Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131800 | sp|Q8LGG8|USPAL_ARATH | 31.944 | 144 | 93 | 4 | 24 | 164 | 30 | 171 | 1.54e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131800 | G7I9H1 | 100.000 | 165 | 0 | 0 | 1 | 165 | 1 | 165 | 1.11e-119 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0080290 | Msa0131800 | 0.853205 | 2.786624e-61 | -8.615850e-47 |
| Msa0080360 | Msa0131800 | 0.862143 | 6.244195e-64 | -8.615850e-47 |
| Msa0131800 | Msa0173260 | 0.930138 | 2.533916e-93 | -8.615850e-47 |
| Msa0131800 | Msa0235020 | 0.815892 | 7.325416e-52 | -8.615850e-47 |
| Msa0131800 | Msa0261490 | 0.805240 | 1.468861e-49 | -8.615850e-47 |
| Msa0131800 | Msa0273420 | 0.811939 | 5.446186e-51 | -8.615850e-47 |
| Msa0131800 | Msa0375500 | 0.803906 | 2.787502e-49 | -8.615850e-47 |
| Msa0131800 | Msa0384220 | 0.833304 | 5.759412e-56 | -8.615850e-47 |
| Msa0131800 | Msa0424300 | 0.807305 | 5.393095e-50 | -8.615850e-47 |
| Msa0131800 | Msa0434890 | 0.871367 | 7.213927e-67 | -8.615850e-47 |
| Msa0131800 | Msa0471210 | 0.812080 | 5.075612e-51 | -8.615850e-47 |
| Msa0131800 | Msa0515930 | 0.805257 | 1.456448e-49 | -8.615850e-47 |
| Msa0131800 | Msa0709820 | 0.868612 | 5.736790e-66 | -8.615850e-47 |
| Msa0131800 | Msa0712440 | -0.804977 | 1.667200e-49 | -8.615850e-47 |
| Msa0131800 | Msa0747500 | 0.804885 | 1.742384e-49 | -8.615850e-47 |
| Msa0131800 | Msa0896990 | 0.801954 | 7.056646e-49 | -8.615850e-47 |
| Msa0131800 | Msa1257170 | 0.805929 | 1.053007e-49 | -8.615850e-47 |
| Msa0131800 | Msa1258600 | 0.811000 | 8.710759e-51 | -8.615850e-47 |
| Msa0131800 | Msa1400940 | 0.816552 | 5.215561e-52 | -8.615850e-47 |
| Msa0131800 | Msa1402000 | 0.889292 | 2.759814e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131800 | MtrunA17_Chr1g0192651 | 100.000 | 165 | 0 | 0 | 1 | 165 | 1 | 165 | 2.14e-123 | 343 |
| Msa0131800 | MtrunA17_Chr1g0194801 | 53.247 | 154 | 66 | 3 | 9 | 157 | 6 | 158 | 3.20e-56 | 174 |
| Msa0131800 | MtrunA17_Chr1g0176311 | 40.741 | 162 | 83 | 3 | 10 | 158 | 23 | 184 | 1.98e-34 | 119 |
| Msa0131800 | MtrunA17_Chr1g0176321 | 38.690 | 168 | 84 | 4 | 10 | 158 | 4 | 171 | 8.67e-33 | 114 |
| Msa0131800 | MtrunA17_Chr1g0195661 | 40.132 | 152 | 88 | 2 | 11 | 159 | 14 | 165 | 2.24e-32 | 113 |
| Msa0131800 | MtrunA17_Chr5g0427291 | 37.037 | 162 | 84 | 5 | 11 | 155 | 10 | 170 | 3.03e-30 | 108 |
| Msa0131800 | MtrunA17_Chr7g0269301 | 40.123 | 162 | 90 | 4 | 1 | 158 | 1 | 159 | 3.91e-27 | 100 |
| Msa0131800 | MtrunA17_Chr2g0323291 | 30.539 | 167 | 102 | 4 | 9 | 163 | 25 | 189 | 1.09e-21 | 87.4 |
| Msa0131800 | MtrunA17_Chr5g0433951 | 33.962 | 159 | 89 | 5 | 13 | 160 | 9 | 162 | 6.64e-19 | 79.0 |
| Msa0131800 | MtrunA17_Chr4g0001641 | 52.381 | 63 | 30 | 0 | 93 | 155 | 3 | 65 | 1.65e-18 | 75.1 |
| Msa0131800 | MtrunA17_Chr2g0294421 | 31.250 | 160 | 94 | 4 | 7 | 155 | 3 | 157 | 1.22e-17 | 75.5 |
| Msa0131800 | MtrunA17_Chr6g0450171 | 27.485 | 171 | 110 | 5 | 6 | 164 | 3 | 171 | 3.27e-17 | 74.7 |
