AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0080360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080360 MtrunA17_Chr1g0192651 97.794 136 3 0 4 139 30 165 6.35e-97 276
Msa0080360 MtrunA17_Chr1g0194801 51.587 126 56 2 10 131 34 158 2.93e-43 139
Msa0080360 MtrunA17_Chr1g0176311 46.078 102 54 1 32 132 83 184 6.06e-27 99.4
Msa0080360 MtrunA17_Chr1g0195661 39.370 127 75 1 9 133 39 165 3.46e-25 94.0
Msa0080360 MtrunA17_Chr1g0176321 38.931 131 73 3 9 132 41 171 1.42e-24 92.8
Msa0080360 MtrunA17_Chr5g0427291 36.508 126 68 3 15 129 46 170 4.55e-23 89.0
Msa0080360 MtrunA17_Chr7g0269301 42.500 120 65 2 15 132 42 159 1.19e-20 82.4
Msa0080360 MtrunA17_Chr4g0001641 47.222 72 38 0 67 138 3 74 1.13e-18 74.7
Msa0080360 MtrunA17_Chr2g0323291 30.657 137 83 3 13 137 53 189 4.82e-15 68.9
Msa0080360 MtrunA17_Chr6g0450171 29.921 127 85 3 14 138 47 171 9.56e-15 67.4
Msa0080360 MtrunA17_Chr5g0433951 33.088 136 77 4 10 134 30 162 1.18e-14 67.0
Msa0080360 MtrunA17_Chr4g0008801 41.860 86 49 1 45 129 72 157 4.11e-13 62.8
Msa0080360 MtrunA17_Chr2g0294421 31.250 128 74 3 13 129 33 157 8.81e-13 62.0
Msa0080360 MtrunA17_Chr4g0032261 44.444 63 35 0 73 135 101 163 1.59e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080360 AT3G62550.1 50.407 123 58 1 11 130 35 157 1.56e-40 133
Msa0080360 AT3G11930.2 40.945 127 69 2 15 135 73 199 1.99e-27 101
Msa0080360 AT3G11930.1 41.270 126 69 2 15 135 73 198 2.74e-27 100
Msa0080360 AT3G58450.1 39.535 129 74 3 15 139 70 198 3.58e-27 100
Msa0080360 AT3G11930.4 40.625 128 69 3 15 135 73 200 9.78e-27 99.4
Msa0080360 AT3G58450.2 41.803 122 66 2 15 135 70 187 1.91e-26 98.6
Msa0080360 AT1G09740.2 37.692 130 73 2 15 136 42 171 2.00e-25 95.1
Msa0080360 AT1G09740.1 37.692 130 73 2 15 136 42 171 2.00e-25 95.1
Msa0080360 AT2G47710.1 39.167 120 68 2 15 132 43 159 5.47e-23 88.6
Msa0080360 AT3G11930.3 33.987 153 69 3 15 135 73 225 2.74e-21 85.9
Msa0080360 AT1G68300.1 34.454 119 76 2 13 129 39 157 3.86e-21 84.0
Msa0080360 AT3G01520.1 42.647 68 39 0 71 138 104 171 4.78e-15 68.6
Msa0080360 AT3G03270.2 52.830 53 25 0 77 129 105 157 1.43e-14 67.0
Msa0080360 AT3G17020.1 34.615 130 68 5 13 129 35 160 5.76e-14 65.5
Msa0080360 AT5G14680.1 30.159 126 84 3 15 138 48 171 6.63e-13 62.8
Msa0080360 AT1G11360.2 29.054 148 84 5 8 139 61 203 1.20e-11 60.5
Msa0080360 AT1G11360.1 29.054 148 84 5 8 139 61 203 1.20e-11 60.5
Msa0080360 AT1G11360.4 29.054 148 84 5 8 139 61 203 1.20e-11 60.5
