Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173260 | XP_003591211.1 | 99.394 | 165 | 1 | 0 | 1 | 165 | 1 | 165 | 8.43e-118 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173260 | sp|Q8LGG8|USPAL_ARATH | 31.944 | 144 | 93 | 4 | 24 | 164 | 30 | 171 | 1.83e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173260 | G7I9H1 | 99.394 | 165 | 1 | 0 | 1 | 165 | 1 | 165 | 4.03e-118 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032040 | Msa0173260 | -0.806982 | 6.313888e-50 | -8.615850e-47 |
| Msa0039270 | Msa0173260 | 0.809497 | 1.837727e-50 | -8.615850e-47 |
| Msa0080290 | Msa0173260 | 0.884589 | 1.685516e-71 | -8.615850e-47 |
| Msa0080360 | Msa0173260 | 0.889403 | 2.499342e-73 | -8.615850e-47 |
| Msa0129270 | Msa0173260 | 0.821017 | 5.047906e-53 | -8.615850e-47 |
| Msa0131800 | Msa0173260 | 0.930138 | 2.533916e-93 | -8.615850e-47 |
| Msa0173260 | Msa0192890 | 0.833046 | 6.676049e-56 | -8.615850e-47 |
| Msa0173260 | Msa0196530 | 0.804676 | 1.926961e-49 | -8.615850e-47 |
| Msa0173260 | Msa0223050 | 0.811408 | 7.107952e-51 | -8.615850e-47 |
| Msa0173260 | Msa0235020 | 0.846602 | 1.959360e-59 | -8.615850e-47 |
| Msa0173260 | Msa0238420 | 0.809461 | 1.871207e-50 | -8.615850e-47 |
| Msa0173260 | Msa0273420 | 0.845720 | 3.404983e-59 | -8.615850e-47 |
| Msa0173260 | Msa0302220 | 0.808550 | 2.931281e-50 | -8.615850e-47 |
| Msa0173260 | Msa0313680 | 0.837618 | 4.673292e-57 | -8.615850e-47 |
| Msa0173260 | Msa0375500 | 0.829973 | 3.813495e-55 | -8.615850e-47 |
| Msa0173260 | Msa0375550 | 0.811457 | 6.935484e-51 | -8.615850e-47 |
| Msa0173260 | Msa0384220 | 0.848142 | 7.399504e-60 | -8.615850e-47 |
| Msa0173260 | Msa0421100 | -0.820464 | 6.763982e-53 | -8.615850e-47 |
| Msa0173260 | Msa0424300 | 0.838130 | 3.453226e-57 | -8.615850e-47 |
| Msa0173260 | Msa0427850 | 0.810058 | 1.392359e-50 | -8.615850e-47 |
| Msa0173260 | Msa0434890 | 0.871376 | 7.165447e-67 | -8.615850e-47 |
| Msa0173260 | Msa0471210 | 0.853428 | 2.405146e-61 | -8.615850e-47 |
| Msa0173260 | Msa0474080 | 0.806877 | 6.643610e-50 | -8.615850e-47 |
| Msa0173260 | Msa0515930 | 0.837767 | 4.280362e-57 | -8.615850e-47 |
| Msa0173260 | Msa0709820 | 0.880722 | 4.342117e-70 | -8.615850e-47 |
| Msa0173260 | Msa0712440 | -0.832594 | 8.647385e-56 | -8.615850e-47 |
| Msa0173260 | Msa0715260 | 0.810007 | 1.427679e-50 | -8.615850e-47 |
| Msa0173260 | Msa0716600 | 0.804865 | 1.759620e-49 | -8.615850e-47 |
| Msa0173260 | Msa0735340 | 0.802076 | 6.660825e-49 | -8.615850e-47 |
| Msa0173260 | Msa0747500 | 0.833498 | 5.153373e-56 | -8.615850e-47 |
| Msa0173260 | Msa0757240 | 0.806543 | 7.816211e-50 | -8.615850e-47 |
| Msa0173260 | Msa0757990 | 0.811555 | 6.602859e-51 | -8.615850e-47 |
| Msa0173260 | Msa0758000 | 0.819825 | 9.478173e-53 | -8.615850e-47 |
| Msa0173260 | Msa0798230 | 0.808014 | 3.812410e-50 | -8.615850e-47 |
| Msa0173260 | Msa0830830 | -0.802088 | 6.623423e-49 | -8.615850e-47 |
| Msa0173260 | Msa0836740 | 0.804298 | 2.310230e-49 | -8.615850e-47 |
| Msa0173260 | Msa0878410 | 0.802514 | 5.412229e-49 | -8.615850e-47 |
| Msa0173260 | Msa0887000 | -0.811285 | 7.557668e-51 | -8.615850e-47 |
| Msa0173260 | Msa0896990 | 0.830168 | 3.419214e-55 | -8.615850e-47 |
| Msa0173260 | Msa0962260 | 0.806860 | 6.700893e-50 | -8.615850e-47 |
| Msa0173260 | Msa0996940 | 0.809648 | 1.705570e-50 | -8.615850e-47 |
| Msa0173260 | Msa1046220 | 0.829885 | 4.006888e-55 | -8.615850e-47 |
| Msa0173260 | Msa1050320 | -0.806176 | 9.338766e-50 | -8.615850e-47 |
| Msa0173260 | Msa1113210 | -0.812076 | 5.084293e-51 | -8.615850e-47 |
