AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1402000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1402000 MtrunA17_Chr1g0192651 100.000 165 0 0 1 165 1 165 2.14e-123 343
Msa1402000 MtrunA17_Chr1g0194801 53.247 154 66 3 9 157 6 158 3.20e-56 174
Msa1402000 MtrunA17_Chr1g0176311 40.741 162 83 3 10 158 23 184 1.98e-34 119
Msa1402000 MtrunA17_Chr1g0176321 38.690 168 84 4 10 158 4 171 8.67e-33 114
Msa1402000 MtrunA17_Chr1g0195661 40.132 152 88 2 11 159 14 165 2.24e-32 113
Msa1402000 MtrunA17_Chr5g0427291 37.037 162 84 5 11 155 10 170 3.03e-30 108
Msa1402000 MtrunA17_Chr7g0269301 40.123 162 90 4 1 158 1 159 3.91e-27 100
Msa1402000 MtrunA17_Chr2g0323291 30.539 167 102 4 9 163 25 189 1.09e-21 87.4
Msa1402000 MtrunA17_Chr5g0433951 33.962 159 89 5 13 160 9 162 6.64e-19 79.0
Msa1402000 MtrunA17_Chr4g0001641 52.381 63 30 0 93 155 3 65 1.65e-18 75.1
Msa1402000 MtrunA17_Chr2g0294421 31.250 160 94 4 7 155 3 157 1.22e-17 75.5
Msa1402000 MtrunA17_Chr6g0450171 27.485 171 110 5 6 164 3 171 3.27e-17 74.7
Msa1402000 MtrunA17_Chr4g0008801 34.194 155 92 4 9 155 5 157 1.69e-16 72.4
Msa1402000 MtrunA17_Chr4g0032261 31.902 163 101 4 7 161 3 163 3.74e-14 66.2
Msa1402000 MtrunA17_Chr7g0240701 31.613 155 96 4 9 155 5 157 1.25e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1402000 AT3G62550.1 50.993 151 71 1 9 156 7 157 5.83e-52 163
Msa1402000 AT3G11930.2 38.922 167 88 4 9 161 33 199 1.87e-34 120
Msa1402000 AT3G11930.1 39.157 166 88 4 9 161 33 198 2.11e-34 120
Msa1402000 AT3G11930.4 38.690 168 88 5 9 161 33 200 1.02e-33 118
Msa1402000 AT3G58450.1 38.650 163 88 4 11 161 32 194 7.92e-32 113
Msa1402000 AT3G58450.2 39.375 160 84 3 11 161 32 187 4.05e-31 111
Msa1402000 AT1G09740.2 37.654 162 91 3 11 162 10 171 1.25e-30 109
Msa1402000 AT1G09740.1 37.654 162 91 3 11 162 10 171 1.25e-30 109
Msa1402000 AT2G47710.1 36.875 160 92 4 5 158 3 159 6.59e-30 107
Msa1402000 AT3G11930.3 33.679 193 88 5 9 161 33 225 3.62e-28 104
Msa1402000 AT1G68300.1 36.242 149 92 3 9 155 10 157 5.46e-27 99.8
Msa1402000 AT3G17020.1 36.025 161 84 6 8 155 6 160 3.01e-20 82.4
Msa1402000 AT1G11360.2 29.586 169 104 5 9 165 38 203 2.38e-18 79.3
Msa1402000 AT1G11360.1 29.586 169 104 5 9 165 38 203 2.38e-18 79.3
Msa1402000 AT1G11360.4 29.586 169 104 5 9 165 38 203 2.38e-18 79.3
Msa1402000 AT1G11360.3 29.586 169 104 5 9 165 38 203 2.38e-18 79.3
Msa1402000 AT3G01520.1 31.944 144 93 4 24 164 30 171 1.57e-17 75.9
