Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080910 | AES61500.1 | 93.333 | 75 | 4 | 1 | 2 | 76 | 19 | 92 | 1.13e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080910 | G7IAB9 | 93.333 | 75 | 4 | 1 | 2 | 76 | 19 | 92 | 5.42e-42 | 142 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0080910 | Msa0080990 | 0.805325 | 1.409888e-49 | -8.615850e-47 |
| Msa0080910 | Msa0173430 | 0.841273 | 5.252095e-58 | -8.615850e-47 |
| Msa0080910 | Msa0748000 | 0.804088 | 2.555231e-49 | -8.615850e-47 |
| Msa0080910 | Msa1339580 | 0.801007 | 1.102918e-48 | -8.615850e-47 |
| Msa0080910 | Msa1376830 | 0.880758 | 4.217120e-70 | -8.615850e-47 |
| Msa0080910 | Msa1443140 | 0.979202 | 1.871369e-147 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080910 | MtrunA17_Chr1g0193301 | 93.333 | 75 | 4 | 1 | 2 | 76 | 19 | 92 | 1.04e-45 | 142 |
| Msa0080910 | MtrunA17_Chr1g0193231 | 93.333 | 75 | 4 | 1 | 2 | 76 | 18 | 91 | 1.15e-45 | 142 |
| Msa0080910 | MtrunA17_Chr1g0193261 | 93.333 | 75 | 4 | 1 | 2 | 76 | 18 | 91 | 1.22e-45 | 142 |
| Msa0080910 | MtrunA17_Chr1g0193291 | 90.411 | 73 | 5 | 1 | 4 | 76 | 19 | 89 | 1.59e-41 | 132 |
| Msa0080910 | MtrunA17_Chr7g0271321 | 61.644 | 73 | 23 | 1 | 1 | 73 | 15 | 82 | 5.77e-25 | 90.1 |
| Msa0080910 | MtrunA17_Chr1g0193271 | 82.927 | 41 | 7 | 0 | 78 | 118 | 5 | 45 | 6.57e-19 | 74.7 |
| Msa0080910 | MtrunA17_Chr1g0193271 | 54.054 | 74 | 26 | 4 | 1 | 74 | 16 | 81 | 4.98e-16 | 67.4 |
| Msa0080910 | MtrunA17_Chr1g0193251 | 50.704 | 71 | 28 | 3 | 8 | 78 | 22 | 85 | 6.86e-15 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGGTATTATTATGATAA+TGG | 0.388759 | 1_2:+59340426 | Msa0080910:CDS |
| GTAGCTCTCATGTCAATAAC+AGG | 0.406659 | 1_2:-59340510 | None:intergenic |
| TGATGAAGACAGAGGCAGTT+GGG | 0.419629 | 1_2:+59340476 | Msa0080910:CDS |
| AAGCAAAGAGGAGGAGGAGG+AGG | 0.445528 | 1_2:+59340408 | Msa0080910:CDS |
| TTACCTTTGTCTTCATCGCT+AGG | 0.455729 | 1_2:-59343682 | None:intergenic |
| TTTCTGAATCTGAAATTCAC+TGG | 0.475847 | 1_2:+59340562 | Msa0080910:CDS |
| CTGCCTCTGTCTTCATCACT+AGG | 0.487696 | 1_2:-59340471 | None:intergenic |
| AACAAGCAAAGAGGAGGAGG+AGG | 0.504904 | 1_2:+59340405 | Msa0080910:CDS |
| AGTAACAAGCAAAGAGGAGG+AGG | 0.509012 | 1_2:+59340402 | Msa0080910:CDS |
| TCTAAGAATAAGTATAGAGC+AGG | 0.537024 | 1_2:+59343628 | Msa0080910:CDS |
| GTGATGAAGACAGAGGCAGT+TGG | 0.562563 | 1_2:+59340475 | Msa0080910:CDS |
| ATGATTGCGGACGCAAGACA+TGG | 0.589196 | 1_2:+59343659 | Msa0080910:CDS |
| GATGAAGACAGAGGCAGTTG+GGG | 0.609217 | 1_2:+59340477 | Msa0080910:CDS |
| TCAAGCAGTAACAAGCAAAG+AGG | 0.618348 | 1_2:+59340396 | Msa0080910:CDS |
| AGCAGTAACAAGCAAAGAGG+AGG | 0.623740 | 1_2:+59340399 | Msa0080910:CDS |
