Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443140 | G7IAB9 | 93.333 | 75 | 4 | 1 | 2 | 76 | 19 | 92 | 4.15e-42 | 143 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0080910 | Msa1443140 | 0.979202 | 1.871369e-147 | -8.615850e-47 |
| Msa0080990 | Msa1443140 | 0.824918 | 6.220146e-54 | -8.615850e-47 |
| Msa1356990 | Msa1443140 | 0.813702 | 2.238662e-51 | -8.615850e-47 |
| Msa1376830 | Msa1443140 | 0.883362 | 4.783226e-71 | -8.615850e-47 |
| Msa0748000 | Msa1443140 | 0.823997 | 1.024737e-53 | -8.615850e-47 |
| Msa0173430 | Msa1443140 | 0.822382 | 2.440455e-53 | -8.615850e-47 |
| Msa1339580 | Msa1443140 | 0.820943 | 5.250153e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443140 | MtrunA17_Chr1g0193301 | 93.333 | 75 | 4 | 1 | 2 | 76 | 19 | 92 | 7.99e-46 | 143 |
| Msa1443140 | MtrunA17_Chr1g0193231 | 93.333 | 75 | 4 | 1 | 2 | 76 | 18 | 91 | 8.56e-46 | 143 |
| Msa1443140 | MtrunA17_Chr1g0193261 | 93.333 | 75 | 4 | 1 | 2 | 76 | 18 | 91 | 1.03e-45 | 143 |
| Msa1443140 | MtrunA17_Chr1g0193291 | 90.411 | 73 | 5 | 1 | 4 | 76 | 19 | 89 | 1.55e-41 | 132 |
| Msa1443140 | MtrunA17_Chr7g0271321 | 61.644 | 73 | 23 | 1 | 1 | 73 | 15 | 82 | 6.55e-25 | 90.1 |
| Msa1443140 | MtrunA17_Chr1g0193271 | 83.333 | 42 | 7 | 0 | 78 | 119 | 5 | 46 | 1.64e-19 | 76.6 |
| Msa1443140 | MtrunA17_Chr1g0193271 | 54.054 | 74 | 26 | 4 | 1 | 74 | 16 | 81 | 5.61e-16 | 67.4 |
| Msa1443140 | MtrunA17_Chr1g0193251 | 50.704 | 71 | 28 | 3 | 8 | 78 | 22 | 85 | 8.13e-15 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 20 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGGTATTATTATGATAA+TGG | 0.388759 | tig0030339:+4601 | Msa1443140:CDS |
| GTAGCTCTCATGTCAATAAC+AGG | 0.406659 | tig0030339:-4685 | None:intergenic |
| TGATGAAGACAGAGGCAGTT+GGG | 0.419629 | tig0030339:+4651 | Msa1443140:CDS |
| AAGCAAAGAGGAGGAGGAGG+AGG | 0.445528 | tig0030339:+4583 | Msa1443140:CDS |
| TTACCTTTGTCTTCATCGCT+AGG | 0.455729 | tig0030339:-7857 | None:intergenic |
| TTTCTGAATCTGAAATTCAC+TGG | 0.475847 | tig0030339:+4737 | Msa1443140:CDS |
| CTGCCTCTGTCTTCATCACT+AGG | 0.487696 | tig0030339:-4646 | None:intergenic |
| AACAAGCAAAGAGGAGGAGG+AGG | 0.504904 | tig0030339:+4580 | Msa1443140:CDS |
| AGTAACAAGCAAAGAGGAGG+AGG | 0.509012 | tig0030339:+4577 | Msa1443140:CDS |
| TCTAAGAATAAGTATAGAGC+AGG | 0.537024 | tig0030339:+7803 | Msa1443140:CDS |
| GTGATGAAGACAGAGGCAGT+TGG | 0.562563 | tig0030339:+4650 | Msa1443140:CDS |
| ATGATTGCGGACGCAAGACA+TGG | 0.589196 | tig0030339:+7834 | Msa1443140:CDS |
| GATGAAGACAGAGGCAGTTG+GGG | 0.609217 | tig0030339:+4652 | Msa1443140:CDS |
| TCAAGCAGTAACAAGCAAAG+AGG | 0.618348 | tig0030339:+4571 | Msa1443140:CDS |
| AGCAGTAACAAGCAAAGAGG+AGG | 0.623740 | tig0030339:+4574 | Msa1443140:CDS |
| AGCAAAGAGGAGGAGGAGGA+GGG | 0.628756 | tig0030339:+4584 | Msa1443140:CDS |
| GCAGGATACTATGATGATTG+CGG | 0.643873 | tig0030339:+7821 | Msa1443140:CDS |
| TGGCCTAGCGATGAAGACAA+AGG | 0.679527 | tig0030339:+7854 | Msa1443140:CDS |
| TGGCCTAGTGATGAAGACAG+AGG | 0.698060 | tig0030339:+4643 | Msa1443140:CDS |
| GTGCATATGATAACAAAGTG+TGG | 0.728033 | tig0030339:+4623 | Msa1443140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTATACATAAATATAA+GGG | - | tig0030339:7608-7627 | None:intergenic | 10.0% |
| !! | TATTTGTATACATAAATATA+AGG | - | tig0030339:7609-7628 | None:intergenic | 10.0% |
| !!! | CCTTATTTATTAATTTTATT+AGG | - | tig0030339:8481-8500 | None:intergenic | 10.0% |
| !! | CCTAATAAAATTAATAAATA+AGG | + | tig0030339:8478-8497 | Msa1443140:intron | 10.0% |