Msa0080360 AT1G11360.3 29.054 148 84 5 8 139 61 203 1.20e-11 60.5

Find 55 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTCCAGTGGTTGATTT+TGG 0.145041 1_2:-58636395 None:intergenic
TTTCAAATATTAAATGATAA+AGG 0.289136 1_2:+58636559 Msa0080360:three_prime_UTR
GTTGTTTATTCTGCCTTTGA+TGG 0.302678 1_2:+58635753 Msa0080360:CDS
TTTCACACTGCTTGATAATT+CGG 0.344578 1_2:-58635582 None:intergenic
GGCTTCTTCACAATCAAAAC+AGG 0.346785 1_2:-58636374 None:intergenic
ACAAGTTGCTGATTGTGTTT+TGG 0.353665 1_2:+58635920 Msa0080360:CDS
GCTTGTCTTGTTCCTTCATA+AGG 0.358103 1_2:+58636527 Msa0080360:three_prime_UTR
GGGTGTTGATATCTTGGTTA+TGG 0.361677 1_2:+58636155 Msa0080360:CDS
GCTTAACATAGAGGAGAATA+AGG 0.362554 1_2:-58635722 None:intergenic
GAGGAGAATAAGGTGATCTT+TGG 0.363644 1_2:-58635712 None:intergenic
TTGCTATGAACATGTCCTTT+GGG 0.364433 1_2:+58636500 Msa0080360:three_prime_UTR
ATTGCTATGAACATGTCCTT+TGG 0.383983 1_2:+58636499 Msa0080360:three_prime_UTR
CACATCATTACAGACTATCT+TGG 0.392607 1_2:-58635949 None:intergenic
CACATGGTGCCTCAAGAACT+TGG 0.402802 1_2:+58635678 Msa0080360:exon
AAAAGATATATTCCTTATGA+AGG 0.407539 1_2:-58636539 None:intergenic
GGTGTTGATATCTTGGTTAT+GGG 0.433422 1_2:+58636156 Msa0080360:CDS
AAACACAATCAGCAACTTGT+TGG 0.448947 1_2:-58635917 None:intergenic
CCGTTATGTCAGAAGAGAAT+AGG 0.454640 1_2:-58635875 None:intergenic
CCCTAGGGATGTAATCTGTC+AGG 0.458933 1_2:+58636119 Msa0080360:CDS
TATTCTGCCTTTGATGGCAC+AGG 0.479279 1_2:+58635759 Msa0080360:CDS
TTGAATGGCAGGGCTTTCCT+TGG 0.488782 1_2:+58636314 Msa0080360:intron
ATCTTAATTGTCTCCTCCAG+TGG 0.492223 1_2:-58636405 None:intergenic
TTGTTGGCTATACTTCTCCA+TGG 0.495342 1_2:-58635901 None:intergenic
ATGGCTGGTATAACAGAAAA+CGG 0.497259 1_2:+58635604 Msa0080360:five_prime_UTR
AATTATCAAGCAGTGTGAAA+TGG 0.497338 1_2:+58635585 Msa0080360:five_prime_UTR
GTGGAGACGAGGATAGAGAA+TGG 0.517274 1_2:+58636093 Msa0080360:CDS
GTTATGGGAAGCCACGGCTA+TGG 0.518096 1_2:+58636171 Msa0080360:CDS
GGATAGAGAATGGTGACCCT+AGG 0.527492 1_2:+58636103 Msa0080360:CDS
CCTATTCTCTTCTGACATAA+CGG 0.542181 1_2:+58635875 Msa0080360:CDS
ATCAAGCAGTGTGAAATGGC+TGG 0.546216 1_2:+58635589 Msa0080360:five_prime_UTR
AAATATTCAGTAGTTTGTAG+AGG 0.555908 1_2:-58635515 None:intergenic
ATCTTGGTTATGGGAAGCCA+CGG 0.562584 1_2:+58636165 Msa0080360:CDS
AGAAAACGGAAGAAGAATCA+TGG 0.569970 1_2:+58635618 Msa0080360:five_prime_UTR
CACGAGGAGGCTTAACATAG+AGG 0.577003 1_2:-58635731 None:intergenic
AGTGGTTGCTCACACTTCCA+AGG 0.579050 1_2:-58636331 None:intergenic