| AGCAAAGAGGAGGAGGAGGA+GGG | 0.628756 | 1_2:+59340409 | Msa0080910:CDS |
| GCAGGATACTATGATGATTG+CGG | 0.643873 | 1_2:+59343646 | Msa0080910:CDS |
| TGGCCTAGTGATGAAGACAG+AGG | 0.698060 | 1_2:+59340468 | Msa0080910:CDS |
| GTGCATATGATAACAAAGTG+TGG | 0.728033 | 1_2:+59340448 | Msa0080910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTATACATAAATATAA+GGG | - | chr1_2:59343433-59343452 | None:intergenic | 10.0% |
| !! | TATTTGTATACATAAATATA+AGG | - | chr1_2:59343434-59343453 | None:intergenic | 10.0% |
| !! | AGATACAAACAAATTTAAAA+TGG | - | chr1_2:59340636-59340655 | None:intergenic | 15.0% |
| !!! | ATAAATTTTCTCTTAATACT+CGG | - | chr1_2:59341231-59341250 | None:intergenic | 15.0% |
| !! | TAGATTTGATTAAGAAAATA+TGG | + | chr1_2:59341447-59341466 | Msa0080910:intron | 15.0% |
| !! | TTTATTAGAACAATTCAATT+AGG | + | chr1_2:59341717-59341736 | Msa0080910:intron | 15.0% |
| !! | TAAAATAATTGGAAATGTTA+TGG | + | chr1_2:59342961-59342980 | Msa0080910:intron | 15.0% |
| !! | TCTAATTTAATTCTAAACTA+TGG | + | chr1_2:59343126-59343145 | Msa0080910:intron | 15.0% |
| !!! | GTTGCAGATTTTTTTTTTAA+GGG | - | chr1_2:59340981-59341000 | None:intergenic | 20.0% |
| !!! | TGTTGCAGATTTTTTTTTTA+AGG | - | chr1_2:59340982-59341001 | None:intergenic | 20.0% |
| !! | TTCAATTTATTTAGATGAAG+TGG | - | chr1_2:59341202-59341221 | None:intergenic | 20.0% |
| !!! | TAAATTTTCTCTTAATACTC+GGG | - | chr1_2:59341230-59341249 | None:intergenic | 20.0% |
| !! | TTGAATTGTTCTAATAAACA+GGG | - | chr1_2:59341715-59341734 | None:intergenic | 20.0% |
| !! | ATTGAATTGTTCTAATAAAC+AGG | - | chr1_2:59341716-59341735 | None:intergenic | 20.0% |
| !! | GAAATAAAACATACATGAAT+TGG | + | chr1_2:59341977-59341996 | Msa0080910:intron | 20.0% |
| !!! | TGCAGTATTTATAAAAGTTT+TGG | + | chr1_2:59342094-59342113 | Msa0080910:intron | 20.0% |
| !!! | GCAGTATTTATAAAAGTTTT+GGG | + | chr1_2:59342095-59342114 | Msa0080910:intron | 20.0% |
| !! | TTTAAAAATTCCTCATGATA+AGG | + | chr1_2:59342401-59342420 | Msa0080910:intron | 20.0% |
| !! | ACAAAAAGAGAAATTATCAA+GGG | - | chr1_2:59342446-59342465 | None:intergenic | 20.0% |
| !! | ACCTTTAATATAGAAAACAA+GGG | - | chr1_2:59342512-59342531 | None:intergenic | 20.0% |
| !! | AACCTTTAATATAGAAAACA+AGG | - | chr1_2:59342513-59342532 | None:intergenic | 20.0% |
| !! | ACATGATCAATATAAATTTC+AGG | - | chr1_2:59342694-59342713 | None:intergenic | 20.0% |
| !! | TGTAACAAAAATTTGTGAAA+AGG | - | chr1_2:59342855-59342874 | None:intergenic | 20.0% |
| ! | TTTACTACTTCGATAGTATT+TGG | - | chr1_2:59341291-59341310 | None:intergenic | 25.0% |
| ! | TTCAATCGCGTTATAAAAAT+AGG | + | chr1_2:59341349-59341368 | Msa0080910:intron | 25.0% |