| !! | ACAAAATATTGTAAAAAAAA+AGG | + | tig0030339:8695-8714 | Msa1443140:intron | 10.0% |
| !! | CTTAACAAAATTAATAAATA+AGG | + | tig0030339:8903-8922 | Msa1443140:intron | 10.0% |
| !! | ATTATATTACATAATTAAGA+AGG | - | tig0030339:9121-9140 | None:intergenic | 10.0% |
| !! | AGATACAAACAAATTTAAAA+TGG | - | tig0030339:4811-4830 | None:intergenic | 15.0% |
| !!! | ATAAATTTTCTCTTAATACT+CGG | - | tig0030339:5406-5425 | None:intergenic | 15.0% |
| !! | TAGATTTGATTAAGAAAATA+TGG | + | tig0030339:5622-5641 | Msa1443140:intron | 15.0% |
| !! | TTTATTAGAACAATTCAATT+AGG | + | tig0030339:5892-5911 | Msa1443140:intron | 15.0% |
| !! | TAAAATAATTGGAAATGTTA+TGG | + | tig0030339:7136-7155 | Msa1443140:intron | 15.0% |
| !! | TCTAATTTAATTCTAAACTA+TGG | + | tig0030339:7301-7320 | Msa1443140:intron | 15.0% |
| !!! | GTTGCAGATTTTTTTTTTAA+GGG | - | tig0030339:5156-5175 | None:intergenic | 20.0% |
| !!! | TGTTGCAGATTTTTTTTTTA+AGG | - | tig0030339:5157-5176 | None:intergenic | 20.0% |
| !! | TTCAATTTATTTAGATGAAG+TGG | - | tig0030339:5377-5396 | None:intergenic | 20.0% |
| !!! | TAAATTTTCTCTTAATACTC+GGG | - | tig0030339:5405-5424 | None:intergenic | 20.0% |
| !! | TTGAATTGTTCTAATAAACA+GGG | - | tig0030339:5890-5909 | None:intergenic | 20.0% |
| !! | ATTGAATTGTTCTAATAAAC+AGG | - | tig0030339:5891-5910 | None:intergenic | 20.0% |
| !! | GAAATAAAACATACATGAAT+TGG | + | tig0030339:6152-6171 | Msa1443140:intron | 20.0% |
| !!! | TGCAGTATTTATAAAAGTTT+TGG | + | tig0030339:6269-6288 | Msa1443140:intron | 20.0% |
| !!! | GCAGTATTTATAAAAGTTTT+GGG | + | tig0030339:6270-6289 | Msa1443140:intron | 20.0% |
| !! | TTTAAAAATTCCTCATGATA+AGG | + | tig0030339:6576-6595 | Msa1443140:intron | 20.0% |
| !! | ACAAAAAGAGAAATTATCAA+GGG | - | tig0030339:6621-6640 | None:intergenic | 20.0% |
| !! | ACCTTTAATATAGAAAACAA+GGG | - | tig0030339:6687-6706 | None:intergenic | 20.0% |
| !! | AACCTTTAATATAGAAAACA+AGG | - | tig0030339:6688-6707 | None:intergenic | 20.0% |
| !! | ACATGATCAATATAAATTTC+AGG | - | tig0030339:6869-6888 | None:intergenic | 20.0% |
| !! | TGTAACAAAAATTTGTGAAA+AGG | - | tig0030339:7030-7049 | None:intergenic | 20.0% |
| !! | AACTTATTTAATATCTAACC+CGG | - | tig0030339:8029-8048 | None:intergenic | 20.0% |
| !! | AATAAATATATATGGTGAGA+TGG | + | tig0030339:8122-8141 | Msa1443140:intron | 20.0% |
| !!! | TTGTACACTTTTTTTTTTGA+AGG | - | tig0030339:8679-8698 | None:intergenic | 20.0% |
| !!! | TAAAAAAAAAGGCATGAAAT+TGG | + | tig0030339:8706-8725 | Msa1443140:intron | 20.0% |
| !! | TTGTAAAAAAAAAAAGCAAG+AGG | + | tig0030339:8769-8788 | Msa1443140:intron | 20.0% |
| !!! | TTTTTTAGATGGAATTTGTT+AGG | + | tig0030339:8817-8836 | Msa1443140:intron | 20.0% |
| !! | AACAATGAAATATATACACA+TGG | - | tig0030339:8948-8967 | None:intergenic | 20.0% |
| !! | AAGTTAATTATATGATCACT+CGG | - | tig0030339:9252-9271 | None:intergenic | 20.0% |
| !!! | TATCAAAGAGTTTAAAACAA+AGG | - | tig0030339:9333-9352 | None:intergenic | 20.0% |
| ! | TTTACTACTTCGATAGTATT+TGG | - | tig0030339:5466-5485 | None:intergenic | 25.0% |
| ! | TTCAATCGCGTTATAAAAAT+AGG | + | tig0030339:5524-5543 | Msa1443140:intron | 25.0% |
| ! | GAAGAAGATTCATAACAAAT+AGG | - | tig0030339:5705-5724 | None:intergenic | 25.0% |
| !! | AATCGTTTGTTAGTGATAAT+AGG | - | tig0030339:5850-5869 | None:intergenic | 25.0% |
| ! | AACATACATGAATTGGTAAA+AGG | + | tig0030339:6159-6178 | Msa1443140:intron | 25.0% |
| !! | TAATTTTGCTTCTTAAATCG+CGG | + | tig0030339:6363-6382 | Msa1443140:intron | 25.0% |
