Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0019640 | sp|Q940Q1|PLY1_ARATH | 83.871 | 403 | 59 | 2 | 44 | 442 | 29 | 429 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019640 | Msa0019650 | 0.925763 | 1.180778e-90 | -8.615850e-47 |
| Msa0019640 | Msa0034280 | 0.809874 | 1.525246e-50 | -8.615850e-47 |
| Msa0019640 | Msa0066160 | 0.929613 | 5.406787e-93 | -8.615850e-47 |
| Msa0019640 | Msa0081350 | 0.830723 | 2.501384e-55 | -8.615850e-47 |
| Msa0019640 | Msa0081490 | 0.835420 | 1.695210e-56 | -8.615850e-47 |
| Msa0019640 | Msa0157630 | 0.895619 | 8.070718e-76 | -8.615850e-47 |
| Msa0019640 | Msa0173650 | 0.818107 | 2.329605e-52 | -8.615850e-47 |
| Msa0019640 | Msa1208550 | 0.802230 | 6.191620e-49 | -8.615850e-47 |
| Msa0019640 | Msa1208670 | 0.820964 | 5.191457e-53 | -8.615850e-47 |
| Msa0019640 | Msa1258860 | 0.833307 | 5.749189e-56 | -8.615850e-47 |
| Msa0019640 | Msa1330130 | 0.811845 | 5.711094e-51 | -8.615850e-47 |
| Msa0019640 | Msa1369810 | 0.832169 | 1.102222e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0019640 | MtrunA17_Chr1g0169731 | 96.790 | 405 | 13 | 0 | 38 | 442 | 46 | 450 | 0.0 | 825 |
| Msa0019640 | MtrunA17_Chr7g0237761 | 80.402 | 398 | 77 | 1 | 45 | 442 | 48 | 444 | 0.0 | 669 |
| Msa0019640 | MtrunA17_Chr4g0058051 | 73.298 | 382 | 101 | 1 | 62 | 442 | 26 | 407 | 0.0 | 585 |
| Msa0019640 | MtrunA17_Chr6g0458201 | 68.668 | 383 | 120 | 0 | 60 | 442 | 22 | 404 | 0.0 | 585 |
| Msa0019640 | MtrunA17_Chr3g0116521 | 72.351 | 387 | 107 | 0 | 56 | 442 | 20 | 406 | 0.0 | 566 |
| Msa0019640 | MtrunA17_Chr3g0123321 | 68.831 | 385 | 117 | 2 | 58 | 442 | 22 | 403 | 0.0 | 527 |
| Msa0019640 | MtrunA17_Chr1g0210321 | 61.013 | 395 | 151 | 1 | 47 | 438 | 17 | 411 | 0.0 | 520 |
| Msa0019640 | MtrunA17_Chr7g0264891 | 64.628 | 376 | 132 | 1 | 64 | 438 | 35 | 410 | 1.18e-177 | 504 |
| Msa0019640 | MtrunA17_Chr1g0180381 | 60.733 | 382 | 143 | 1 | 64 | 438 | 34 | 415 | 9.99e-177 | 503 |
| Msa0019640 | MtrunA17_Chr3g0123331 | 63.708 | 383 | 136 | 3 | 62 | 442 | 25 | 406 | 1.17e-174 | 495 |
| Msa0019640 | MtrunA17_Chr4g0060211 | 56.171 | 397 | 165 | 4 | 53 | 442 | 40 | 434 | 3.58e-164 | 469 |
| Msa0019640 | MtrunA17_Chr5g0416061 | 55.639 | 399 | 168 | 3 | 53 | 442 | 51 | 449 | 2.25e-158 | 455 |
| Msa0019640 | MtrunA17_Chr8g0362561 | 52.567 | 409 | 176 | 5 | 51 | 442 | 48 | 455 | 1.53e-151 | 438 |
| Msa0019640 | MtrunA17_Chr6g0452861 | 51.869 | 428 | 189 | 4 | 28 | 442 | 30 | 453 | 1.63e-149 | 432 |
| Msa0019640 | MtrunA17_Chr4g0075231 | 58.857 | 350 | 140 | 3 | 94 | 442 | 39 | 385 | 1.03e-147 | 426 |
| Msa0019640 | MtrunA17_Chr5g0416041 | 54.455 | 404 | 173 | 4 | 49 | 442 | 47 | 449 | 2.28e-147 | 427 |
| Msa0019640 | MtrunA17_Chr7g0216581 | 51.559 | 417 | 180 | 3 | 48 | 442 | 35 | 451 | 1.22e-144 | 420 |
| Msa0019640 | MtrunA17_Chr2g0288921 | 55.285 | 369 | 156 | 5 | 75 | 442 | 49 | 409 | 2.27e-144 | 418 |
| Msa0019640 | MtrunA17_Chr8g0373761 | 44.225 | 355 | 188 | 7 | 94 | 442 | 42 | 392 | 8.00e-98 | 298 |
| Msa0019640 | MtrunA17_Chr3g0089181 | 43.944 | 355 | 189 | 7 | 94 | 442 | 23 | 373 | 1.26e-96 | 295 |
| Msa0019640 | MtrunA17_Chr8g0373721 | 43.380 | 355 | 191 | 7 | 94 | 442 | 42 | 392 | 1.06e-95 | 293 |
| Msa0019640 | MtrunA17_Chr8g0373731 | 44.507 | 355 | 187 | 7 | 94 | 442 | 42 | 392 | 6.16e-91 | 281 |
| Msa0019640 | MtrunA17_Chr8g0373701 | 42.254 | 355 | 195 | 7 | 94 | 442 | 97 | 447 | 8.00e-91 | 282 |
| Msa0019640 | MtrunA17_Chr5g0403481 | 43.380 | 355 | 191 | 7 | 94 | 442 | 41 | 391 | 3.41e-87 | 271 |
| Msa0019640 | MtrunA17_Chr5g0403461 | 43.380 | 355 | 191 | 7 | 94 | 442 | 41 | 391 | 3.41e-87 | 271 |
| Msa0019640 | MtrunA17_Chr5g0403491 | 43.380 | 355 | 191 | 7 | 94 | 442 | 41 | 391 | 3.41e-87 | 271 |
| Msa0019640 | MtrunA17_Chr5g0403391 | 41.972 | 355 | 196 | 7 | 94 | 442 | 41 | 391 | 3.38e-86 | 268 |
| Msa0019640 | MtrunA17_Chr5g0414541 | 41.972 | 355 | 196 | 7 | 94 | 442 | 41 | 391 | 6.88e-86 | 268 |
| Msa0019640 | MtrunA17_Chr4g0031851 | 44.444 | 315 | 167 | 6 | 128 | 438 | 23 | 333 | 7.44e-86 | 267 |
| Msa0019640 | MtrunA17_Chr5g0403411 | 42.254 | 355 | 195 | 7 | 94 | 442 | 41 | 391 | 5.14e-84 | 263 |
| Msa0019640 | MtrunA17_Chr1g0183941 | 42.910 | 268 | 149 | 3 | 169 | 434 | 1 | 266 | 6.36e-70 | 222 |
| Msa0019640 | MtrunA17_Chr3g0113551 | 55.932 | 177 | 62 | 2 | 188 | 362 | 122 | 284 | 6.59e-59 | 195 |
| Msa0019640 | MtrunA17_Chr6g0481851 | 37.801 | 291 | 123 | 6 | 127 | 415 | 6 | 240 | 1.66e-52 | 176 |
| Msa0019640 | MtrunA17_Chr2g0288901 | 53.205 | 156 | 68 | 4 | 288 | 442 | 5 | 156 | 2.34e-49 | 165 |
| Msa0019640 | MtrunA17_Chr2g0288911 | 54.918 | 122 | 54 | 1 | 169 | 289 | 1 | 122 | 1.80e-40 | 140 |
| Msa0019640 | MtrunA17_Chr1g0212931 | 35.862 | 290 | 160 | 7 | 109 | 397 | 11 | 275 | 2.06e-38 | 141 |
| Msa0019640 | MtrunA17_Chr1g0182021 | 37.716 | 289 | 152 | 8 | 111 | 397 | 62 | 324 | 1.98e-37 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0019640 | AT1G04680.1 | 83.871 | 403 | 59 | 2 | 44 | 442 | 29 | 429 | 0.0 | 696 |
| Msa0019640 | AT4G13710.1 | 80.964 | 394 | 73 | 1 | 49 | 442 | 79 | 470 | 0.0 | 692 |
| Msa0019640 | AT4G13710.2 | 80.964 | 394 | 73 | 1 | 49 | 442 | 60 | 451 | 0.0 | 690 |
| Msa0019640 | AT3G07010.1 | 82.723 | 382 | 66 | 0 | 61 | 442 | 35 | 416 | 0.0 | 666 |
| Msa0019640 | AT3G07010.2 | 81.698 | 377 | 69 | 0 | 66 | 442 | 7 | 383 | 0.0 | 645 |
| Msa0019640 | AT3G24670.1 | 80.628 | 382 | 74 | 0 | 61 | 442 | 59 | 440 | 0.0 | 643 |
| Msa0019640 | AT5G48900.1 | 80.628 | 382 | 74 | 0 | 61 | 442 | 36 | 417 | 0.0 | 623 |
| Msa0019640 | AT4G13210.2 | 79.373 | 383 | 78 | 1 | 61 | 442 | 56 | 438 | 0.0 | 616 |
| Msa0019640 | AT4G13210.1 | 79.373 | 383 | 78 | 1 | 61 | 442 | 19 | 401 | 0.0 | 613 |
| Msa0019640 | AT3G24230.1 | 72.379 | 391 | 104 | 2 | 55 | 442 | 62 | 451 | 0.0 | 597 |
| Msa0019640 | AT5G63180.1 | 71.465 | 389 | 109 | 1 | 56 | 442 | 44 | 432 | 0.0 | 585 |
| Msa0019640 | AT1G67750.1 | 72.441 | 381 | 103 | 1 | 62 | 442 | 30 | 408 | 0.0 | 575 |
| Msa0019640 | AT4G24780.2 | 71.354 | 384 | 109 | 1 | 60 | 442 | 25 | 408 | 0.0 | 565 |
| Msa0019640 | AT4G24780.1 | 71.354 | 384 | 109 | 1 | 60 | 442 | 25 | 408 | 0.0 | 565 |
| Msa0019640 | AT3G27400.2 | 66.929 | 381 | 125 | 1 | 62 | 442 | 37 | 416 | 0.0 | 545 |
| Msa0019640 | AT3G27400.1 | 66.929 | 381 | 125 | 1 | 62 | 442 | 33 | 412 | 0.0 | 545 |
| Msa0019640 | AT3G53190.1 | 61.353 | 414 | 150 | 2 | 32 | 435 | 2 | 415 | 0.0 | 515 |
| Msa0019640 | AT5G04310.3 | 60.724 | 387 | 139 | 1 | 65 | 438 | 53 | 439 | 1.13e-174 | 498 |
| Msa0019640 | AT5G04310.1 | 60.668 | 389 | 140 | 1 | 65 | 440 | 53 | 441 | 4.81e-174 | 498 |
| Msa0019640 | AT5G04310.2 | 60.668 | 389 | 140 | 1 | 65 | 440 | 53 | 441 | 4.81e-174 | 498 |
| Msa0019640 | AT3G54920.1 | 59.288 | 393 | 136 | 4 | 64 | 441 | 36 | 419 | 7.55e-170 | 486 |
| Msa0019640 | AT5G55720.1 | 56.623 | 385 | 151 | 6 | 61 | 442 | 21 | 392 | 1.38e-155 | 446 |
| Msa0019640 | AT1G14420.1 | 56.546 | 359 | 150 | 1 | 90 | 442 | 101 | 459 | 1.02e-153 | 444 |
| Msa0019640 | AT3G01270.1 | 52.732 | 421 | 183 | 4 | 37 | 442 | 56 | 475 | 1.55e-152 | 441 |
| Msa0019640 | AT5G15110.1 | 57.746 | 355 | 148 | 2 | 90 | 442 | 118 | 472 | 3.93e-151 | 438 |
| Msa0019640 | AT1G11920.1 | 58.286 | 350 | 143 | 3 | 94 | 442 | 37 | 384 | 3.93e-148 | 427 |
| Msa0019640 | AT2G02720.1 | 53.784 | 370 | 162 | 2 | 79 | 442 | 89 | 455 | 9.96e-148 | 428 |
| Msa0019640 | AT4G22080.1 | 55.143 | 350 | 153 | 3 | 94 | 442 | 47 | 393 | 1.87e-139 | 405 |
| Msa0019640 | AT4G22090.1 | 54.000 | 350 | 157 | 3 | 94 | 442 | 47 | 393 | 1.61e-138 | 403 |
| Msa0019640 | AT1G30350.1 | 51.862 | 349 | 152 | 3 | 94 | 442 | 36 | 368 | 1.91e-127 | 374 |
| Msa0019640 | AT5G09280.1 | 46.124 | 258 | 136 | 3 | 127 | 383 | 6 | 261 | 5.62e-77 | 242 |
| Msa0019640 | AT3G09540.1 | 36.700 | 297 | 160 | 7 | 111 | 405 | 61 | 331 | 4.60e-41 | 150 |
| Msa0019640 | AT3G55140.1 | 35.495 | 293 | 155 | 7 | 114 | 397 | 9 | 276 | 1.55e-39 | 145 |
| Msa0019640 | AT3G09540.3 | 36.364 | 297 | 157 | 8 | 111 | 405 | 61 | 327 | 5.60e-39 | 144 |