| Msa0131800 | MtrunA17_Chr4g0008801 | 34.194 | 155 | 92 | 4 | 9 | 155 | 5 | 157 | 1.69e-16 | 72.4 |
| Msa0131800 | MtrunA17_Chr4g0032261 | 31.902 | 163 | 101 | 4 | 7 | 161 | 3 | 163 | 3.74e-14 | 66.2 |
| Msa0131800 | MtrunA17_Chr7g0240701 | 31.613 | 155 | 96 | 4 | 9 | 155 | 5 | 157 | 1.25e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131800 | AT3G62550.1 | 50.993 | 151 | 71 | 1 | 9 | 156 | 7 | 157 | 5.83e-52 | 163 |
| Msa0131800 | AT3G11930.2 | 38.922 | 167 | 88 | 4 | 9 | 161 | 33 | 199 | 1.87e-34 | 120 |
| Msa0131800 | AT3G11930.1 | 39.157 | 166 | 88 | 4 | 9 | 161 | 33 | 198 | 2.11e-34 | 120 |
| Msa0131800 | AT3G11930.4 | 38.690 | 168 | 88 | 5 | 9 | 161 | 33 | 200 | 1.02e-33 | 118 |
| Msa0131800 | AT3G58450.1 | 38.650 | 163 | 88 | 4 | 11 | 161 | 32 | 194 | 7.92e-32 | 113 |
| Msa0131800 | AT3G58450.2 | 39.375 | 160 | 84 | 3 | 11 | 161 | 32 | 187 | 4.05e-31 | 111 |
| Msa0131800 | AT1G09740.2 | 37.654 | 162 | 91 | 3 | 11 | 162 | 10 | 171 | 1.25e-30 | 109 |
| Msa0131800 | AT1G09740.1 | 37.654 | 162 | 91 | 3 | 11 | 162 | 10 | 171 | 1.25e-30 | 109 |
| Msa0131800 | AT2G47710.1 | 36.875 | 160 | 92 | 4 | 5 | 158 | 3 | 159 | 6.59e-30 | 107 |
| Msa0131800 | AT3G11930.3 | 33.679 | 193 | 88 | 5 | 9 | 161 | 33 | 225 | 3.62e-28 | 104 |
| Msa0131800 | AT1G68300.1 | 36.242 | 149 | 92 | 3 | 9 | 155 | 10 | 157 | 5.46e-27 | 99.8 |
| Msa0131800 | AT3G17020.1 | 36.025 | 161 | 84 | 6 | 8 | 155 | 6 | 160 | 3.01e-20 | 82.4 |
| Msa0131800 | AT1G11360.2 | 29.586 | 169 | 104 | 5 | 9 | 165 | 38 | 203 | 2.38e-18 | 79.3 |
| Msa0131800 | AT1G11360.1 | 29.586 | 169 | 104 | 5 | 9 | 165 | 38 | 203 | 2.38e-18 | 79.3 |
| Msa0131800 | AT1G11360.4 | 29.586 | 169 | 104 | 5 | 9 | 165 | 38 | 203 | 2.38e-18 | 79.3 |
| Msa0131800 | AT1G11360.3 | 29.586 | 169 | 104 | 5 | 9 | 165 | 38 | 203 | 2.38e-18 | 79.3 |
| Msa0131800 | AT3G01520.1 | 31.944 | 144 | 93 | 4 | 24 | 164 | 30 | 171 | 1.57e-17 | 75.9 |
| Msa0131800 | AT5G14680.1 | 29.940 | 167 | 103 | 5 | 10 | 164 | 7 | 171 | 8.98e-17 | 73.9 |
| Msa0131800 | AT3G03270.2 | 30.818 | 159 | 94 | 5 | 8 | 155 | 4 | 157 | 2.04e-15 | 69.7 |
| Msa0131800 | AT3G53990.1 | 28.302 | 159 | 96 | 4 | 9 | 155 | 5 | 157 | 3.19e-12 | 61.6 |
| Msa0131800 | AT3G25930.1 | 29.012 | 162 | 87 | 8 | 9 | 156 | 2 | 149 | 3.24e-11 | 58.5 |
Find 54 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTCCAGTGGTTGATTT+TGG | 0.145041 | 1_3:-62766882 | None:intergenic |
| TTTCAAATATTAAATGATAA+AGG | 0.289136 | 1_3:+62767045 | Msa0131800:three_prime_UTR |
| TTTCACACTGCTTGATAATT+CGG | 0.344578 | 1_3:-62766061 | None:intergenic |
| GGCTTCTTCACAATCAAAAC+AGG | 0.346785 | 1_3:-62766861 | None:intergenic |
| GGGTGTTGATATCTTGGTTA+TGG | 0.361677 | 1_3:+62766642 | Msa0131800:CDS |
| GCTTAACATAGAGGAGAATA+AGG | 0.362554 | 1_3:-62766202 | None:intergenic |
| GAGGAGAATAAGGTGATCTT+TGG | 0.363644 | 1_3:-62766192 | None:intergenic |
| TTGCTATGAACATGTCCTTT+GGG | 0.364433 | 1_3:+62766986 | Msa0131800:three_prime_UTR |
| ACAAGTTGCTGATTGTGTTT+TGG | 0.367067 | 1_3:+62766404 | Msa0131800:CDS |