Msa1402000 AT5G14680.1 29.940 167 103 5 10 164 7 171 8.98e-17 73.9
Msa1402000 AT3G03270.2 30.818 159 94 5 8 155 4 157 2.04e-15 69.7
Msa1402000 AT3G53990.1 28.302 159 96 4 9 155 5 157 3.19e-12 61.6
Msa1402000 AT3G25930.1 29.012 162 87 8 9 156 2 149 3.24e-11 58.5

Find 55 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTCCAGTGGTTGATTT+TGG 0.145041 tig0022800:-28434 None:intergenic
CACATGGTGCCTCAAGAATT+TGG 0.151045 tig0022800:+27738 Msa1402000:CDS
ATATATTGTGCTTCAAATTA+TGG 0.208500 tig0022800:-27541 None:intergenic
TTTCAAATATTAAATGATAA+AGG 0.289136 tig0022800:+28594 Msa1402000:three_prime_UTR
GTTGTTTATTCTGCCTTTGA+TGG 0.302678 tig0022800:+27814 Msa1402000:CDS
TTTCACACTGCTTGATAATT+CGG 0.344578 tig0022800:-27642 None:intergenic
GGCTTCTTCACAATCAAAAC+AGG 0.346785 tig0022800:-28413 None:intergenic
ACAAGTTGCTGATTGTGTTT+TGG 0.353665 tig0022800:+27974 Msa1402000:CDS
GGGTGTTGATATCTTGGTTA+TGG 0.361677 tig0022800:+28194 Msa1402000:CDS
GAGGAGGATAAGGTGATCTT+TGG 0.363644 tig0022800:-27773 None:intergenic
TTGCTATGAACATGTCCTTT+GGG 0.364433 tig0022800:+28535 Msa1402000:three_prime_UTR
ATTGCTATGAACATGTCCTT+TGG 0.383983 tig0022800:+28534 Msa1402000:three_prime_UTR
GCGTGTCTTGTTCCTTCATA+AGG 0.398759 tig0022800:+28562 Msa1402000:three_prime_UTR
AAAAGATATATTCCTTATGA+AGG 0.407539 tig0022800:-28574 None:intergenic
GACATCATTACAGACTATCT+TGG 0.412460 tig0022800:-28003 None:intergenic
GGTGTTGATATCTTGGTTAT+GGG 0.433422 tig0022800:+28195 Msa1402000:CDS
AAACACAATCAGCAACTTGT+TGG 0.448947 tig0022800:-27971 None:intergenic
CCGTTATGTCAGAAGAGAAT+AGG 0.454640 tig0022800:-27929 None:intergenic
CCCTAGGGATGTAATCTGTC+AGG 0.458933 tig0022800:+28158 Msa1402000:CDS
TATTCTGCCTTTGATGGCAC+AGG 0.479279 tig0022800:+27820 Msa1402000:CDS
TTGAATGGCAGGGCTTTCCT+TGG 0.488782 tig0022800:+28353 Msa1402000:intron
ATCTTAATTGTCTCCTCCAG+TGG 0.492223 tig0022800:-28444 None:intergenic
TTGTTGGCTATACTTCTCCA+TGG 0.495342 tig0022800:-27955 None:intergenic
GCTTAACATAGAGGAGGATA+AGG 0.496830 tig0022800:-27783 None:intergenic
ATGGCTGGTATAACAGAAAA+CGG 0.497259 tig0022800:+27664 Msa1402000:CDS
AATTATCAAGCAGTGTGAAA+TGG 0.497338 tig0022800:+27645 Msa1402000:exon
GTGGAGACGAGGATAGAGAA+TGG 0.517274 tig0022800:+28132 Msa1402000:CDS
GTTATGGGAAGCCACGGCTA+TGG 0.518096 tig0022800:+28210 Msa1402000:CDS
GGATAGAGAATGGTGACCCT+AGG 0.527492 tig0022800:+28142 Msa1402000:CDS
CCTATTCTCTTCTGACATAA+CGG 0.542181 tig0022800:+27929 Msa1402000:CDS