| Msa0173260 | Msa1171630 | 0.818070 | 2.374084e-52 | -8.615850e-47 |
| Msa0173260 | Msa1207000 | 0.837334 | 5.528000e-57 | -8.615850e-47 |
| Msa0173260 | Msa1207090 | 0.832335 | 1.002601e-55 | -8.615850e-47 |
| Msa0173260 | Msa1221170 | 0.822443 | 2.362813e-53 | -8.615850e-47 |
| Msa0173260 | Msa1221570 | 0.801123 | 1.044540e-48 | -8.615850e-47 |
| Msa0173260 | Msa1235760 | -0.833301 | 5.769338e-56 | -8.615850e-47 |
| Msa0173260 | Msa1235770 | -0.826590 | 2.494976e-54 | -8.615850e-47 |
| Msa0173260 | Msa1257170 | 0.842934 | 1.908726e-58 | -8.615850e-47 |
| Msa0173260 | Msa1258600 | 0.852214 | 5.346213e-61 | -8.615850e-47 |
| Msa0173260 | Msa1265500 | 0.824237 | 9.000633e-54 | -8.615850e-47 |
| Msa0173260 | Msa1266710 | 0.803562 | 3.284841e-49 | -8.615850e-47 |
| Msa0173260 | Msa1298440 | 0.840650 | 7.653636e-58 | -8.615850e-47 |
| Msa0173260 | Msa1302120 | 0.836198 | 1.077226e-56 | -8.615850e-47 |
| Msa0173260 | Msa1319440 | -0.810427 | 1.159237e-50 | -8.615850e-47 |
| Msa0173260 | Msa1357380 | -0.800321 | 1.522679e-48 | -8.615850e-47 |
| Msa0173260 | Msa1366700 | -0.806447 | 8.191766e-50 | -8.615850e-47 |
| Msa0173260 | Msa1379250 | 0.805920 | 1.057318e-49 | -8.615850e-47 |
| Msa0173260 | Msa1384980 | -0.814987 | 1.164343e-51 | -8.615850e-47 |
| Msa0173260 | Msa1400940 | 0.855105 | 7.888306e-62 | -8.615850e-47 |
| Msa0173260 | Msa1402000 | 0.944348 | 2.298185e-103 | -8.615850e-47 |
| Msa0173260 | Msa1407210 | 0.802395 | 5.725751e-49 | -8.615850e-47 |
| Msa0173260 | Msa1409060 | 0.815517 | 8.876592e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173260 | MtrunA17_Chr1g0192651 | 99.394 | 165 | 1 | 0 | 1 | 165 | 1 | 165 | 7.76e-122 | 340 |
| Msa0173260 | MtrunA17_Chr1g0194801 | 53.247 | 154 | 66 | 3 | 9 | 157 | 6 | 158 | 2.44e-56 | 174 |
| Msa0173260 | MtrunA17_Chr1g0176311 | 40.741 | 162 | 83 | 3 | 10 | 158 | 23 | 184 | 2.11e-34 | 119 |
| Msa0173260 | MtrunA17_Chr1g0176321 | 38.690 | 168 | 84 | 4 | 10 | 158 | 4 | 171 | 8.96e-33 | 114 |
| Msa0173260 | MtrunA17_Chr1g0195661 | 40.132 | 152 | 88 | 2 | 11 | 159 | 14 | 165 | 2.55e-32 | 113 |
| Msa0173260 | MtrunA17_Chr5g0427291 | 37.037 | 162 | 84 | 5 | 11 | 155 | 10 | 170 | 2.88e-30 | 108 |
| Msa0173260 | MtrunA17_Chr7g0269301 | 40.123 | 162 | 90 | 4 | 1 | 158 | 1 | 159 | 3.66e-27 | 100 |
| Msa0173260 | MtrunA17_Chr2g0323291 | 30.539 | 167 | 102 | 4 | 9 | 163 | 25 | 189 | 1.02e-21 | 87.4 |
| Msa0173260 | MtrunA17_Chr5g0433951 | 33.962 | 159 | 89 | 5 | 13 | 160 | 9 | 162 | 6.78e-19 | 79.0 |
| Msa0173260 | MtrunA17_Chr4g0001641 | 52.381 | 63 | 30 | 0 | 93 | 155 | 3 | 65 | 1.43e-18 | 75.5 |
| Msa0173260 | MtrunA17_Chr2g0294421 | 31.250 | 160 | 94 | 4 | 7 | 155 | 3 | 157 | 1.88e-17 | 75.1 |
| Msa0173260 | MtrunA17_Chr6g0450171 | 27.485 | 171 | 110 | 5 | 6 | 164 | 3 | 171 | 4.40e-17 | 74.3 |
| Msa0173260 | MtrunA17_Chr4g0008801 | 34.194 | 155 | 92 | 4 | 9 | 155 | 5 | 157 | 2.11e-16 | 72.4 |
| Msa0173260 | MtrunA17_Chr4g0032261 | 31.902 | 163 | 101 | 4 | 7 | 161 | 3 | 163 | 5.29e-14 | 65.9 |
| Msa0173260 | MtrunA17_Chr7g0240701 | 31.613 | 155 | 96 | 4 | 9 | 155 | 5 | 157 | 1.40e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173260 | AT3G62550.1 | 50.993 | 151 | 71 | 1 | 9 | 156 | 7 | 157 | 4.30e-52 | 164 |
| Msa0173260 | AT3G11930.2 | 38.922 | 167 | 88 | 4 | 9 | 161 | 33 | 199 | 2.37e-34 | 119 |
| Msa0173260 | AT3G11930.1 | 39.157 | 166 | 88 | 4 | 9 | 161 | 33 | 198 | 2.89e-34 | 119 |
| Msa0173260 | AT3G11930.4 | 38.690 | 168 | 88 | 5 | 9 | 161 | 33 | 200 | 1.09e-33 | 118 |