| ATTGCTATGAACATGTCCTT+TGG | 0.383983 | 1_3:+62766985 | Msa0131800:three_prime_UTR |
| GCGTGTCTTGTTCCTTCATA+AGG | 0.398759 | 1_3:+62767013 | Msa0131800:three_prime_UTR |
| GTTGTTTATTCTGCCTTTGA+CGG | 0.402294 | 1_3:+62766233 | Msa0131800:CDS |
| CACATGGTGCCTCAAGAACT+TGG | 0.402802 | 1_3:+62766157 | Msa0131800:CDS |
| AAAAGATATATTCCTTATGA+AGG | 0.407539 | 1_3:-62767025 | None:intergenic |
| GACATCATTACAGACTATCT+TGG | 0.412460 | 1_3:-62766433 | None:intergenic |
| GGTGTTGATATCTTGGTTAT+GGG | 0.433422 | 1_3:+62766643 | Msa0131800:CDS |
| CCCTAGGGATGTAATCTGTC+AGG | 0.458933 | 1_3:+62766606 | Msa0131800:CDS |
| CCGTAATGTCTGAAGAGAAC+AGG | 0.471029 | 1_3:-62766359 | None:intergenic |
| TATTCTGCCTTTGACGGCAC+AGG | 0.486830 | 1_3:+62766239 | Msa0131800:CDS |
| TTGAATGGCAGGGCTTTCCT+TGG | 0.488782 | 1_3:+62766801 | Msa0131800:intron |
| ATCTTAATTGTCTCCTCCAG+TGG | 0.492223 | 1_3:-62766892 | None:intergenic |
| CCTGTTCTCTTCAGACATTA+CGG | 0.496003 | 1_3:+62766359 | Msa0131800:CDS |
| AATTATCAAGCAGTGTGAAA+TGG | 0.497338 | 1_3:+62766064 | Msa0131800:exon |
| ATGGCTGGCATAACAGAAAA+CGG | 0.516539 | 1_3:+62766083 | Msa0131800:CDS |
| GTGGAGACGAGGATAGAGAA+TGG | 0.517274 | 1_3:+62766580 | Msa0131800:CDS |
| GTTATGGGAAGCCACGGCTA+TGG | 0.518096 | 1_3:+62766658 | Msa0131800:CDS |
| GGATAGAGAATGGTGACCCT+AGG | 0.527492 | 1_3:+62766590 | Msa0131800:CDS |
| TTGTTGACTATACTTCTCCA+TGG | 0.541693 | 1_3:-62766385 | None:intergenic |
| ATCAAGCAGTGTGAAATGGC+TGG | 0.555141 | 1_3:+62766068 | Msa0131800:exon |
| AAATATTCAGTAGTTTGTAG+AGG | 0.555908 | 1_3:-62765994 | None:intergenic |
| ATCTTGGTTATGGGAAGCCA+CGG | 0.562584 | 1_3:+62766652 | Msa0131800:CDS |
| AGAAAACGGAAGAAGAATCA+TGG | 0.569970 | 1_3:+62766097 | Msa0131800:CDS |
| TTAATTACCTGTGCCGTCAA+AGG | 0.575998 | 1_3:-62766246 | None:intergenic |
| CACGAGGAGGCTTAACATAG+AGG | 0.577003 | 1_3:-62766211 | None:intergenic |
| AGTGGTTGCTCACACTTCCA+AGG | 0.579050 | 1_3:-62766818 | None:intergenic |
| GATAGAGAATGGTGACCCTA+GGG | 0.580628 | 1_3:+62766591 | Msa0131800:CDS |
| ATTGTGCTTCAAATTATGAT+CGG | 0.581201 | 1_3:-62765956 | None:intergenic |
| TTCAGACATTACGGCAACCA+TGG | 0.581365 | 1_3:+62766368 | Msa0131800:CDS |
| AAGAAGCCAAAATCAACCAC+TGG | 0.584975 | 1_3:+62766876 | Msa0131800:CDS |
| GCCTGACAGATTACATCCCT+AGG | 0.585000 | 1_3:-62766607 | None:intergenic |
| ATCATGGTAGCTATTGATGA+AGG | 0.586206 | 1_3:+62766113 | Msa0131800:CDS |
| ACAAGACACGCACAACCCAA+AGG | 0.602143 | 1_3:-62767001 | None:intergenic |
| TCGGTTTGAGATAGATCACA+AGG | 0.631463 | 1_3:-62766042 | None:intergenic |
| ACGGCTATGGTGTCATCAAG+AGG | 0.638531 | 1_3:+62766671 | Msa0131800:CDS |
| AAGCCAAAATCAACCACTGG+AGG | 0.644827 | 1_3:+62766879 | Msa0131800:CDS |
| TGTTCATAGCAATAGCAACA+AGG | 0.651321 | 1_3:-62766975 | None:intergenic |
| GCTTCTTCACAATCAAAACA+GGG | 0.652447 | 1_3:-62766860 | None:intergenic |
| ATATGGTTTAGGTGGAGACG+AGG | 0.658827 | 1_3:+62766569 | Msa0131800:intron |
| CCTGACAGATTACATCCCTA+GGG | 0.659449 | 1_3:-62766606 | None:intergenic |
| AGAGCATTTATGCTCTCACA+TGG | 0.669047 | 1_3:+62766141 | Msa0131800:CDS |
