAAATCAACCACTGG+AGG | 0.644827 | 1_2:-58576397 | Msa0080290:CDS |
| TGTTCATAGCAATAGCAACA+AGG | 0.651321 | 1_2:+58576300 | None:intergenic |
| GCTTCTTCACAATCAAAACA+GGG | 0.652447 | 1_2:+58576416 | None:intergenic |
| ATATGGTTTAGGTGGAGACG+AGG | 0.658827 | 1_2:-58576707 | Msa0080290:intron |
| CCTGACAGATTACATCCCTA+GGG | 0.659449 | 1_2:+58576670 | None:intergenic |
| AGAGCATTTATGCTCTCACA+TGG | 0.669047 | 1_2:-58577130 | Msa0080290:CDS |
| TCTTGATGACACCATAGCCG+TGG | 0.679887 | 1_2:+58576607 | None:intergenic |
| ACTTCACATTCTGTGCACAG+TGG | 0.689187 | 1_2:+58576440 | None:intergenic |
| GCAGAATAAACAACACGAGG+AGG | 0.692643 | 1_2:+58577047 | None:intergenic |
| AAGGCAGAATAAACAACACG+AGG | 0.733599 | 1_2:+58577044 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAAAAAACAAAATA+AGG | + | chr1_2:58577217-58577236 | None:intergenic | 10.0% |
| !! | TTTCAAATATTAAATGATAA+AGG | - | chr1_2:58577330-58577349 | Msa0080290:five_prime_UTR | 10.0% |
| !! | AAAAGAAAAAAAACAAAATA+AGG | + | chr1_2:58577217-58577236 | None:intergenic | 10.0% |
| !! | TTTCAAATATTAAATGATAA+AGG | - | chr1_2:58577330-58577349 | Msa0080290:five_prime_UTR | 10.0% |
| !! | TTAATAATTAATCTGTGATA+TGG | - | chr1_2:58576836-58576855 | Msa0080290:CDS | 15.0% |
| !! | TGTGAATTGTAAATTTAATT+TGG | - | chr1_2:58577047-58577066 | Msa0080290:CDS | 15.0% |
| !! | TTAATAATTAATCTGTGATA+TGG | - | chr1_2:58576836-58576855 | Msa0080290:CDS | 15.0% |
| !! | TGTGAATTGTAAATTTAATT+TGG | - | chr1_2:58577047-58577066 | Msa0080290:CDS | 15.0% |
| !! | ATTGTGATTCAAATTATGAT+CGG | + | chr1_2:58576248-58576267 | None:intergenic | 20.0% |
| !! | GGTAATTAAACAAAATTTCA+TGG | - | chr1_2:58576549-58576568 | Msa0080290:intron | 20.0% |
| !! | TTGTATCATATATATGTTTC+AGG | - | chr1_2:58576620-58576639 | Msa0080290:CDS | 20.0% |
| !! | ACTATAGATAAAAATGAGAA+GGG | + | chr1_2:58576809-58576828 | None:intergenic | 20.0% |
| !! | AACTATAGATAAAAATGAGA+AGG | + | chr1_2:58576810-58576829 | None:intergenic | 20.0% |
| !!! | TTGTAAATTTAATTTGGTTC+TGG | - | chr1_2:58577053-58577072 | Msa0080290:CDS | 20.0% |
| !! | AAAAGATATATTCCTTATGA+AGG | + | chr1_2:58577313-58577332 | None:intergenic | 20.0% |
| !! | ATTGTGATTCAAATTATGAT+CGG | + | chr1_2:58576248-58576267 | None:intergenic | 20.0% |
| !! | GGTAATTAAACAAAATTTCA+TGG | - | chr1_2:58576549-58576568 | Msa0080290:intron | 20.0% |
| !! | TTGTATCATATATATGTTTC+AGG | - | chr1_2:58576620-58576639 | Msa0080290:CDS | 20.0% |
| !! | ACTATAGATAAAAATGAGAA+GGG | + | chr1_2:58576809-58576828 | None:intergenic | 20.0% |
| !! | AACTATAGATAAAAATGAGA+AGG | + | chr1_2:58576810-58576829 | None:intergenic | 20.0% |