TTAATTACCTGTGCCATCAA+AGG 0.579397 1_2:-58635766 None:intergenic
GATAGAGAATGGTGACCCTA+GGG 0.580628 1_2:+58636104 Msa0080360:CDS
ATTGTGATTCAAATTATGAT+CGG 0.581201 1_2:-58635477 None:intergenic
AAGAAGCCAAAATCAACCAC+TGG 0.584975 1_2:+58636389 Msa0080360:CDS
GCCTGACAGATTACATCCCT+AGG 0.585000 1_2:-58636120 None:intergenic
ATCATGGTAGCTATTGATGA+AGG 0.586206 1_2:+58635634 Msa0080360:five_prime_UTR
TTCTGACATAACGGCAACCA+TGG 0.586507 1_2:+58635884 Msa0080360:CDS
ACAAGACAAGCACAACCCAA+AGG 0.608357 1_2:-58636515 None:intergenic
TCGGTTTCAGATAGATCACA+AGG 0.621880 1_2:-58635563 None:intergenic
ACGGCTATGGTGTCATCAAG+AGG 0.638531 1_2:+58636184 Msa0080360:CDS
AAGCCAAAATCAACCACTGG+AGG 0.644827 1_2:+58636392 Msa0080360:CDS
TGTTCATAGCAATAGCAACA+AGG 0.651321 1_2:-58636489 None:intergenic
GCTTCTTCACAATCAAAACA+GGG 0.652447 1_2:-58636373 None:intergenic
ATATGGTTTAGGTGGAGACG+AGG 0.658827 1_2:+58636082 Msa0080360:intron
CCTGACAGATTACATCCCTA+GGG 0.659449 1_2:-58636119 None:intergenic
AGAGCATTTATGCTCTCACA+TGG 0.669047 1_2:+58635662 Msa0080360:exon
TCTTGATGACACCATAGCCG+TGG 0.679887 1_2:-58636182 None:intergenic
ACTTCACATTCTGTGCACAG+TGG 0.689187 1_2:-58636349 None:intergenic
GCAGAATAAACAACACGAGG+AGG 0.692643 1_2:-58635744 None:intergenic
AAGGCAGAATAAACAACACG+AGG 0.733599 1_2:-58635747 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAAAAAACAAAATA+AGG - chr1_2:58636446-58636465 None:intergenic 10.0%
!! TTTCAAATATTAAATGATAA+AGG + chr1_2:58636559-58636578 Msa0080360:three_prime_UTR 10.0%
!! AAAAGAAAAAAAACAAAATA+AGG - chr1_2:58636446-58636465 None:intergenic 10.0%
!! TTTCAAATATTAAATGATAA+AGG + chr1_2:58636559-58636578 Msa0080360:three_prime_UTR 10.0%
!! TTAATAATTAATCTGTGATA+TGG + chr1_2:58636065-58636084 Msa0080360:intron 15.0%
!! TGTGAATTGTAAATTTAATT+TGG + chr1_2:58636276-58636295 Msa0080360:intron 15.0%
!! TTAATAATTAATCTGTGATA+TGG + chr1_2:58636065-58636084 Msa0080360:intron 15.0%
!! TGTGAATTGTAAATTTAATT+TGG + chr1_2:58636276-58636295 Msa0080360:intron 15.0%
!! ATTGTGATTCAAATTATGAT+CGG - chr1_2:58635480-58635499 None:intergenic 20.0%
!! GGTAATTAAACAAAATTTCA+TGG + chr1_2:58635780-58635799 Msa0080360:intron 20.0%
!! TTGTATCATATATATGTTTC+AGG + chr1_2:58635849-58635868 Msa0080360:intron 20.0%
!! ACTATAGATAAAAATGAGAA+GGG - chr1_2:58636038-58636057 None:intergenic 20.0%
!! AACTATAGATAAAAATGAGA+AGG - chr1_2:58636039-58636058 None:intergenic 20.0%
!!! TTGTAAATTTAATTTGGTTC+TGG + chr1_2:58636282-58636301 Msa0080360:intron 20.0%