ATCAAGCAGTGTGAAATGGC+TGG 0.546216 tig0022800:+27649 Msa1402000:exon
ATCTTGGTTATGGGAAGCCA+CGG 0.562584 tig0022800:+28204 Msa1402000:CDS
AGAAAACGGAAGAAGAATCA+TGG 0.569970 tig0022800:+27678 Msa1402000:CDS
CACGAGGAGGCTTAACATAG+AGG 0.577003 tig0022800:-27792 None:intergenic
AGTGGTTGCTCACACTTCCA+AGG 0.579050 tig0022800:-28370 None:intergenic
TTAATTACCTGTGCCATCAA+AGG 0.579397 tig0022800:-27827 None:intergenic
GATAGAGAATGGTGACCCTA+GGG 0.580628 tig0022800:+28143 Msa1402000:CDS
AAGAAGCCAAAATCAACCAC+TGG 0.584975 tig0022800:+28428 Msa1402000:CDS
GCCTGACAGATTACATCCCT+AGG 0.585000 tig0022800:-28159 None:intergenic
ATCATGGTAGCTATTGATGA+AGG 0.586206 tig0022800:+27694 Msa1402000:CDS
TTCTGACATAACGGCAACCA+TGG 0.586507 tig0022800:+27938 Msa1402000:CDS
ACAAGACACGCACAACCCAA+AGG 0.602143 tig0022800:-28550 None:intergenic
ATTGTGCTTCAAATTATGGT+CGG 0.617713 tig0022800:-27537 None:intergenic
TCGGTTTGAGATAGATCACA+AGG 0.631463 tig0022800:-27623 None:intergenic
ACGGCTATGGTGTCATCAAG+AGG 0.638531 tig0022800:+28223 Msa1402000:CDS
AAGCCAAAATCAACCACTGG+AGG 0.644827 tig0022800:+28431 Msa1402000:CDS
GCTTCTTCACAATCAAAACA+GGG 0.652447 tig0022800:-28412 None:intergenic
ATATGGTTTAGGTGGAGACG+AGG 0.658827 tig0022800:+28121 Msa1402000:intron
CCTGACAGATTACATCCCTA+GGG 0.659449 tig0022800:-28158 None:intergenic
AGAGCATTTATGCTCTCACA+TGG 0.669047 tig0022800:+27722 Msa1402000:CDS
TCTTGATGACACCATAGCCG+TGG 0.679887 tig0022800:-28221 None:intergenic
ACTTCACATTCTGTGCACAG+TGG 0.689187 tig0022800:-28388 None:intergenic
GCAGAATAAACAACACGAGG+AGG 0.692643 tig0022800:-27805 None:intergenic
GAGGAGGCTTAACATAGAGG+AGG 0.704073 tig0022800:-27789 None:intergenic
AAGGCAGAATAAACAACACG+AGG 0.733599 tig0022800:-27808 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAAATATTAAATGATAA+AGG + tig0022800:28594-28613 Msa1402000:three_prime_UTR 10.0%
!! TTTCAAATATTAAATGATAA+AGG + tig0022800:28594-28613 Msa1402000:three_prime_UTR 10.0%
!!! ATATATGTATACTTACATTT+TGG - tig0022800:28028-28047 None:intergenic 15.0%
!! ATTAACTATAGATAAAAATG+AGG - tig0022800:28081-28100 None:intergenic 15.0%
!! TTAATAATTAATCTGTGATA+TGG + tig0022800:28104-28123 Msa1402000:intron 15.0%
!! TGTGAATTGTAAATTTAATT+TGG + tig0022800:28315-28334 Msa1402000:intron 15.0%
!! GAAAAGAAAAAAACAAAATA+AGG - tig0022800:28485-28504 None:intergenic 15.0%
!!! ATATATGTATACTTACATTT+TGG - tig0022800:28028-28047 None:intergenic 15.0%
!! ATTAACTATAGATAAAAATG+AGG - tig0022800:28081-28100 None:intergenic 15.0%