| !!! | TTGTAAATTTAATTTGGTTC+TGG | - | chr1_2:58577053-58577072 | Msa0080290:CDS | 20.0% |
| !! | AAAAGATATATTCCTTATGA+AGG | + | chr1_2:58577313-58577332 | None:intergenic | 20.0% |
| !! | AAATATTCAGTAGTTTGTAG+AGG | + | chr1_2:58576286-58576305 | None:intergenic | 25.0% |
| ! | CTATAGATAAAAATGAGAAG+GGG | + | chr1_2:58576808-58576827 | None:intergenic | 25.0% |
| ! | ATTAATCTGTGATATGGTTT+AGG | - | chr1_2:58576842-58576861 | Msa0080290:CDS | 25.0% |
| !! | ATTTTTGTTAGAATGAGCTA+AGG | - | chr1_2:58577023-58577042 | Msa0080290:intron | 25.0% |
| !! | AAATATTCAGTAGTTTGTAG+AGG | + | chr1_2:58576286-58576305 | None:intergenic | 25.0% |
| ! | CTATAGATAAAAATGAGAAG+GGG | + | chr1_2:58576808-58576827 | None:intergenic | 25.0% |
| ! | ATTAATCTGTGATATGGTTT+AGG | - | chr1_2:58576842-58576861 | Msa0080290:CDS | 25.0% |
| !! | ATTTTTGTTAGAATGAGCTA+AGG | - | chr1_2:58577023-58577042 | Msa0080290:intron | 25.0% |
| ! | TTTCACACTGCTTGATAATT+CGG | + | chr1_2:58576353-58576372 | None:intergenic | 30.0% |
| AATTATCAAGCAGTGTGAAA+TGG | - | chr1_2:58576353-58576372 | Msa0080290:three_prime_UTR | 30.0% | |
| TTTGAAAAACCAAGTTCTTG+AGG | + | chr1_2:58576458-58576477 | None:intergenic | 30.0% | |
| !! | AAAAATGGGTGTTGATATCT+TGG | - | chr1_2:58576920-58576939 | Msa0080290:CDS | 30.0% |
| ! | TTTCACACTGCTTGATAATT+CGG | + | chr1_2:58576353-58576372 | None:intergenic | 30.0% |
| AATTATCAAGCAGTGTGAAA+TGG | - | chr1_2:58576353-58576372 | Msa0080290:three_prime_UTR | 30.0% | |
| TTTGAAAAACCAAGTTCTTG+AGG | + | chr1_2:58576458-58576477 | None:intergenic | 30.0% | |
| !! | AAAAATGGGTGTTGATATCT+TGG | - | chr1_2:58576920-58576939 | Msa0080290:CDS | 30.0% |
| ATGGCTGGTATAACAGAAAA+CGG | - | chr1_2:58576372-58576391 | Msa0080290:exon | 35.0% | |
| AGAAAACGGAAGAAGAATCA+TGG | - | chr1_2:58576386-58576405 | Msa0080290:exon | 35.0% | |
| ATCATGGTAGCTATTGATGA+AGG | - | chr1_2:58576402-58576421 | Msa0080290:CDS | 35.0% | |
| GCTTAACATAGAGGAGAATA+AGG | + | chr1_2:58576494-58576513 | None:intergenic | 35.0% | |
| GTTGTTTATTCTGCCTTTGA+TGG | - | chr1_2:58576522-58576541 | Msa0080290:intron | 35.0% | |
| TTAATTACCTGTGCCATCAA+AGG | + | chr1_2:58576538-58576557 | None:intergenic | 35.0% | |
| CCTATTCTCTTCTGACATAA+CGG | - | chr1_2:58576646-58576665 | Msa0080290:CDS | 35.0% | |
| AAACACAATCAGCAACTTGT+TGG | + | chr1_2:58576691-58576710 | None:intergenic | 35.0% | |
| !! | ACAAGTTGCTGATTGTGTTT+TGG | - | chr1_2:58576691-58576710 | Msa0080290:CDS | 35.0% |
| CACATCATTACAGACTATCT+TGG | + | chr1_2:58576723-58576742 | None:intergenic | 35.0% | |