!! AAAAGATATATTCCTTATGA+AGG - chr1_2:58636542-58636561 None:intergenic 20.0%
!! ATTGTGATTCAAATTATGAT+CGG - chr1_2:58635480-58635499 None:intergenic 20.0%
!! GGTAATTAAACAAAATTTCA+TGG + chr1_2:58635780-58635799 Msa0080360:intron 20.0%
!! TTGTATCATATATATGTTTC+AGG + chr1_2:58635849-58635868 Msa0080360:intron 20.0%
!! ACTATAGATAAAAATGAGAA+GGG - chr1_2:58636038-58636057 None:intergenic 20.0%
!! AACTATAGATAAAAATGAGA+AGG - chr1_2:58636039-58636058 None:intergenic 20.0%
!!! TTGTAAATTTAATTTGGTTC+TGG + chr1_2:58636282-58636301 Msa0080360:intron 20.0%
!! AAAAGATATATTCCTTATGA+AGG - chr1_2:58636542-58636561 None:intergenic 20.0%
!! AAATATTCAGTAGTTTGTAG+AGG - chr1_2:58635518-58635537 None:intergenic 25.0%
! CTATAGATAAAAATGAGAAG+GGG - chr1_2:58636037-58636056 None:intergenic 25.0%
! ATTAATCTGTGATATGGTTT+AGG + chr1_2:58636071-58636090 Msa0080360:intron 25.0%
!! ATTTTTGTTAGAATGAGCTA+AGG + chr1_2:58636252-58636271 Msa0080360:intron 25.0%
!! AAATATTCAGTAGTTTGTAG+AGG - chr1_2:58635518-58635537 None:intergenic 25.0%
! CTATAGATAAAAATGAGAAG+GGG - chr1_2:58636037-58636056 None:intergenic 25.0%
! ATTAATCTGTGATATGGTTT+AGG + chr1_2:58636071-58636090 Msa0080360:intron 25.0%
!! ATTTTTGTTAGAATGAGCTA+AGG + chr1_2:58636252-58636271 Msa0080360:intron 25.0%
! TTTCACACTGCTTGATAATT+CGG - chr1_2:58635585-58635604 None:intergenic 30.0%
AATTATCAAGCAGTGTGAAA+TGG + chr1_2:58635585-58635604 Msa0080360:five_prime_UTR 30.0%
!! TTTTGAAAACCAAGTTCTTG+AGG - chr1_2:58635690-58635709 None:intergenic 30.0%
!! AAAAATGGGTGTTGATATCT+TGG + chr1_2:58636149-58636168 Msa0080360:CDS 30.0%
! TTTCACACTGCTTGATAATT+CGG - chr1_2:58635585-58635604 None:intergenic 30.0%
AATTATCAAGCAGTGTGAAA+TGG + chr1_2:58635585-58635604 Msa0080360:five_prime_UTR 30.0%
!! TTTTGAAAACCAAGTTCTTG+AGG - chr1_2:58635690-58635709 None:intergenic 30.0%
!! AAAAATGGGTGTTGATATCT+TGG + chr1_2:58636149-58636168 Msa0080360:CDS 30.0%
ATGGCTGGTATAACAGAAAA+CGG + chr1_2:58635604-58635623 Msa0080360:five_prime_UTR 35.0%
AGAAAACGGAAGAAGAATCA+TGG + chr1_2:58635618-58635637 Msa0080360:five_prime_UTR 35.0%
ATCATGGTAGCTATTGATGA+AGG + chr1_2:58635634-58635653 Msa0080360:five_prime_UTR 35.0%
GCTTAACATAGAGGAGAATA+AGG - chr1_2:58635725-58635744 None:intergenic 35.0%
GTTGTTTATTCTGCCTTTGA+TGG + chr1_2:58635753-58635772 Msa0080360:CDS 35.0%
TTAATTACCTGTGCCATCAA+AGG - chr1_2:58635769-58635788 None:intergenic 35.0%
CCTATTCTCTTCTGACATAA+CGG + chr1_2:58635875-58635894 Msa0080360:CDS 35.0%