| TCTTGATGACACCATAGCCG+TGG | 0.679887 | 1_3:-62766669 | None:intergenic |
| ACTTCACATTCTGTGCACAG+TGG | 0.689187 | 1_3:-62766836 | None:intergenic |
| GCAGAATAAACAACACGAGG+AGG | 0.692643 | 1_3:-62766224 | None:intergenic |
| AAGGCAGAATAAACAACACG+AGG | 0.721470 | 1_3:-62766227 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAAATATTAAATGATAA+AGG | + | chr1_3:62767045-62767064 | Msa0131800:three_prime_UTR | 10.0% |
| !! | TTTCAAATATTAAATGATAA+AGG | + | chr1_3:62767045-62767064 | Msa0131800:three_prime_UTR | 10.0% |
| !!! | ATATATGTATACTTACATTT+TGG | - | chr1_3:62766458-62766477 | None:intergenic | 15.0% |
| !! | ATTAACTATAGATAAAAATG+AGG | - | chr1_3:62766529-62766548 | None:intergenic | 15.0% |
| !! | TTAATAATTAATCTGTGATA+TGG | + | chr1_3:62766552-62766571 | Msa0131800:intron | 15.0% |
| !! | TGTGAATTGTAAATTTAATT+TGG | + | chr1_3:62766763-62766782 | Msa0131800:intron | 15.0% |
| !! | GAAAAGAAAAAAACAAAATA+AGG | - | chr1_3:62766933-62766952 | None:intergenic | 15.0% |
| !!! | ATATATGTATACTTACATTT+TGG | - | chr1_3:62766458-62766477 | None:intergenic | 15.0% |
| !! | ATTAACTATAGATAAAAATG+AGG | - | chr1_3:62766529-62766548 | None:intergenic | 15.0% |
| !! | TTAATAATTAATCTGTGATA+TGG | + | chr1_3:62766552-62766571 | Msa0131800:intron | 15.0% |
| !! | TGTGAATTGTAAATTTAATT+TGG | + | chr1_3:62766763-62766782 | Msa0131800:intron | 15.0% |
| !! | GAAAAGAAAAAAACAAAATA+AGG | - | chr1_3:62766933-62766952 | None:intergenic | 15.0% |
| !! | GGTAATTAAACAAAATTTCA+TGG | + | chr1_3:62766260-62766279 | Msa0131800:intron | 20.0% |
| !!! | TTGTAAATTTAATTTGGTTC+TGG | + | chr1_3:62766769-62766788 | Msa0131800:intron | 20.0% |
| !! | AAAAGATATATTCCTTATGA+AGG | - | chr1_3:62767028-62767047 | None:intergenic | 20.0% |
| !! | GGTAATTAAACAAAATTTCA+TGG | + | chr1_3:62766260-62766279 | Msa0131800:intron | 20.0% |
| !!! | TTGTAAATTTAATTTGGTTC+TGG | + | chr1_3:62766769-62766788 | Msa0131800:intron | 20.0% |
| !! | AAAAGATATATTCCTTATGA+AGG | - | chr1_3:62767028-62767047 | None:intergenic | 20.0% |
| ! | ATTGTGCTTCAAATTATGAT+CGG | - | chr1_3:62765959-62765978 | None:intergenic | 25.0% |
| !! | AAATATTCAGTAGTTTGTAG+AGG | - | chr1_3:62765997-62766016 | None:intergenic | 25.0% |
| ! | GTGTATCATATATATGTTTC+AGG | + | chr1_3:62766333-62766352 | Msa0131800:intron | 25.0% |
| ! | ACTATAGATAAAAATGAGGA+GGG | - | chr1_3:62766525-62766544 | None:intergenic | 25.0% |
| ! | AACTATAGATAAAAATGAGG+AGG | - | chr1_3:62766526-62766545 | None:intergenic | 25.0% |
| ! | ATTAATCTGTGATATGGTTT+AGG | + | chr1_3:62766558-62766577 | Msa0131800:intron | 25.0% |
| !! | ATTTTTGTTAGAATGAGCTA+AGG | + | chr1_3:62766739-62766758 | Msa0131800:intron | 25.0% |
| ! | ATTGTGCTTCAAATTATGAT+CGG | - | chr1_3:62765959-62765978 | None:intergenic | 25.0% |
| !! | AAATATTCAGTAGTTTGTAG+AGG | - | chr1_3:62765997-62766016 | None:intergenic | 25.0% |
| ! | GTGTATCATATATATGTTTC+AGG | + | chr1_3:62766333-62766352 | Msa0131800:intron | 25.0% |
| ! | ACTATAGATAAAAATGAGGA+GGG | - | chr1_3:62766525-62766544 | None:intergenic | 25.0% |