| AATCTGTGATATGGTTTAGG+TGG | - | chr1_2:58576845-58576864 | Msa0080290:CDS | 35.0% | |
| TGTCAGGCTGTTCAAAAAAT+GGG | - | chr1_2:58576906-58576925 | Msa0080290:CDS | 35.0% | |
| !! | GGTGTTGATATCTTGGTTAT+GGG | - | chr1_2:58576927-58576946 | Msa0080290:intron | 35.0% |
| ! | TTCTGGCTGTTATTGTTGAA+TGG | - | chr1_2:58577070-58577089 | Msa0080290:CDS | 35.0% |
| GCTTCTTCACAATCAAAACA+GGG | + | chr1_2:58577147-58577166 | None:intergenic | 35.0% | |
| TGTTCATAGCAATAGCAACA+AGG | + | chr1_2:58577263-58577282 | None:intergenic | 35.0% | |
| ATTGCTATGAACATGTCCTT+TGG | - | chr1_2:58577270-58577289 | Msa0080290:five_prime_UTR | 35.0% | |
| TTGCTATGAACATGTCCTTT+GGG | - | chr1_2:58577271-58577290 | Msa0080290:five_prime_UTR | 35.0% | |
| ATGGCTGGTATAACAGAAAA+CGG | - | chr1_2:58576372-58576391 | Msa0080290:exon | 35.0% | |
| AGAAAACGGAAGAAGAATCA+TGG | - | chr1_2:58576386-58576405 | Msa0080290:exon | 35.0% | |
| ATCATGGTAGCTATTGATGA+AGG | - | chr1_2:58576402-58576421 | Msa0080290:CDS | 35.0% | |
| GCTTAACATAGAGGAGAATA+AGG | + | chr1_2:58576494-58576513 | None:intergenic | 35.0% | |
| GTTGTTTATTCTGCCTTTGA+TGG | - | chr1_2:58576522-58576541 | Msa0080290:intron | 35.0% | |
| TTAATTACCTGTGCCATCAA+AGG | + | chr1_2:58576538-58576557 | None:intergenic | 35.0% | |
| CCTATTCTCTTCTGACATAA+CGG | - | chr1_2:58576646-58576665 | Msa0080290:CDS | 35.0% | |
| AAACACAATCAGCAACTTGT+TGG | + | chr1_2:58576691-58576710 | None:intergenic | 35.0% | |
| !! | ACAAGTTGCTGATTGTGTTT+TGG | - | chr1_2:58576691-58576710 | Msa0080290:CDS | 35.0% |
| CACATCATTACAGACTATCT+TGG | + | chr1_2:58576723-58576742 | None:intergenic | 35.0% | |
| AATCTGTGATATGGTTTAGG+TGG | - | chr1_2:58576845-58576864 | Msa0080290:CDS | 35.0% | |
| TGTCAGGCTGTTCAAAAAAT+GGG | - | chr1_2:58576906-58576925 | Msa0080290:CDS | 35.0% | |
| !! | GGTGTTGATATCTTGGTTAT+GGG | - | chr1_2:58576927-58576946 | Msa0080290:intron | 35.0% |
| ! | TTCTGGCTGTTATTGTTGAA+TGG | - | chr1_2:58577070-58577089 | Msa0080290:CDS | 35.0% |
| GCTTCTTCACAATCAAAACA+GGG | + | chr1_2:58577147-58577166 | None:intergenic | 35.0% | |
| TGTTCATAGCAATAGCAACA+AGG | + | chr1_2:58577263-58577282 | None:intergenic | 35.0% | |
| ATTGCTATGAACATGTCCTT+TGG | - | chr1_2:58577270-58577289 | Msa0080290:five_prime_UTR | 35.0% | |
| TTGCTATGAACATGTCCTTT+GGG | - | chr1_2:58577271-58577290 | Msa0080290:five_prime_UTR | 35.0% | |
| TCGGTTTCAGATAGATCACA+AGG | + | chr1_2:58576334-58576353 | None:intergenic | 40.0% | |
| ! | AGAGCATTTATGCTCTCACA+TGG | - | chr1_2:58576430-58576449 | Msa0080290:CDS | 40.0% |
| GAGGAGAATAAGGTGATCTT+TGG | + | chr1_2:58576484-58576503 | None:intergenic | 40.0% | |