| ! | TCCTAAAAATTACGTAATGA+CGG | + | tig0030339:6501-6520 | Msa1443140:intron | 25.0% |
| ! | CACAAAAAGAGAAATTATCA+AGG | - | tig0030339:6622-6641 | None:intergenic | 25.0% |
| !! | GATAATTTCTCTTTTTGTGA+AGG | + | tig0030339:6623-6642 | Msa1443140:intron | 25.0% |
| !!! | TCCCTTGTTTTCTATATTAA+AGG | + | tig0030339:6683-6702 | Msa1443140:intron | 25.0% |
| !! | TATTGTTGTTGCTGAATTAA+GGG | + | tig0030339:6733-6752 | Msa1443140:intron | 25.0% |
| !! | CCAAAATCACTGATTATTAT+TGG | - | tig0030339:7439-7458 | None:intergenic | 25.0% |
| !! | CCAATAATAATCAGTGATTT+TGG | + | tig0030339:7436-7455 | Msa1443140:intron | 25.0% |
| ! | ACTTATTTAATATCTAACCC+GGG | - | tig0030339:8028-8047 | None:intergenic | 25.0% |
| ! | CAACATGATAGAAATGAAAT+TGG | + | tig0030339:8610-8629 | Msa1443140:intron | 25.0% |
| ! | CAAGAGGATATAAATGAAAT+TGG | + | tig0030339:8785-8804 | Msa1443140:intron | 25.0% |
| ! | ATGAAATATATACACATGGT+AGG | - | tig0030339:8944-8963 | None:intergenic | 25.0% |
| ! | CAGACATACATAAAAATTAG+AGG | - | tig0030339:9205-9224 | None:intergenic | 25.0% |
| !! | TTCCAATTCACTAATCTTTT+TGG | + | tig0030339:9273-9292 | Msa1443140:intron | 25.0% |
| !! | TCCAATTCACTAATCTTTTT+GGG | + | tig0030339:9274-9293 | Msa1443140:intron | 25.0% |
| !! | GGAGGGTATTATTATGATAA+TGG | + | tig0030339:4601-4620 | Msa1443140:CDS | 30.0% |
| ! | TTTCTGAATCTGAAATTCAC+TGG | + | tig0030339:4737-4756 | Msa1443140:CDS | 30.0% |
| CTCTCTGTTGTAAATAGTTA+TGG | + | tig0030339:4829-4848 | Msa1443140:intron | 30.0% | |
| GTGTTTGGATAAGATGATTT+AGG | + | tig0030339:4960-4979 | Msa1443140:intron | 30.0% | |
| ! | ATGCGAGTACTAAATTTTCT+TGG | + | tig0030339:5240-5259 | Msa1443140:intron | 30.0% |
| !!! | GTTTATTTTGTTTTGCCACT+AGG | + | tig0030339:5557-5576 | Msa1443140:intron | 30.0% |
| AGATTCATAACAAATAGGTG+TGG | - | tig0030339:5700-5719 | None:intergenic | 30.0% | |
| AGTGATAATAGGTTAACGTT+CGG | - | tig0030339:5839-5858 | None:intergenic | 30.0% | |
| TTACAACATCTCTGTTTGAA+GGG | - | tig0030339:6346-6365 | None:intergenic | 30.0% | |
| ATTACAACATCTCTGTTTGA+AGG | - | tig0030339:6347-6366 | None:intergenic | 30.0% | |
| ! | ACGTTTAATTTAGCAACCAA+GGG | - | tig0030339:6663-6682 | None:intergenic | 30.0% |
| ! | AACGTTTAATTTAGCAACCA+AGG | - | tig0030339:6664-6683 | None:intergenic | 30.0% |
| AAAGGTTTCCACTGTTATAT+TGG | + | tig0030339:6701-6720 | Msa1443140:intron | 30.0% | |
| ! | CTATTGTTGTTGCTGAATTA+AGG | + | tig0030339:6732-6751 | Msa1443140:intron | 30.0% |
| ! | ATTGTTGTTGCTGAATTAAG+GGG | + | tig0030339:6734-6753 | Msa1443140:intron | 30.0% |
| ! | AGCAAAACATGTTGATGAAA+AGG | - | tig0030339:7247-7266 | None:intergenic | 30.0% |
| TATTATCGTGCACATAGTTT+AGG | + | tig0030339:7331-7350 | Msa1443140:intron | 30.0% | |
| ATGATTTGAACCATTTAGGT+TGG | + | tig0030339:7538-7557 | Msa1443140:intron | 30.0% | |
| TTAAGAATCTGATAAAGCAG+TGG | - | tig0030339:7570-7589 | None:intergenic | 30.0% | |
| !!! | ATTTCTGCTTCTTTTTTTGC+TGG | - | tig0030339:7673-7692 | None:intergenic | 30.0% |
| TCTAAGAATAAGTATAGAGC+AGG | + | tig0030339:7803-7822 | Msa1443140:CDS | 30.0% | |
| AAACTCGATTCTTGTATTTG+CGG | - | tig0030339:7931-7950 | None:intergenic | 30.0% | |
| TGTGTAATTTACCACGATTT+AGG | + | tig0030339:8150-8169 | Msa1443140:intron | 30.0% | |
| GTGTAATTTACCACGATTTA+GGG | + | tig0030339:8151-8170 | Msa1443140:intron | 30.0% | |
| TCGAGTTTGCATGAAAATTA+GGG | + | tig0030339:8188-8207 | Msa1443140:intron | 30.0% | |