!! TTAATAATTAATCTGTGATA+TGG + tig0022800:28104-28123 Msa1402000:intron 15.0%
!! TGTGAATTGTAAATTTAATT+TGG + tig0022800:28315-28334 Msa1402000:intron 15.0%
!! GAAAAGAAAAAAACAAAATA+AGG - tig0022800:28485-28504 None:intergenic 15.0%
!! ATATATTGTGCTTCAAATTA+TGG - tig0022800:27544-27563 None:intergenic 20.0%
!!! TTGTAAATTTAATTTGGTTC+TGG + tig0022800:28321-28340 Msa1402000:intron 20.0%
!! AAAAGATATATTCCTTATGA+AGG - tig0022800:28577-28596 None:intergenic 20.0%
!! ATATATTGTGCTTCAAATTA+TGG - tig0022800:27544-27563 None:intergenic 20.0%
!!! TTGTAAATTTAATTTGGTTC+TGG + tig0022800:28321-28340 Msa1402000:intron 20.0%
!! AAAAGATATATTCCTTATGA+AGG - tig0022800:28577-28596 None:intergenic 20.0%
! TTTGAAAAACCAAATTCTTG+AGG - tig0022800:27750-27769 None:intergenic 25.0%
! GTATCATATATACATGTTTC+AGG + tig0022800:27903-27922 Msa1402000:intron 25.0%
! ACTATAGATAAAAATGAGGA+GGG - tig0022800:28077-28096 None:intergenic 25.0%
! AACTATAGATAAAAATGAGG+AGG - tig0022800:28078-28097 None:intergenic 25.0%
! ATTAATCTGTGATATGGTTT+AGG + tig0022800:28110-28129 Msa1402000:intron 25.0%
!! ATTTTTGTTAGAATGAGCTA+AGG + tig0022800:28291-28310 Msa1402000:intron 25.0%
! TTTGAAAAACCAAATTCTTG+AGG - tig0022800:27750-27769 None:intergenic 25.0%
! GTATCATATATACATGTTTC+AGG + tig0022800:27903-27922 Msa1402000:intron 25.0%
! ACTATAGATAAAAATGAGGA+GGG - tig0022800:28077-28096 None:intergenic 25.0%
! AACTATAGATAAAAATGAGG+AGG - tig0022800:28078-28097 None:intergenic 25.0%
! ATTAATCTGTGATATGGTTT+AGG + tig0022800:28110-28129 Msa1402000:intron 25.0%
!! ATTTTTGTTAGAATGAGCTA+AGG + tig0022800:28291-28310 Msa1402000:intron 25.0%
ATTGTGCTTCAAATTATGGT+CGG - tig0022800:27540-27559 None:intergenic 30.0%
! TTTCACACTGCTTGATAATT+CGG - tig0022800:27645-27664 None:intergenic 30.0%
AATTATCAAGCAGTGTGAAA+TGG + tig0022800:27645-27664 Msa1402000:exon 30.0%
!! AAAAATGGGTGTTGATATCT+TGG + tig0022800:28188-28207 Msa1402000:CDS 30.0%
ATTGTGCTTCAAATTATGGT+CGG - tig0022800:27540-27559 None:intergenic 30.0%
! TTTCACACTGCTTGATAATT+CGG - tig0022800:27645-27664 None:intergenic 30.0%
AATTATCAAGCAGTGTGAAA+TGG + tig0022800:27645-27664 Msa1402000:exon 30.0%
!! AAAAATGGGTGTTGATATCT+TGG + tig0022800:28188-28207 Msa1402000:CDS 30.0%
ATGGCTGGTATAACAGAAAA+CGG + tig0022800:27664-27683 Msa1402000:CDS 35.0%
AGAAAACGGAAGAAGAATCA+TGG + tig0022800:27678-27697 Msa1402000:CDS 35.0%
ATCATGGTAGCTATTGATGA+AGG + tig0022800:27694-27713 Msa1402000:CDS 35.0%
GTTGTTTATTCTGCCTTTGA+TGG + tig0022800:27814-27833 Msa1402000:CDS 35.0%