| AAGGCAGAATAAACAACACG+AGG | + | chr1_2:58576519-58576538 | None:intergenic | 40.0% | |
| CCGTTATGTCAGAAGAGAAT+AGG | + | chr1_2:58576649-58576668 | None:intergenic | 40.0% | |
| ! | TTGTTGGCTATACTTCTCCA+TGG | + | chr1_2:58576675-58576694 | None:intergenic | 40.0% |
| CTGTCAGGCTGTTCAAAAAA+TGG | - | chr1_2:58576905-58576924 | Msa0080290:CDS | 40.0% | |
| !! | GGGTGTTGATATCTTGGTTA+TGG | - | chr1_2:58576926-58576945 | Msa0080290:intron | 40.0% |
| GCTGTTATTGTTGAATGGCA+GGG | - | chr1_2:58577075-58577094 | Msa0080290:CDS | 40.0% | |
| GGCTTCTTCACAATCAAAAC+AGG | + | chr1_2:58577148-58577167 | None:intergenic | 40.0% | |
| AAGAAGCCAAAATCAACCAC+TGG | - | chr1_2:58577160-58577179 | Msa0080290:CDS | 40.0% | |
| ATCTTAATTGTCTCCTCCAG+TGG | + | chr1_2:58577179-58577198 | None:intergenic | 40.0% | |
| ! | GCTTGTCTTGTTCCTTCATA+AGG | - | chr1_2:58577298-58577317 | Msa0080290:five_prime_UTR | 40.0% |
| TCGGTTTCAGATAGATCACA+AGG | + | chr1_2:58576334-58576353 | None:intergenic | 40.0% | |
| ! | AGAGCATTTATGCTCTCACA+TGG | - | chr1_2:58576430-58576449 | Msa0080290:CDS | 40.0% |
| GAGGAGAATAAGGTGATCTT+TGG | + | chr1_2:58576484-58576503 | None:intergenic | 40.0% | |
| AAGGCAGAATAAACAACACG+AGG | + | chr1_2:58576519-58576538 | None:intergenic | 40.0% | |
| CCGTTATGTCAGAAGAGAAT+AGG | + | chr1_2:58576649-58576668 | None:intergenic | 40.0% | |
| ! | TTGTTGGCTATACTTCTCCA+TGG | + | chr1_2:58576675-58576694 | None:intergenic | 40.0% |
| CTGTCAGGCTGTTCAAAAAA+TGG | - | chr1_2:58576905-58576924 | Msa0080290:CDS | 40.0% | |
| !! | GGGTGTTGATATCTTGGTTA+TGG | - | chr1_2:58576926-58576945 | Msa0080290:intron | 40.0% |
| GCTGTTATTGTTGAATGGCA+GGG | - | chr1_2:58577075-58577094 | Msa0080290:CDS | 40.0% | |
| GGCTTCTTCACAATCAAAAC+AGG | + | chr1_2:58577148-58577167 | None:intergenic | 40.0% | |
| AAGAAGCCAAAATCAACCAC+TGG | - | chr1_2:58577160-58577179 | Msa0080290:CDS | 40.0% | |
| ATCTTAATTGTCTCCTCCAG+TGG | + | chr1_2:58577179-58577198 | None:intergenic | 40.0% | |
| ! | GCTTGTCTTGTTCCTTCATA+AGG | - | chr1_2:58577298-58577317 | Msa0080290:five_prime_UTR | 40.0% |
| ATCAAGCAGTGTGAAATGGC+TGG | - | chr1_2:58576357-58576376 | Msa0080290:three_prime_UTR | 45.0% | |
| GCAGAATAAACAACACGAGG+AGG | + | chr1_2:58576516-58576535 | None:intergenic | 45.0% | |
| ! | TATTCTGCCTTTGATGGCAC+AGG | - | chr1_2:58576528-58576547 | Msa0080290:intron | 45.0% |
| TTCTGACATAACGGCAACCA+TGG | - | chr1_2:58576655-58576674 | Msa0080290:CDS | 45.0% | |
| ATATGGTTTAGGTGGAGACG+AGG | - | chr1_2:58576853-58576872 | Msa0080290:CDS | 45.0% | |
| GATAGAGAATGGTGACCCTA+GGG | - | chr1_2:58576875-58576894 | Msa0080290:CDS | 45.0% | |