| ! | AACTATAGATAAAAATGAGG+AGG | - | chr1_3:62766526-62766545 | None:intergenic | 25.0% |
| ! | ATTAATCTGTGATATGGTTT+AGG | + | chr1_3:62766558-62766577 | Msa0131800:intron | 25.0% |
| !! | ATTTTTGTTAGAATGAGCTA+AGG | + | chr1_3:62766739-62766758 | Msa0131800:intron | 25.0% |
| ! | TTTCACACTGCTTGATAATT+CGG | - | chr1_3:62766064-62766083 | None:intergenic | 30.0% |
| AATTATCAAGCAGTGTGAAA+TGG | + | chr1_3:62766064-62766083 | Msa0131800:exon | 30.0% | |
| TTTGAAAAACCAAGTTCTTG+AGG | - | chr1_3:62766169-62766188 | None:intergenic | 30.0% | |
| !! | AAAAATGGGTGTTGATATCT+TGG | + | chr1_3:62766636-62766655 | Msa0131800:CDS | 30.0% |
| ! | TTTCACACTGCTTGATAATT+CGG | - | chr1_3:62766064-62766083 | None:intergenic | 30.0% |
| AATTATCAAGCAGTGTGAAA+TGG | + | chr1_3:62766064-62766083 | Msa0131800:exon | 30.0% | |
| TTTGAAAAACCAAGTTCTTG+AGG | - | chr1_3:62766169-62766188 | None:intergenic | 30.0% | |
| !! | AAAAATGGGTGTTGATATCT+TGG | + | chr1_3:62766636-62766655 | Msa0131800:CDS | 30.0% |
| AGAAAACGGAAGAAGAATCA+TGG | + | chr1_3:62766097-62766116 | Msa0131800:CDS | 35.0% | |
| ATCATGGTAGCTATTGATGA+AGG | + | chr1_3:62766113-62766132 | Msa0131800:CDS | 35.0% | |
| GCTTAACATAGAGGAGAATA+AGG | - | chr1_3:62766205-62766224 | None:intergenic | 35.0% | |
| GTTGTTTATTCTGCCTTTGA+CGG | + | chr1_3:62766233-62766252 | Msa0131800:CDS | 35.0% | |
| ! | TTGTTGACTATACTTCTCCA+TGG | - | chr1_3:62766388-62766407 | None:intergenic | 35.0% |
| !! | ACAAGTTGCTGATTGTGTTT+TGG | + | chr1_3:62766404-62766423 | Msa0131800:CDS | 35.0% |
| GACATCATTACAGACTATCT+TGG | - | chr1_3:62766436-62766455 | None:intergenic | 35.0% | |
| AATCTGTGATATGGTTTAGG+TGG | + | chr1_3:62766561-62766580 | Msa0131800:intron | 35.0% | |
| TGTCAGGCTGTTCAAAAAAT+GGG | + | chr1_3:62766622-62766641 | Msa0131800:CDS | 35.0% | |
| !! | GGTGTTGATATCTTGGTTAT+GGG | + | chr1_3:62766643-62766662 | Msa0131800:CDS | 35.0% |
| ! | TTCTGGCTGTTATTGTTGAA+TGG | + | chr1_3:62766786-62766805 | Msa0131800:intron | 35.0% |
| GCTTCTTCACAATCAAAACA+GGG | - | chr1_3:62766863-62766882 | None:intergenic | 35.0% | |
| TGTTCATAGCAATAGCAACA+AGG | - | chr1_3:62766978-62766997 | None:intergenic | 35.0% | |
| ATTGCTATGAACATGTCCTT+TGG | + | chr1_3:62766985-62767004 | Msa0131800:three_prime_UTR | 35.0% | |
| TTGCTATGAACATGTCCTTT+GGG | + | chr1_3:62766986-62767005 | Msa0131800:three_prime_UTR | 35.0% | |
| AGAAAACGGAAGAAGAATCA+TGG | + | chr1_3:62766097-62766116 | Msa0131800:CDS | 35.0% | |
| ATCATGGTAGCTATTGATGA+AGG | + | chr1_3:62766113-62766132 | Msa0131800:CDS | 35.0% | |
| GCTTAACATAGAGGAGAATA+AGG | - | chr1_3:62766205-62766224 | None:intergenic | 35.0% | |
| GTTGTTTATTCTGCCTTTGA+CGG | + | chr1_3:62766233-62766252 | Msa0131800:CDS | 35.0% | |
| ! | TTGTTGACTATACTTCTCCA+TGG | - | chr1_3:62766388-62766407 | None:intergenic | 35.0% |
| !! | ACAAGTTGCTGATTGTGTTT+TGG | + | chr1_3:62766404-62766423 | Msa0131800:CDS | 35.0% |
| GACATCATTACAGACTATCT+TGG | - | chr1_3:62766436-62766455 | None:intergenic | 35.0% | |
| AATCTGTGATATGGTTTAGG+TGG | + | chr1_3:62766561-62766580 | Msa0131800:intron | 35.0% | |