| Msa0019640 | AT3G09540.2 | 35.366 | 246 | 133 | 5 | 111 | 355 | 61 | 281 | 6.77e-33 | 126 |
| Msa0019640 | AT3G55140.2 | 34.661 | 251 | 143 | 5 | 148 | 397 | 22 | 252 | 4.07e-32 | 124 |
Find 128 sgRNAs with CRISPR-Local
Find 604 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTGGTTCAAGTCATATT+TGG | 0.142280 | 1_1:-34285217 | Msa0019640:CDS |
| ACCATAGCTTATAACCATTT+TGG | 0.163048 | 1_1:-34284876 | Msa0019640:CDS |
| TTTATCTATTATGGTGATTA+TGG | 0.170474 | 1_1:-34283362 | Msa0019640:three_prime_UTR |
| GGTGATGCTATTTCTATATT+TGG | 0.198003 | 1_1:-34285233 | Msa0019640:CDS |
| TGGAAACACTTTATCTATTA+TGG | 0.204756 | 1_1:-34283371 | Msa0019640:three_prime_UTR |
| ACCATAGAAGCCACCTCTTT+TGG | 0.210359 | 1_1:+34286979 | None:intergenic |
| TTCTTCTTTCAGTGCTGTTC+TGG | 0.228266 | 1_1:+34285726 | None:intergenic |
| GTTACTAATGTTATCATTCA+TGG | 0.282130 | 1_1:-34285341 | Msa0019640:CDS |
| AGAAGCTCAGAAACACATTT+TGG | 0.287371 | 1_1:-34285275 | Msa0019640:CDS |
| AAAATGGTTGTTTGTTTCCT+TGG | 0.299327 | 1_1:+34283904 | None:intergenic |
| GTTCCTGGCCTAGGGTTAAC+AGG | 0.299458 | 1_1:+34285527 | None:intergenic |
| AACAGTTTCAAGACAATTGA+TGG | 0.315590 | 1_1:-34285416 | Msa0019640:CDS |
| TCCAAAAGAGGTGGCTTCTA+TGG | 0.332157 | 1_1:-34286980 | Msa0019640:CDS |
| GAATTATTAATGTACCTCTT+TGG | 0.336849 | 1_1:+34284357 | None:intergenic |
| ACGGCGTGGCGCAAAGTTCC+TGG | 0.337097 | 1_1:+34285512 | None:intergenic |
| ATTTGGTTCAAGTCATATTT+GGG | 0.339157 | 1_1:-34285216 | Msa0019640:CDS |
| GAGGGAGACTTATATCTAAA+TGG | 0.348297 | 1_1:-34284077 | Msa0019640:CDS |
| GAATAAGACCCTCTCCAAAA+TGG | 0.350883 | 1_1:+34284862 | None:intergenic |
| CAACGCCAGCAATCGTCAAT+AGG | 0.360103 | 1_1:+34285671 | None:intergenic |
| TGGCGCAAAGTTCCTGGCCT+AGG | 0.369904 | 1_1:+34285518 | None:intergenic |
| GCAGACTGTGGTATTGGTTT+CGG | 0.382152 | 1_1:-34285614 | Msa0019640:CDS |
| CAATCCAAAGTGGTCTATCT+TGG | 0.383246 | 1_1:+34285486 | None:intergenic |
| TAATGTACCTCTTTGGCAAA+AGG | 0.383561 | 1_1:+34284364 | None:intergenic |
| CGTCTAGCAGACTGTGGTAT+TGG | 0.384506 | 1_1:-34285620 | Msa0019640:CDS |
| TGCACCCTCCATTAGCAATA+TGG | 0.385546 | 1_1:+34285378 | None:intergenic |
| TTACCCTGGCTGTTGATTGT+GGG | 0.393501 | 1_1:+34284409 | None:intergenic |
| GCTAATGTCCATATTGCTAA+TGG | 0.398204 | 1_1:-34285386 | Msa0019640:CDS |
| AAGTTGAGCAGCTAAGGTTT+TGG | 0.400891 | 1_1:+34283728 | None:intergenic |
| CTCAGTGGAAAGGTTGGAAT+TGG | 0.405483 | 1_1:-34284106 | Msa0019640:CDS |
| CAAATTCAGGTGATTCTGTT+GGG | 0.414810 | 1_1:-34284939 | Msa0019640:intron |
| AGCACTGAAAGAAGAAATCT+TGG | 0.417681 | 1_1:-34285719 | Msa0019640:CDS |
| AATGTACCTCTTTGGCAAAA+GGG | 0.419381 | 1_1:+34284365 | None:intergenic |
| TTACATTGTTTGTTTGCAGC+TGG | 0.422893 | 1_1:+34283702 | None:intergenic |
| TCTCTCTCTCATTGTGCTGA+TGG | 0.425664 | 1_1:-34285182 | Msa0019640:CDS |
| TGGTCTTGTTGATGCTGTCA+TGG | 0.427022 | 1_1:-34285162 | Msa0019640:CDS |
| TCTTTGGCAAAAGGGTTAGT+AGG | 0.429895 | 1_1:+34284373 | None:intergenic |
| GCTGGCGTTGTGACCGCAAT+TGG | 0.430094 | 1_1:-34285658 | Msa0019640:CDS |
| TGGAGCAAGTTGAGCAGCTA+AGG | 0.431138 | 1_1:+34283722 | None:intergenic |
| GGTGCATATTTCACAGCATC+TGG | 0.432533 | 1_1:-34284056 | Msa0019640:CDS |
| ACCGCAATTGGCAACAAAAC+AGG | 0.433219 | 1_1:-34285646 | Msa0019640:CDS |
| TACAGACGGCATGTCTTTAA+CGG | 0.436883 | 1_1:-34294027 | None:intergenic |
| GTTACCCTGGCTGTTGATTG+TGG | 0.438056 | 1_1:+34284408 | None:intergenic |
| TCCAAAATGGTTATAAGCTA+TGG | 0.441652 | 1_1:+34284875 | None:intergenic |
| GTAACCCTATTGACGATTGC+TGG | 0.445362 | 1_1:-34285676 | Msa0019640:CDS |
| GGGAGACATGATTTGACATA+TGG | 0.446783 | 1_1:+34283574 | None:intergenic |
| AACAAACAATGTAAAATTGT+AGG | 0.454667 | 1_1:-34283693 | Msa0019640:three_prime_UTR |
| CACTGGGAAATGTATGCTAT+TGG | 0.455890 | 1_1:-34284445 | Msa0019640:CDS |
| AAGGACTGAACAAGTGTGTA+AGG | 0.458642 | 1_1:+34283553 | None:intergenic |
| AACGCCAGCAATCGTCAATA+GGG | 0.460377 | 1_1:+34285672 | None:intergenic |
| GCAATCGTCAATAGGGTTAC+CGG | 0.463247 | 1_1:+34285679 | None:intergenic |
| CCTATAAAATAAAACTGAAA+AGG | 0.470003 | 1_1:+34283534 | None:intergenic |
| GGTTGGAATTGGAGATCAGA+GGG | 0.484644 | 1_1:-34284095 | Msa0019640:CDS |
| GCAAATTCAGGTGATTCTGT+TGG | 0.486126 | 1_1:-34284940 | Msa0019640:intron |
| GGTCTTGTTGATGCTGTCAT+GGG | 0.488460 | 1_1:-34285161 | Msa0019640:CDS |
| TATGCAAGAGCCTCTAGCTT+AGG | 0.491604 | 1_1:-34284014 | Msa0019640:CDS |
| CTGAAACTCAGTGGAAAGGT+TGG | 0.493357 | 1_1:-34284112 | Msa0019640:CDS |
| TTAACAGGGTCATCATCTCT+TGG | 0.494071 | 1_1:+34285542 | None:intergenic |
| TAACAGGGTCATCATCTCTT+GGG | 0.494726 | 1_1:+34285543 | None:intergenic |
| ATTAACTCAAACAAAACAAA+AGG | 0.496878 | 1_1:+34283433 | None:intergenic |
| GTAAAATTATATATATAACT+TGG | 0.499747 | 1_1:+34283494 | None:intergenic |
| ACTTCAAATGCTGGTGCACT+AGG | 0.501916 | 1_1:-34283960 | Msa0019640:CDS |
| GGCGCAAAGTTCCTGGCCTA+GGG | 0.504412 | 1_1:+34285519 | None:intergenic |
| TATTTCACAGCATCTGGTGC+TGG | 0.506003 | 1_1:-34284050 | Msa0019640:CDS |
| CATCTGCTTGTCTCTAGTGT+AGG | 0.509712 | 1_1:+34284905 | None:intergenic |
| ATTCATGATTGTAAACCTAC+TGG | 0.513692 | 1_1:-34285311 | Msa0019640:CDS |
| AAGAAAGTACCTCATTGTGA+TGG | 0.515575 | 1_1:+34285102 | None:intergenic |
| TTCAAGACAATTGATGGAAG+AGG | 0.516013 | 1_1:-34285410 | Msa0019640:CDS |
| CCTCATTGTGATGGGTTAAG+TGG | 0.516813 | 1_1:+34285111 | None:intergenic |
| AGGAGCAAAATCTTCTGCTA+TGG | 0.519058 | 1_1:-34283994 | Msa0019640:CDS |
| TGCATATGAATTGGTGGGTA+AGG | 0.519868 | 1_1:+34283604 | None:intergenic |
| TTCGGTAGAAATGCCATTGG+TGG | 0.520968 | 1_1:-34285596 | Msa0019640:CDS |
| CAATGTAAAATTGTAGGAGC+AGG | 0.523001 | 1_1:-34283687 | Msa0019640:three_prime_UTR |
| TGTACACTTGTCAAGAATGC+AGG | 0.525049 | 1_1:+34283791 | None:intergenic |
| TGAACAATGACTATACTCAC+TGG | 0.529860 | 1_1:-34284462 | Msa0019640:CDS |
| GGTGCACTAGGCTGCAAAAG+AGG | 0.532056 | 1_1:-34283948 | Msa0019640:CDS |
| TACCCTGGCTGTTGATTGTG+GGG | 0.533707 | 1_1:+34284410 | None:intergenic |
| AATAGGGTTACCGGTTCCAC+AGG | 0.536008 | 1_1:+34285688 | None:intergenic |
| TATGAATTGGTGGGTAAGGT+TGG | 0.545443 | 1_1:+34283608 | None:intergenic |
| GACCCTGTTAACCCTAGGCC+AGG | 0.545842 | 1_1:-34285530 | Msa0019640:CDS |
| AATGCCATTGGTGGTCGCGA+CGG | 0.549147 | 1_1:-34285587 | Msa0019640:CDS |
| GAGCATTGTATCTGTTACCC+TGG | 0.553817 | 1_1:+34284395 | None:intergenic |
| AAAATATGCATATGAATTGG+TGG | 0.554430 | 1_1:+34283598 | None:intergenic |
| TAACCCCACAATCAACAGCC+AGG | 0.560024 | 1_1:-34284413 | Msa0019640:CDS |
| AAGTGGTCTATCTTGGATAA+CGG | 0.560058 | 1_1:+34285493 | None:intergenic |
| CTTTCCGTCGCGACCACCAA+TGG | 0.563753 | 1_1:+34285583 | None:intergenic |
| TGATTGTCAAAGTTGAGTAA+TGG | 0.564943 | 1_1:-34283391 | Msa0019640:three_prime_UTR |
| TGGGAAATGTATGCTATTGG+TGG | 0.565884 | 1_1:-34284442 | Msa0019640:CDS |
| AGAAAGTACCTCATTGTGAT+GGG | 0.566374 | 1_1:+34285103 | None:intergenic |
| TGCTGTAGCTAATCCAAAAG+AGG | 0.575008 | 1_1:-34286992 | Msa0019640:CDS |
| GCAAAATCTTCTGCTATGGT+TGG | 0.575324 | 1_1:-34283990 | Msa0019640:CDS |
| GGTTGGAGGACTATGGCTGA+TGG | 0.575833 | 1_1:-34285254 | Msa0019640:CDS |
| TTATCCAAGATAGACCACTT+TGG | 0.576717 | 1_1:-34285490 | Msa0019640:CDS |
| AAATATGCATATGAATTGGT+GGG | 0.578801 | 1_1:+34283599 | None:intergenic |
| GGTTTCGGTAGAAATGCCAT+TGG | 0.583758 | 1_1:-34285599 | Msa0019640:CDS |
| AGGTTGGAATTGGAGATCAG+AGG | 0.585690 | 1_1:-34284096 | Msa0019640:CDS |
| AATGTCCATATTGCTAATGG+AGG | 0.587006 | 1_1:-34285383 | Msa0019640:CDS |
| TAAACCTACTGGTAATGCTA+TGG | 0.588561 | 1_1:-34285300 | Msa0019640:CDS |
| ATGAGGTGTGAAGAACCAAA+AGG | 0.592720 | 1_1:+34283638 | None:intergenic |
| AAACTGGGCCAAATTCGCTA+TGG | 0.597168 | 1_1:+34293890 | None:intergenic |
| CTCTTGAACACAATCCAAAG+TGG | 0.600113 | 1_1:+34285476 | None:intergenic |
| GAACAATGACTATACTCACT+GGG | 0.601357 | 1_1:-34284461 | Msa0019640:CDS |
| ATGATGACCCTGTTAACCCT+AGG | 0.614980 | 1_1:-34285535 | Msa0019640:CDS |
| GCACACCTACTTGTTGTGTG+AGG | 0.615113 | 1_1:-34293934 | Msa0019640:CDS |
| TTGGCAGGTAACTAAGAGAG+TGG | 0.615750 | 1_1:-34284141 | Msa0019640:intron |