TTAATTACCTGTGCCATCAA+AGG - tig0022800:27830-27849 None:intergenic 35.0%
CCTATTCTCTTCTGACATAA+CGG + tig0022800:27929-27948 Msa1402000:CDS 35.0%
AAACACAATCAGCAACTTGT+TGG - tig0022800:27974-27993 None:intergenic 35.0%
!! ACAAGTTGCTGATTGTGTTT+TGG + tig0022800:27974-27993 Msa1402000:CDS 35.0%
GACATCATTACAGACTATCT+TGG - tig0022800:28006-28025 None:intergenic 35.0%
AATCTGTGATATGGTTTAGG+TGG + tig0022800:28113-28132 Msa1402000:intron 35.0%
TGTCAGGCTGTTCAAAAAAT+GGG + tig0022800:28174-28193 Msa1402000:CDS 35.0%
!! GGTGTTGATATCTTGGTTAT+GGG + tig0022800:28195-28214 Msa1402000:CDS 35.0%
! TTCTGGCTGTTATTGTTGAA+TGG + tig0022800:28338-28357 Msa1402000:intron 35.0%
GCTTCTTCACAATCAAAACA+GGG - tig0022800:28415-28434 None:intergenic 35.0%
ATTGCTATGAACATGTCCTT+TGG + tig0022800:28534-28553 Msa1402000:three_prime_UTR 35.0%
TTGCTATGAACATGTCCTTT+GGG + tig0022800:28535-28554 Msa1402000:three_prime_UTR 35.0%
ATGGCTGGTATAACAGAAAA+CGG + tig0022800:27664-27683 Msa1402000:CDS 35.0%
AGAAAACGGAAGAAGAATCA+TGG + tig0022800:27678-27697 Msa1402000:CDS 35.0%
ATCATGGTAGCTATTGATGA+AGG + tig0022800:27694-27713 Msa1402000:CDS 35.0%
GTTGTTTATTCTGCCTTTGA+TGG + tig0022800:27814-27833 Msa1402000:CDS 35.0%
TTAATTACCTGTGCCATCAA+AGG - tig0022800:27830-27849 None:intergenic 35.0%
CCTATTCTCTTCTGACATAA+CGG + tig0022800:27929-27948 Msa1402000:CDS 35.0%
AAACACAATCAGCAACTTGT+TGG - tig0022800:27974-27993 None:intergenic 35.0%
!! ACAAGTTGCTGATTGTGTTT+TGG + tig0022800:27974-27993 Msa1402000:CDS 35.0%
GACATCATTACAGACTATCT+TGG - tig0022800:28006-28025 None:intergenic 35.0%
AATCTGTGATATGGTTTAGG+TGG + tig0022800:28113-28132 Msa1402000:intron 35.0%
TGTCAGGCTGTTCAAAAAAT+GGG + tig0022800:28174-28193 Msa1402000:CDS 35.0%
!! GGTGTTGATATCTTGGTTAT+GGG + tig0022800:28195-28214 Msa1402000:CDS 35.0%
! TTCTGGCTGTTATTGTTGAA+TGG + tig0022800:28338-28357 Msa1402000:intron 35.0%
GCTTCTTCACAATCAAAACA+GGG - tig0022800:28415-28434 None:intergenic 35.0%
ATTGCTATGAACATGTCCTT+TGG + tig0022800:28534-28553 Msa1402000:three_prime_UTR 35.0%
TTGCTATGAACATGTCCTTT+GGG + tig0022800:28535-28554 Msa1402000:three_prime_UTR 35.0%
! TCGGTTTGAGATAGATCACA+AGG - tig0022800:27626-27645 None:intergenic 40.0%
! AGAGCATTTATGCTCTCACA+TGG + tig0022800:27722-27741 Msa1402000:CDS 40.0%
GCTTAACATAGAGGAGGATA+AGG - tig0022800:27786-27805 None:intergenic 40.0%
AAGGCAGAATAAACAACACG+AGG - tig0022800:27811-27830 None:intergenic 40.0%