| TGTCAGGCTGTTCAAAAAAT+GGG | + | chr1_3:62766622-62766641 | Msa0131800:CDS | 35.0% | |
| !! | GGTGTTGATATCTTGGTTAT+GGG | + | chr1_3:62766643-62766662 | Msa0131800:CDS | 35.0% |
| ! | TTCTGGCTGTTATTGTTGAA+TGG | + | chr1_3:62766786-62766805 | Msa0131800:intron | 35.0% |
| GCTTCTTCACAATCAAAACA+GGG | - | chr1_3:62766863-62766882 | None:intergenic | 35.0% | |
| TGTTCATAGCAATAGCAACA+AGG | - | chr1_3:62766978-62766997 | None:intergenic | 35.0% | |
| ATTGCTATGAACATGTCCTT+TGG | + | chr1_3:62766985-62767004 | Msa0131800:three_prime_UTR | 35.0% | |
| TTGCTATGAACATGTCCTTT+GGG | + | chr1_3:62766986-62767005 | Msa0131800:three_prime_UTR | 35.0% | |
| ! | TCGGTTTGAGATAGATCACA+AGG | - | chr1_3:62766045-62766064 | None:intergenic | 40.0% |
| ATGGCTGGCATAACAGAAAA+CGG | + | chr1_3:62766083-62766102 | Msa0131800:CDS | 40.0% | |
| ! | AGAGCATTTATGCTCTCACA+TGG | + | chr1_3:62766141-62766160 | Msa0131800:CDS | 40.0% |
| GAGGAGAATAAGGTGATCTT+TGG | - | chr1_3:62766195-62766214 | None:intergenic | 40.0% | |
| AAGGCAGAATAAACAACACG+AGG | - | chr1_3:62766230-62766249 | None:intergenic | 40.0% | |
| TTAATTACCTGTGCCGTCAA+AGG | - | chr1_3:62766249-62766268 | None:intergenic | 40.0% | |
| CCTGTTCTCTTCAGACATTA+CGG | + | chr1_3:62766359-62766378 | Msa0131800:CDS | 40.0% | |
| CTGTCAGGCTGTTCAAAAAA+TGG | + | chr1_3:62766621-62766640 | Msa0131800:CDS | 40.0% | |
| !! | GGGTGTTGATATCTTGGTTA+TGG | + | chr1_3:62766642-62766661 | Msa0131800:CDS | 40.0% |
| GCTGTTATTGTTGAATGGCA+GGG | + | chr1_3:62766791-62766810 | Msa0131800:intron | 40.0% | |
| GGCTTCTTCACAATCAAAAC+AGG | - | chr1_3:62766864-62766883 | None:intergenic | 40.0% | |
| AAGAAGCCAAAATCAACCAC+TGG | + | chr1_3:62766876-62766895 | Msa0131800:CDS | 40.0% | |
| ATCTTAATTGTCTCCTCCAG+TGG | - | chr1_3:62766895-62766914 | None:intergenic | 40.0% | |
| ! | TCGGTTTGAGATAGATCACA+AGG | - | chr1_3:62766045-62766064 | None:intergenic | 40.0% |
| ATGGCTGGCATAACAGAAAA+CGG | + | chr1_3:62766083-62766102 | Msa0131800:CDS | 40.0% | |
| ! | AGAGCATTTATGCTCTCACA+TGG | + | chr1_3:62766141-62766160 | Msa0131800:CDS | 40.0% |
| GAGGAGAATAAGGTGATCTT+TGG | - | chr1_3:62766195-62766214 | None:intergenic | 40.0% | |
| AAGGCAGAATAAACAACACG+AGG | - | chr1_3:62766230-62766249 | None:intergenic | 40.0% | |
| TTAATTACCTGTGCCGTCAA+AGG | - | chr1_3:62766249-62766268 | None:intergenic | 40.0% | |
| CCTGTTCTCTTCAGACATTA+CGG | + | chr1_3:62766359-62766378 | Msa0131800:CDS | 40.0% | |
| CTGTCAGGCTGTTCAAAAAA+TGG | + | chr1_3:62766621-62766640 | Msa0131800:CDS | 40.0% | |
| !! | GGGTGTTGATATCTTGGTTA+TGG | + | chr1_3:62766642-62766661 | Msa0131800:CDS | 40.0% |
| GCTGTTATTGTTGAATGGCA+GGG | + | chr1_3:62766791-62766810 | Msa0131800:intron | 40.0% | |
| GGCTTCTTCACAATCAAAAC+AGG | - | chr1_3:62766864-62766883 | None:intergenic | 40.0% | |
| AAGAAGCCAAAATCAACCAC+TGG | + | chr1_3:62766876-62766895 | Msa0131800:CDS | 40.0% | |
| ATCTTAATTGTCTCCTCCAG+TGG | - | chr1_3:62766895-62766914 | None:intergenic | 40.0% | |