| CCTGACAGATTACATCCCTA+GGG | + | chr1_2:58576893-58576912 | None:intergenic | 45.0% | |
| ATCTTGGTTATGGGAAGCCA+CGG | - | chr1_2:58576936-58576955 | Msa0080290:intron | 45.0% | |
| GGCTGTTATTGTTGAATGGC+AGG | - | chr1_2:58577074-58577093 | Msa0080290:CDS | 45.0% | |
| ACTTCACATTCTGTGCACAG+TGG | + | chr1_2:58577123-58577142 | None:intergenic | 45.0% | |
| AAGCCAAAATCAACCACTGG+AGG | - | chr1_2:58577163-58577182 | Msa0080290:CDS | 45.0% | |
| !! | TCTCCTCCAGTGGTTGATTT+TGG | + | chr1_2:58577169-58577188 | None:intergenic | 45.0% |
| ACAAGACAAGCACAACCCAA+AGG | + | chr1_2:58577289-58577308 | None:intergenic | 45.0% | |
| ATCAAGCAGTGTGAAATGGC+TGG | - | chr1_2:58576357-58576376 | Msa0080290:three_prime_UTR | 45.0% | |
| GCAGAATAAACAACACGAGG+AGG | + | chr1_2:58576516-58576535 | None:intergenic | 45.0% | |
| ! | TATTCTGCCTTTGATGGCAC+AGG | - | chr1_2:58576528-58576547 | Msa0080290:intron | 45.0% |
| TTCTGACATAACGGCAACCA+TGG | - | chr1_2:58576655-58576674 | Msa0080290:CDS | 45.0% | |
| ATATGGTTTAGGTGGAGACG+AGG | - | chr1_2:58576853-58576872 | Msa0080290:CDS | 45.0% | |
| GATAGAGAATGGTGACCCTA+GGG | - | chr1_2:58576875-58576894 | Msa0080290:CDS | 45.0% | |
| CCTGACAGATTACATCCCTA+GGG | + | chr1_2:58576893-58576912 | None:intergenic | 45.0% | |
| ATCTTGGTTATGGGAAGCCA+CGG | - | chr1_2:58576936-58576955 | Msa0080290:intron | 45.0% | |
| GGCTGTTATTGTTGAATGGC+AGG | - | chr1_2:58577074-58577093 | Msa0080290:CDS | 45.0% | |
| ACTTCACATTCTGTGCACAG+TGG | + | chr1_2:58577123-58577142 | None:intergenic | 45.0% | |
| AAGCCAAAATCAACCACTGG+AGG | - | chr1_2:58577163-58577182 | Msa0080290:CDS | 45.0% | |
| !! | TCTCCTCCAGTGGTTGATTT+TGG | + | chr1_2:58577169-58577188 | None:intergenic | 45.0% |
| ACAAGACAAGCACAACCCAA+AGG | + | chr1_2:58577289-58577308 | None:intergenic | 45.0% | |
| CACATGGTGCCTCAAGAACT+TGG | - | chr1_2:58576446-58576465 | Msa0080290:CDS | 50.0% | |
| CACGAGGAGGCTTAACATAG+AGG | + | chr1_2:58576503-58576522 | None:intergenic | 50.0% | |
| GTGGAGACGAGGATAGAGAA+TGG | - | chr1_2:58576864-58576883 | Msa0080290:CDS | 50.0% | |
| GGATAGAGAATGGTGACCCT+AGG | - | chr1_2:58576874-58576893 | Msa0080290:CDS | 50.0% | |
| CCCTAGGGATGTAATCTGTC+AGG | - | chr1_2:58576890-58576909 | Msa0080290:CDS | 50.0% | |
| GCCTGACAGATTACATCCCT+AGG | + | chr1_2:58576894-58576913 | None:intergenic | 50.0% | |
| ! | TCTTGATGACACCATAGCCG+TGG | + | chr1_2:58576956-58576975 | None:intergenic | 50.0% |
| !! | ACGGCTATGGTGTCATCAAG+AGG | - | chr1_2:58576955-58576974 | Msa0080290:intron | 50.0% |
| TTGAATGGCAGGGCTTTCCT+TGG | - | chr1_2:58577085-58577104 | Msa0080290:CDS | 50.0% | |