| GACGGCATGTCTTTAACGGT+AGG | 0.617315 | 1_1:-34294023 | None:intergenic |
| ACAGCTGAAACTCAGTGGAA+AGG | 0.623514 | 1_1:-34284116 | Msa0019640:CDS |
| CTCACCATAGCATTACCAGT+AGG | 0.624915 | 1_1:+34285296 | None:intergenic |
| ACGGCATGTCTTTAACGGTA+GGG | 0.625257 | 1_1:-34294022 | None:intergenic |
| GGTACAATGACTTCAAATGC+TGG | 0.631889 | 1_1:-34283969 | Msa0019640:CDS |
| GATTGTGTTCAAGAGAGACA+TGG | 0.632108 | 1_1:-34285468 | Msa0019640:CDS |
| GTCTATCTTGGATAACGGCG+TGG | 0.642737 | 1_1:+34285498 | None:intergenic |
| TTCCTGGCCTAGGGTTAACA+GGG | 0.642833 | 1_1:+34285528 | None:intergenic |
| ATGTCCATATTGCTAATGGA+GGG | 0.644127 | 1_1:-34285382 | Msa0019640:CDS |
| TCAAGAGCCTCAAAATCCCA+AGG | 0.645444 | 1_1:+34293966 | None:intergenic |
| AACCCCACAATCAACAGCCA+GGG | 0.647630 | 1_1:-34284412 | Msa0019640:CDS |
| CACACCTACTTGTTGTGTGA+GGG | 0.650021 | 1_1:-34293933 | Msa0019640:CDS |
| TATAGTCATTGTTCACCACA+TGG | 0.650209 | 1_1:+34284470 | None:intergenic |
| AGGACTGAACAAGTGTGTAA+GGG | 0.651399 | 1_1:+34283554 | None:intergenic |
| TGGAAACAGCTGAAACTCAG+TGG | 0.652873 | 1_1:-34284121 | Msa0019640:CDS |
| ACAAGTAGGTGTGCTCGCAA+CGG | 0.653221 | 1_1:+34293943 | None:intergenic |
| GTAAGGTTGGTGATGAAATG+AGG | 0.658988 | 1_1:+34283621 | None:intergenic |
| CCACTTAACCCATCACAATG+AGG | 0.672601 | 1_1:-34285111 | Msa0019640:intron |
| TTGACAATGAAAGAAAACAA+AGG | 0.674048 | 1_1:+34283280 | None:intergenic |
| TGTAGCTAATCCAAAAGAGG+TGG | 0.676653 | 1_1:-34286989 | Msa0019640:CDS |
| CACACCCTCACACAACAAGT+AGG | 0.678614 | 1_1:+34293929 | None:intergenic |
| GTCTTATTCAGAGAATGCCA+CGG | 0.679076 | 1_1:-34284848 | Msa0019640:intron |
| TAGACATGGTTATTTCCATG+TGG | 0.715260 | 1_1:-34284485 | Msa0019640:CDS |
| AGGAAGCGTCTAGCAGACTG+TGG | 0.718605 | 1_1:-34285626 | Msa0019640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATAATTTTAATTTT+AGG | + | chr1_1:34285346-34285365 | None:intergenic | 0.0% |
| !! | AAATTAAAATTAAAAATTAA+GGG | + | chr1_1:34286147-34286166 | None:intergenic | 0.0% |
| !! | AAAATTAAAATTAAAAATTA+AGG | + | chr1_1:34286148-34286167 | None:intergenic | 0.0% |
| !!! | TTTATTTTTAATTTAATTTT+GGG | + | chr1_1:34288724-34288743 | None:intergenic | 0.0% |
| !!! | ATTTATTTTTAATTTAATTT+TGG | + | chr1_1:34288725-34288744 | None:intergenic | 0.0% |
| !!! | TTTAAATTTTAAAATATTAA+TGG | + | chr1_1:34289275-34289294 | None:intergenic | 0.0% |
| !! | GATCAATATATTATAAATTT+GGG | + | chr1_1:34284130-34284149 | None:intergenic | 10.0% |
| !!! | ATTTTAGGTTTTTTTATTTA+CGG | - | chr1_1:34284259-34284278 | Msa0019640:intron | 10.0% |
| !!! | TTTTATCTATACTATATATA+TGG | - | chr1_1:34286538-34286557 | Msa0019640:intron | 10.0% |
| !! | GTTATTTATATTAAAAATTG+AGG | + | chr1_1:34286614-34286633 | None:intergenic | 10.0% |
| !! | ATATATAAATATACATATAG+GGG | - | chr1_1:34286734-34286753 | Msa0019640:intron | 10.0% |
| !! | CCTATATATATATATATATA+TGG | + | chr1_1:34287044-34287063 | None:intergenic | 10.0% |
| !! | CCATATATATATATATATAT+AGG | - | chr1_1:34287041-34287060 | Msa0019640:intron | 10.0% |
| !! | TATGTATATATGTATATATA+GGG | + | chr1_1:34287500-34287519 | None:intergenic | 10.0% |
| !! | ATATGTATATATGTATATAT+AGG | + | chr1_1:34287501-34287520 | None:intergenic | 10.0% |
| !!! | TTTTCTATAATAAAAATTGT+TGG | - | chr1_1:34287685-34287704 | Msa0019640:intron | 10.0% |
| !! | ATAAATAATCATGTTTAATT+TGG | - | chr1_1:34287718-34287737 | Msa0019640:intron | 10.0% |
| !! | AAAATAATAATGTTAAAGAT+TGG | - | chr1_1:34288070-34288089 | Msa0019640:intron | 10.0% |
| !! | CATTAAAAATTAAATATCAA+TGG | - | chr1_1:34289927-34289946 | Msa0019640:intron | 10.0% |
| !! | ATGTGAAATAAAATAAAATA+AGG | + | chr1_1:34290029-34290048 | None:intergenic | 10.0% |
| !! | GAATTTAAAAATATTCAATT+TGG | + | chr1_1:34292624-34292643 | None:intergenic | 10.0% |
| !! | GTAAAATTATATATATAACT+TGG | + | chr1_1:34293698-34293717 | None:intergenic | 10.0% |
| !! | ATATTATTTGTAATCCTATT+AGG | + | chr1_1:34283380-34283399 | None:intergenic | 15.0% |
| !! | TAAATAAATACAATGATTTG+CGG | + | chr1_1:34283657-34283676 | None:intergenic | 15.0% |
| !! | GGATCAATATATTATAAATT+TGG | + | chr1_1:34284131-34284150 | None:intergenic | 15.0% |
| !! | GTAAATAAAAAAACCTAAAA+TGG | + | chr1_1:34284260-34284279 | None:intergenic | 15.0% |
| !! | TATATTACATAACATACAAA+AGG | - | chr1_1:34284320-34284339 | Msa0019640:intron | 15.0% |
| !! | TTGATTATTCCTTAAAAAAA+GGG | + | chr1_1:34284856-34284875 | None:intergenic | 15.0% |
| !! | ATTGATTATTCCTTAAAAAA+AGG | + | chr1_1:34284857-34284876 | None:intergenic | 15.0% |
| !! | ATATACTATAAGTATATTGT+TGG | - | chr1_1:34284913-34284932 | Msa0019640:CDS | 15.0% |
| !! | GCTAATATAATATTGTAAAT+AGG | - | chr1_1:34285391-34285410 | Msa0019640:CDS | 15.0% |
| !!! | ATAGTTTTATTAAGAACTTT+AGG | + | chr1_1:34285594-34285613 | None:intergenic | 15.0% |
| !! | GTGAAAGTAATAAAATAATA+TGG | + | chr1_1:34286488-34286507 | None:intergenic | 15.0% |
| !! | AAAGTTTAATAGAGATAAAA+GGG | + | chr1_1:34287178-34287197 | None:intergenic | 15.0% |
| !! | TAAAGTTTAATAGAGATAAA+AGG | + | chr1_1:34287179-34287198 | None:intergenic | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | - | chr1_1:34287241-34287260 | Msa0019640:intron | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | - | chr1_1:34287242-34287261 | Msa0019640:intron | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | - | chr1_1:34287241-34287260 | Msa0019640:intron | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | - | chr1_1:34287242-34287261 | Msa0019640:intron | 15.0% |
| !! | ATGTATATATGTATATATAG+GGG | + | chr1_1:34287499-34287518 | None:intergenic | 15.0% |
| !! | TTATAGAAAAAGTTGTTTAA+GGG | + | chr1_1:34287675-34287694 | None:intergenic | 15.0% |
| !! | ATTATAGAAAAAGTTGTTTA+AGG | + | chr1_1:34287676-34287695 | None:intergenic | 15.0% |
| !!! | TGTTACTAATCTTTTTTTAA+AGG | + | chr1_1:34287979-34287998 | None:intergenic | 15.0% |
| !!! | TGTTACTAATTTTTTTTTAG+AGG | + | chr1_1:34288042-34288061 | None:intergenic | 15.0% |
| !! | CAAAAAATAATGTTAAAGAT+TGG | - | chr1_1:34288199-34288218 | Msa0019640:intron | 15.0% |
| !!! | TTTTTTACCTTTAAAATATG+TGG | + | chr1_1:34288554-34288573 | None:intergenic | 15.0% |
| !!! | TTTATCTTAATTTTATATGC+AGG | - | chr1_1:34289166-34289185 | Msa0019640:intron | 15.0% |
| !! | TATATAAAAGTTGAAATCAA+CGG | + | chr1_1:34289489-34289508 | None:intergenic | 15.0% |
| !! | AATTATTCATTTATGAATTG+TGG | - | chr1_1:34290103-34290122 | Msa0019640:intron | 15.0% |
| !!! | AAATTTCATGTGTTATTTTA+GGG | - | chr1_1:34290143-34290162 | Msa0019640:intron | 15.0% |
| !! | ACATATACATAAATTAAACA+AGG | + | chr1_1:34291139-34291158 | None:intergenic | 15.0% |
| !!! | TGAAATAAAGCTTAATTTTT+TGG | - | chr1_1:34291169-34291188 | Msa0019640:intron | 15.0% |
| !!! | GAAAATTTTAAACTAACTTT+TGG | + | chr1_1:34291287-34291306 | None:intergenic | 15.0% |
| !! | TTTAAAAATATTCAATTTGG+AGG | + | chr1_1:34292621-34292640 | None:intergenic | 15.0% |
| !! | TCATATAACAATTGAGTTAT+TGG | - | chr1_1:34283571-34283590 | Msa0019640:three_prime_UTR | 20.0% |
| !! | AAACGTGATAATTCTTATAT+TGG | + | chr1_1:34283824-34283843 | None:intergenic | 20.0% |
| !!! | ATCTTAGTTTTACTTTTTGT+TGG | + | chr1_1:34283916-34283935 | None:intergenic | 20.0% |
| !! | AACTAAGATAAGTTATATAC+TGG | - | chr1_1:34283927-34283946 | Msa0019640:exon | 20.0% |
| !!! | AATAAACTTTTCATATGATG+TGG | + | chr1_1:34284164-34284183 | None:intergenic | 20.0% |
| !!! | TTATATACATGATCCATTTT+AGG | - | chr1_1:34284244-34284263 | Msa0019640:intron | 20.0% |
| !! | CCTAAAAGGTAAATATTTAA+GGG | + | chr1_1:34284461-34284480 | None:intergenic | 20.0% |
| !!! | CCTTAAATATTTACCTTTTA+GGG | - | chr1_1:34284459-34284478 | Msa0019640:CDS | 20.0% |
| !!! | ATAATCTTACCCTTTTTTTA+AGG | - | chr1_1:34284844-34284863 | Msa0019640:intron | 20.0% |
| !! | GTAGTAGTATTAGTATTATT+TGG | + | chr1_1:34285157-34285176 | None:intergenic | 20.0% |
| !!! | TTGAACATAACGTTTTATTA+TGG | + | chr1_1:34285467-34285486 | None:intergenic | 20.0% |
| !! | AACTAGTTAATTTCTTCAAA+AGG | - | chr1_1:34285624-34285643 | Msa0019640:CDS | 20.0% |
| !!! | AATTGGGTTTTGAAAAAAAT+GGG | - | chr1_1:34285869-34285888 | Msa0019640:intron | 20.0% |