| Msa0173260 | AT3G58450.1 | 37.725 | 167 | 92 | 4 | 11 | 165 | 32 | 198 | 5.32e-32 | 114 |
| Msa0173260 | AT3G58450.2 | 39.375 | 160 | 84 | 3 | 11 | 161 | 32 | 187 | 2.49e-31 | 112 |
| Msa0173260 | AT1G09740.2 | 37.654 | 162 | 91 | 3 | 11 | 162 | 10 | 171 | 7.87e-31 | 110 |
| Msa0173260 | AT1G09740.1 | 37.654 | 162 | 91 | 3 | 11 | 162 | 10 | 171 | 7.87e-31 | 110 |
| Msa0173260 | AT2G47710.1 | 36.875 | 160 | 92 | 4 | 5 | 158 | 3 | 159 | 1.10e-29 | 106 |
| Msa0173260 | AT3G11930.3 | 33.679 | 193 | 88 | 5 | 9 | 161 | 33 | 225 | 3.54e-28 | 104 |
| Msa0173260 | AT1G68300.1 | 36.601 | 153 | 86 | 4 | 9 | 155 | 10 | 157 | 4.60e-27 | 100 |
| Msa0173260 | AT3G17020.1 | 36.025 | 161 | 84 | 6 | 8 | 155 | 6 | 160 | 3.04e-20 | 82.4 |
| Msa0173260 | AT1G11360.2 | 29.586 | 169 | 104 | 5 | 9 | 165 | 38 | 203 | 2.38e-18 | 79.3 |
| Msa0173260 | AT1G11360.1 | 29.586 | 169 | 104 | 5 | 9 | 165 | 38 | 203 | 2.38e-18 | 79.3 |
| Msa0173260 | AT1G11360.4 | 29.586 | 169 | 104 | 5 | 9 | 165 | 38 | 203 | 2.38e-18 | 79.3 |
| Msa0173260 | AT1G11360.3 | 29.586 | 169 | 104 | 5 | 9 | 165 | 38 | 203 | 2.38e-18 | 79.3 |
| Msa0173260 | AT3G01520.1 | 31.944 | 144 | 93 | 4 | 24 | 164 | 30 | 171 | 1.86e-17 | 75.5 |
| Msa0173260 | AT5G14680.1 | 29.940 | 167 | 103 | 5 | 10 | 164 | 7 | 171 | 9.47e-17 | 73.9 |
| Msa0173260 | AT3G03270.2 | 30.818 | 159 | 94 | 5 | 8 | 155 | 4 | 157 | 2.20e-15 | 69.7 |
| Msa0173260 | AT3G53990.1 | 28.302 | 159 | 96 | 4 | 9 | 155 | 5 | 157 | 3.54e-12 | 61.2 |
| Msa0173260 | AT3G25930.1 | 29.012 | 162 | 87 | 8 | 9 | 156 | 2 | 149 | 2.16e-11 | 59.3 |
Find 57 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTCCAGTGGTTGATTT+TGG | 0.145041 | 1_4:+58416704 | None:intergenic |
| CACATGGGGCCTCAAGAATT+TGG | 0.155781 | 1_4:-58417415 | Msa0173260:CDS |
| TTTCAAATATTAAATGATAA+AGG | 0.289136 | 1_4:-58416541 | Msa0173260:three_prime_UTR |
| GTTGTTTATTCTGCCTTTGA+TGG | 0.302678 | 1_4:-58417339 | Msa0173260:CDS |
| TTTCACACTGCTTGATAATT+CGG | 0.344578 | 1_4:+58417511 | None:intergenic |
| GGCTTCTTCACAATCAAAAC+AGG | 0.346785 | 1_4:+58416725 | None:intergenic |
| ACAAGTTGCTGATTGTGTTT+TGG | 0.353665 | 1_4:-58417170 | Msa0173260:CDS |
| GGGTGTTGATATCTTGGTTA+TGG | 0.361677 | 1_4:-58416944 | Msa0173260:CDS |
| GAGGAGGATAAGGTGATCTT+TGG | 0.363644 | 1_4:+58417380 | None:intergenic |
| TTGCTATGAACATGTCCTTT+GGG | 0.364433 | 1_4:-58416600 | Msa0173260:three_prime_UTR |
| ATTGCTATGAACATGTCCTT+TGG | 0.383983 | 1_4:-58416601 | Msa0173260:three_prime_UTR |
| GCGTGTCTTGTTCCTTCATA+AGG | 0.398759 | 1_4:-58416573 | Msa0173260:three_prime_UTR |
| AAAAGATATATTCCTTATGA+AGG | 0.407539 | 1_4:+58416561 | None:intergenic |
| GACATCATTACAGACTATCT+TGG | 0.412460 | 1_4:+58417141 | None:intergenic |
| GGTGTTGATATCTTGGTTAT+GGG | 0.433422 | 1_4:-58416943 | Msa0173260:CDS |
| AAACACAATCAGCAACTTGT+TGG | 0.448947 | 1_4:+58417173 | None:intergenic |
| CCGTTATGTCAGAAGAGAAT+AGG | 0.454640 | 1_4:+58417215 | None:intergenic |
| CCCTAGGGATGTAATCTGTC+AGG | 0.458933 | 1_4:-58416980 | Msa0173260:CDS |
| TATTCTGCCTTTGATGGCAC+AGG | 0.479279 | 1_4:-58417333 | Msa0173260:intron |
| TTGAATGGCAGGGCTTTCCT+TGG | 0.488782 | 1_4:-58416785 | Msa0173260:intron |
| ATCTTAATTGTCTCCTCCAG+TGG | 0.492223 | 1_4:+58416694 | None:intergenic |
| TTGTTGGCTATACTTCTCCA+TGG | 0.495342 | 1_4:+58417189 | None:intergenic |
| GCTTAACATAGAGGAGGATA+AGG | 0.496830 | 1_4:+58417370 | None:intergenic |
| ATGGCTGGTATAACAGAAAA+CGG | 0.497259 | 1_4:-58417489 | Msa0173260:CDS |
| AATTATCAAGCAGTGTGAAA+TGG | 0.497338 | 1_4:-58417508 | Msa0173260:exon |