| AGTGGTTGCTCACACTTCCA+AGG | + | chr1_2:58577105-58577124 | None:intergenic | 50.0% | |
| CACATGGTGCCTCAAGAACT+TGG | - | chr1_2:58576446-58576465 | Msa0080290:CDS | 50.0% | |
| CACGAGGAGGCTTAACATAG+AGG | + | chr1_2:58576503-58576522 | None:intergenic | 50.0% | |
| GTGGAGACGAGGATAGAGAA+TGG | - | chr1_2:58576864-58576883 | Msa0080290:CDS | 50.0% | |
| GGATAGAGAATGGTGACCCT+AGG | - | chr1_2:58576874-58576893 | Msa0080290:CDS | 50.0% | |
| CCCTAGGGATGTAATCTGTC+AGG | - | chr1_2:58576890-58576909 | Msa0080290:CDS | 50.0% | |
| GCCTGACAGATTACATCCCT+AGG | + | chr1_2:58576894-58576913 | None:intergenic | 50.0% | |
| ! | TCTTGATGACACCATAGCCG+TGG | + | chr1_2:58576956-58576975 | None:intergenic | 50.0% |
| !! | ACGGCTATGGTGTCATCAAG+AGG | - | chr1_2:58576955-58576974 | Msa0080290:intron | 50.0% |
| TTGAATGGCAGGGCTTTCCT+TGG | - | chr1_2:58577085-58577104 | Msa0080290:CDS | 50.0% | |
| AGTGGTTGCTCACACTTCCA+AGG | + | chr1_2:58577105-58577124 | None:intergenic | 50.0% | |
| GTTATGGGAAGCCACGGCTA+TGG | - | chr1_2:58576942-58576961 | Msa0080290:intron | 55.0% | |
| GTTATGGGAAGCCACGGCTA+TGG | - | chr1_2:58576942-58576961 | Msa0080290:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 58576225 | 58577357 | 58576225 | ID=Msa0080290;Name=Msa0080290 |
| chr1_2 | mRNA | 58576225 | 58577357 | 58576225 | ID=Msa0080290-mRNA-1;Parent=Msa0080290;Name=Msa0080290-mRNA-1;_AED=0.08;_eAED=0.08;_QI=147|1|1|1|1|1|4|162|165 |
| chr1_2 | exon | 58576225 | 58576486 | 58576225 | ID=Msa0080290-mRNA-1:exon:18801;Parent=Msa0080290-mRNA-1 |
| chr1_2 | exon | 58576606 | 58576718 | 58576606 | ID=Msa0080290-mRNA-1:exon:18800;Parent=Msa0080290-mRNA-1 |
| chr1_2 | exon | 58576834 | 58576940 | 58576834 | ID=Msa0080290-mRNA-1:exon:18799;Parent=Msa0080290-mRNA-1 |
| chr1_2 | exon | 58577033 | 58577357 | 58577033 | ID=Msa0080290-mRNA-1:exon:18798;Parent=Msa0080290-mRNA-1 |
| chr1_2 | five_prime_UTR | 58577211 | 58577357 | 58577211 | ID=Msa0080290-mRNA-1:five_prime_utr;Parent=Msa0080290-mRNA-1 |
| chr1_2 | CDS | 58577033 | 58577210 | 58577033 | ID=Msa0080290-mRNA-1:cds;Parent=Msa0080290-mRNA-1 |
| chr1_2 | CDS | 58576834 | 58576940 | 58576834 | ID=Msa0080290-mRNA-1:cds;Parent=Msa0080290-mRNA-1 |
| chr1_2 | CDS | 58576606 | 58576718 | 58576606 | ID=Msa0080290-mRNA-1:cds;Parent=Msa0080290-mRNA-1 |
| chr1_2 | CDS | 58576387 | 58576486 | 58576387 | ID=Msa0080290-mRNA-1:cds;Parent=Msa0080290-mRNA-1 |
| chr1_2 | three_prime_UTR | 58576225 | 58576386 | 58576225 | ID=Msa0080290-mRNA-1:three_prime_utr;Parent=Msa0080290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