| !!! | TTCACGTGTTATTTTATAAT+TGG | + | chr1_1:34286258-34286277 | None:intergenic | 20.0% |
| !!! | AAATATTGTTTTTTGTGGAA+GGG | + | chr1_1:34286465-34286484 | None:intergenic | 20.0% |
| !!! | TATGGAAATATTGTTTTTTG+TGG | + | chr1_1:34286470-34286489 | None:intergenic | 20.0% |
| !! | AAAGTTTAATAGAGACAAAA+GGG | + | chr1_1:34287333-34287352 | None:intergenic | 20.0% |
| !! | TAAAGTTTAATAGAGACAAA+AGG | + | chr1_1:34287334-34287353 | None:intergenic | 20.0% |
| !! | TGTATATATGTATATATAGG+GGG | + | chr1_1:34287498-34287517 | None:intergenic | 20.0% |
| !!! | AAAAAGTGTAACAAACTAAA+TGG | - | chr1_1:34287612-34287631 | Msa0019640:intron | 20.0% |
| !!! | AAAAGTGTAACAAACTAAAT+GGG | - | chr1_1:34287613-34287632 | Msa0019640:intron | 20.0% |
| !! | CAAAAAATAATGGTAAAGAT+TGG | - | chr1_1:34287944-34287963 | Msa0019640:intron | 20.0% |
| !! | CAAAATATAATGTTAACGAT+TGG | - | chr1_1:34288268-34288287 | Msa0019640:intron | 20.0% |
| !!! | GTTACTAATCTTTTTTTTAG+AGG | + | chr1_1:34288303-34288322 | None:intergenic | 20.0% |
| !!! | AAATCCTCTAAAAAAAGATT+AGG | - | chr1_1:34288360-34288379 | Msa0019640:intron | 20.0% |
| !! | TACTCATAACTTATATCAAT+AGG | - | chr1_1:34288493-34288512 | Msa0019640:intron | 20.0% |
| !! | TGGTTTATTTAAGAATATGT+TGG | - | chr1_1:34288651-34288670 | Msa0019640:intron | 20.0% |
| !!! | AAGTAAAAAAAGTTTGTTGA+CGG | + | chr1_1:34289697-34289716 | None:intergenic | 20.0% |
| !!! | TTTTGGTCTTTTTAACTAAT+TGG | - | chr1_1:34289771-34289790 | Msa0019640:intron | 20.0% |
| !!! | AATTTTCAGTCAAAACAAAA+AGG | + | chr1_1:34289860-34289879 | None:intergenic | 20.0% |
| !! | AATAAATACTCTAGTATTAG+AGG | + | chr1_1:34289892-34289911 | None:intergenic | 20.0% |
| !!! | GAAATTTCATGTGTTATTTT+AGG | - | chr1_1:34290142-34290161 | Msa0019640:intron | 20.0% |
| !! | AATTGAACTATGTGAAAAAT+TGG | + | chr1_1:34290616-34290635 | None:intergenic | 20.0% |
| !!! | CTAATATTTTTGGATTTATG+TGG | + | chr1_1:34291007-34291026 | None:intergenic | 20.0% |
| !! | ATAATTTATCCACATGATAA+GGG | + | chr1_1:34291063-34291082 | None:intergenic | 20.0% |
| !! | AATAATTTATCCACATGATA+AGG | + | chr1_1:34291064-34291083 | None:intergenic | 20.0% |
| !! | TAAAATTAATGCACCAAAAA+GGG | + | chr1_1:34292478-34292497 | None:intergenic | 20.0% |
| !! | TTAAAATTAATGCACCAAAA+AGG | + | chr1_1:34292479-34292498 | None:intergenic | 20.0% |
| !!! | ATTTTAACAAAAGTTACACT+TGG | + | chr1_1:34292920-34292939 | None:intergenic | 20.0% |
| !!! | AACTTTTGTTAAAATCACAT+TGG | - | chr1_1:34292925-34292944 | Msa0019640:intron | 20.0% |
| !! | TGATTGAGATAAATTTACAT+TGG | - | chr1_1:34293029-34293048 | Msa0019640:intron | 20.0% |
| !! | AAAAATCAAACACAGAAAAA+TGG | + | chr1_1:34293304-34293323 | None:intergenic | 20.0% |
| !! | AACAAACAATGTAAAATTGT+AGG | - | chr1_1:34293496-34293515 | Msa0019640:intron | 20.0% |
| !! | CCTATAAAATAAAACTGAAA+AGG | + | chr1_1:34293658-34293677 | None:intergenic | 20.0% |
| !!! | CCTTTTCAGTTTTATTTTAT+AGG | - | chr1_1:34293655-34293674 | Msa0019640:intron | 20.0% |
| !! | ATTAACTCAAACAAAACAAA+AGG | + | chr1_1:34293759-34293778 | None:intergenic | 20.0% |
| !! | TTTATCTATTATGGTGATTA+TGG | - | chr1_1:34293827-34293846 | Msa0019640:intron | 20.0% |
| ! | TAATGTATTATCTCTGTCAA+CGG | + | chr1_1:34284224-34284243 | None:intergenic | 25.0% |
| !! | TGTTTACTTGTGAAATGTTT+TGG | + | chr1_1:34284286-34284305 | None:intergenic | 25.0% |
| ! | TACAAAAGGTTTAATTACTG+TGG | - | chr1_1:34284334-34284353 | Msa0019640:intron | 25.0% |
| ! | ACAAAAGGTTTAATTACTGT+GGG | - | chr1_1:34284335-34284354 | Msa0019640:intron | 25.0% |
| ! | GACAAAACTAAATCCAATAT+TGG | - | chr1_1:34284376-34284395 | Msa0019640:CDS | 25.0% |
| !! | CCCTTAAATATTTACCTTTT+AGG | - | chr1_1:34284458-34284477 | Msa0019640:CDS | 25.0% |
| ! | CCCTAAAAGGTAAATATTTA+AGG | + | chr1_1:34284462-34284481 | None:intergenic | 25.0% |
| ! | ATGATGAAAATATACAAGCA+AGG | - | chr1_1:34284643-34284662 | Msa0019640:intron | 25.0% |
| !!! | TTATGTGCTTTTGACTTTTT+CGG | - | chr1_1:34284713-34284732 | Msa0019640:intron | 25.0% |
| !! | AATTTCCATCTGAAATCATA+TGG | - | chr1_1:34285029-34285048 | Msa0019640:intron | 25.0% |
| !!! | AACGTTTTATTATGGTAGTT+TGG | + | chr1_1:34285459-34285478 | None:intergenic | 25.0% |
| !! | AAAAAGAAACTTTTCATCTC+AGG | - | chr1_1:34285781-34285800 | Msa0019640:intron | 25.0% |
| !!! | GAATTGGGTTTTGAAAAAAA+TGG | - | chr1_1:34285868-34285887 | Msa0019640:intron | 25.0% |
| !!! | AAAAAATCAGCCCTTTTTTT+GGG | + | chr1_1:34285895-34285914 | None:intergenic | 25.0% |
| !!! | AAAAAAATCAGCCCTTTTTT+TGG | + | chr1_1:34285896-34285915 | None:intergenic | 25.0% |
| !!! | GAAATATTGTTTTTTGTGGA+AGG | + | chr1_1:34286466-34286485 | None:intergenic | 25.0% |
| ! | ACACCTTAATAAAAACTAGT+GGG | + | chr1_1:34286774-34286793 | None:intergenic | 25.0% |
| ! | AAGTTGTTAAATACACCTTA+AGG | - | chr1_1:34286817-34286836 | Msa0019640:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | - | chr1_1:34286856-34286875 | Msa0019640:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | + | chr1_1:34286856-34286875 | None:intergenic | 25.0% |
| ! | AAGTAGTTAAATACACCTTA+AGG | - | chr1_1:34286963-34286982 | Msa0019640:intron | 25.0% |
| ! | AACACACCCTATATATATAT+AGG | - | chr1_1:34287074-34287093 | Msa0019640:intron | 25.0% |
| ! | ACACACCCTATATATATATA+GGG | - | chr1_1:34287075-34287094 | Msa0019640:intron | 25.0% |
| ! | CAACACCCTATATATATATA+GGG | + | chr1_1:34287083-34287102 | None:intergenic | 25.0% |
| ! | ACAACACCCTATATATATAT+AGG | + | chr1_1:34287084-34287103 | None:intergenic | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | + | chr1_1:34287155-34287174 | None:intergenic | 25.0% |
| !!! | TGTTTTGGTAAATAACTAGT+AGG | - | chr1_1:34287265-34287284 | Msa0019640:intron | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | + | chr1_1:34287155-34287174 | None:intergenic | 25.0% |
| !!! | TGTTTTGGTAAATAACTAGT+AGG | - | chr1_1:34287265-34287284 | Msa0019640:intron | 25.0% |
| !! | AGTTGTTTAAGGGTATAATT+GGG | + | chr1_1:34287665-34287684 | None:intergenic | 25.0% |
| !! | AAGTTGTTTAAGGGTATAAT+TGG | + | chr1_1:34287666-34287685 | None:intergenic | 25.0% |
| ! | TTTATTAACTAGCGAAAAGA+CGG | + | chr1_1:34287881-34287900 | None:intergenic | 25.0% |
| !! | CATTTGTTACAATTGATCAA+AGG | + | chr1_1:34287920-34287939 | None:intergenic | 25.0% |
| ! | CAAATGTGAGCAAAAAATAA+TGG | - | chr1_1:34287934-34287953 | Msa0019640:intron | 25.0% |
| !! | TGTTACTAATCTTCTTTTAG+AGG | + | chr1_1:34288105-34288124 | None:intergenic | 25.0% |
| !!! | GAATCCTAATCTTTTTTTAG+AGG | + | chr1_1:34288367-34288386 | None:intergenic | 25.0% |
| !!! | TTACCTTTAAAATATGTGGT+GGG | + | chr1_1:34288550-34288569 | None:intergenic | 25.0% |
| !!! | TTTACCTTTAAAATATGTGG+TGG | + | chr1_1:34288551-34288570 | None:intergenic | 25.0% |
| ! | CATTATACAGATCATATCTA+GGG | + | chr1_1:34288612-34288631 | None:intergenic | 25.0% |
| ! | CTAGATATGATCTGTATAAT+GGG | - | chr1_1:34288611-34288630 | Msa0019640:intron | 25.0% |
| ! | AATAGCAAAACTTAGTCTAA+CGG | + | chr1_1:34288791-34288810 | None:intergenic | 25.0% |
| ! | ATTACCATAAATAAGTCACA+AGG | - | chr1_1:34288808-34288827 | Msa0019640:intron | 25.0% |
| ! | TTACCATAAATAAGTCACAA+GGG | - | chr1_1:34288809-34288828 | Msa0019640:intron | 25.0% |
| ! | CTTCAAAAAAAAAGTCACAA+GGG | - | chr1_1:34288836-34288855 | Msa0019640:intron | 25.0% |
| ! | ACAAAAGTTCTCATTAAAGA+AGG | - | chr1_1:34288955-34288974 | Msa0019640:intron | 25.0% |
| ! | CAAAAGTTCTCATTAAAGAA+GGG | - | chr1_1:34288956-34288975 | Msa0019640:intron | 25.0% |
| ! | GAGATACAACTAATAATCAA+CGG | + | chr1_1:34289558-34289577 | None:intergenic | 25.0% |
| ! | TGTACACATAACAGAATAAA+CGG | + | chr1_1:34289591-34289610 | None:intergenic | 25.0% |
| ! | CTCTCTTCAAAATTCTTTAA+CGG | - | chr1_1:34289812-34289831 | Msa0019640:intron | 25.0% |
| !! | TCAAAATTCTTTAACGGTTT+TGG | - | chr1_1:34289818-34289837 | Msa0019640:intron | 25.0% |
| ! | CTGTCACAAAAAATGTAATA+AGG | + | chr1_1:34290001-34290020 | None:intergenic | 25.0% |
| !!! | CTTATTACATTTTTTGTGAC+AGG | - | chr1_1:34289999-34290018 | Msa0019640:intron | 25.0% |
| !!! | TGTTAGGTTTTATCTTACAA+AGG | + | chr1_1:34290552-34290571 | None:intergenic | 25.0% |