| ! | GAAGAAGATTCATAACAAAT+AGG | - | chr1_2:59341530-59341549 | None:intergenic | 25.0% |
| !! | AATCGTTTGTTAGTGATAAT+AGG | - | chr1_2:59341675-59341694 | None:intergenic | 25.0% |
| ! | AACATACATGAATTGGTAAA+AGG | + | chr1_2:59341984-59342003 | Msa0080910:intron | 25.0% |
| !! | TAATTTTGCTTCTTAAATCG+CGG | + | chr1_2:59342188-59342207 | Msa0080910:intron | 25.0% |
| ! | TCCTAAAAATTACGTAATGA+CGG | + | chr1_2:59342326-59342345 | Msa0080910:intron | 25.0% |
| ! | CACAAAAAGAGAAATTATCA+AGG | - | chr1_2:59342447-59342466 | None:intergenic | 25.0% |
| !! | GATAATTTCTCTTTTTGTGA+AGG | + | chr1_2:59342448-59342467 | Msa0080910:intron | 25.0% |
| !!! | TCCCTTGTTTTCTATATTAA+AGG | + | chr1_2:59342508-59342527 | Msa0080910:intron | 25.0% |
| !! | TATTGTTGTTGCTGAATTAA+GGG | + | chr1_2:59342558-59342577 | Msa0080910:intron | 25.0% |
| !! | CCAAAATCACTGATTATTAT+TGG | - | chr1_2:59343264-59343283 | None:intergenic | 25.0% |
| !! | CCAATAATAATCAGTGATTT+TGG | + | chr1_2:59343261-59343280 | Msa0080910:intron | 25.0% |
| !! | GGAGGGTATTATTATGATAA+TGG | + | chr1_2:59340426-59340445 | Msa0080910:CDS | 30.0% |
| ! | TTTCTGAATCTGAAATTCAC+TGG | + | chr1_2:59340562-59340581 | Msa0080910:CDS | 30.0% |
| CTCTCTGTTGTAAATAGTTA+TGG | + | chr1_2:59340654-59340673 | Msa0080910:intron | 30.0% | |
| GTGTTTGGATAAGATGATTT+AGG | + | chr1_2:59340785-59340804 | Msa0080910:intron | 30.0% | |
| ! | ATGCGAGTACTAAATTTTCT+TGG | + | chr1_2:59341065-59341084 | Msa0080910:intron | 30.0% |
| !!! | GTTTATTTTGTTTTGCCACT+AGG | + | chr1_2:59341382-59341401 | Msa0080910:intron | 30.0% |
| AGATTCATAACAAATAGGTG+TGG | - | chr1_2:59341525-59341544 | None:intergenic | 30.0% | |
| AGTGATAATAGGTTAACGTT+CGG | - | chr1_2:59341664-59341683 | None:intergenic | 30.0% | |
| TTACAACATCTCTGTTTGAA+GGG | - | chr1_2:59342171-59342190 | None:intergenic | 30.0% | |
| ATTACAACATCTCTGTTTGA+AGG | - | chr1_2:59342172-59342191 | None:intergenic | 30.0% | |
| ! | ACGTTTAATTTAGCAACCAA+GGG | - | chr1_2:59342488-59342507 | None:intergenic | 30.0% |
| ! | AACGTTTAATTTAGCAACCA+AGG | - | chr1_2:59342489-59342508 | None:intergenic | 30.0% |
| AAAGGTTTCCACTGTTATAT+TGG | + | chr1_2:59342526-59342545 | Msa0080910:intron | 30.0% | |
| ! | CTATTGTTGTTGCTGAATTA+AGG | + | chr1_2:59342557-59342576 | Msa0080910:intron | 30.0% |
| ! | ATTGTTGTTGCTGAATTAAG+GGG | + | chr1_2:59342559-59342578 | Msa0080910:intron | 30.0% |
| ! | AGCAAAACATGTTGATGAAA+AGG | - | chr1_2:59343072-59343091 | None:intergenic | 30.0% |
| TATTATCGTGCACATAGTTT+AGG | + | chr1_2:59343156-59343175 | Msa0080910:intron | 30.0% | |
| ATGATTTGAACCATTTAGGT+TGG | + | chr1_2:59343363-59343382 | Msa0080910:intron | 30.0% | |