CCGTTATGTCAGAAGAGAAT+AGG - tig0022800:27932-27951 None:intergenic 40.0%
! TTGTTGGCTATACTTCTCCA+TGG - tig0022800:27958-27977 None:intergenic 40.0%
CTGTCAGGCTGTTCAAAAAA+TGG + tig0022800:28173-28192 Msa1402000:CDS 40.0%
!! GGGTGTTGATATCTTGGTTA+TGG + tig0022800:28194-28213 Msa1402000:CDS 40.0%
GCTGTTATTGTTGAATGGCA+GGG + tig0022800:28343-28362 Msa1402000:intron 40.0%
GGCTTCTTCACAATCAAAAC+AGG - tig0022800:28416-28435 None:intergenic 40.0%
AAGAAGCCAAAATCAACCAC+TGG + tig0022800:28428-28447 Msa1402000:CDS 40.0%
ATCTTAATTGTCTCCTCCAG+TGG - tig0022800:28447-28466 None:intergenic 40.0%
! TCGGTTTGAGATAGATCACA+AGG - tig0022800:27626-27645 None:intergenic 40.0%
! AGAGCATTTATGCTCTCACA+TGG + tig0022800:27722-27741 Msa1402000:CDS 40.0%
GCTTAACATAGAGGAGGATA+AGG - tig0022800:27786-27805 None:intergenic 40.0%
AAGGCAGAATAAACAACACG+AGG - tig0022800:27811-27830 None:intergenic 40.0%
CCGTTATGTCAGAAGAGAAT+AGG - tig0022800:27932-27951 None:intergenic 40.0%
! TTGTTGGCTATACTTCTCCA+TGG - tig0022800:27958-27977 None:intergenic 40.0%
CTGTCAGGCTGTTCAAAAAA+TGG + tig0022800:28173-28192 Msa1402000:CDS 40.0%
!! GGGTGTTGATATCTTGGTTA+TGG + tig0022800:28194-28213 Msa1402000:CDS 40.0%
GCTGTTATTGTTGAATGGCA+GGG + tig0022800:28343-28362 Msa1402000:intron 40.0%
GGCTTCTTCACAATCAAAAC+AGG - tig0022800:28416-28435 None:intergenic 40.0%
AAGAAGCCAAAATCAACCAC+TGG + tig0022800:28428-28447 Msa1402000:CDS 40.0%
ATCTTAATTGTCTCCTCCAG+TGG - tig0022800:28447-28466 None:intergenic 40.0%
ATCAAGCAGTGTGAAATGGC+TGG + tig0022800:27649-27668 Msa1402000:exon 45.0%
CACATGGTGCCTCAAGAATT+TGG + tig0022800:27738-27757 Msa1402000:CDS 45.0%
GAGGAGGATAAGGTGATCTT+TGG - tig0022800:27776-27795 None:intergenic 45.0%
GCAGAATAAACAACACGAGG+AGG - tig0022800:27808-27827 None:intergenic 45.0%
! TATTCTGCCTTTGATGGCAC+AGG + tig0022800:27820-27839 Msa1402000:CDS 45.0%
TTCTGACATAACGGCAACCA+TGG + tig0022800:27938-27957 Msa1402000:CDS 45.0%
ATATGGTTTAGGTGGAGACG+AGG + tig0022800:28121-28140 Msa1402000:intron 45.0%
GATAGAGAATGGTGACCCTA+GGG + tig0022800:28143-28162 Msa1402000:CDS 45.0%
CCTGACAGATTACATCCCTA+GGG - tig0022800:28161-28180 None:intergenic 45.0%
ATCTTGGTTATGGGAAGCCA+CGG + tig0022800:28204-28223 Msa1402000:CDS 45.0%
GGCTGTTATTGTTGAATGGC+AGG + tig0022800:28342-28361 Msa1402000:intron 45.0%
ACTTCACATTCTGTGCACAG+TGG - tig0022800:28391-28410 None:intergenic 45.0%
AAGCCAAAATCAACCACTGG+AGG + tig0022800:28431-28450 Msa1402000:CDS 45.0%
!! TCTCCTCCAGTGGTTGATTT+TGG - tig0022800:28437-28456 None:intergenic 45.0%