| ! | TGAAAAATTGGAAAATAACG+TGG | + | chr1_1:34290604-34290623 | None:intergenic | 25.0% |
| ! | AAAGGGTAAAACAAACAAAA+GGG | + | chr1_1:34290662-34290681 | None:intergenic | 25.0% |
| ! | AAAAGGGTAAAACAAACAAA+AGG | + | chr1_1:34290663-34290682 | None:intergenic | 25.0% |
| !!! | TTTGTTTGTTTTACCCTTTT+AGG | - | chr1_1:34290663-34290682 | Msa0019640:intron | 25.0% |
| ! | AAGAATGTAACAACCTAAAA+GGG | + | chr1_1:34290679-34290698 | None:intergenic | 25.0% |
| ! | AAAGAATGTAACAACCTAAA+AGG | + | chr1_1:34290680-34290699 | None:intergenic | 25.0% |
| ! | ATGTGACTGAAAATATGAAA+AGG | + | chr1_1:34290712-34290731 | None:intergenic | 25.0% |
| !! | TTTTCATATTTTCAGTCACA+TGG | - | chr1_1:34290711-34290730 | Msa0019640:intron | 25.0% |
| ! | AGAATTATAAGCGTGAAATA+CGG | + | chr1_1:34290742-34290761 | None:intergenic | 25.0% |
| ! | ACTAAAATCTATCACATATC+TGG | + | chr1_1:34290870-34290889 | None:intergenic | 25.0% |
| ! | TATGTGGAACATAAGTTATA+TGG | + | chr1_1:34290991-34291010 | None:intergenic | 25.0% |
| !! | ATTGTAACGGCTAATATTTT+TGG | + | chr1_1:34291017-34291036 | None:intergenic | 25.0% |
| !! | TAAGTGTGTATTTGATTTCA+CGG | + | chr1_1:34291365-34291384 | None:intergenic | 25.0% |
| !! | ACCAATATGGTTGATATTAT+AGG | - | chr1_1:34291435-34291454 | Msa0019640:intron | 25.0% |
| ! | GTTACTAATGTTATCATTCA+TGG | - | chr1_1:34291848-34291867 | Msa0019640:intron | 25.0% |
| !! | TATTTGGTTCAAGTCATATT+TGG | - | chr1_1:34291972-34291991 | Msa0019640:intron | 25.0% |
| !! | ATTTGGTTCAAGTCATATTT+GGG | - | chr1_1:34291973-34291992 | Msa0019640:intron | 25.0% |
| ! | TAGTTAGTTATTGCATTGTA+TGG | - | chr1_1:34292191-34292210 | Msa0019640:intron | 25.0% |
| !!! | TTATGTGTTTTTGCAAATTC+AGG | - | chr1_1:34292237-34292256 | Msa0019640:intron | 25.0% |
| ! | TAAATGTTAAACCATAAGAC+AGG | - | chr1_1:34292431-34292450 | Msa0019640:intron | 25.0% |
| ! | TATTGTAAGAATTCAGAAGA+TGG | - | chr1_1:34292539-34292558 | Msa0019640:intron | 25.0% |
| ! | ATTGTAAGAATTCAGAAGAT+GGG | - | chr1_1:34292540-34292559 | Msa0019640:intron | 25.0% |
| ! | ATATTGATCATGAAAAATGC+AGG | - | chr1_1:34292679-34292698 | Msa0019640:intron | 25.0% |
| ! | GAATTATTAATGTACCTCTT+TGG | + | chr1_1:34292835-34292854 | None:intergenic | 25.0% |
| ! | AAATATGCATATGAATTGGT+GGG | + | chr1_1:34293593-34293612 | None:intergenic | 25.0% |
| ! | AAAATATGCATATGAATTGG+TGG | + | chr1_1:34293594-34293613 | None:intergenic | 25.0% |
| ! | GGAAAAATATGCATATGAAT+TGG | + | chr1_1:34293597-34293616 | None:intergenic | 25.0% |
| ! | TGGAAACACTTTATCTATTA+TGG | - | chr1_1:34293818-34293837 | Msa0019640:intron | 25.0% |
| ! | AAGTGACAAAAAGGTAAAAA+GGG | + | chr1_1:34293881-34293900 | None:intergenic | 25.0% |
| ! | AAAGTGACAAAAAGGTAAAA+AGG | + | chr1_1:34293882-34293901 | None:intergenic | 25.0% |
| ! | GCTAAAAAAAAGTGACAAAA+AGG | + | chr1_1:34293890-34293909 | None:intergenic | 25.0% |
| ! | TTGACAATGAAAGAAAACAA+AGG | + | chr1_1:34293912-34293931 | None:intergenic | 25.0% |
| !!! | TGCTTTTTGTTATGCAATTA+TGG | - | chr1_1:34293945-34293964 | Msa0019640:CDS | 25.0% |
| ! | ATTTTATGCCATAGCGAATT+TGG | - | chr1_1:34283291-34283310 | Msa0019640:three_prime_UTR | 30.0% |
| ! | TATGTTCTAGACTACTCAAA+GGG | + | chr1_1:34283350-34283369 | None:intergenic | 30.0% |
| ! | TTATGTTCTAGACTACTCAA+AGG | + | chr1_1:34283351-34283370 | None:intergenic | 30.0% |
| GAACATAATGCATACCTAAT+AGG | - | chr1_1:34283363-34283382 | Msa0019640:three_prime_UTR | 30.0% | |
| GATACAACATTAATCGTAGT+AGG | - | chr1_1:34283435-34283454 | Msa0019640:three_prime_UTR | 30.0% | |
| AAAATTAGAAGTCATTCACG+AGG | + | chr1_1:34283783-34283802 | None:intergenic | 30.0% | |
| CGTGATAATTCTTATATTGG+TGG | + | chr1_1:34283821-34283840 | None:intergenic | 30.0% | |
| !! | TGGTCAATCTTCTTTTAAGT+GGG | - | chr1_1:34283947-34283966 | Msa0019640:CDS | 30.0% |
| GAGATTTATTTCAATCGAGA+GGG | + | chr1_1:34284108-34284127 | None:intergenic | 30.0% | |
| TAATTCGAGTGTTCCAATAT+TGG | + | chr1_1:34284392-34284411 | None:intergenic | 30.0% | |
| GTATAGTGATGATATTTGTG+GGG | + | chr1_1:34284596-34284615 | None:intergenic | 30.0% | |
| GGTATAGTGATGATATTTGT+GGG | + | chr1_1:34284597-34284616 | None:intergenic | 30.0% | |
| TGGTATAGTGATGATATTTG+TGG | + | chr1_1:34284598-34284617 | None:intergenic | 30.0% | |
| ! | AAGGATAACCATTGATTACA+TGG | - | chr1_1:34284662-34284681 | Msa0019640:intron | 30.0% |
| ATGCGTGACAAAAAATTTAG+AGG | - | chr1_1:34284814-34284833 | Msa0019640:intron | 30.0% | |
| ! | ACACTATACTGTCTTTTGAA+AGG | + | chr1_1:34284961-34284980 | None:intergenic | 30.0% |
| ! | TGAAATCATATGGTAGGTTT+TGG | - | chr1_1:34285039-34285058 | Msa0019640:intron | 30.0% |
| !!! | TTTTTGGATGGTTTTATGGA+TGG | + | chr1_1:34285554-34285573 | None:intergenic | 30.0% |
| !!! | TGCTTTTTTGGATGGTTTTA+TGG | + | chr1_1:34285558-34285577 | None:intergenic | 30.0% |
| !!! | ACTTGTGAAACTTGCTTTTT+TGG | + | chr1_1:34285570-34285589 | None:intergenic | 30.0% |
| AATGGAGCATATATCAGTTA+CGG | + | chr1_1:34285731-34285750 | None:intergenic | 30.0% | |
| TTAGTAAACGTTTCAGTCTT+TGG | - | chr1_1:34285832-34285851 | Msa0019640:intron | 30.0% | |
| TAGTAAACGTTTCAGTCTTT+GGG | - | chr1_1:34285833-34285852 | Msa0019640:intron | 30.0% | |
| AAAAAAATGGGCCCAAAAAA+AGG | - | chr1_1:34285881-34285900 | Msa0019640:intron | 30.0% | |
| AAAAAATGGGCCCAAAAAAA+GGG | - | chr1_1:34285882-34285901 | Msa0019640:intron | 30.0% | |
| AGATGTAAACTCGTAAAACT+CGG | - | chr1_1:34285919-34285938 | Msa0019640:intron | 30.0% | |
| !! | AACTCGATTTCTGGTAAATT+CGG | + | chr1_1:34285998-34286017 | None:intergenic | 30.0% |
| GTACCAAAATTGTGTTAACT+CGG | + | chr1_1:34286026-34286045 | None:intergenic | 30.0% | |
| ! | TTTACCGAGTTTACGTTTTT+AGG | + | chr1_1:34286048-34286067 | None:intergenic | 30.0% |
| !!! | TTTTTTGTGAGTTTGATCTG+TGG | + | chr1_1:34286334-34286353 | None:intergenic | 30.0% |
| ACAGATGTACAACATACAAT+CGG | + | chr1_1:34286394-34286413 | None:intergenic | 30.0% | |
| AAATACTTGGCAATCTTTGT+CGG | + | chr1_1:34286436-34286455 | None:intergenic | 30.0% | |
| !!! | ACACCCACTAGTTTTTATTA+AGG | - | chr1_1:34286768-34286787 | Msa0019640:intron | 30.0% |
| CACACCTTAATAAAAACTAG+TGG | + | chr1_1:34286775-34286794 | None:intergenic | 30.0% | |
| ! | TTTTAGCAACATTCACCTTA+AGG | + | chr1_1:34286835-34286854 | None:intergenic | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | - | chr1_1:34286855-34286874 | Msa0019640:intron | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | + | chr1_1:34286915-34286934 | None:intergenic | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | - | chr1_1:34286915-34286934 | Msa0019640:intron | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | + | chr1_1:34286855-34286874 | None:intergenic | 30.0% |
| ! | ATAGAAAAACATGGGTGTTT+TGG | - | chr1_1:34287250-34287269 | Msa0019640:intron | 30.0% |
| ! | ATAGAAAAACATGGGTGTTT+TGG | - | chr1_1:34287250-34287269 | Msa0019640:intron | 30.0% |
| ! | TTTTAACGCAGTAAAAAGAG+TGG | - | chr1_1:34287835-34287854 | Msa0019640:intron | 30.0% |
| TTATTAACTAGCGAAAAGAC+GGG | + | chr1_1:34287880-34287899 | None:intergenic | 30.0% | |
| TTAATTATCAACCAGTTTCC+AGG | - | chr1_1:34288428-34288447 | Msa0019640:intron | 30.0% | |
| TAATTATCAACCAGTTTCCA+GGG | - | chr1_1:34288429-34288448 | Msa0019640:intron | 30.0% | |
| !! | AAATTTGTTGTCATTTGACG+AGG | - | chr1_1:34288460-34288479 | Msa0019640:intron | 30.0% |
| TTCCTAAACTCAATTACTCA+AGG | - | chr1_1:34288518-34288537 | Msa0019640:intron | 30.0% | |
| TTCCTTGAGTAATTGAGTTT+AGG | + | chr1_1:34288523-34288542 | None:intergenic | 30.0% | |
| !! | TATCCCACCACATATTTTAA+AGG | - | chr1_1:34288544-34288563 | Msa0019640:intron | 30.0% |
| CCATTATACAGATCATATCT+AGG | + | chr1_1:34288613-34288632 | None:intergenic | 30.0% | |
| CCTAGATATGATCTGTATAA+TGG | - | chr1_1:34288610-34288629 | Msa0019640:intron | 30.0% | |
| ATAGCAAAACTTAGTCTAAC+GGG | + | chr1_1:34288790-34288809 | None:intergenic | 30.0% | |
| ATACCCTTGTGACTTATTTA+TGG | + | chr1_1:34288815-34288834 | None:intergenic | 30.0% | |
| !!! | CCTTGTGACTTTTTTTTTGA+AGG | + | chr1_1:34288838-34288857 | None:intergenic | 30.0% |