| ! | TAGGGATTTCTACATTTTAG+AGG | + | tig0030339:8341-8360 | Msa1443140:intron | 30.0% |
| ! | AGGGATTTCTACATTTTAGA+GGG | + | tig0030339:8342-8361 | Msa1443140:intron | 30.0% |
| !! | CATTTTAGAGGGAATTTGTT+AGG | + | tig0030339:8353-8372 | Msa1443140:intron | 30.0% |
| !! | CATTTTAGAGGGAATTTGTT+AGG | + | tig0030339:8353-8372 | Msa1443140:intron | 30.0% |
| CCAAGTTTACATGGAAATTA+GGG | + | tig0030339:8507-8526 | Msa1443140:intron | 30.0% | |
| AACCTAATACAACAAATGAG+AGG | + | tig0030339:8853-8872 | Msa1443140:intron | 30.0% | |
| ACCTAATACAACAAATGAGA+GGG | + | tig0030339:8854-8873 | Msa1443140:intron | 30.0% | |
| CAAATGAGAGGGAAAATATT+AGG | + | tig0030339:8865-8884 | Msa1443140:intron | 30.0% | |
| ATATACACATGGTAGGTATT+AGG | - | tig0030339:8937-8956 | None:intergenic | 30.0% | |
| ATTAATTGCTCCTACACTAT+AGG | + | tig0030339:9000-9019 | Msa1443140:intron | 30.0% | |
| CTAATACTAAGTATGTTGCA+TGG | + | tig0030339:9044-9063 | Msa1443140:intron | 30.0% | |
| ACTGTAACTATAAAATGCCA+AGG | - | tig0030339:9169-9188 | None:intergenic | 30.0% | |
| AATTATATGATCACTCGGTT+CGG | - | tig0030339:9247-9266 | None:intergenic | 30.0% | |
| ACCCAAAAAGATTAGTGAAT+TGG | - | tig0030339:9278-9297 | None:intergenic | 30.0% | |
| GTGCATATGATAACAAAGTG+TGG | + | tig0030339:4623-4642 | Msa1443140:CDS | 35.0% | |
| ! | TGTTTTCTATCCTACTGATC+AGG | - | tig0030339:4772-4791 | None:intergenic | 35.0% |
| CATCTTATCCAAACACTCAT+GGG | - | tig0030339:4956-4975 | None:intergenic | 35.0% | |
| TCATCTTATCCAAACACTCA+TGG | - | tig0030339:4957-4976 | None:intergenic | 35.0% | |
| GCTGTATAGGATCACATTAA+TGG | - | tig0030339:5085-5104 | None:intergenic | 35.0% | |
| ! | GTTTTGTAGCCTAACAACAT+CGG | - | tig0030339:5316-5335 | None:intergenic | 35.0% |
| TAAACACAACTGCAAGTCTT+GGG | - | tig0030339:5343-5362 | None:intergenic | 35.0% | |
| TTAAACACAACTGCAAGTCT+TGG | - | tig0030339:5344-5363 | None:intergenic | 35.0% | |
| TTGACGTAATGATAGACGTT+TGG | + | tig0030339:5432-5451 | Msa1443140:intron | 35.0% | |
| AAGTTAAAAACAGTCCTCGT+GGG | - | tig0030339:5498-5517 | None:intergenic | 35.0% | |
| TAGGTGTGGTATACCAATTA+GGG | - | tig0030339:5686-5705 | None:intergenic | 35.0% | |
| ATAGGTGTGGTATACCAATT+AGG | - | tig0030339:5687-5706 | None:intergenic | 35.0% | |
| AGAATTATTAGACCACCCAA+GGG | - | tig0030339:5805-5824 | None:intergenic | 35.0% | |
| AAGAATTATTAGACCACCCA+AGG | - | tig0030339:5806-5825 | None:intergenic | 35.0% | |
| GGTGGTCTAATAATTCTTGA+AGG | + | tig0030339:5808-5827 | Msa1443140:intron | 35.0% | |
| !! | CTAATAAACAGGGTTAGTCT+AGG | - | tig0030339:5880-5899 | None:intergenic | 35.0% |
| TCATTCGTTCTCACAAAATC+AGG | + | tig0030339:5941-5960 | Msa1443140:intron | 35.0% | |
| ACAGCAACATGTGTCAATTA+GGG | + | tig0030339:6048-6067 | Msa1443140:intron | 35.0% | |
| AGGGTTACAAAGATTCATCT+CGG | + | tig0030339:6067-6086 | Msa1443140:intron | 35.0% | |
| !!! | AAAGTGCGATTTTGAGACAT+CGG | - | tig0030339:6212-6231 | None:intergenic | 35.0% |
| TAAATACTGCACTCAAACTG+AGG | - | tig0030339:6260-6279 | None:intergenic | 35.0% | |
| ! | GCCGTCATTACGTAATTTTT+AGG | - | tig0030339:6505-6524 | None:intergenic | 35.0% |
| ! | TTGTTTGTTGCCTTATCATG+AGG | - | tig0030339:6589-6608 | None:intergenic | 35.0% |
| ! | TTGTTGTTGCTGAATTAAGG+GGG | + | tig0030339:6735-6754 | Msa1443140:intron | 35.0% |
| AGAATTTCATTCAGAGAGGT+TGG | - | tig0030339:6843-6862 | None:intergenic | 35.0% | |
| GTGAAGAATTTCATTCAGAG+AGG | - | tig0030339:6847-6866 | None:intergenic | 35.0% | |