! GCGTGTCTTGTTCCTTCATA+AGG + tig0022800:28562-28581 Msa1402000:three_prime_UTR 45.0%
ATCAAGCAGTGTGAAATGGC+TGG + tig0022800:27649-27668 Msa1402000:exon 45.0%
CACATGGTGCCTCAAGAATT+TGG + tig0022800:27738-27757 Msa1402000:CDS 45.0%
GAGGAGGATAAGGTGATCTT+TGG - tig0022800:27776-27795 None:intergenic 45.0%
GCAGAATAAACAACACGAGG+AGG - tig0022800:27808-27827 None:intergenic 45.0%
! TATTCTGCCTTTGATGGCAC+AGG + tig0022800:27820-27839 Msa1402000:CDS 45.0%
TTCTGACATAACGGCAACCA+TGG + tig0022800:27938-27957 Msa1402000:CDS 45.0%
ATATGGTTTAGGTGGAGACG+AGG + tig0022800:28121-28140 Msa1402000:intron 45.0%
GATAGAGAATGGTGACCCTA+GGG + tig0022800:28143-28162 Msa1402000:CDS 45.0%
CCTGACAGATTACATCCCTA+GGG - tig0022800:28161-28180 None:intergenic 45.0%
ATCTTGGTTATGGGAAGCCA+CGG + tig0022800:28204-28223 Msa1402000:CDS 45.0%
GGCTGTTATTGTTGAATGGC+AGG + tig0022800:28342-28361 Msa1402000:intron 45.0%
ACTTCACATTCTGTGCACAG+TGG - tig0022800:28391-28410 None:intergenic 45.0%
AAGCCAAAATCAACCACTGG+AGG + tig0022800:28431-28450 Msa1402000:CDS 45.0%
!! TCTCCTCCAGTGGTTGATTT+TGG - tig0022800:28437-28456 None:intergenic 45.0%
! GCGTGTCTTGTTCCTTCATA+AGG + tig0022800:28562-28581 Msa1402000:three_prime_UTR 45.0%
GAGGAGGCTTAACATAGAGG+AGG - tig0022800:27792-27811 None:intergenic 50.0%
CACGAGGAGGCTTAACATAG+AGG - tig0022800:27795-27814 None:intergenic 50.0%
GTGGAGACGAGGATAGAGAA+TGG + tig0022800:28132-28151 Msa1402000:CDS 50.0%
GGATAGAGAATGGTGACCCT+AGG + tig0022800:28142-28161 Msa1402000:CDS 50.0%
CCCTAGGGATGTAATCTGTC+AGG + tig0022800:28158-28177 Msa1402000:CDS 50.0%
GCCTGACAGATTACATCCCT+AGG - tig0022800:28162-28181 None:intergenic 50.0%
! TCTTGATGACACCATAGCCG+TGG - tig0022800:28224-28243 None:intergenic 50.0%
!! ACGGCTATGGTGTCATCAAG+AGG + tig0022800:28223-28242 Msa1402000:CDS 50.0%
TTGAATGGCAGGGCTTTCCT+TGG + tig0022800:28353-28372 Msa1402000:intron 50.0%
AGTGGTTGCTCACACTTCCA+AGG - tig0022800:28373-28392 None:intergenic 50.0%
ACAAGACACGCACAACCCAA+AGG - tig0022800:28553-28572 None:intergenic 50.0%
GAGGAGGCTTAACATAGAGG+AGG - tig0022800:27792-27811 None:intergenic 50.0%
CACGAGGAGGCTTAACATAG+AGG - tig0022800:27795-27814 None:intergenic 50.0%
GTGGAGACGAGGATAGAGAA+TGG + tig0022800:28132-28151 Msa1402000:CDS 50.0%
GGATAGAGAATGGTGACCCT+AGG + tig0022800:28142-28161 Msa1402000:CDS 50.0%
CCCTAGGGATGTAATCTGTC+AGG + tig0022800:28158-28177 Msa1402000:CDS 50.0%
GCCTGACAGATTACATCCCT+AGG - tig0022800:28162-28181 None:intergenic 50.0%