| GTGGAGACGAGGATAGAGAA+TGG | 0.517274 | 1_4:-58417006 | Msa0173260:CDS |
| GTTATGGGAAGCCACGGCTA+TGG | 0.518096 | 1_4:-58416928 | Msa0173260:CDS |
| GGATAGAGAATGGTGACCCT+AGG | 0.527492 | 1_4:-58416996 | Msa0173260:CDS |
| CCTATTCTCTTCTGACATAA+CGG | 0.542181 | 1_4:-58417215 | Msa0173260:CDS |
| ATCAAGCAGTGTGAAATGGC+TGG | 0.546216 | 1_4:-58417504 | Msa0173260:exon |
| TCAATTACCTGTGCCATCAA+AGG | 0.550245 | 1_4:+58417326 | None:intergenic |
| ATCTTGGTTATGGGAAGCCA+CGG | 0.562584 | 1_4:-58416934 | Msa0173260:CDS |
| AGAAAACGGAAGAAGAATCA+TGG | 0.569970 | 1_4:-58417475 | Msa0173260:CDS |
| CACGAGGAGGCTTAACATAG+AGG | 0.577003 | 1_4:+58417361 | None:intergenic |
| AGTGGTTGCTCACACTTCCA+AGG | 0.579050 | 1_4:+58416768 | None:intergenic |
| GATAGAGAATGGTGACCCTA+GGG | 0.580628 | 1_4:-58416995 | Msa0173260:CDS |
| ATTGTGCTTCAAATTATGAT+CGG | 0.581201 | 1_4:+58417616 | None:intergenic |
| AAGAAGCCAAAATCAACCAC+TGG | 0.584975 | 1_4:-58416710 | Msa0173260:CDS |
| GCCTGACAGATTACATCCCT+AGG | 0.585000 | 1_4:+58416979 | None:intergenic |
| ATCATGGTAGCTATTGATGA+AGG | 0.586206 | 1_4:-58417459 | Msa0173260:CDS |
| TTCTGACATAACGGCAACCA+TGG | 0.586507 | 1_4:-58417206 | Msa0173260:CDS |
| AGAGCATTTATGCTCTCACA+TGG | 0.601758 | 1_4:-58417431 | Msa0173260:CDS |
| ACAAGACACGCACAACCCAA+AGG | 0.602143 | 1_4:+58416585 | None:intergenic |
| AGCATTTATGCTCTCACATG+GGG | 0.615425 | 1_4:-58417429 | Msa0173260:CDS |
| GAGCATTTATGCTCTCACAT+GGG | 0.616831 | 1_4:-58417430 | Msa0173260:CDS |
| TCGGTTTGAGATAGATCACA+AGG | 0.631463 | 1_4:+58417530 | None:intergenic |
| ACGGCTATGGTGTCATCAAG+AGG | 0.638531 | 1_4:-58416915 | Msa0173260:intron |
| AAGCCAAAATCAACCACTGG+AGG | 0.644827 | 1_4:-58416707 | Msa0173260:CDS |
| TGTTCATAGCAATAGCAACA+AGG | 0.651321 | 1_4:+58416611 | None:intergenic |
| GCTTCTTCACAATCAAAACA+GGG | 0.652447 | 1_4:+58416726 | None:intergenic |
| ATATGGTTTAGGTGGAGACG+AGG | 0.658827 | 1_4:-58417017 | Msa0173260:intron |
| CCTGACAGATTACATCCCTA+GGG | 0.659449 | 1_4:+58416980 | None:intergenic |
| TCTTGATGACACCATAGCCG+TGG | 0.679887 | 1_4:+58416917 | None:intergenic |
| ACTTCACATTCTGTGCACAG+TGG | 0.689187 | 1_4:+58416750 | None:intergenic |
| GCAGAATAAACAACACGAGG+AGG | 0.692643 | 1_4:+58417348 | None:intergenic |
| GAGGAGGCTTAACATAGAGG+AGG | 0.704073 | 1_4:+58417364 | None:intergenic |
| AAGGCAGAATAAACAACACG+AGG | 0.733599 | 1_4:+58417345 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAAATATTAAATGATAA+AGG | - | chr1_4:58417631-58417650 | Msa0173260:five_prime_UTR | 10.0% |
| !! | TTTCAAATATTAAATGATAA+AGG | - | chr1_4:58417631-58417650 | Msa0173260:five_prime_UTR | 10.0% |
| !! | ATTAACTATAGATAAAAATG+AGG | + | chr1_4:58417115-58417134 | None:intergenic | 15.0% |
| !! | TTAATAATTAATCTGTGATA+TGG | - | chr1_4:58417138-58417157 | Msa0173260:CDS | 15.0% |
| !! | TGTGAATTGTAAATTTAATT+TGG | - | chr1_4:58417349-58417368 | Msa0173260:CDS | 15.0% |
| !! | GAAAAGAAAAAAACAAAATA+AGG | + | chr1_4:58417519-58417538 | None:intergenic | 15.0% |
| !! | ATTAACTATAGATAAAAATG+AGG | + | chr1_4:58417115-58417134 | None:intergenic | 15.0% |
| !! | TTAATAATTAATCTGTGATA+TGG | - | chr1_4:58417138-58417157 | Msa0173260:CDS | 15.0% |
| !! | TGTGAATTGTAAATTTAATT+TGG | - | chr1_4:58417349-58417368 | Msa0173260:CDS | 15.0% |
| !! | GAAAAGAAAAAAACAAAATA+AGG | + | chr1_4:58417519-58417538 | None:intergenic | 15.0% |
| !! | TTGTATCATATATATGTTTC+AGG | - | chr1_4:58416931-58416950 | Msa0173260:CDS | 20.0% |
| !!! | ATCAATGTATACTTACATTT+TGG | + | chr1_4:58417056-58417075 | None:intergenic | 20.0% |
| !!! | TTGTAAATTTAATTTGGTTC+TGG | - | chr1_4:58417355-58417374 | Msa0173260:CDS | 20.0% |