| ! | GTTGATGTTCTTGCCTTTTT+AGG | + | tig0030339:6910-6929 | Msa1443140:intron | 35.0% |
| ! | CATGTTGATGAAAAGGTTGT+GGG | - | tig0030339:7240-7259 | None:intergenic | 35.0% |
| ! | ACATGTTGATGAAAAGGTTG+TGG | - | tig0030339:7241-7260 | None:intergenic | 35.0% |
| TTAGGTACTTGTGAACTAGA+AGG | + | tig0030339:7349-7368 | Msa1443140:intron | 35.0% | |
| TAGGTACTTGTGAACTAGAA+GGG | + | tig0030339:7350-7369 | Msa1443140:intron | 35.0% | |
| CAGCATGATTTGAACCATTT+AGG | + | tig0030339:7534-7553 | Msa1443140:intron | 35.0% | |
| CTAGCATTAATCATCATGGT+TGG | + | tig0030339:7716-7735 | Msa1443140:intron | 35.0% | |
| AAGTCTTCTTCTTCTTCTTC+AGG | + | tig0030339:7752-7771 | Msa1443140:CDS | 35.0% | |
| TCAGCTCTCATGTTAATGTT+AGG | - | tig0030339:7899-7918 | None:intergenic | 35.0% | |
| ATATAGCAAACCCTAAATCG+TGG | - | tig0030339:8164-8183 | None:intergenic | 35.0% | |
| GTCGAGTTTGCATGAAAATT+AGG | + | tig0030339:8187-8206 | Msa1443140:intron | 35.0% | |
| AGAAATGAAAAGCTCATCAG+TGG | + | tig0030339:8308-8327 | Msa1443140:intron | 35.0% | |
| GAAATGAAAAGCTCATCAGT+GGG | + | tig0030339:8309-8328 | Msa1443140:intron | 35.0% | |
| AAATGAAAAGCTCATCAGTG+GGG | + | tig0030339:8310-8329 | Msa1443140:intron | 35.0% | |
| ATCAGTGGGGAGAAATATTA+GGG | + | tig0030339:8323-8342 | Msa1443140:intron | 35.0% | |
| ! | AACCTAATGCAGCATTTTAG+AGG | + | tig0030339:8428-8447 | Msa1443140:intron | 35.0% |
| !! | TTCCTCTAAAATGCTGCATT+AGG | - | tig0030339:8433-8452 | None:intergenic | 35.0% |
| AGGATATAGCCAAGTTTACA+TGG | + | tig0030339:8498-8517 | Msa1443140:intron | 35.0% | |
| GCCAAGTTTACATGGAAATT+AGG | + | tig0030339:8506-8525 | Msa1443140:intron | 35.0% | |
| CCCTAATTTCCATGTAAACT+TGG | - | tig0030339:8510-8529 | None:intergenic | 35.0% | |
| CCTAATTTCCAATGCAAACT+CGG | - | tig0030339:8536-8555 | None:intergenic | 35.0% | |
| CGAGTTTGCATTGGAAATTA+GGG | + | tig0030339:8534-8553 | Msa1443140:intron | 35.0% | |
| !! | TCCCTCTCATTTGTTGTATT+AGG | - | tig0030339:8858-8877 | None:intergenic | 35.0% |
| CACTTATGAACCTATAGTGT+AGG | - | tig0030339:9013-9032 | None:intergenic | 35.0% | |
| ATGCACTCAATATATTGCAG+TGG | + | tig0030339:9143-9162 | Msa1443140:intron | 35.0% | |
| TCAAGCAGTAACAAGCAAAG+AGG | + | tig0030339:4571-4590 | Msa1443140:CDS | 40.0% | |
| GTAGCTCTCATGTCAATAAC+AGG | - | tig0030339:4688-4707 | None:intergenic | 40.0% | |
| !! | TCCAGCCTTTGAATTTTAGC+AGG | + | tig0030339:5024-5043 | Msa1443140:intron | 40.0% |
| TCCTGCTAAAATTCAAAGGC+TGG | - | tig0030339:5028-5047 | None:intergenic | 40.0% | |
| TCGCTCCTGCTAAAATTCAA+AGG | - | tig0030339:5032-5051 | None:intergenic | 40.0% | |
| ATGTGATCCTATACAGCTTG+AGG | + | tig0030339:5088-5107 | Msa1443140:intron | 40.0% | |
| GTTTAGTGTTTGCAGTTCTG+CGG | + | tig0030339:5112-5131 | Msa1443140:intron | 40.0% | |
| TTTAGTGTTTGCAGTTCTGC+GGG | + | tig0030339:5113-5132 | Msa1443140:intron | 40.0% | |
| ! | TCAGTTGAGCTAGGTTTTAC+GGG | - | tig0030339:5288-5307 | None:intergenic | 40.0% |
| ! | GTCAGTTGAGCTAGGTTTTA+CGG | - | tig0030339:5289-5308 | None:intergenic | 40.0% |
| CTGACAATACCGATGTTGTT+AGG | + | tig0030339:5304-5323 | Msa1443140:intron | 40.0% | |
| CTTGCAGTTGTGTTTAAGTG+TGG | + | tig0030339:5347-5366 | Msa1443140:intron | 40.0% | |
| GTAAAAATATCGATCCCACG+AGG | + | tig0030339:5481-5500 | Msa1443140:intron | 40.0% | |
| GAAGTTAAAAACAGTCCTCG+TGG | - | tig0030339:5499-5518 | None:intergenic | 40.0% | |
| AAACCAAATCTACTGCCTAG+TGG | - | tig0030339:5575-5594 | None:intergenic | 40.0% | |
| ATCCTCTAAGTTCCCCTAAT+TGG | + | tig0030339:5670-5689 | Msa1443140:intron | 40.0% | |