| TTAAGAATCTGATAAAGCAG+TGG | - | chr1_2:59343395-59343414 | None:intergenic | 30.0% | |
| !!! | ATTTCTGCTTCTTTTTTTGC+TGG | - | chr1_2:59343498-59343517 | None:intergenic | 30.0% |
| TCTAAGAATAAGTATAGAGC+AGG | + | chr1_2:59343628-59343647 | Msa0080910:CDS | 30.0% | |
| GTGCATATGATAACAAAGTG+TGG | + | chr1_2:59340448-59340467 | Msa0080910:CDS | 35.0% | |
| ! | TGTTTTCTATCCTACTGATC+AGG | - | chr1_2:59340597-59340616 | None:intergenic | 35.0% |
| CATCTTATCCAAACACTCAT+GGG | - | chr1_2:59340781-59340800 | None:intergenic | 35.0% | |
| TCATCTTATCCAAACACTCA+TGG | - | chr1_2:59340782-59340801 | None:intergenic | 35.0% | |
| GCTGTATAGGATCACATTAA+TGG | - | chr1_2:59340910-59340929 | None:intergenic | 35.0% | |
| ! | GTTTTGTAGCCTAACAACAT+CGG | - | chr1_2:59341141-59341160 | None:intergenic | 35.0% |
| TAAACACAACTGCAAGTCTT+GGG | - | chr1_2:59341168-59341187 | None:intergenic | 35.0% | |
| TTAAACACAACTGCAAGTCT+TGG | - | chr1_2:59341169-59341188 | None:intergenic | 35.0% | |
| TTGACGTAATGATAGACGTT+TGG | + | chr1_2:59341257-59341276 | Msa0080910:intron | 35.0% | |
| AAGTTAAAAACAGTCCTCGT+GGG | - | chr1_2:59341323-59341342 | None:intergenic | 35.0% | |
| TAGGTGTGGTATACCAATTA+GGG | - | chr1_2:59341511-59341530 | None:intergenic | 35.0% | |
| ATAGGTGTGGTATACCAATT+AGG | - | chr1_2:59341512-59341531 | None:intergenic | 35.0% | |
| AGAATTATTAGACCACCCAA+GGG | - | chr1_2:59341630-59341649 | None:intergenic | 35.0% | |
| AAGAATTATTAGACCACCCA+AGG | - | chr1_2:59341631-59341650 | None:intergenic | 35.0% | |
| GGTGGTCTAATAATTCTTGA+AGG | + | chr1_2:59341633-59341652 | Msa0080910:intron | 35.0% | |
| !! | CTAATAAACAGGGTTAGTCT+AGG | - | chr1_2:59341705-59341724 | None:intergenic | 35.0% |
| TCATTCGTTCTCACAAAATC+AGG | + | chr1_2:59341766-59341785 | Msa0080910:intron | 35.0% | |
| ACAGCAACATGTGTCAATTA+GGG | + | chr1_2:59341873-59341892 | Msa0080910:intron | 35.0% | |
| AGGGTTACAAAGATTCATCT+CGG | + | chr1_2:59341892-59341911 | Msa0080910:intron | 35.0% | |
| !!! | AAAGTGCGATTTTGAGACAT+CGG | - | chr1_2:59342037-59342056 | None:intergenic | 35.0% |
| TAAATACTGCACTCAAACTG+AGG | - | chr1_2:59342085-59342104 | None:intergenic | 35.0% | |
| ! | GCCGTCATTACGTAATTTTT+AGG | - | chr1_2:59342330-59342349 | None:intergenic | 35.0% |
| ! | TTGTTTGTTGCCTTATCATG+AGG | - | chr1_2:59342414-59342433 | None:intergenic | 35.0% |
| ! | TTGTTGTTGCTGAATTAAGG+GGG | + | chr1_2:59342560-59342579 | Msa0080910:intron | 35.0% |
| AGAATTTCATTCAGAGAGGT+TGG | - | chr1_2:59342668-59342687 | None:intergenic | 35.0% | |
| GTGAAGAATTTCATTCAGAG+AGG | - | chr1_2:59342672-59342691 | None:intergenic | 35.0% | |
| ! | GTTGATGTTCTTGCCTTTTT+AGG | + | chr1_2:59342735-59342754 | Msa0080910:intron | 35.0% |