| ATCAAGCAGTGTGAAATGGC+TGG | + | chr1_3:62766068-62766087 | Msa0131800:exon | 45.0% | |
| GCAGAATAAACAACACGAGG+AGG | - | chr1_3:62766227-62766246 | None:intergenic | 45.0% | |
| CCGTAATGTCTGAAGAGAAC+AGG | - | chr1_3:62766362-62766381 | None:intergenic | 45.0% | |
| TTCAGACATTACGGCAACCA+TGG | + | chr1_3:62766368-62766387 | Msa0131800:CDS | 45.0% | |
| ATATGGTTTAGGTGGAGACG+AGG | + | chr1_3:62766569-62766588 | Msa0131800:intron | 45.0% | |
| GATAGAGAATGGTGACCCTA+GGG | + | chr1_3:62766591-62766610 | Msa0131800:CDS | 45.0% | |
| CCTGACAGATTACATCCCTA+GGG | - | chr1_3:62766609-62766628 | None:intergenic | 45.0% | |
| ATCTTGGTTATGGGAAGCCA+CGG | + | chr1_3:62766652-62766671 | Msa0131800:CDS | 45.0% | |
| GGCTGTTATTGTTGAATGGC+AGG | + | chr1_3:62766790-62766809 | Msa0131800:intron | 45.0% | |
| ACTTCACATTCTGTGCACAG+TGG | - | chr1_3:62766839-62766858 | None:intergenic | 45.0% | |
| AAGCCAAAATCAACCACTGG+AGG | + | chr1_3:62766879-62766898 | Msa0131800:CDS | 45.0% | |
| !! | TCTCCTCCAGTGGTTGATTT+TGG | - | chr1_3:62766885-62766904 | None:intergenic | 45.0% |
| ! | GCGTGTCTTGTTCCTTCATA+AGG | + | chr1_3:62767013-62767032 | Msa0131800:three_prime_UTR | 45.0% |
| ATCAAGCAGTGTGAAATGGC+TGG | + | chr1_3:62766068-62766087 | Msa0131800:exon | 45.0% | |
| GCAGAATAAACAACACGAGG+AGG | - | chr1_3:62766227-62766246 | None:intergenic | 45.0% | |
| CCGTAATGTCTGAAGAGAAC+AGG | - | chr1_3:62766362-62766381 | None:intergenic | 45.0% | |
| TTCAGACATTACGGCAACCA+TGG | + | chr1_3:62766368-62766387 | Msa0131800:CDS | 45.0% | |
| ATATGGTTTAGGTGGAGACG+AGG | + | chr1_3:62766569-62766588 | Msa0131800:intron | 45.0% | |
| GATAGAGAATGGTGACCCTA+GGG | + | chr1_3:62766591-62766610 | Msa0131800:CDS | 45.0% | |
| CCTGACAGATTACATCCCTA+GGG | - | chr1_3:62766609-62766628 | None:intergenic | 45.0% | |
| ATCTTGGTTATGGGAAGCCA+CGG | + | chr1_3:62766652-62766671 | Msa0131800:CDS | 45.0% | |
| GGCTGTTATTGTTGAATGGC+AGG | + | chr1_3:62766790-62766809 | Msa0131800:intron | 45.0% | |
| ACTTCACATTCTGTGCACAG+TGG | - | chr1_3:62766839-62766858 | None:intergenic | 45.0% | |
| AAGCCAAAATCAACCACTGG+AGG | + | chr1_3:62766879-62766898 | Msa0131800:CDS | 45.0% | |
| !! | TCTCCTCCAGTGGTTGATTT+TGG | - | chr1_3:62766885-62766904 | None:intergenic | 45.0% |
| ! | GCGTGTCTTGTTCCTTCATA+AGG | + | chr1_3:62767013-62767032 | Msa0131800:three_prime_UTR | 45.0% |
| CACATGGTGCCTCAAGAACT+TGG | + | chr1_3:62766157-62766176 | Msa0131800:CDS | 50.0% | |
| CACGAGGAGGCTTAACATAG+AGG | - | chr1_3:62766214-62766233 | None:intergenic | 50.0% | |
| TATTCTGCCTTTGACGGCAC+AGG | + | chr1_3:62766239-62766258 | Msa0131800:CDS | 50.0% | |
| GTGGAGACGAGGATAGAGAA+TGG | + | chr1_3:62766580-62766599 | Msa0131800:CDS | 50.0% | |
| GGATAGAGAATGGTGACCCT+AGG | + | chr1_3:62766590-62766609 | Msa0131800:CDS | 50.0% | |
| CCCTAGGGATGTAATCTGTC+AGG | + | chr1_3:62766606-62766625 | Msa0131800:CDS | 50.0% | |
| GCCTGACAGATTACATCCCT+AGG | - | chr1_3:62766610-62766629 | None:intergenic | 50.0% | |
| ! | TCTTGATGACACCATAGCCG+TGG | - | chr1_3:62766672-62766691 | None:intergenic | 50.0% |