| TACCAATTAGGGGAACTTAG+AGG | - | tig0030339:5675-5694 | None:intergenic | 40.0% | |
| AGGTGTGGTATACCAATTAG+GGG | - | tig0030339:5685-5704 | None:intergenic | 40.0% | |
| ! | GAGAAGAGGGTTCTAATTCA+AGG | - | tig0030339:5765-5784 | None:intergenic | 40.0% |
| CACAGCAACATGTGTCAATT+AGG | + | tig0030339:6047-6066 | Msa1443140:intron | 40.0% | |
| TCATGCAACTTATACTGCTC+TGG | - | tig0030339:6455-6474 | None:intergenic | 40.0% | |
| TCCACTGTTATATTGGAACC+TGG | + | tig0030339:6708-6727 | Msa1443140:intron | 40.0% | |
| ACCAGGTTCCAATATAACAG+TGG | - | tig0030339:6712-6731 | None:intergenic | 40.0% | |
| TTCAGCAACAACAATAGACC+AGG | - | tig0030339:6729-6748 | None:intergenic | 40.0% | |
| ! | AATTAAGGGGGTATGCTTCA+TGG | + | tig0030339:6747-6766 | Msa1443140:intron | 40.0% |
| TCTCATCACCTCCATCTATT+AGG | + | tig0030339:6791-6810 | Msa1443140:intron | 40.0% | |
| ATCACCTCCATCTATTAGGA+AGG | + | tig0030339:6795-6814 | Msa1443140:intron | 40.0% | |
| TCACCTCCATCTATTAGGAA+GGG | + | tig0030339:6796-6815 | Msa1443140:intron | 40.0% | |
| ATTTCATTCAGAGAGGTTGG+AGG | - | tig0030339:6840-6859 | None:intergenic | 40.0% | |
| !! | CTTGCCTTTTTAGGCAACTT+TGG | + | tig0030339:6919-6938 | Msa1443140:intron | 40.0% |
| GTCACCAAAGTTGCCTAAAA+AGG | - | tig0030339:6926-6945 | None:intergenic | 40.0% | |
| TCAAAGTGCAAAAGAAGACG+CGG | - | tig0030339:6972-6991 | None:intergenic | 40.0% | |
| AGGTACTTGTGAACTAGAAG+GGG | + | tig0030339:7351-7370 | Msa1443140:intron | 40.0% | |
| TCTCTCATGTACGAAACTAG+CGG | + | tig0030339:7466-7485 | Msa1443140:intron | 40.0% | |
| AGGGTTGTAACAACTTTGTC+GGG | - | tig0030339:7507-7526 | None:intergenic | 40.0% | |
| CAGGGTTGTAACAACTTTGT+CGG | - | tig0030339:7508-7527 | None:intergenic | 40.0% | |
| TGGTTCAAATCATGCTGAGT+TGG | - | tig0030339:7531-7550 | None:intergenic | 40.0% | |
| GTGGTAAAGACCAACCTAAA+TGG | - | tig0030339:7551-7570 | None:intergenic | 40.0% | |
| !!! | GCTTCTTTTTTTGCTGGAAG+TGG | - | tig0030339:7667-7686 | None:intergenic | 40.0% |
| TAATGCTAGCTGCTGGATTA+AGG | - | tig0030339:7705-7724 | None:intergenic | 40.0% | |
| TGATGATTAATGCTAGCTGC+TGG | - | tig0030339:7712-7731 | None:intergenic | 40.0% | |
| GCAGCTAGCATTAATCATCA+TGG | + | tig0030339:7712-7731 | Msa1443140:intron | 40.0% | |
| GCATTAATCATCATGGTTGG+TGG | + | tig0030339:7719-7738 | Msa1443140:intron | 40.0% | |
| !! | TAATCATCATGGTTGGTGGT+AGG | + | tig0030339:7723-7742 | Msa1443140:intron | 40.0% |
| GCAGGATACTATGATGATTG+CGG | + | tig0030339:7821-7840 | Msa1443140:CDS | 40.0% | |
| TTACCTTTGTCTTCATCGCT+AGG | - | tig0030339:7860-7879 | None:intergenic | 40.0% | |
| CGATGAAGACAAAGGTAACT+GGG | + | tig0030339:7862-7881 | Msa1443140:intron | 40.0% | |
| GATGAAGACAAAGGTAACTG+GGG | + | tig0030339:7863-7882 | Msa1443140:intron | 40.0% | |
| CATATTAATTCTCTGCAGCC+GGG | - | tig0030339:7979-7998 | None:intergenic | 40.0% | |
| GCATATTAATTCTCTGCAGC+CGG | - | tig0030339:7980-7999 | None:intergenic | 40.0% | |
| ! | TGCATACTAGTTTAGAGACC+CGG | + | tig0030339:7997-8016 | Msa1443140:intron | 40.0% |
| CATCAGTGGGGAGAAATATT+AGG | + | tig0030339:8322-8341 | Msa1443140:intron | 40.0% | |
| CCGAGTTTGCATTGGAAATT+AGG | + | tig0030339:8533-8552 | Msa1443140:intron | 40.0% | |
| !!! | GGTGCGATGCATTTTTTAGA+TGG | + | tig0030339:8806-8825 | Msa1443140:intron | 40.0% |
| TCAATATATTGCAGTGGCCT+TGG | + | tig0030339:9149-9168 | Msa1443140:intron | 40.0% | |
| AGCAGTAACAAGCAAAGAGG+AGG | + | tig0030339:4574-4593 | Msa1443140:CDS | 45.0% | |