! TCTTGATGACACCATAGCCG+TGG - tig0022800:28224-28243 None:intergenic 50.0%
!! ACGGCTATGGTGTCATCAAG+AGG + tig0022800:28223-28242 Msa1402000:CDS 50.0%
TTGAATGGCAGGGCTTTCCT+TGG + tig0022800:28353-28372 Msa1402000:intron 50.0%
AGTGGTTGCTCACACTTCCA+AGG - tig0022800:28373-28392 None:intergenic 50.0%
ACAAGACACGCACAACCCAA+AGG - tig0022800:28553-28572 None:intergenic 50.0%
GTTATGGGAAGCCACGGCTA+TGG + tig0022800:28210-28229 Msa1402000:CDS 55.0%
GTTATGGGAAGCCACGGCTA+TGG + tig0022800:28210-28229 Msa1402000:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0022800 gene 27517 28621 27517 ID=Msa1402000;Name=Msa1402000
tig0022800 mRNA 27517 28621 27517 ID=Msa1402000-mRNA-1;Parent=Msa1402000;Name=Msa1402000-mRNA-1;_AED=0.08;_eAED=0.08;_QI=147|1|1|1|1|1|4|158|165
tig0022800 exon 27517 27841 27517 ID=Msa1402000-mRNA-1:exon:18686;Parent=Msa1402000-mRNA-1
tig0022800 exon 27925 28031 27925 ID=Msa1402000-mRNA-1:exon:18687;Parent=Msa1402000-mRNA-1
tig0022800 exon 28132 28244 28132 ID=Msa1402000-mRNA-1:exon:18688;Parent=Msa1402000-mRNA-1
tig0022800 exon 28364 28621 28364 ID=Msa1402000-mRNA-1:exon:18689;Parent=Msa1402000-mRNA-1
tig0022800 five_prime_UTR 27517 27663 27517 ID=Msa1402000-mRNA-1:five_prime_utr;Parent=Msa1402000-mRNA-1
tig0022800 CDS 27664 27841 27664 ID=Msa1402000-mRNA-1:cds;Parent=Msa1402000-mRNA-1
tig0022800 CDS 27925 28031 27925 ID=Msa1402000-mRNA-1:cds;Parent=Msa1402000-mRNA-1
tig0022800 CDS 28132 28244 28132 ID=Msa1402000-mRNA-1:cds;Parent=Msa1402000-mRNA-1
tig0022800 CDS 28364 28463 28364 ID=Msa1402000-mRNA-1:cds;Parent=Msa1402000-mRNA-1
tig0022800 three_prime_UTR 28464 28621 28464 ID=Msa1402000-mRNA-1:three_prime_utr;Parent=Msa1402000-mRNA-1
Gene Sequence

>Msa1402000

ATGGCTGGTATAACAGAAAACGGAAGAAGAATCATGGTAGCTATTGATGAAGGTGAAGAGAGCATTTATGCTCTCACATGGTGCCTCAAGAATTTGGTTTTTCAAAATTCCAAAGATCACCTTATCCTCCTCTATGTTAAGCCTCCTCGTGTTGTTTATTCTGCCTTTGATGGCACAGGATACCTATTCTCTTCTGACATAACGGCAACCATGGAGAAGTATAGCCAACAAGTTGCTGATTGTGTTTTGGAGAAAGCCAAGATAGTCTGTAATGATGTCCAAAATGTGGAGACGAGGATAGAGAATGGTGACCCTAGGGATGTAATCTGTCAGGCTGTTCAAAAAATGGGTGTTGATATCTTGGTTATGGGAAGCCACGGCTATGGTGTCATCAAGAGGGCTTTCCTTGGAAGTGTGAGCAACCACTGTGCACAGAATGTGAAGTGCCCTGTTTTGATTGTGAAGAAGCCAAAATCAACCACTGGAGGAGACAATTAA

Protein sequence

>Msa1402000

MAGITENGRRIMVAIDEGEESIYALTWCLKNLVFQNSKDHLILLYVKPPRVVYSAFDGTGYLFSSDITATMEKYSQQVADCVLEKAKIVCNDVQNVETRIENGDPRDVICQAVQKMGVDILVMGSHGYGVIKRAFLGSVSNHCAQNVKCPVLIVKKPKSTTGGDN*