| !! | AAAAGATATATTCCTTATGA+AGG | + | chr1_4:58417614-58417633 | None:intergenic | 20.0% |
| !! | TTGTATCATATATATGTTTC+AGG | - | chr1_4:58416931-58416950 | Msa0173260:CDS | 20.0% |
| !!! | ATCAATGTATACTTACATTT+TGG | + | chr1_4:58417056-58417075 | None:intergenic | 20.0% |
| !!! | TTGTAAATTTAATTTGGTTC+TGG | - | chr1_4:58417355-58417374 | Msa0173260:CDS | 20.0% |
| !! | AAAAGATATATTCCTTATGA+AGG | + | chr1_4:58417614-58417633 | None:intergenic | 20.0% |
| ! | ATTGTGCTTCAAATTATGAT+CGG | + | chr1_4:58416559-58416578 | None:intergenic | 25.0% |
| ! | TTTGAAAAACCAAATTCTTG+AGG | + | chr1_4:58416769-58416788 | None:intergenic | 25.0% |
| ! | GGTAATTGAACAAAATTTCA+TGG | - | chr1_4:58416860-58416879 | Msa0173260:intron | 25.0% |
| ! | ACTATAGATAAAAATGAGGA+GGG | + | chr1_4:58417111-58417130 | None:intergenic | 25.0% |
| ! | AACTATAGATAAAAATGAGG+AGG | + | chr1_4:58417112-58417131 | None:intergenic | 25.0% |
| ! | ATTAATCTGTGATATGGTTT+AGG | - | chr1_4:58417144-58417163 | Msa0173260:CDS | 25.0% |
| !! | ATTTTTGTTAGAATGAGCTA+AGG | - | chr1_4:58417325-58417344 | Msa0173260:intron | 25.0% |
| ! | ATTGTGCTTCAAATTATGAT+CGG | + | chr1_4:58416559-58416578 | None:intergenic | 25.0% |
| ! | TTTGAAAAACCAAATTCTTG+AGG | + | chr1_4:58416769-58416788 | None:intergenic | 25.0% |
| ! | GGTAATTGAACAAAATTTCA+TGG | - | chr1_4:58416860-58416879 | Msa0173260:intron | 25.0% |
| ! | ACTATAGATAAAAATGAGGA+GGG | + | chr1_4:58417111-58417130 | None:intergenic | 25.0% |
| ! | AACTATAGATAAAAATGAGG+AGG | + | chr1_4:58417112-58417131 | None:intergenic | 25.0% |
| ! | ATTAATCTGTGATATGGTTT+AGG | - | chr1_4:58417144-58417163 | Msa0173260:CDS | 25.0% |
| !! | ATTTTTGTTAGAATGAGCTA+AGG | - | chr1_4:58417325-58417344 | Msa0173260:intron | 25.0% |
| ! | TTTCACACTGCTTGATAATT+CGG | + | chr1_4:58416664-58416683 | None:intergenic | 30.0% |
| AATTATCAAGCAGTGTGAAA+TGG | - | chr1_4:58416664-58416683 | Msa0173260:three_prime_UTR | 30.0% | |
| !! | AAAAATGGGTGTTGATATCT+TGG | - | chr1_4:58417222-58417241 | Msa0173260:CDS | 30.0% |
| ! | TTTCACACTGCTTGATAATT+CGG | + | chr1_4:58416664-58416683 | None:intergenic | 30.0% |
| AATTATCAAGCAGTGTGAAA+TGG | - | chr1_4:58416664-58416683 | Msa0173260:three_prime_UTR | 30.0% | |
| !! | AAAAATGGGTGTTGATATCT+TGG | - | chr1_4:58417222-58417241 | Msa0173260:CDS | 30.0% |
| ATGGCTGGTATAACAGAAAA+CGG | - | chr1_4:58416683-58416702 | Msa0173260:exon | 35.0% | |
| AGAAAACGGAAGAAGAATCA+TGG | - | chr1_4:58416697-58416716 | Msa0173260:CDS | 35.0% | |
| ATCATGGTAGCTATTGATGA+AGG | - | chr1_4:58416713-58416732 | Msa0173260:CDS | 35.0% | |
| GTTGTTTATTCTGCCTTTGA+TGG | - | chr1_4:58416833-58416852 | Msa0173260:intron | 35.0% | |
| CCTATTCTCTTCTGACATAA+CGG | - | chr1_4:58416957-58416976 | Msa0173260:CDS | 35.0% | |
| AAACACAATCAGCAACTTGT+TGG | + | chr1_4:58417002-58417021 | None:intergenic | 35.0% | |
| !! | ACAAGTTGCTGATTGTGTTT+TGG | - | chr1_4:58417002-58417021 | Msa0173260:CDS | 35.0% |
| GACATCATTACAGACTATCT+TGG | + | chr1_4:58417034-58417053 | None:intergenic | 35.0% | |
| AATCTGTGATATGGTTTAGG+TGG | - | chr1_4:58417147-58417166 | Msa0173260:CDS | 35.0% | |
| TGTCAGGCTGTTCAAAAAAT+GGG | - | chr1_4:58417208-58417227 | Msa0173260:CDS | 35.0% | |
| !! | GGTGTTGATATCTTGGTTAT+GGG | - | chr1_4:58417229-58417248 | Msa0173260:intron | 35.0% |
| ! | TTCTGGCTGTTATTGTTGAA+TGG | - | chr1_4:58417372-58417391 | Msa0173260:CDS | 35.0% |
| GCTTCTTCACAATCAAAACA+GGG | + | chr1_4:58417449-58417468 | None:intergenic | 35.0% | |