| !! | ACGGCTATGGTGTCATCAAG+AGG | + | chr1_3:62766671-62766690 | Msa0131800:CDS | 50.0% |
| TTGAATGGCAGGGCTTTCCT+TGG | + | chr1_3:62766801-62766820 | Msa0131800:intron | 50.0% | |
| AGTGGTTGCTCACACTTCCA+AGG | - | chr1_3:62766821-62766840 | None:intergenic | 50.0% | |
| ACAAGACACGCACAACCCAA+AGG | - | chr1_3:62767004-62767023 | None:intergenic | 50.0% | |
| CACATGGTGCCTCAAGAACT+TGG | + | chr1_3:62766157-62766176 | Msa0131800:CDS | 50.0% | |
| CACGAGGAGGCTTAACATAG+AGG | - | chr1_3:62766214-62766233 | None:intergenic | 50.0% | |
| TATTCTGCCTTTGACGGCAC+AGG | + | chr1_3:62766239-62766258 | Msa0131800:CDS | 50.0% | |
| GTGGAGACGAGGATAGAGAA+TGG | + | chr1_3:62766580-62766599 | Msa0131800:CDS | 50.0% | |
| GGATAGAGAATGGTGACCCT+AGG | + | chr1_3:62766590-62766609 | Msa0131800:CDS | 50.0% | |
| CCCTAGGGATGTAATCTGTC+AGG | + | chr1_3:62766606-62766625 | Msa0131800:CDS | 50.0% | |
| GCCTGACAGATTACATCCCT+AGG | - | chr1_3:62766610-62766629 | None:intergenic | 50.0% | |
| ! | TCTTGATGACACCATAGCCG+TGG | - | chr1_3:62766672-62766691 | None:intergenic | 50.0% |
| !! | ACGGCTATGGTGTCATCAAG+AGG | + | chr1_3:62766671-62766690 | Msa0131800:CDS | 50.0% |
| TTGAATGGCAGGGCTTTCCT+TGG | + | chr1_3:62766801-62766820 | Msa0131800:intron | 50.0% | |
| AGTGGTTGCTCACACTTCCA+AGG | - | chr1_3:62766821-62766840 | None:intergenic | 50.0% | |
| ACAAGACACGCACAACCCAA+AGG | - | chr1_3:62767004-62767023 | None:intergenic | 50.0% | |
| GTTATGGGAAGCCACGGCTA+TGG | + | chr1_3:62766658-62766677 | Msa0131800:CDS | 55.0% | |
| GTTATGGGAAGCCACGGCTA+TGG | + | chr1_3:62766658-62766677 | Msa0131800:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 62765936 | 62767072 | 62765936 | ID=Msa0131800;Name=Msa0131800 |
| chr1_3 | mRNA | 62765936 | 62767072 | 62765936 | ID=Msa0131800-mRNA-1;Parent=Msa0131800;Name=Msa0131800-mRNA-1;_AED=0.09;_eAED=0.09;_QI=147|1|1|1|1|1|4|161|165 |
| chr1_3 | exon | 62765936 | 62766260 | 62765936 | ID=Msa0131800-mRNA-1:exon:20945;Parent=Msa0131800-mRNA-1 |
| chr1_3 | exon | 62766355 | 62766461 | 62766355 | ID=Msa0131800-mRNA-1:exon:20946;Parent=Msa0131800-mRNA-1 |
| chr1_3 | exon | 62766580 | 62766692 | 62766580 | ID=Msa0131800-mRNA-1:exon:20947;Parent=Msa0131800-mRNA-1 |
| chr1_3 | exon | 62766812 | 62767072 | 62766812 | ID=Msa0131800-mRNA-1:exon:20948;Parent=Msa0131800-mRNA-1 |
| chr1_3 | five_prime_UTR | 62765936 | 62766082 | 62765936 | ID=Msa0131800-mRNA-1:five_prime_utr;Parent=Msa0131800-mRNA-1 |
| chr1_3 | CDS | 62766083 | 62766260 | 62766083 | ID=Msa0131800-mRNA-1:cds;Parent=Msa0131800-mRNA-1 |
| chr1_3 | CDS | 62766355 | 62766461 | 62766355 | ID=Msa0131800-mRNA-1:cds;Parent=Msa0131800-mRNA-1 |
| chr1_3 | CDS | 62766580 | 62766692 | 62766580 | ID=Msa0131800-mRNA-1:cds;Parent=Msa0131800-mRNA-1 |
| chr1_3 | CDS | 62766812 | 62766911 | 62766812 | ID=Msa0131800-mRNA-1:cds;Parent=Msa0131800-mRNA-1 |
| chr1_3 | three_prime_UTR | 62766912 | 62767072 | 62766912 | ID=Msa0131800-mRNA-1:three_prime_utr;Parent=Msa0131800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