AAACACAATCAGCAACTTGT+TGG - chr1_2:58635920-58635939 None:intergenic 35.0%
!! ACAAGTTGCTGATTGTGTTT+TGG + chr1_2:58635920-58635939 Msa0080360:CDS 35.0%
CACATCATTACAGACTATCT+TGG - chr1_2:58635952-58635971 None:intergenic 35.0%
AATCTGTGATATGGTTTAGG+TGG + chr1_2:58636074-58636093 Msa0080360:intron 35.0%
TGTCAGGCTGTTCAAAAAAT+GGG + chr1_2:58636135-58636154 Msa0080360:CDS 35.0%
!! GGTGTTGATATCTTGGTTAT+GGG + chr1_2:58636156-58636175 Msa0080360:CDS 35.0%
! TTCTGGCTGTTATTGTTGAA+TGG + chr1_2:58636299-58636318 Msa0080360:intron 35.0%
GCTTCTTCACAATCAAAACA+GGG - chr1_2:58636376-58636395 None:intergenic 35.0%
TGTTCATAGCAATAGCAACA+AGG - chr1_2:58636492-58636511 None:intergenic 35.0%
ATTGCTATGAACATGTCCTT+TGG + chr1_2:58636499-58636518 Msa0080360:three_prime_UTR 35.0%
TTGCTATGAACATGTCCTTT+GGG + chr1_2:58636500-58636519 Msa0080360:three_prime_UTR 35.0%
ATGGCTGGTATAACAGAAAA+CGG + chr1_2:58635604-58635623 Msa0080360:five_prime_UTR 35.0%
AGAAAACGGAAGAAGAATCA+TGG + chr1_2:58635618-58635637 Msa0080360:five_prime_UTR 35.0%
ATCATGGTAGCTATTGATGA+AGG + chr1_2:58635634-58635653 Msa0080360:five_prime_UTR 35.0%
GCTTAACATAGAGGAGAATA+AGG - chr1_2:58635725-58635744 None:intergenic 35.0%
GTTGTTTATTCTGCCTTTGA+TGG + chr1_2:58635753-58635772 Msa0080360:CDS 35.0%
TTAATTACCTGTGCCATCAA+AGG - chr1_2:58635769-58635788 None:intergenic 35.0%
CCTATTCTCTTCTGACATAA+CGG + chr1_2:58635875-58635894 Msa0080360:CDS 35.0%
AAACACAATCAGCAACTTGT+TGG - chr1_2:58635920-58635939 None:intergenic 35.0%
!! ACAAGTTGCTGATTGTGTTT+TGG + chr1_2:58635920-58635939 Msa0080360:CDS 35.0%
CACATCATTACAGACTATCT+TGG - chr1_2:58635952-58635971 None:intergenic 35.0%
AATCTGTGATATGGTTTAGG+TGG + chr1_2:58636074-58636093 Msa0080360:intron 35.0%
TGTCAGGCTGTTCAAAAAAT+GGG + chr1_2:58636135-58636154 Msa0080360:CDS 35.0%
!! GGTGTTGATATCTTGGTTAT+GGG + chr1_2:58636156-58636175 Msa0080360:CDS 35.0%
! TTCTGGCTGTTATTGTTGAA+TGG + chr1_2:58636299-58636318 Msa0080360:intron 35.0%
GCTTCTTCACAATCAAAACA+GGG - chr1_2:58636376-58636395 None:intergenic 35.0%
TGTTCATAGCAATAGCAACA+AGG - chr1_2:58636492-58636511 None:intergenic 35.0%
ATTGCTATGAACATGTCCTT+TGG + chr1_2:58636499-58636518 Msa0080360:three_prime_UTR 35.0%
TTGCTATGAACATGTCCTTT+GGG + chr1_2:58636500-58636519 Msa0080360:three_prime_UTR 35.0%
TCGGTTTCAGATAGATCACA+AGG - chr1_2:58635566-58635585 None:intergenic 40.0%
! AGAGCATTTATGCTCTCACA+TGG + chr1_2:58635662-58635681 Msa0080360:exon 40.0%