| ! | CATGTTGATGAAAAGGTTGT+GGG | - | chr1_2:59343065-59343084 | None:intergenic | 35.0% |
| ! | ACATGTTGATGAAAAGGTTG+TGG | - | chr1_2:59343066-59343085 | None:intergenic | 35.0% |
| TTAGGTACTTGTGAACTAGA+AGG | + | chr1_2:59343174-59343193 | Msa0080910:intron | 35.0% | |
| TAGGTACTTGTGAACTAGAA+GGG | + | chr1_2:59343175-59343194 | Msa0080910:intron | 35.0% | |
| CAGCATGATTTGAACCATTT+AGG | + | chr1_2:59343359-59343378 | Msa0080910:intron | 35.0% | |
| CTAGCATTAATCATCATGGT+TGG | + | chr1_2:59343541-59343560 | Msa0080910:intron | 35.0% | |
| AAGTCTTCTTCTTCTTCTTC+AGG | + | chr1_2:59343577-59343596 | Msa0080910:CDS | 35.0% | |
| TCAAGCAGTAACAAGCAAAG+AGG | + | chr1_2:59340396-59340415 | Msa0080910:CDS | 40.0% | |
| GTAGCTCTCATGTCAATAAC+AGG | - | chr1_2:59340513-59340532 | None:intergenic | 40.0% | |
| !! | TCCAGCCTTTGAATTTTAGC+AGG | + | chr1_2:59340849-59340868 | Msa0080910:intron | 40.0% |
| TCCTGCTAAAATTCAAAGGC+TGG | - | chr1_2:59340853-59340872 | None:intergenic | 40.0% | |
| TCGCTCCTGCTAAAATTCAA+AGG | - | chr1_2:59340857-59340876 | None:intergenic | 40.0% | |
| ATGTGATCCTATACAGCTTG+AGG | + | chr1_2:59340913-59340932 | Msa0080910:intron | 40.0% | |
| GTTTAGTGTTTGCAGTTCTG+CGG | + | chr1_2:59340937-59340956 | Msa0080910:intron | 40.0% | |
| TTTAGTGTTTGCAGTTCTGC+GGG | + | chr1_2:59340938-59340957 | Msa0080910:intron | 40.0% | |
| ! | TCAGTTGAGCTAGGTTTTAC+GGG | - | chr1_2:59341113-59341132 | None:intergenic | 40.0% |
| ! | GTCAGTTGAGCTAGGTTTTA+CGG | - | chr1_2:59341114-59341133 | None:intergenic | 40.0% |
| CTGACAATACCGATGTTGTT+AGG | + | chr1_2:59341129-59341148 | Msa0080910:intron | 40.0% | |
| CTTGCAGTTGTGTTTAAGTG+TGG | + | chr1_2:59341172-59341191 | Msa0080910:intron | 40.0% | |
| GTAAAAATATCGATCCCACG+AGG | + | chr1_2:59341306-59341325 | Msa0080910:intron | 40.0% | |
| GAAGTTAAAAACAGTCCTCG+TGG | - | chr1_2:59341324-59341343 | None:intergenic | 40.0% | |
| AAACCAAATCTACTGCCTAG+TGG | - | chr1_2:59341400-59341419 | None:intergenic | 40.0% | |
| ATCCTCTAAGTTCCCCTAAT+TGG | + | chr1_2:59341495-59341514 | Msa0080910:intron | 40.0% | |
| TACCAATTAGGGGAACTTAG+AGG | - | chr1_2:59341500-59341519 | None:intergenic | 40.0% | |
| AGGTGTGGTATACCAATTAG+GGG | - | chr1_2:59341510-59341529 | None:intergenic | 40.0% | |
| ! | GAGAAGAGGGTTCTAATTCA+AGG | - | chr1_2:59341590-59341609 | None:intergenic | 40.0% |
| CACAGCAACATGTGTCAATT+AGG | + | chr1_2:59341872-59341891 | Msa0080910:intron | 40.0% | |
| TCATGCAACTTATACTGCTC+TGG | - | chr1_2:59342280-59342299 | None:intergenic | 40.0% | |
| TCCACTGTTATATTGGAACC+TGG | + | chr1_2:59342533-59342552 | Msa0080910:intron | 40.0% | |
| ACCAGGTTCCAATATAACAG+TGG | - | chr1_2:59342537-59342556 | None:intergenic | 40.0% | |