| TGTTCATAGCAATAGCAACA+AGG | + | chr1_4:58417564-58417583 | None:intergenic | 35.0% | |
| ATTGCTATGAACATGTCCTT+TGG | - | chr1_4:58417571-58417590 | Msa0173260:five_prime_UTR | 35.0% | |
| TTGCTATGAACATGTCCTTT+GGG | - | chr1_4:58417572-58417591 | Msa0173260:five_prime_UTR | 35.0% | |
| ATGGCTGGTATAACAGAAAA+CGG | - | chr1_4:58416683-58416702 | Msa0173260:exon | 35.0% | |
| AGAAAACGGAAGAAGAATCA+TGG | - | chr1_4:58416697-58416716 | Msa0173260:CDS | 35.0% | |
| ATCATGGTAGCTATTGATGA+AGG | - | chr1_4:58416713-58416732 | Msa0173260:CDS | 35.0% | |
| GTTGTTTATTCTGCCTTTGA+TGG | - | chr1_4:58416833-58416852 | Msa0173260:intron | 35.0% | |
| CCTATTCTCTTCTGACATAA+CGG | - | chr1_4:58416957-58416976 | Msa0173260:CDS | 35.0% | |
| AAACACAATCAGCAACTTGT+TGG | + | chr1_4:58417002-58417021 | None:intergenic | 35.0% | |
| !! | ACAAGTTGCTGATTGTGTTT+TGG | - | chr1_4:58417002-58417021 | Msa0173260:CDS | 35.0% |
| GACATCATTACAGACTATCT+TGG | + | chr1_4:58417034-58417053 | None:intergenic | 35.0% | |
| AATCTGTGATATGGTTTAGG+TGG | - | chr1_4:58417147-58417166 | Msa0173260:CDS | 35.0% | |
| TGTCAGGCTGTTCAAAAAAT+GGG | - | chr1_4:58417208-58417227 | Msa0173260:CDS | 35.0% | |
| !! | GGTGTTGATATCTTGGTTAT+GGG | - | chr1_4:58417229-58417248 | Msa0173260:intron | 35.0% |
| ! | TTCTGGCTGTTATTGTTGAA+TGG | - | chr1_4:58417372-58417391 | Msa0173260:CDS | 35.0% |
| GCTTCTTCACAATCAAAACA+GGG | + | chr1_4:58417449-58417468 | None:intergenic | 35.0% | |
| TGTTCATAGCAATAGCAACA+AGG | + | chr1_4:58417564-58417583 | None:intergenic | 35.0% | |
| ATTGCTATGAACATGTCCTT+TGG | - | chr1_4:58417571-58417590 | Msa0173260:five_prime_UTR | 35.0% | |
| TTGCTATGAACATGTCCTTT+GGG | - | chr1_4:58417572-58417591 | Msa0173260:five_prime_UTR | 35.0% | |
| ! | TCGGTTTGAGATAGATCACA+AGG | + | chr1_4:58416645-58416664 | None:intergenic | 40.0% |
| ! | AGAGCATTTATGCTCTCACA+TGG | - | chr1_4:58416741-58416760 | Msa0173260:CDS | 40.0% |
| GAGCATTTATGCTCTCACAT+GGG | - | chr1_4:58416742-58416761 | Msa0173260:CDS | 40.0% | |
| AGCATTTATGCTCTCACATG+GGG | - | chr1_4:58416743-58416762 | Msa0173260:CDS | 40.0% | |
| GCTTAACATAGAGGAGGATA+AGG | + | chr1_4:58416805-58416824 | None:intergenic | 40.0% | |
| AAGGCAGAATAAACAACACG+AGG | + | chr1_4:58416830-58416849 | None:intergenic | 40.0% | |
| TCAATTACCTGTGCCATCAA+AGG | + | chr1_4:58416849-58416868 | None:intergenic | 40.0% | |
| CCGTTATGTCAGAAGAGAAT+AGG | + | chr1_4:58416960-58416979 | None:intergenic | 40.0% | |
| ! | TTGTTGGCTATACTTCTCCA+TGG | + | chr1_4:58416986-58417005 | None:intergenic | 40.0% |
| CTGTCAGGCTGTTCAAAAAA+TGG | - | chr1_4:58417207-58417226 | Msa0173260:CDS | 40.0% | |
| !! | GGGTGTTGATATCTTGGTTA+TGG | - | chr1_4:58417228-58417247 | Msa0173260:intron | 40.0% |
| GCTGTTATTGTTGAATGGCA+GGG | - | chr1_4:58417377-58417396 | Msa0173260:CDS | 40.0% | |
| GGCTTCTTCACAATCAAAAC+AGG | + | chr1_4:58417450-58417469 | None:intergenic | 40.0% | |
| AAGAAGCCAAAATCAACCAC+TGG | - | chr1_4:58417462-58417481 | Msa0173260:CDS | 40.0% | |
| ATCTTAATTGTCTCCTCCAG+TGG | + | chr1_4:58417481-58417500 | None:intergenic | 40.0% | |
| ! | TCGGTTTGAGATAGATCACA+AGG | + | chr1_4:58416645-58416664 | None:intergenic | 40.0% |
| ! | AGAGCATTTATGCTCTCACA+TGG | - | chr1_4:58416741-58416760 | Msa0173260:CDS | 40.0% |
| GAGCATTTATGCTCTCACAT+GGG | - | chr1_4:58416742-58416761 | Msa0173260:CDS | 40.0% | |
| AGCATTTATGCTCTCACATG+GGG | - | chr1_4:58416743-58416762 | Msa0173260:CDS | 40.0% | |
| GCTTAACATAGAGGAGGATA+AGG | + | chr1_4:58416805-58416824 | None:intergenic | 40.0% | |
| AAGGCAGAATAAACAACACG+AGG | + | chr1_4:58416830-58416849 | None:intergenic | 40.0% | |