| CCTTCAAAAAAAAAGTCACA+AGG | - | chr1_1:34288835-34288854 | Msa0019640:intron | 30.0% | |
| AAGCTACATATAATTGACCA+TGG | + | chr1_1:34288909-34288928 | None:intergenic | 30.0% | |
| !! | TTATATGTAGCTTTATCGAG+AGG | - | chr1_1:34288916-34288935 | Msa0019640:intron | 30.0% |
| CTCATTAAAGAAGGGAAAAT+AGG | - | chr1_1:34288964-34288983 | Msa0019640:intron | 30.0% | |
| !! | TGTTTTTGAAGGTTGAAAGA+GGG | + | chr1_1:34289450-34289469 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGAAGGTTGAAAG+AGG | + | chr1_1:34289451-34289470 | None:intergenic | 30.0% |
| !!! | ATTAACGGGTTTGTTTTTGA+AGG | + | chr1_1:34289461-34289480 | None:intergenic | 30.0% |
| AAATCAACGGTTGAGATTAA+CGG | + | chr1_1:34289476-34289495 | None:intergenic | 30.0% | |
| TCTGTTATGTGTACATTCTT+AGG | - | chr1_1:34289596-34289615 | Msa0019640:intron | 30.0% | |
| !! | AACATTTTGGAGGGTAATTT+CGG | + | chr1_1:34289722-34289741 | None:intergenic | 30.0% |
| CTATCATGTAAGAACTACAA+GGG | + | chr1_1:34289746-34289765 | None:intergenic | 30.0% | |
| ACTATCATGTAAGAACTACA+AGG | + | chr1_1:34289747-34289766 | None:intergenic | 30.0% | |
| TTGTAGTTCTTACATGATAG+TGG | - | chr1_1:34289746-34289765 | Msa0019640:intron | 30.0% | |
| !!! | CTTACATGATAGTGGTATTT+TGG | - | chr1_1:34289754-34289773 | Msa0019640:intron | 30.0% |
| TCAGTCAAAACAAAAAGGTA+CGG | + | chr1_1:34289855-34289874 | None:intergenic | 30.0% | |
| ! | TAAGAAAGTACAATTGCACT+AGG | + | chr1_1:34289967-34289986 | None:intergenic | 30.0% |
| TAGTGCAATTGTACTTTCTT+AGG | - | chr1_1:34289966-34289985 | Msa0019640:intron | 30.0% | |
| AGTGCAATTGTACTTTCTTA+GGG | - | chr1_1:34289967-34289986 | Msa0019640:intron | 30.0% | |
| AGAATGTAGAAAGAAAGAGA+GGG | + | chr1_1:34290252-34290271 | None:intergenic | 30.0% | |
| ACGTGCATATGTTATCATAT+AGG | + | chr1_1:34290471-34290490 | None:intergenic | 30.0% | |
| TATATGATAACATATGCACG+TGG | - | chr1_1:34290470-34290489 | Msa0019640:intron | 30.0% | |
| ATTTAGCCTAATCCATCTTA+AGG | - | chr1_1:34290780-34290799 | Msa0019640:intron | 30.0% | |
| TTTAGCCTAATCCATCTTAA+GGG | - | chr1_1:34290781-34290800 | Msa0019640:intron | 30.0% | |
| AAAATGTTGTACCCTTAAGA+TGG | + | chr1_1:34290795-34290814 | None:intergenic | 30.0% | |
| GTTGTAAGGAATAAATCACA+TGG | + | chr1_1:34290908-34290927 | None:intergenic | 30.0% | |
| !!! | GCTTTTTTGTCACTATTACA+TGG | + | chr1_1:34290961-34290980 | None:intergenic | 30.0% |
| GAACTTTCTCTCAATTGTAA+CGG | + | chr1_1:34291030-34291049 | None:intergenic | 30.0% | |
| GCCTATAATATCAACCATAT+TGG | + | chr1_1:34291439-34291458 | None:intergenic | 30.0% | |
| AACAGTTTCAAGACAATTGA+TGG | - | chr1_1:34291773-34291792 | Msa0019640:intron | 30.0% | |
| ATTCATGATTGTAAACCTAC+TGG | - | chr1_1:34291878-34291897 | Msa0019640:intron | 30.0% | |
| !! | GGTGATGCTATTTCTATATT+TGG | - | chr1_1:34291956-34291975 | Msa0019640:intron | 30.0% |
| TAACTAACTACTACATGTGT+CGG | + | chr1_1:34292181-34292200 | None:intergenic | 30.0% | |
| ! | ACCATAGCTTATAACCATTT+TGG | - | chr1_1:34292313-34292332 | Msa0019640:intron | 30.0% |
| TCCAAAATGGTTATAAGCTA+TGG | + | chr1_1:34292317-34292336 | None:intergenic | 30.0% | |
| AGTGACATTAAATATTACCG+TGG | + | chr1_1:34292361-34292380 | None:intergenic | 30.0% | |
| AGCATATACAAAGTGTGAAA+GGG | + | chr1_1:34292410-34292429 | None:intergenic | 30.0% | |
| AAGCATATACAAAGTGTGAA+AGG | + | chr1_1:34292411-34292430 | None:intergenic | 30.0% | |
| TTGTAAGAATTCAGAAGATG+GGG | - | chr1_1:34292541-34292560 | Msa0019640:intron | 30.0% | |
| TGAATACACAAACAACTATC+TGG | + | chr1_1:34292567-34292586 | None:intergenic | 30.0% | |
| !! | TTTTGTATTGACAGTGAGTT+TGG | + | chr1_1:34292971-34292990 | None:intergenic | 30.0% |
| TGAGATAAATTTACATTGGC+AGG | - | chr1_1:34293033-34293052 | Msa0019640:intron | 30.0% | |
| AAAATGGTTGTTTGTTTCCT+TGG | + | chr1_1:34293288-34293307 | None:intergenic | 30.0% | |
| ATGCTGAGAAAAATAAGCAA+TGG | + | chr1_1:34293373-34293392 | None:intergenic | 30.0% | |
| !! | TTCTCTACTTTTCTACCTTT+TGG | - | chr1_1:34293536-34293555 | Msa0019640:intron | 30.0% |
| TGATTGTCAAAGTTGAGTAA+TGG | - | chr1_1:34293798-34293817 | Msa0019640:intron | 30.0% | |
| ! | TGAGAAGAAGACATTTTCCT+TGG | - | chr1_1:34283206-34283225 | Msa0019640:three_prime_UTR | 35.0% |
| ! | GAGAAGAAGACATTTTCCTT+GGG | - | chr1_1:34283207-34283226 | Msa0019640:three_prime_UTR | 35.0% |
| ! | ACATTTTCCTTGGGATTTTG+AGG | - | chr1_1:34283216-34283235 | Msa0019640:three_prime_UTR | 35.0% |
| CAATCCAAGACCTAAAAACT+GGG | + | chr1_1:34283317-34283336 | None:intergenic | 35.0% | |
| TTTCAGAAGCAAGCACAATA+TGG | + | chr1_1:34283619-34283638 | None:intergenic | 35.0% | |
| TTCTCTTGTTGCGTTCAATT+AGG | + | chr1_1:34283700-34283719 | None:intergenic | 35.0% | |
| ! | CTGGTCAATCTTCTTTTAAG+TGG | - | chr1_1:34283946-34283965 | Msa0019640:CDS | 35.0% |
| AAGTGGGTCATTTGCATATA+AGG | - | chr1_1:34283963-34283982 | Msa0019640:CDS | 35.0% | |
| AGTGGGTCATTTGCATATAA+GGG | - | chr1_1:34283964-34283983 | Msa0019640:CDS | 35.0% | |
| !! | ATTTCAATCGAGAGGGTATT+GGG | + | chr1_1:34284101-34284120 | None:intergenic | 35.0% |
| ! | TATTTCAATCGAGAGGGTAT+TGG | + | chr1_1:34284102-34284121 | None:intergenic | 35.0% |
| GGAGATTTATTTCAATCGAG+AGG | + | chr1_1:34284109-34284128 | None:intergenic | 35.0% | |
| TGTAGTAAACAAAACCGCAT+TGG | - | chr1_1:34284183-34284202 | Msa0019640:intron | 35.0% | |
| GTTTAATTACTGTGGGTAGT+GGG | - | chr1_1:34284342-34284361 | Msa0019640:intron | 35.0% | |
| ! | GGACAAAAGTGTAAATTACG+TGG | + | chr1_1:34284575-34284594 | None:intergenic | 35.0% |
| TCACTATACCATGTACCAAA+AGG | - | chr1_1:34284607-34284626 | Msa0019640:intron | 35.0% | |
| ! | TTTGTGTACCTTTTGGTACA+TGG | + | chr1_1:34284618-34284637 | None:intergenic | 35.0% |
| ! | ATAGTGCTTTGTGTACCTTT+TGG | + | chr1_1:34284625-34284644 | None:intergenic | 35.0% |
| TATCTGCATCAAGTAAGTAG+AGG | - | chr1_1:34284758-34284777 | Msa0019640:intron | 35.0% | |
| ATCTGCATCAAGTAAGTAGA+GGG | - | chr1_1:34284759-34284778 | Msa0019640:intron | 35.0% | |
| ! | TCCATCTGAAATCATATGGT+AGG | - | chr1_1:34285033-34285052 | Msa0019640:intron | 35.0% |
| ACCTACCATATGATTTCAGA+TGG | + | chr1_1:34285037-34285056 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTTAATGTTCGAGA+TGG | - | chr1_1:34285055-34285074 | Msa0019640:intron | 35.0% |
| TTGTAAAACCTTGGCTGAAA+GGG | + | chr1_1:34285259-34285278 | None:intergenic | 35.0% | |
| !!! | GTGAAACTTGCTTTTTTGGA+TGG | + | chr1_1:34285566-34285585 | None:intergenic | 35.0% |
| GAAATATGAATTTCCACCGT+TGG | - | chr1_1:34285697-34285716 | Msa0019640:CDS | 35.0% | |
| GATATATGCTCCATTGTTCA+TGG | - | chr1_1:34285736-34285755 | Msa0019640:intron | 35.0% | |
| AGTTCTCAAACCATGAACAA+TGG | + | chr1_1:34285749-34285768 | None:intergenic | 35.0% | |
| GGTACCTAAAAACGTAAACT+CGG | - | chr1_1:34286041-34286060 | Msa0019640:intron | 35.0% | |
| AAACGTAAACTCGGTAAACT+CGG | - | chr1_1:34286050-34286069 | Msa0019640:intron | 35.0% | |
| ! | ATTGCTTTCAGCACACTTTT+GGG | - | chr1_1:34286098-34286117 | Msa0019640:intron | 35.0% |
| TGAGTTTGATCTGTGGTTAA+CGG | + | chr1_1:34286327-34286346 | None:intergenic | 35.0% | |
| ! | ATCTTTGTCGGTTGTATTGA+GGG | + | chr1_1:34286424-34286443 | None:intergenic | 35.0% |
| ! | AATCTTTGTCGGTTGTATTG+AGG | + | chr1_1:34286425-34286444 | None:intergenic | 35.0% |
| GGAAGGGATATGAAAATACT+TGG | + | chr1_1:34286449-34286468 | None:intergenic | 35.0% | |
| ! | TATACATATAGGGGTTTGCT+AGG | - | chr1_1:34286743-34286762 | Msa0019640:intron | 35.0% |
| TGTATGTTAGCAACTCCTAT+AGG | - | chr1_1:34286879-34286898 | Msa0019640:intron | 35.0% | |
| ! | TTTTAGCAAGCTACACCTTA+AGG | + | chr1_1:34286981-34287000 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr1_1:34287455-34287474 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr1_1:34287455-34287474 | Msa0019640:intron | 35.0% |
| CAGTAAAAAGAGTGGAAAGA+CGG | - | chr1_1:34287843-34287862 | Msa0019640:intron | 35.0% | |
| AGTAAAAAGAGTGGAAAGAC+GGG | - | chr1_1:34287844-34287863 | Msa0019640:intron | 35.0% | |
| AATTATCAACCAGTTTCCAG+GGG | - | chr1_1:34288430-34288449 | Msa0019640:intron | 35.0% | |
| !! | AACAAATTTAGTTCTTCCCC+TGG | + | chr1_1:34288449-34288468 | None:intergenic | 35.0% |