| TTCAGCAACAACAATAGACC+AGG | - | chr1_2:59342554-59342573 | None:intergenic | 40.0% | |
| ! | AATTAAGGGGGTATGCTTCA+TGG | + | chr1_2:59342572-59342591 | Msa0080910:intron | 40.0% |
| TCTCATCACCTCCATCTATT+AGG | + | chr1_2:59342616-59342635 | Msa0080910:intron | 40.0% | |
| ATCACCTCCATCTATTAGGA+AGG | + | chr1_2:59342620-59342639 | Msa0080910:intron | 40.0% | |
| TCACCTCCATCTATTAGGAA+GGG | + | chr1_2:59342621-59342640 | Msa0080910:intron | 40.0% | |
| ATTTCATTCAGAGAGGTTGG+AGG | - | chr1_2:59342665-59342684 | None:intergenic | 40.0% | |
| !! | CTTGCCTTTTTAGGCAACTT+TGG | + | chr1_2:59342744-59342763 | Msa0080910:intron | 40.0% |
| GTCACCAAAGTTGCCTAAAA+AGG | - | chr1_2:59342751-59342770 | None:intergenic | 40.0% | |
| TCAAAGTGCAAAAGAAGACG+CGG | - | chr1_2:59342797-59342816 | None:intergenic | 40.0% | |
| AGGTACTTGTGAACTAGAAG+GGG | + | chr1_2:59343176-59343195 | Msa0080910:intron | 40.0% | |
| TCTCTCATGTACGAAACTAG+CGG | + | chr1_2:59343291-59343310 | Msa0080910:intron | 40.0% | |
| AGGGTTGTAACAACTTTGTC+GGG | - | chr1_2:59343332-59343351 | None:intergenic | 40.0% | |
| CAGGGTTGTAACAACTTTGT+CGG | - | chr1_2:59343333-59343352 | None:intergenic | 40.0% | |
| TGGTTCAAATCATGCTGAGT+TGG | - | chr1_2:59343356-59343375 | None:intergenic | 40.0% | |
| GTGGTAAAGACCAACCTAAA+TGG | - | chr1_2:59343376-59343395 | None:intergenic | 40.0% | |
| !!! | GCTTCTTTTTTTGCTGGAAG+TGG | - | chr1_2:59343492-59343511 | None:intergenic | 40.0% |
| TAATGCTAGCTGCTGGATTA+AGG | - | chr1_2:59343530-59343549 | None:intergenic | 40.0% | |
| TGATGATTAATGCTAGCTGC+TGG | - | chr1_2:59343537-59343556 | None:intergenic | 40.0% | |
| GCAGCTAGCATTAATCATCA+TGG | + | chr1_2:59343537-59343556 | Msa0080910:intron | 40.0% | |
| GCATTAATCATCATGGTTGG+TGG | + | chr1_2:59343544-59343563 | Msa0080910:intron | 40.0% | |
| !! | TAATCATCATGGTTGGTGGT+AGG | + | chr1_2:59343548-59343567 | Msa0080910:intron | 40.0% |
| GCAGGATACTATGATGATTG+CGG | + | chr1_2:59343646-59343665 | Msa0080910:CDS | 40.0% | |
| AGCAGTAACAAGCAAAGAGG+AGG | + | chr1_2:59340399-59340418 | Msa0080910:CDS | 45.0% | |
| AGTAACAAGCAAAGAGGAGG+AGG | + | chr1_2:59340402-59340421 | Msa0080910:CDS | 45.0% | |
| TGATGAAGACAGAGGCAGTT+GGG | + | chr1_2:59340476-59340495 | Msa0080910:CDS | 45.0% | |
| TGCAACAACCCATGAGTGTT+TGG | + | chr1_2:59340770-59340789 | Msa0080910:intron | 45.0% | |
| CTAAACGCCTCAAGCTGTAT+AGG | - | chr1_2:59340923-59340942 | None:intergenic | 45.0% | |
| TCGGTATTGTCAGTTGAGCT+AGG | - | chr1_2:59341122-59341141 | None:intergenic | 45.0% | |
| TTGCCACTAGGCAGTAGATT+TGG | + | chr1_2:59341394-59341413 | Msa0080910:intron | 45.0% | |
| GAGGCTGTAGTTTGAGAAGA+GGG | - | chr1_2:59341603-59341622 | None:intergenic | 45.0% | |