GAGGAGAATAAGGTGATCTT+TGG - chr1_2:58635715-58635734 None:intergenic 40.0%
AAGGCAGAATAAACAACACG+AGG - chr1_2:58635750-58635769 None:intergenic 40.0%
CCGTTATGTCAGAAGAGAAT+AGG - chr1_2:58635878-58635897 None:intergenic 40.0%
! TTGTTGGCTATACTTCTCCA+TGG - chr1_2:58635904-58635923 None:intergenic 40.0%
CTGTCAGGCTGTTCAAAAAA+TGG + chr1_2:58636134-58636153 Msa0080360:CDS 40.0%
!! GGGTGTTGATATCTTGGTTA+TGG + chr1_2:58636155-58636174 Msa0080360:CDS 40.0%
GCTGTTATTGTTGAATGGCA+GGG + chr1_2:58636304-58636323 Msa0080360:intron 40.0%
GGCTTCTTCACAATCAAAAC+AGG - chr1_2:58636377-58636396 None:intergenic 40.0%
AAGAAGCCAAAATCAACCAC+TGG + chr1_2:58636389-58636408 Msa0080360:CDS 40.0%
ATCTTAATTGTCTCCTCCAG+TGG - chr1_2:58636408-58636427 None:intergenic 40.0%
! GCTTGTCTTGTTCCTTCATA+AGG + chr1_2:58636527-58636546 Msa0080360:three_prime_UTR 40.0%
TCGGTTTCAGATAGATCACA+AGG - chr1_2:58635566-58635585 None:intergenic 40.0%
! AGAGCATTTATGCTCTCACA+TGG + chr1_2:58635662-58635681 Msa0080360:exon 40.0%
GAGGAGAATAAGGTGATCTT+TGG - chr1_2:58635715-58635734 None:intergenic 40.0%
AAGGCAGAATAAACAACACG+AGG - chr1_2:58635750-58635769 None:intergenic 40.0%
CCGTTATGTCAGAAGAGAAT+AGG - chr1_2:58635878-58635897 None:intergenic 40.0%
! TTGTTGGCTATACTTCTCCA+TGG - chr1_2:58635904-58635923 None:intergenic 40.0%
CTGTCAGGCTGTTCAAAAAA+TGG + chr1_2:58636134-58636153 Msa0080360:CDS 40.0%
!! GGGTGTTGATATCTTGGTTA+TGG + chr1_2:58636155-58636174 Msa0080360:CDS 40.0%
GCTGTTATTGTTGAATGGCA+GGG + chr1_2:58636304-58636323 Msa0080360:intron 40.0%
GGCTTCTTCACAATCAAAAC+AGG - chr1_2:58636377-58636396 None:intergenic 40.0%
AAGAAGCCAAAATCAACCAC+TGG + chr1_2:58636389-58636408 Msa0080360:CDS 40.0%
ATCTTAATTGTCTCCTCCAG+TGG - chr1_2:58636408-58636427 None:intergenic 40.0%
! GCTTGTCTTGTTCCTTCATA+AGG + chr1_2:58636527-58636546 Msa0080360:three_prime_UTR 40.0%
ATCAAGCAGTGTGAAATGGC+TGG + chr1_2:58635589-58635608 Msa0080360:five_prime_UTR 45.0%
GCAGAATAAACAACACGAGG+AGG - chr1_2:58635747-58635766 None:intergenic 45.0%
! TATTCTGCCTTTGATGGCAC+AGG + chr1_2:58635759-58635778 Msa0080360:CDS 45.0%
TTCTGACATAACGGCAACCA+TGG + chr1_2:58635884-58635903 Msa0080360:CDS 45.0%
ATATGGTTTAGGTGGAGACG+AGG + chr1_2:58636082-58636101 Msa0080360:intron 45.0%
GATAGAGAATGGTGACCCTA+GGG + chr1_2:58636104-58636123 Msa0080360:CDS 45.0%
CCTGACAGATTACATCCCTA+GGG - chr1_2:58636122-58636141 None:intergenic 45.0%
ATCTTGGTTATGGGAAGCCA+CGG + chr1_2:58636165-58636184 Msa0080360:CDS 45.0%