| ATGTTTCGCAACAACATCAA+AGG | + | chr1_1:34288586-34288605 | None:intergenic | 35.0% | |
| TTGGATGTCGAAATCATAAC+AGG | - | chr1_1:34288670-34288689 | Msa0019640:intron | 35.0% | |
| ! | CTGTTTTCTACTAAGCACAA+AGG | + | chr1_1:34288764-34288783 | None:intergenic | 35.0% |
| ATAGATTTCGACATTGGGAA+TGG | + | chr1_1:34288866-34288885 | None:intergenic | 35.0% | |
| GGAAGATAGATTTCGACATT+GGG | + | chr1_1:34288871-34288890 | None:intergenic | 35.0% | |
| TGGAAGATAGATTTCGACAT+TGG | + | chr1_1:34288872-34288891 | None:intergenic | 35.0% | |
| AATCAACGGTTGAGATTAAC+GGG | + | chr1_1:34289475-34289494 | None:intergenic | 35.0% | |
| !! | GTTGATGATACTCGATCTAA+CGG | + | chr1_1:34289523-34289542 | None:intergenic | 35.0% |
| ATTAGTTGTATCTCTCGATC+TGG | - | chr1_1:34289564-34289583 | Msa0019640:intron | 35.0% | |
| !!! | ATTGCTTTTTGCGTATGTCA+CGG | + | chr1_1:34289648-34289667 | None:intergenic | 35.0% |
| ! | TACAAGGGTAACATTTTGGA+GGG | + | chr1_1:34289731-34289750 | None:intergenic | 35.0% |
| ! | GAACTACAAGGGTAACATTT+TGG | + | chr1_1:34289735-34289754 | None:intergenic | 35.0% |
| AATTGTACTTTCTTAGGGAC+AGG | - | chr1_1:34289972-34289991 | Msa0019640:intron | 35.0% | |
| GAGAATGTAGAAAGAAAGAG+AGG | + | chr1_1:34290253-34290272 | None:intergenic | 35.0% | |
| ATAACATATGCACGTGGTTT+AGG | - | chr1_1:34290476-34290495 | Msa0019640:intron | 35.0% | |
| TAACATATGCACGTGGTTTA+GGG | - | chr1_1:34290477-34290496 | Msa0019640:intron | 35.0% | |
| ACTAGACATGTAATGTGGTA+GGG | - | chr1_1:34290500-34290519 | Msa0019640:intron | 35.0% | |
| ATAACGTGGCAGAGAAAAAT+GGG | + | chr1_1:34290590-34290609 | None:intergenic | 35.0% | |
| AATAACGTGGCAGAGAAAAA+TGG | + | chr1_1:34290591-34290610 | None:intergenic | 35.0% | |
| ! | TTGTACCCTTAAGATGGATT+AGG | + | chr1_1:34290789-34290808 | None:intergenic | 35.0% |
| ! | GTGATGCTAGTAGCATATTT+TGG | - | chr1_1:34290928-34290947 | Msa0019640:intron | 35.0% |
| AACTTGTATGCTGACCAATA+TGG | - | chr1_1:34291422-34291441 | Msa0019640:intron | 35.0% | |
| ! | AGCACTGAAAGAAGAAATCT+TGG | - | chr1_1:34291470-34291489 | Msa0019640:intron | 35.0% |
| ! | AATCTTGGATTTTTCTCCTG+TGG | - | chr1_1:34291485-34291504 | Msa0019640:intron | 35.0% |
| AAGTGGTCTATCTTGGATAA+CGG | + | chr1_1:34291699-34291718 | None:intergenic | 35.0% | |
| TTATCCAAGATAGACCACTT+TGG | - | chr1_1:34291699-34291718 | Msa0019640:intron | 35.0% | |
| TTCAAGACAATTGATGGAAG+AGG | - | chr1_1:34291779-34291798 | Msa0019640:intron | 35.0% | |
| GCTAATGTCCATATTGCTAA+TGG | - | chr1_1:34291803-34291822 | Msa0019640:intron | 35.0% | |
| AATGTCCATATTGCTAATGG+AGG | - | chr1_1:34291806-34291825 | Msa0019640:intron | 35.0% | |
| ATGTCCATATTGCTAATGGA+GGG | - | chr1_1:34291807-34291826 | Msa0019640:intron | 35.0% | |
| ! | TAAACCTACTGGTAATGCTA+TGG | - | chr1_1:34291889-34291908 | Msa0019640:intron | 35.0% |
| ! | AGAAGCTCAGAAACACATTT+TGG | - | chr1_1:34291914-34291933 | Msa0019640:intron | 35.0% |
| !! | AGAAAGTACCTCATTGTGAT+GGG | + | chr1_1:34292089-34292108 | None:intergenic | 35.0% |
| !! | AAGAAAGTACCTCATTGTGA+TGG | + | chr1_1:34292090-34292109 | None:intergenic | 35.0% |
| CAAATTCAGGTGATTCTGTT+GGG | - | chr1_1:34292250-34292269 | Msa0019640:intron | 35.0% | |
| !! | AGCTTATAACCATTTTGGAG+AGG | - | chr1_1:34292318-34292337 | Msa0019640:intron | 35.0% |
| !! | GCTTATAACCATTTTGGAGA+GGG | - | chr1_1:34292319-34292338 | Msa0019640:intron | 35.0% |
| TGTGAAAGGGAGAAAAAAAG+GGG | + | chr1_1:34292397-34292416 | None:intergenic | 35.0% | |
| GTGTGAAAGGGAGAAAAAAA+GGG | + | chr1_1:34292398-34292417 | None:intergenic | 35.0% | |
| AGTGTGAAAGGGAGAAAAAA+AGG | + | chr1_1:34292399-34292418 | None:intergenic | 35.0% | |
| TGTTAAACCATAAGACAGGT+TGG | - | chr1_1:34292435-34292454 | Msa0019640:intron | 35.0% | |
| ! | GTGTGATTTTTCTGAGCTAA+AGG | + | chr1_1:34292506-34292525 | None:intergenic | 35.0% |
| ! | TAGACATGGTTATTTCCATG+TGG | - | chr1_1:34292704-34292723 | Msa0019640:intron | 35.0% |
| TATAGTCATTGTTCACCACA+TGG | + | chr1_1:34292722-34292741 | None:intergenic | 35.0% | |
| TGAACAATGACTATACTCAC+TGG | - | chr1_1:34292727-34292746 | Msa0019640:intron | 35.0% | |
| GAACAATGACTATACTCACT+GGG | - | chr1_1:34292728-34292747 | Msa0019640:intron | 35.0% | |
| AATGTACCTCTTTGGCAAAA+GGG | + | chr1_1:34292827-34292846 | None:intergenic | 35.0% | |
| TAATGTACCTCTTTGGCAAA+AGG | + | chr1_1:34292828-34292847 | None:intergenic | 35.0% | |
| CAGTGAGTTTAGCGAAATTA+TGG | - | chr1_1:34292872-34292891 | Msa0019640:intron | 35.0% | |
| ACTTGGACTCAACAAAATCA+CGG | + | chr1_1:34292903-34292922 | None:intergenic | 35.0% | |
| GAGGGAGACTTATATCTAAA+TGG | - | chr1_1:34293112-34293131 | Msa0019640:intron | 35.0% | |
| !! | GGAATTTTTGTTAGCACTGA+CGG | + | chr1_1:34293267-34293286 | None:intergenic | 35.0% |
| CAGTGCTAACAAAAATTCCA+AGG | - | chr1_1:34293268-34293287 | Msa0019640:intron | 35.0% | |
| TTACATTGTTTGTTTGCAGC+TGG | + | chr1_1:34293490-34293509 | None:intergenic | 35.0% | |
| CAATGTAAAATTGTAGGAGC+AGG | - | chr1_1:34293502-34293521 | Msa0019640:intron | 35.0% | |
| CCAATCCAAGACCTAAAAAC+TGG | + | chr1_1:34283318-34283337 | None:intergenic | 40.0% | |
| !!! | CCAGTTTTTAGGTCTTGGAT+TGG | - | chr1_1:34283315-34283334 | Msa0019640:three_prime_UTR | 40.0% |
| GTGGGTCATTTGCATATAAG+GGG | - | chr1_1:34283965-34283984 | Msa0019640:CDS | 40.0% | |
| !! | TTTCAATCGAGAGGGTATTG+GGG | + | chr1_1:34284100-34284119 | None:intergenic | 40.0% |
| ! | ATATGATGTGGAGTGCTACA+AGG | + | chr1_1:34284152-34284171 | None:intergenic | 40.0% |
| ! | GTAAACAAAACCGCATTGGT+CGG | - | chr1_1:34284187-34284206 | Msa0019640:intron | 40.0% |
| GGTTTAATTACTGTGGGTAG+TGG | - | chr1_1:34284341-34284360 | Msa0019640:intron | 40.0% | |
| AACACTATAGTGGCCCTAAA+AGG | + | chr1_1:34284475-34284494 | None:intergenic | 40.0% | |
| TTTGCATGGGAACACTATAG+TGG | + | chr1_1:34284485-34284504 | None:intergenic | 40.0% | |
| TATAGTGTTCCCATGCAAAC+AGG | - | chr1_1:34284486-34284505 | Msa0019640:CDS | 40.0% | |
| GCAATGGTCCATGTAATCAA+TGG | + | chr1_1:34284673-34284692 | None:intergenic | 40.0% | |
| CATCAAGTAAGTAGAGGGAA+GGG | - | chr1_1:34284764-34284783 | Msa0019640:intron | 40.0% | |
| GTTGTAAAACCTTGGCTGAA+AGG | + | chr1_1:34285260-34285279 | None:intergenic | 40.0% | |
| ! | ACTCTCGAGTTGTAAAACCT+TGG | + | chr1_1:34285268-34285287 | None:intergenic | 40.0% |
| ! | GGAACAACGTGTTACTGTAA+AGG | - | chr1_1:34285802-34285821 | Msa0019640:intron | 40.0% |
| AGTCTTTGGGCTTGTAGAAA+AGG | - | chr1_1:34285846-34285865 | Msa0019640:intron | 40.0% | |
| TGGGCTTGTAGAAAAGGAAT+TGG | - | chr1_1:34285852-34285871 | Msa0019640:intron | 40.0% | |
| GGGCTTGTAGAAAAGGAATT+GGG | - | chr1_1:34285853-34285872 | Msa0019640:intron | 40.0% | |
| !! | CGATTTCTGGTAAATTCGGA+AGG | + | chr1_1:34285994-34286013 | None:intergenic | 40.0% |
| CCAAAATTGTGTTAACTCGG+AGG | + | chr1_1:34286023-34286042 | None:intergenic | 40.0% | |
| ! | CCTCCGAGTTAACACAATTT+TGG | - | chr1_1:34286020-34286039 | Msa0019640:intron | 40.0% |
| ! | GAGTGTTAACACTCGATTTG+CGG | - | chr1_1:34286072-34286091 | Msa0019640:intron | 40.0% |
| ! | CATTGCTTTCAGCACACTTT+TGG | - | chr1_1:34286097-34286116 | Msa0019640:intron | 40.0% |
| TGGTTAACGGAGGTAAAAGA+GGG | + | chr1_1:34286314-34286333 | None:intergenic | 40.0% | |
| ! | TCTTTGTCGGTTGTATTGAG+GGG | + | chr1_1:34286423-34286442 | None:intergenic | 40.0% |
| ! | AACTACCCTTTCAGCACTTT+TGG | - | chr1_1:34286563-34286582 | Msa0019640:intron | 40.0% |
| ! | ACTACCCTTTCAGCACTTTT+GGG | - | chr1_1:34286564-34286583 | Msa0019640:intron | 40.0% |
| AACTCCTATAGGCATTTGCT+AGG | - | chr1_1:34286890-34286909 | Msa0019640:intron | 40.0% | |
| GTATCCTAGCAAATGCCTAT+AGG | + | chr1_1:34286897-34286916 | None:intergenic | 40.0% | |
| ACTCCCACATAAAAACCAGT+GGG | - | chr1_1:34287002-34287021 | Msa0019640:CDS | 40.0% | |
| !!! | ACACCCACTGGTTTTTATGT+GGG | + | chr1_1:34287008-34287027 | None:intergenic | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr1_1:34287459-34287478 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr1_1:34287458-34287477 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr1_1:34287458-34287477 | Msa0019640:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr1_1:34287459-34287478 | Msa0019640:intron | 40.0% |