| TATTAGACCACCCAAGGGAT+TGG | - | chr1_2:59341625-59341644 | None:intergenic | 45.0% | |
| TAGGTCTAAGTCGAAAGCCA+TGG | + | chr1_2:59341736-59341755 | Msa0080910:intron | 45.0% | |
| !!! | CGATTTTGAGACATCGGAGA+CGG | - | chr1_2:59342031-59342050 | None:intergenic | 45.0% |
| ! | AGGAACAGGGGTTACGATTT+TGG | - | chr1_2:59342065-59342084 | None:intergenic | 45.0% |
| TGCACTCAAACTGAGGAACA+GGG | - | chr1_2:59342078-59342097 | None:intergenic | 45.0% | |
| TCTCTGTTTGAAGGGAATCG+CGG | - | chr1_2:59342163-59342182 | None:intergenic | 45.0% | |
| ATCGCGGCAAGACTTGAAAT+TGG | + | chr1_2:59342204-59342223 | Msa0080910:intron | 45.0% | |
| TGTCCCTTCCTAATAGATGG+AGG | - | chr1_2:59342627-59342646 | None:intergenic | 45.0% | |
| GCATGTCCCTTCCTAATAGA+TGG | - | chr1_2:59342630-59342649 | None:intergenic | 45.0% | |
| ! | GCAACTTTGGTGACTTCTCT+AGG | + | chr1_2:59342757-59342776 | Msa0080910:intron | 45.0% |
| CAAAGTGCAAAAGAAGACGC+GGG | - | chr1_2:59342796-59342815 | None:intergenic | 45.0% | |
| ! | AAAAGGCACAAGACACACGA+GGG | - | chr1_2:59342838-59342857 | None:intergenic | 45.0% |
| ! | TTTGTCGGGCACATTTTCTG+TGG | - | chr1_2:59343318-59343337 | None:intergenic | 45.0% |
| ! | CAAATCATGCTGAGTTGGCA+GGG | - | chr1_2:59343351-59343370 | None:intergenic | 45.0% |
| ! | TCAAATCATGCTGAGTTGGC+AGG | - | chr1_2:59343352-59343371 | None:intergenic | 45.0% |
| TTTGCTGGAAGTGGTTGTCT+TGG | - | chr1_2:59343483-59343502 | None:intergenic | 45.0% | |
| !!! | ATTGAAAAATTTAAAATAAT+TGG | + | chr1_2:59342950-59342969 | Msa0080910:intron | 5.0% |
| AACAAGCAAAGAGGAGGAGG+AGG | + | chr1_2:59340405-59340424 | Msa0080910:CDS | 50.0% | |
| TGGCCTAGTGATGAAGACAG+AGG | + | chr1_2:59340468-59340487 | Msa0080910:CDS | 50.0% | |
| CTGCCTCTGTCTTCATCACT+AGG | - | chr1_2:59340474-59340493 | None:intergenic | 50.0% | |
| GTGATGAAGACAGAGGCAGT+TGG | + | chr1_2:59340475-59340494 | Msa0080910:CDS | 50.0% | |
| GATGAAGACAGAGGCAGTTG+GGG | + | chr1_2:59340477-59340496 | Msa0080910:CDS | 50.0% | |
| GCAAGCTCAACCTGATCAGT+AGG | + | chr1_2:59340584-59340603 | Msa0080910:intron | 50.0% | |
| GTCTCTTCCAGCTTAAGCAG+AGG | + | chr1_2:59340807-59340826 | Msa0080910:intron | 50.0% | |
| AACTCTGCCTCTGCTTAAGC+TGG | - | chr1_2:59340817-59340836 | None:intergenic | 50.0% | |
| GGGGAACTTAGAGGATTCGA+AGG | - | chr1_2:59341491-59341510 | None:intergenic | 50.0% | |
| GGAGGCTGTAGTTTGAGAAG+AGG | - | chr1_2:59341604-59341623 | None:intergenic | 50.0% | |
| AACTACAGCCTCCAATCCCT+TGG | + | chr1_2:59341611-59341630 | Msa0080910:intron | 50.0% | |
| ACTACAGCCTCCAATCCCTT+GGG | + | chr1_2:59341612-59341631 | Msa0080910:intron | 50.0% | |