GGCTGTTATTGTTGAATGGC+AGG + chr1_2:58636303-58636322 Msa0080360:intron 45.0%
ACTTCACATTCTGTGCACAG+TGG - chr1_2:58636352-58636371 None:intergenic 45.0%
AAGCCAAAATCAACCACTGG+AGG + chr1_2:58636392-58636411 Msa0080360:CDS 45.0%
!! TCTCCTCCAGTGGTTGATTT+TGG - chr1_2:58636398-58636417 None:intergenic 45.0%
ACAAGACAAGCACAACCCAA+AGG - chr1_2:58636518-58636537 None:intergenic 45.0%
ATCAAGCAGTGTGAAATGGC+TGG + chr1_2:58635589-58635608 Msa0080360:five_prime_UTR 45.0%
GCAGAATAAACAACACGAGG+AGG - chr1_2:58635747-58635766 None:intergenic 45.0%
! TATTCTGCCTTTGATGGCAC+AGG + chr1_2:58635759-58635778 Msa0080360:CDS 45.0%
TTCTGACATAACGGCAACCA+TGG + chr1_2:58635884-58635903 Msa0080360:CDS 45.0%
ATATGGTTTAGGTGGAGACG+AGG + chr1_2:58636082-58636101 Msa0080360:intron 45.0%
GATAGAGAATGGTGACCCTA+GGG + chr1_2:58636104-58636123 Msa0080360:CDS 45.0%
CCTGACAGATTACATCCCTA+GGG - chr1_2:58636122-58636141 None:intergenic 45.0%
ATCTTGGTTATGGGAAGCCA+CGG + chr1_2:58636165-58636184 Msa0080360:CDS 45.0%
GGCTGTTATTGTTGAATGGC+AGG + chr1_2:58636303-58636322 Msa0080360:intron 45.0%
ACTTCACATTCTGTGCACAG+TGG - chr1_2:58636352-58636371 None:intergenic 45.0%
AAGCCAAAATCAACCACTGG+AGG + chr1_2:58636392-58636411 Msa0080360:CDS 45.0%
!! TCTCCTCCAGTGGTTGATTT+TGG - chr1_2:58636398-58636417 None:intergenic 45.0%
ACAAGACAAGCACAACCCAA+AGG - chr1_2:58636518-58636537 None:intergenic 45.0%
CACATGGTGCCTCAAGAACT+TGG + chr1_2:58635678-58635697 Msa0080360:exon 50.0%
CACGAGGAGGCTTAACATAG+AGG - chr1_2:58635734-58635753 None:intergenic 50.0%
GTGGAGACGAGGATAGAGAA+TGG + chr1_2:58636093-58636112 Msa0080360:CDS 50.0%
GGATAGAGAATGGTGACCCT+AGG + chr1_2:58636103-58636122 Msa0080360:CDS 50.0%
CCCTAGGGATGTAATCTGTC+AGG + chr1_2:58636119-58636138 Msa0080360:CDS 50.0%
GCCTGACAGATTACATCCCT+AGG - chr1_2:58636123-58636142 None:intergenic 50.0%
! TCTTGATGACACCATAGCCG+TGG - chr1_2:58636185-58636204 None:intergenic 50.0%
!! ACGGCTATGGTGTCATCAAG+AGG + chr1_2:58636184-58636203 Msa0080360:CDS 50.0%
TTGAATGGCAGGGCTTTCCT+TGG + chr1_2:58636314-58636333 Msa0080360:intron 50.0%
AGTGGTTGCTCACACTTCCA+AGG - chr1_2:58636334-58636353 None:intergenic 50.0%
CACATGGTGCCTCAAGAACT+TGG + chr1_2:58635678-58635697 Msa0080360:exon 50.0%
CACGAGGAGGCTTAACATAG+AGG - chr1_2:58635734-58635753 None:intergenic 50.0%
GTGGAGACGAGGATAGAGAA+TGG + chr1_2:58636093-58636112 Msa0080360:CDS 50.0%
GGATAGAGAATGGTGACCCT+AGG + chr1_2:58636103-58636122 Msa0080360:CDS 50.0%