| AGTAACAAGCAAAGAGGAGG+AGG | + | tig0030339:4577-4596 | Msa1443140:CDS | 45.0% | |
| TGATGAAGACAGAGGCAGTT+GGG | + | tig0030339:4651-4670 | Msa1443140:CDS | 45.0% | |
| TGCAACAACCCATGAGTGTT+TGG | + | tig0030339:4945-4964 | Msa1443140:intron | 45.0% | |
| CTAAACGCCTCAAGCTGTAT+AGG | - | tig0030339:5098-5117 | None:intergenic | 45.0% | |
| TCGGTATTGTCAGTTGAGCT+AGG | - | tig0030339:5297-5316 | None:intergenic | 45.0% | |
| TTGCCACTAGGCAGTAGATT+TGG | + | tig0030339:5569-5588 | Msa1443140:intron | 45.0% | |
| GAGGCTGTAGTTTGAGAAGA+GGG | - | tig0030339:5778-5797 | None:intergenic | 45.0% | |
| TATTAGACCACCCAAGGGAT+TGG | - | tig0030339:5800-5819 | None:intergenic | 45.0% | |
| TAGGTCTAAGTCGAAAGCCA+TGG | + | tig0030339:5911-5930 | Msa1443140:intron | 45.0% | |
| !!! | CGATTTTGAGACATCGGAGA+CGG | - | tig0030339:6206-6225 | None:intergenic | 45.0% |
| ! | AGGAACAGGGGTTACGATTT+TGG | - | tig0030339:6240-6259 | None:intergenic | 45.0% |
| TGCACTCAAACTGAGGAACA+GGG | - | tig0030339:6253-6272 | None:intergenic | 45.0% | |
| TCTCTGTTTGAAGGGAATCG+CGG | - | tig0030339:6338-6357 | None:intergenic | 45.0% | |
| ATCGCGGCAAGACTTGAAAT+TGG | + | tig0030339:6379-6398 | Msa1443140:intron | 45.0% | |
| TGTCCCTTCCTAATAGATGG+AGG | - | tig0030339:6802-6821 | None:intergenic | 45.0% | |
| GCATGTCCCTTCCTAATAGA+TGG | - | tig0030339:6805-6824 | None:intergenic | 45.0% | |
| ! | GCAACTTTGGTGACTTCTCT+AGG | + | tig0030339:6932-6951 | Msa1443140:intron | 45.0% |
| CAAAGTGCAAAAGAAGACGC+GGG | - | tig0030339:6971-6990 | None:intergenic | 45.0% | |
| ! | AAAAGGCACAAGACACACGA+GGG | - | tig0030339:7013-7032 | None:intergenic | 45.0% |
| ! | TTTGTCGGGCACATTTTCTG+TGG | - | tig0030339:7493-7512 | None:intergenic | 45.0% |
| ! | CAAATCATGCTGAGTTGGCA+GGG | - | tig0030339:7526-7545 | None:intergenic | 45.0% |
| ! | TCAAATCATGCTGAGTTGGC+AGG | - | tig0030339:7527-7546 | None:intergenic | 45.0% |
| TTTGCTGGAAGTGGTTGTCT+TGG | - | tig0030339:7658-7677 | None:intergenic | 45.0% | |
| GCGATGAAGACAAAGGTAAC+TGG | + | tig0030339:7861-7880 | Msa1443140:intron | 45.0% | |
| !! | TGAACGCTATCAAGTTGACC+CGG | + | tig0030339:7958-7977 | Msa1443140:intron | 45.0% |
| ! | ATTCGTGCGCTGCATTTTAG+AGG | + | tig0030339:8380-8399 | Msa1443140:intron | 45.0% |
| ! | TTCGTGCGCTGCATTTTAGA+GGG | + | tig0030339:8381-8400 | Msa1443140:intron | 45.0% |
| !!! | ATTGAAAAATTTAAAATAAT+TGG | + | tig0030339:7125-7144 | Msa1443140:intron | 5.0% |
| !! | ATCTTAAAAATAAATATATA+TGG | + | tig0030339:8114-8133 | Msa1443140:intron | 5.0% |
| !!! | ATATAATATCATTTTTTTTA+AGG | + | tig0030339:9074-9093 | Msa1443140:intron | 5.0% |
| AACAAGCAAAGAGGAGGAGG+AGG | + | tig0030339:4580-4599 | Msa1443140:CDS | 50.0% | |
| TGGCCTAGTGATGAAGACAG+AGG | + | tig0030339:4643-4662 | Msa1443140:CDS | 50.0% | |
| CTGCCTCTGTCTTCATCACT+AGG | - | tig0030339:4649-4668 | None:intergenic | 50.0% | |
| GTGATGAAGACAGAGGCAGT+TGG | + | tig0030339:4650-4669 | Msa1443140:CDS | 50.0% | |
| GATGAAGACAGAGGCAGTTG+GGG | + | tig0030339:4652-4671 | Msa1443140:CDS | 50.0% | |
| GCAAGCTCAACCTGATCAGT+AGG | + | tig0030339:4759-4778 | Msa1443140:intron | 50.0% | |
| GTCTCTTCCAGCTTAAGCAG+AGG | + | tig0030339:4982-5001 | Msa1443140:intron | 50.0% | |
| AACTCTGCCTCTGCTTAAGC+TGG | - | tig0030339:4992-5011 | None:intergenic | 50.0% | |
| GGGGAACTTAGAGGATTCGA+AGG | - | tig0030339:5666-5685 | None:intergenic | 50.0% | |
| GGAGGCTGTAGTTTGAGAAG+AGG | - | tig0030339:5779-5798 | None:intergenic | 50.0% | |