| AAGTCGAAAGCCATGGTCAG+TGG | + | chr1_2:59341743-59341762 | Msa0080910:intron | 50.0% | |
| GAACGAATGACCACTGACCA+TGG | - | chr1_2:59341756-59341775 | None:intergenic | 50.0% | |
| GCACTCAAACTGAGGAACAG+GGG | - | chr1_2:59342077-59342096 | None:intergenic | 50.0% | |
| CTGCACTCAAACTGAGGAAC+AGG | - | chr1_2:59342079-59342098 | None:intergenic | 50.0% | |
| GGCAAGACTTGAAATTGGCG+TGG | + | chr1_2:59342209-59342228 | Msa0080910:intron | 50.0% | |
| CATTCAGAGAGGTTGGAGGA+AGG | - | chr1_2:59342661-59342680 | None:intergenic | 50.0% | |
| AAAAGAAGACGCGGGTGTGT+AGG | - | chr1_2:59342788-59342807 | None:intergenic | 50.0% | |
| ! | AAAGGCACAAGACACACGAG+GGG | - | chr1_2:59342837-59342856 | None:intergenic | 50.0% |
| ! | GAAAAGGCACAAGACACACG+AGG | - | chr1_2:59342839-59342858 | None:intergenic | 50.0% |
| ATGATTGCGGACGCAAGACA+TGG | + | chr1_2:59343659-59343678 | Msa0080910:CDS | 50.0% | |
| AAGCAAAGAGGAGGAGGAGG+AGG | + | chr1_2:59340408-59340427 | Msa0080910:CDS | 55.0% | |
| AGCAAAGAGGAGGAGGAGGA+GGG | + | chr1_2:59340409-59340428 | Msa0080910:CDS | 55.0% | |
| TAGACCACCCAAGGGATTGG+AGG | - | chr1_2:59341622-59341641 | None:intergenic | 55.0% | |
| GACATCGGAGACGGCTAGAA+GGG | - | chr1_2:59342022-59342041 | None:intergenic | 55.0% | |
| AGACATCGGAGACGGCTAGA+AGG | - | chr1_2:59342023-59342042 | None:intergenic | 55.0% | |
| !! | AGGCGCGACGCGATTTTGAT+GGG | - | chr1_2:59342126-59342145 | None:intergenic | 55.0% |
| ! | AAGGCGCGACGCGATTTTGA+TGG | - | chr1_2:59342127-59342146 | None:intergenic | 55.0% |
| ! | TCGCGTCGCGCCTTGTTAAT+TGG | + | chr1_2:59342133-59342152 | Msa0080910:intron | 55.0% |
| TCGCGGCACGCCAATTAACA+AGG | - | chr1_2:59342146-59342165 | None:intergenic | 55.0% | |
| GGTCTCATCAGTGACACCCT+TGG | + | chr1_2:59342469-59342488 | Msa0080910:intron | 55.0% | |
| AAGGCACAAGACACACGAGG+GGG | - | chr1_2:59342836-59342855 | None:intergenic | 55.0% | |
| ACAGCCTCCAATCCCTTGGG+TGG | + | chr1_2:59341615-59341634 | Msa0080910:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 59340375 | 59343696 | 59340375 | ID=Msa0080910;Name=Msa0080910 |
| chr1_2 | mRNA | 59340375 | 59343696 | 59340375 | ID=Msa0080910-mRNA-1;Parent=Msa0080910;Name=Msa0080910-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|0|0|2|0|118 |
| chr1_2 | exon | 59340375 | 59340601 | 59340375 | ID=Msa0080910-mRNA-1:exon:19231;Parent=Msa0080910-mRNA-1 |
| chr1_2 | exon | 59343570 | 59343696 | 59343570 | ID=Msa0080910-mRNA-1:exon:19232;Parent=Msa0080910-mRNA-1 |
| chr1_2 | CDS | 59340375 | 59340601 | 59340375 | ID=Msa0080910-mRNA-1:cds;Parent=Msa0080910-mRNA-1 |
| chr1_2 | CDS | 59343570 | 59343696 | 59343570 | ID=Msa0080910-mRNA-1:cds;Parent=Msa0080910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