| TCAATTACCTGTGCCATCAA+AGG | + | chr1_4:58416849-58416868 | None:intergenic | 40.0% | |
| CCGTTATGTCAGAAGAGAAT+AGG | + | chr1_4:58416960-58416979 | None:intergenic | 40.0% | |
| ! | TTGTTGGCTATACTTCTCCA+TGG | + | chr1_4:58416986-58417005 | None:intergenic | 40.0% |
| CTGTCAGGCTGTTCAAAAAA+TGG | - | chr1_4:58417207-58417226 | Msa0173260:CDS | 40.0% | |
| !! | GGGTGTTGATATCTTGGTTA+TGG | - | chr1_4:58417228-58417247 | Msa0173260:intron | 40.0% |
| GCTGTTATTGTTGAATGGCA+GGG | - | chr1_4:58417377-58417396 | Msa0173260:CDS | 40.0% | |
| GGCTTCTTCACAATCAAAAC+AGG | + | chr1_4:58417450-58417469 | None:intergenic | 40.0% | |
| AAGAAGCCAAAATCAACCAC+TGG | - | chr1_4:58417462-58417481 | Msa0173260:CDS | 40.0% | |
| ATCTTAATTGTCTCCTCCAG+TGG | + | chr1_4:58417481-58417500 | None:intergenic | 40.0% | |
| ATCAAGCAGTGTGAAATGGC+TGG | - | chr1_4:58416668-58416687 | Msa0173260:three_prime_UTR | 45.0% | |
| GAGGAGGATAAGGTGATCTT+TGG | + | chr1_4:58416795-58416814 | None:intergenic | 45.0% | |
| GCAGAATAAACAACACGAGG+AGG | + | chr1_4:58416827-58416846 | None:intergenic | 45.0% | |
| ! | TATTCTGCCTTTGATGGCAC+AGG | - | chr1_4:58416839-58416858 | Msa0173260:intron | 45.0% |
| TTCTGACATAACGGCAACCA+TGG | - | chr1_4:58416966-58416985 | Msa0173260:CDS | 45.0% | |
| ATATGGTTTAGGTGGAGACG+AGG | - | chr1_4:58417155-58417174 | Msa0173260:CDS | 45.0% | |
| GATAGAGAATGGTGACCCTA+GGG | - | chr1_4:58417177-58417196 | Msa0173260:CDS | 45.0% | |
| CCTGACAGATTACATCCCTA+GGG | + | chr1_4:58417195-58417214 | None:intergenic | 45.0% | |
| ATCTTGGTTATGGGAAGCCA+CGG | - | chr1_4:58417238-58417257 | Msa0173260:intron | 45.0% | |
| GGCTGTTATTGTTGAATGGC+AGG | - | chr1_4:58417376-58417395 | Msa0173260:CDS | 45.0% | |
| ACTTCACATTCTGTGCACAG+TGG | + | chr1_4:58417425-58417444 | None:intergenic | 45.0% | |
| AAGCCAAAATCAACCACTGG+AGG | - | chr1_4:58417465-58417484 | Msa0173260:CDS | 45.0% | |
| !! | TCTCCTCCAGTGGTTGATTT+TGG | + | chr1_4:58417471-58417490 | None:intergenic | 45.0% |
| ! | GCGTGTCTTGTTCCTTCATA+AGG | - | chr1_4:58417599-58417618 | Msa0173260:five_prime_UTR | 45.0% |
| ATCAAGCAGTGTGAAATGGC+TGG | - | chr1_4:58416668-58416687 | Msa0173260:three_prime_UTR | 45.0% | |
| GAGGAGGATAAGGTGATCTT+TGG | + | chr1_4:58416795-58416814 | None:intergenic | 45.0% | |
| GCAGAATAAACAACACGAGG+AGG | + | chr1_4:58416827-58416846 | None:intergenic | 45.0% | |
| ! | TATTCTGCCTTTGATGGCAC+AGG | - | chr1_4:58416839-58416858 | Msa0173260:intron | 45.0% |
| TTCTGACATAACGGCAACCA+TGG | - | chr1_4:58416966-58416985 | Msa0173260:CDS | 45.0% | |
| ATATGGTTTAGGTGGAGACG+AGG | - | chr1_4:58417155-58417174 | Msa0173260:CDS | 45.0% | |
| GATAGAGAATGGTGACCCTA+GGG | - | chr1_4:58417177-58417196 | Msa0173260:CDS | 45.0% | |
| CCTGACAGATTACATCCCTA+GGG | + | chr1_4:58417195-58417214 | None:intergenic | 45.0% | |
| ATCTTGGTTATGGGAAGCCA+CGG | - | chr1_4:58417238-58417257 | Msa0173260:intron | 45.0% | |
| GGCTGTTATTGTTGAATGGC+AGG | - | chr1_4:58417376-58417395 | Msa0173260:CDS | 45.0% | |
| ACTTCACATTCTGTGCACAG+TGG | + | chr1_4:58417425-58417444 | None:intergenic | 45.0% | |
| AAGCCAAAATCAACCACTGG+AGG | - | chr1_4:58417465-58417484 | Msa0173260:CDS | 45.0% | |
| !! | TCTCCTCCAGTGGTTGATTT+TGG | + | chr1_4:58417471-58417490 | None:intergenic | 45.0% |
| ! | GCGTGTCTTGTTCCTTCATA+AGG | - | chr1_4:58417599-58417618 | Msa0173260:five_prime_UTR | 45.0% |
| CACATGGGGCCTCAAGAATT+TGG | - | chr1_4:58416757-58416776 | Msa0173260:CDS | 50.0% | |
| GAGGAGGCTTAACATAGAGG+AGG | + | chr1_4:58416811-58416830 | None:intergenic | 50.0% | |