| AACTACAGCCTCCAATCCCT+TGG | + | tig0030339:5786-5805 | Msa1443140:intron | 50.0% | |
| ACTACAGCCTCCAATCCCTT+GGG | + | tig0030339:5787-5806 | Msa1443140:intron | 50.0% | |
| AAGTCGAAAGCCATGGTCAG+TGG | + | tig0030339:5918-5937 | Msa1443140:intron | 50.0% | |
| GAACGAATGACCACTGACCA+TGG | - | tig0030339:5931-5950 | None:intergenic | 50.0% | |
| GCACTCAAACTGAGGAACAG+GGG | - | tig0030339:6252-6271 | None:intergenic | 50.0% | |
| CTGCACTCAAACTGAGGAAC+AGG | - | tig0030339:6254-6273 | None:intergenic | 50.0% | |
| GGCAAGACTTGAAATTGGCG+TGG | + | tig0030339:6384-6403 | Msa1443140:intron | 50.0% | |
| CATTCAGAGAGGTTGGAGGA+AGG | - | tig0030339:6836-6855 | None:intergenic | 50.0% | |
| AAAAGAAGACGCGGGTGTGT+AGG | - | tig0030339:6963-6982 | None:intergenic | 50.0% | |
| ! | AAAGGCACAAGACACACGAG+GGG | - | tig0030339:7012-7031 | None:intergenic | 50.0% |
| ! | GAAAAGGCACAAGACACACG+AGG | - | tig0030339:7014-7033 | None:intergenic | 50.0% |
| ATGATTGCGGACGCAAGACA+TGG | + | tig0030339:7834-7853 | Msa1443140:CDS | 50.0% | |
| TGGCCTAGCGATGAAGACAA+AGG | + | tig0030339:7854-7873 | Msa1443140:CDS | 50.0% | |
| TAGGGTAGCCGAGTTTGCAT+TGG | + | tig0030339:8525-8544 | Msa1443140:intron | 50.0% | |
| AAGCAAAGAGGAGGAGGAGG+AGG | + | tig0030339:4583-4602 | Msa1443140:CDS | 55.0% | |
| AGCAAAGAGGAGGAGGAGGA+GGG | + | tig0030339:4584-4603 | Msa1443140:CDS | 55.0% | |
| TAGACCACCCAAGGGATTGG+AGG | - | tig0030339:5797-5816 | None:intergenic | 55.0% | |
| GACATCGGAGACGGCTAGAA+GGG | - | tig0030339:6197-6216 | None:intergenic | 55.0% | |
| AGACATCGGAGACGGCTAGA+AGG | - | tig0030339:6198-6217 | None:intergenic | 55.0% | |
| !! | AGGCGCGACGCGATTTTGAT+GGG | - | tig0030339:6301-6320 | None:intergenic | 55.0% |
| ! | AAGGCGCGACGCGATTTTGA+TGG | - | tig0030339:6302-6321 | None:intergenic | 55.0% |
| ! | TCGCGTCGCGCCTTGTTAAT+TGG | + | tig0030339:6308-6327 | Msa1443140:intron | 55.0% |
| TCGCGGCACGCCAATTAACA+AGG | - | tig0030339:6321-6340 | None:intergenic | 55.0% | |
| GGTCTCATCAGTGACACCCT+TGG | + | tig0030339:6644-6663 | Msa1443140:intron | 55.0% | |
| AAGGCACAAGACACACGAGG+GGG | - | tig0030339:7011-7030 | None:intergenic | 55.0% | |
| ATATCTAACCCGGGCAACGC+CGG | - | tig0030339:8019-8038 | None:intergenic | 55.0% | |
| ACAGCCTCCAATCCCTTGGG+TGG | + | tig0030339:5790-5809 | Msa1443140:intron | 60.0% | |
| TTTAGAGACCCGGCGTTGCC+CGG | + | tig0030339:8007-8026 | Msa1443140:intron | 60.0% | |
| TATCTAACCCGGGCAACGCC+GGG | - | tig0030339:8018-8037 | None:intergenic | 60.0% | |
| TTAGAGACCCGGCGTTGCCC+GGG | + | tig0030339:8008-8027 | Msa1443140:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030339 | gene | 4550 | 9362 | 4550 | ID=Msa1443140;Name=Msa1443140 |
| tig0030339 | mRNA | 4550 | 9362 | 4550 | ID=Msa1443140-mRNA-1;Parent=Msa1443140;Name=Msa1443140-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|0.66|0.5|0|3|0|121 |
| tig0030339 | exon | 4550 | 4776 | 4550 | ID=Msa1443140-mRNA-1:exon:13751;Parent=Msa1443140-mRNA-1 |
| tig0030339 | exon | 7745 | 7875 | 7745 | ID=Msa1443140-mRNA-1:exon:13752;Parent=Msa1443140-mRNA-1 |
| tig0030339 | exon | 9358 | 9362 | 9358 | ID=Msa1443140-mRNA-1:exon:13753;Parent=Msa1443140-mRNA-1 |
| tig0030339 | CDS | 4550 | 4776 | 4550 | ID=Msa1443140-mRNA-1:cds;Parent=Msa1443140-mRNA-1 |
| tig0030339 | CDS | 7745 | 7875 | 7745 | ID=Msa1443140-mRNA-1:cds;Parent=Msa1443140-mRNA-1 |
| tig0030339 | CDS | 9358 | 9362 | 9358 | ID=Msa1443140-mRNA-1:cds;Parent=Msa1443140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