CCCTAGGGATGTAATCTGTC+AGG + chr1_2:58636119-58636138 Msa0080360:CDS 50.0%
GCCTGACAGATTACATCCCT+AGG - chr1_2:58636123-58636142 None:intergenic 50.0%
! TCTTGATGACACCATAGCCG+TGG - chr1_2:58636185-58636204 None:intergenic 50.0%
!! ACGGCTATGGTGTCATCAAG+AGG + chr1_2:58636184-58636203 Msa0080360:CDS 50.0%
TTGAATGGCAGGGCTTTCCT+TGG + chr1_2:58636314-58636333 Msa0080360:intron 50.0%
AGTGGTTGCTCACACTTCCA+AGG - chr1_2:58636334-58636353 None:intergenic 50.0%
GTTATGGGAAGCCACGGCTA+TGG + chr1_2:58636171-58636190 Msa0080360:CDS 55.0%
GTTATGGGAAGCCACGGCTA+TGG + chr1_2:58636171-58636190 Msa0080360:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 58635457 58636586 58635457 ID=Msa0080360;Name=Msa0080360
chr1_2 mRNA 58635457 58636586 58635457 ID=Msa0080360-mRNA-1;Parent=Msa0080360;Name=Msa0080360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=224|1|1|1|1|1|4|162|139
chr1_2 exon 58635457 58635780 58635457 ID=Msa0080360-mRNA-1:exon:18815;Parent=Msa0080360-mRNA-1
chr1_2 exon 58635871 58635977 58635871 ID=Msa0080360-mRNA-1:exon:18816;Parent=Msa0080360-mRNA-1
chr1_2 exon 58636093 58636205 58636093 ID=Msa0080360-mRNA-1:exon:18817;Parent=Msa0080360-mRNA-1
chr1_2 exon 58636325 58636586 58636325 ID=Msa0080360-mRNA-1:exon:18818;Parent=Msa0080360-mRNA-1
chr1_2 five_prime_UTR 58635457 58635680 58635457 ID=Msa0080360-mRNA-1:five_prime_utr;Parent=Msa0080360-mRNA-1
chr1_2 CDS 58635681 58635780 58635681 ID=Msa0080360-mRNA-1:cds;Parent=Msa0080360-mRNA-1
chr1_2 CDS 58635871 58635977 58635871 ID=Msa0080360-mRNA-1:cds;Parent=Msa0080360-mRNA-1
chr1_2 CDS 58636093 58636205 58636093 ID=Msa0080360-mRNA-1:cds;Parent=Msa0080360-mRNA-1
chr1_2 CDS 58636325 58636424 58636325 ID=Msa0080360-mRNA-1:cds;Parent=Msa0080360-mRNA-1
chr1_2 three_prime_UTR 58636425 58636586 58636425 ID=Msa0080360-mRNA-1:three_prime_utr;Parent=Msa0080360-mRNA-1
Gene Sequence

>Msa0080360

ATGGTGCCTCAAGAACTTGGTTTTCAAAATTCCAAAGATCACCTTATTCTCCTCTATGTTAAGCCTCCTCGTGTTGTTTATTCTGCCTTTGATGGCACAGGATACCTATTCTCTTCTGACATAACGGCAACCATGGAGAAGTATAGCCAACAAGTTGCTGATTGTGTTTTGGAGAAAGCCAAGATAGTCTGTAATGATGTGCAAAATGTGGAGACGAGGATAGAGAATGGTGACCCTAGGGATGTAATCTGTCAGGCTGTTCAAAAAATGGGTGTTGATATCTTGGTTATGGGAAGCCACGGCTATGGTGTCATCAAGAGGGCTTTCCTTGGAAGTGTGAGCAACCACTGTGCACAGAATGTGAAGTGCCCTGTTTTGATTGTGAAGAAGCCAAAATCAACCACTGGAGGAGACAATTAA
Protein sequence

>Msa0080360

MVPQELGFQNSKDHLILLYVKPPRVVYSAFDGTGYLFSSDITATMEKYSQQVADCVLEKAKIVCNDVQNVETRIENGDPRDVICQAVQKMGVDILVMGSHGYGVIKRAFLGSVSNHCAQNVKCPVLIVKKPKSTTGGDN*