| CACGAGGAGGCTTAACATAG+AGG | + | chr1_4:58416814-58416833 | None:intergenic | 50.0% | |
| GTGGAGACGAGGATAGAGAA+TGG | - | chr1_4:58417166-58417185 | Msa0173260:CDS | 50.0% | |
| GGATAGAGAATGGTGACCCT+AGG | - | chr1_4:58417176-58417195 | Msa0173260:CDS | 50.0% | |
| CCCTAGGGATGTAATCTGTC+AGG | - | chr1_4:58417192-58417211 | Msa0173260:CDS | 50.0% | |
| GCCTGACAGATTACATCCCT+AGG | + | chr1_4:58417196-58417215 | None:intergenic | 50.0% | |
| ! | TCTTGATGACACCATAGCCG+TGG | + | chr1_4:58417258-58417277 | None:intergenic | 50.0% |
| !! | ACGGCTATGGTGTCATCAAG+AGG | - | chr1_4:58417257-58417276 | Msa0173260:intron | 50.0% |
| TTGAATGGCAGGGCTTTCCT+TGG | - | chr1_4:58417387-58417406 | Msa0173260:CDS | 50.0% | |
| AGTGGTTGCTCACACTTCCA+AGG | + | chr1_4:58417407-58417426 | None:intergenic | 50.0% | |
| ACAAGACACGCACAACCCAA+AGG | + | chr1_4:58417590-58417609 | None:intergenic | 50.0% | |
| CACATGGGGCCTCAAGAATT+TGG | - | chr1_4:58416757-58416776 | Msa0173260:CDS | 50.0% | |
| GAGGAGGCTTAACATAGAGG+AGG | + | chr1_4:58416811-58416830 | None:intergenic | 50.0% | |
| CACGAGGAGGCTTAACATAG+AGG | + | chr1_4:58416814-58416833 | None:intergenic | 50.0% | |
| GTGGAGACGAGGATAGAGAA+TGG | - | chr1_4:58417166-58417185 | Msa0173260:CDS | 50.0% | |
| GGATAGAGAATGGTGACCCT+AGG | - | chr1_4:58417176-58417195 | Msa0173260:CDS | 50.0% | |
| CCCTAGGGATGTAATCTGTC+AGG | - | chr1_4:58417192-58417211 | Msa0173260:CDS | 50.0% | |
| GCCTGACAGATTACATCCCT+AGG | + | chr1_4:58417196-58417215 | None:intergenic | 50.0% | |
| ! | TCTTGATGACACCATAGCCG+TGG | + | chr1_4:58417258-58417277 | None:intergenic | 50.0% |
| !! | ACGGCTATGGTGTCATCAAG+AGG | - | chr1_4:58417257-58417276 | Msa0173260:intron | 50.0% |
| TTGAATGGCAGGGCTTTCCT+TGG | - | chr1_4:58417387-58417406 | Msa0173260:CDS | 50.0% | |
| AGTGGTTGCTCACACTTCCA+AGG | + | chr1_4:58417407-58417426 | None:intergenic | 50.0% | |
| ACAAGACACGCACAACCCAA+AGG | + | chr1_4:58417590-58417609 | None:intergenic | 50.0% | |
| GTTATGGGAAGCCACGGCTA+TGG | - | chr1_4:58417244-58417263 | Msa0173260:intron | 55.0% | |
| GTTATGGGAAGCCACGGCTA+TGG | - | chr1_4:58417244-58417263 | Msa0173260:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58416536 | 58417658 | 58416536 | ID=Msa0173260;Name=Msa0173260 |
| chr1_4 | mRNA | 58416536 | 58417658 | 58416536 | ID=Msa0173260-mRNA-1;Parent=Msa0173260;Name=Msa0173260-mRNA-1;_AED=0.08;_eAED=0.08;_QI=147|1|1|1|1|1|4|161|165 |
| chr1_4 | exon | 58416536 | 58416796 | 58416536 | ID=Msa0173260-mRNA-1:exon:18155;Parent=Msa0173260-mRNA-1 |
| chr1_4 | exon | 58416916 | 58417028 | 58416916 | ID=Msa0173260-mRNA-1:exon:18154;Parent=Msa0173260-mRNA-1 |
| chr1_4 | exon | 58417135 | 58417241 | 58417135 | ID=Msa0173260-mRNA-1:exon:18153;Parent=Msa0173260-mRNA-1 |
| chr1_4 | exon | 58417334 | 58417658 | 58417334 | ID=Msa0173260-mRNA-1:exon:18152;Parent=Msa0173260-mRNA-1 |
| chr1_4 | five_prime_UTR | 58417512 | 58417658 | 58417512 | ID=Msa0173260-mRNA-1:five_prime_utr;Parent=Msa0173260-mRNA-1 |
| chr1_4 | CDS | 58417334 | 58417511 | 58417334 | ID=Msa0173260-mRNA-1:cds;Parent=Msa0173260-mRNA-1 |
| chr1_4 | CDS | 58417135 | 58417241 | 58417135 | ID=Msa0173260-mRNA-1:cds;Parent=Msa0173260-mRNA-1 |
| chr1_4 | CDS | 58416916 | 58417028 | 58416916 | ID=Msa0173260-mRNA-1:cds;Parent=Msa0173260-mRNA-1 |
| chr1_4 | CDS | 58416697 | 58416796 | 58416697 | ID=Msa0173260-mRNA-1:cds;Parent=Msa0173260-mRNA-1 |
| chr1_4 | three_prime_UTR | 58416536 | 58416696 | 58416536 | ID=Msa0173260-mRNA-1:three_prime_utr;Parent=Msa0173260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