| ! | TTGTCATTTGACGAGGTTGA+AGG | - | chr1_1:34288467-34288486 | Msa0019640:intron | 40.0% |
| ! | TGTCATTTGACGAGGTTGAA+GGG | - | chr1_1:34288468-34288487 | Msa0019640:intron | 40.0% |
| ATCATAACAGGAAGCAATGC+TGG | - | chr1_1:34288682-34288701 | Msa0019640:intron | 40.0% | |
| GAAGGGAAAATAGGAGAAGA+TGG | - | chr1_1:34288973-34288992 | Msa0019640:intron | 40.0% | |
| TTCTTAGGATTCCTTTGCGT+CGG | - | chr1_1:34289611-34289630 | Msa0019640:intron | 40.0% | |
| ! | CTACAAGGGTAACATTTTGG+AGG | + | chr1_1:34289732-34289751 | None:intergenic | 40.0% |
| TGCTGTAGCTAATCCAAAAG+AGG | - | chr1_1:34290197-34290216 | Msa0019640:intron | 40.0% | |
| TGTAGCTAATCCAAAAGAGG+TGG | - | chr1_1:34290200-34290219 | Msa0019640:intron | 40.0% | |
| TGTAGAAAGAAAGAGAGGGA+GGG | + | chr1_1:34290248-34290267 | None:intergenic | 40.0% | |
| ATGTAGAAAGAAAGAGAGGG+AGG | + | chr1_1:34290249-34290268 | None:intergenic | 40.0% | |
| TAGGGACTAGACATGTAATG+TGG | - | chr1_1:34290495-34290514 | Msa0019640:intron | 40.0% | |
| GACTAGACATGTAATGTGGT+AGG | - | chr1_1:34290499-34290518 | Msa0019640:intron | 40.0% | |
| TGTAATGTGGTAGGGTATAG+TGG | - | chr1_1:34290508-34290527 | Msa0019640:intron | 40.0% | |
| AGAGAAAAATGGGTGAGTTG+GGG | + | chr1_1:34290580-34290599 | None:intergenic | 40.0% | |
| CAGAGAAAAATGGGTGAGTT+GGG | + | chr1_1:34290581-34290600 | None:intergenic | 40.0% | |
| CACTATCTTCCCTTATCATG+TGG | - | chr1_1:34291051-34291070 | Msa0019640:intron | 40.0% | |
| TGATTTCACGGTGGAATCTA+AGG | + | chr1_1:34291353-34291372 | None:intergenic | 40.0% | |
| ! | GTGTGTATTTGATTTCACGG+TGG | + | chr1_1:34291362-34291381 | None:intergenic | 40.0% |
| ! | TTCTTCTTTCAGTGCTGTTC+TGG | + | chr1_1:34291466-34291485 | None:intergenic | 40.0% |
| !! | TCCTGTTTTGTTGCCAATTG+CGG | + | chr1_1:34291547-34291566 | None:intergenic | 40.0% |
| TAACAGGGTCATCATCTCTT+GGG | + | chr1_1:34291649-34291668 | None:intergenic | 40.0% | |
| TTAACAGGGTCATCATCTCT+TGG | + | chr1_1:34291650-34291669 | None:intergenic | 40.0% | |
| CAATCCAAAGTGGTCTATCT+TGG | + | chr1_1:34291706-34291725 | None:intergenic | 40.0% | |
| CTCTTGAACACAATCCAAAG+TGG | + | chr1_1:34291716-34291735 | None:intergenic | 40.0% | |
| GATTGTGTTCAAGAGAGACA+TGG | - | chr1_1:34291721-34291740 | Msa0019640:intron | 40.0% | |
| !! | GCTCAGAAACACATTTTGGT+TGG | - | chr1_1:34291918-34291937 | Msa0019640:intron | 40.0% |
| !!! | CAGAAACACATTTTGGTTGG+AGG | - | chr1_1:34291921-34291940 | Msa0019640:intron | 40.0% |
| !!! | ACATTTTGGTTGGAGGACTA+TGG | - | chr1_1:34291928-34291947 | Msa0019640:intron | 40.0% |
| GCAAATTCAGGTGATTCTGT+TGG | - | chr1_1:34292249-34292268 | Msa0019640:intron | 40.0% | |
| GAATAAGACCCTCTCCAAAA+TGG | + | chr1_1:34292330-34292349 | None:intergenic | 40.0% | |
| ! | GTCTTATTCAGAGAATGCCA+CGG | - | chr1_1:34292341-34292360 | Msa0019640:intron | 40.0% |
| GTGAAAGGGAGAAAAAAAGG+GGG | + | chr1_1:34292396-34292415 | None:intergenic | 40.0% | |
| CAACAAACCAACCTGTCTTA+TGG | + | chr1_1:34292445-34292464 | None:intergenic | 40.0% | |
| ! | TTGTCTGCAACAACCCTTTT+TGG | - | chr1_1:34292462-34292481 | Msa0019640:intron | 40.0% |
| GAAAAATGCAGGTGTAGACA+TGG | - | chr1_1:34292690-34292709 | Msa0019640:intron | 40.0% | |
| CACTGGGAAATGTATGCTAT+TGG | - | chr1_1:34292744-34292763 | Msa0019640:intron | 40.0% | |
| TGGGAAATGTATGCTATTGG+TGG | - | chr1_1:34292747-34292766 | Msa0019640:intron | 40.0% | |
| ! | TCTTTGGCAAAAGGGTTAGT+AGG | + | chr1_1:34292819-34292838 | None:intergenic | 40.0% |
| ! | TACTAACCCTTTTGCCAAAG+AGG | - | chr1_1:34292818-34292837 | Msa0019640:intron | 40.0% |
| ! | AGATTTTGCTCCTAAGCTAG+AGG | + | chr1_1:34293188-34293207 | None:intergenic | 40.0% |
| AGGAGCAAAATCTTCTGCTA+TGG | - | chr1_1:34293195-34293214 | Msa0019640:intron | 40.0% | |
| GCAAAATCTTCTGCTATGGT+TGG | - | chr1_1:34293199-34293218 | Msa0019640:intron | 40.0% | |
| GGTACAATGACTTCAAATGC+TGG | - | chr1_1:34293220-34293239 | Msa0019640:intron | 40.0% | |
| TGTACACTTGTCAAGAATGC+AGG | + | chr1_1:34293401-34293420 | None:intergenic | 40.0% | |
| ! | AAGTTGAGCAGCTAAGGTTT+TGG | + | chr1_1:34293464-34293483 | None:intergenic | 40.0% |
| ATGAGGTGTGAAGAACCAAA+AGG | + | chr1_1:34293554-34293573 | None:intergenic | 40.0% | |
| !! | GTAAGGTTGGTGATGAAATG+AGG | + | chr1_1:34293571-34293590 | None:intergenic | 40.0% |
| ! | TATGAATTGGTGGGTAAGGT+TGG | + | chr1_1:34293584-34293603 | None:intergenic | 40.0% |
| ! | TGCATATGAATTGGTGGGTA+AGG | + | chr1_1:34293588-34293607 | None:intergenic | 40.0% |
| GGGAGACATGATTTGACATA+TGG | + | chr1_1:34293618-34293637 | None:intergenic | 40.0% | |
| AGGACTGAACAAGTGTGTAA+GGG | + | chr1_1:34293638-34293657 | None:intergenic | 40.0% | |
| AAGGACTGAACAAGTGTGTA+AGG | + | chr1_1:34293639-34293658 | None:intergenic | 40.0% | |
| TCAAGAGCCTCAAAATCCCA+AGG | + | chr1_1:34283226-34283245 | None:intergenic | 45.0% | |
| !! | CACACCTACTTGTTGTGTGA+GGG | - | chr1_1:34283256-34283275 | Msa0019640:three_prime_UTR | 45.0% |
| AAACTGGGCCAAATTCGCTA+TGG | + | chr1_1:34283302-34283321 | None:intergenic | 45.0% | |
| ! | GCGAATTTGGCCCAGTTTTT+AGG | - | chr1_1:34283304-34283323 | Msa0019640:three_prime_UTR | 45.0% |
| !!! | TTGGCCCAGTTTTTAGGTCT+TGG | - | chr1_1:34283310-34283329 | Msa0019640:three_prime_UTR | 45.0% |
| !! | TTCAATCGAGAGGGTATTGG+GGG | + | chr1_1:34284099-34284118 | None:intergenic | 45.0% |
| ACTAAACTCACCGACCAATG+CGG | + | chr1_1:34284200-34284219 | None:intergenic | 45.0% | |
| GCATCAAGTAAGTAGAGGGA+AGG | - | chr1_1:34284763-34284782 | Msa0019640:intron | 45.0% | |
| GAAAACTACCCTTTCAGCCA+AGG | - | chr1_1:34285248-34285267 | Msa0019640:CDS | 45.0% | |
| TACGTAGGCAAAACGAGTTG+AGG | + | chr1_1:34285294-34285313 | None:intergenic | 45.0% | |
| TTCTCGAGTCGAGTTTACGT+AGG | + | chr1_1:34285309-34285328 | None:intergenic | 45.0% | |
| AGTTACGGTTGCGATTCCAA+CGG | + | chr1_1:34285716-34285735 | None:intergenic | 45.0% | |
| TCGGAGGTAAACTCGATTTC+TGG | + | chr1_1:34286007-34286026 | None:intergenic | 45.0% | |
| GAGGTAAAAGAGGGTTAACG+GGG | + | chr1_1:34286305-34286324 | None:intergenic | 45.0% | |
| GGAGGTAAAAGAGGGTTAAC+GGG | + | chr1_1:34286306-34286325 | None:intergenic | 45.0% | |
| CGGAGGTAAAAGAGGGTTAA+CGG | + | chr1_1:34286307-34286326 | None:intergenic | 45.0% | |
| GTGGTTAACGGAGGTAAAAG+AGG | + | chr1_1:34286315-34286334 | None:intergenic | 45.0% | |
| GTTTGATCTGTGGTTAACGG+AGG | + | chr1_1:34286324-34286343 | None:intergenic | 45.0% | |
| !! | CCAACCCAAAAGTGCTGAAA+GGG | + | chr1_1:34286571-34286590 | None:intergenic | 45.0% |
| !! | TCCAACCCAAAAGTGCTGAA+AGG | + | chr1_1:34286572-34286591 | None:intergenic | 45.0% |
| CACTCCCACATAAAAACCAG+TGG | - | chr1_1:34287001-34287020 | Msa0019640:CDS | 45.0% | |
| !!! | CACACCCACTGGTTTTTATG+TGG | + | chr1_1:34287009-34287028 | None:intergenic | 45.0% |
| ! | ATTTGCTAGAACACACCCAC+TGG | + | chr1_1:34287020-34287039 | None:intergenic | 45.0% |
| GCACCCACCTAAAAACACTA+AGG | - | chr1_1:34287110-34287129 | Msa0019640:intron | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | + | chr1_1:34287110-34287129 | None:intergenic | 45.0% | |
| ! | TTAGTTCTTCCCCTGGAAAC+TGG | + | chr1_1:34288442-34288461 | None:intergenic | 45.0% |
| GTCATTTGACGAGGTTGAAG+GGG | - | chr1_1:34288469-34288488 | Msa0019640:intron | 45.0% | |
| AGAAAACACAACCGACGCAA+AGG | + | chr1_1:34289625-34289644 | None:intergenic | 45.0% | |
| TTGTTGACGGTTAACGCTAG+TGG | + | chr1_1:34289684-34289703 | None:intergenic | 45.0% | |
| TCCAAAAGAGGTGGCTTCTA+TGG | - | chr1_1:34290209-34290228 | Msa0019640:intron | 45.0% | |
| ! | ACCATAGAAGCCACCTCTTT+TGG | + | chr1_1:34290213-34290232 | None:intergenic | 45.0% |
| TGGCTTCTATGGTTGAGATG+TGG | - | chr1_1:34290220-34290239 | Msa0019640:intron | 45.0% | |
| GGCTTCTATGGTTGAGATGT+GGG | - | chr1_1:34290221-34290240 | Msa0019640:intron | 45.0% | |
| ! | AAAATGGGTGAGTTGGGGTA+GGG | + | chr1_1:34290575-34290594 | None:intergenic | 45.0% |
| ! | AAAAATGGGTGAGTTGGGGT+AGG | + | chr1_1:34290576-34290595 | None:intergenic | 45.0% |
| GCAGAGAAAAATGGGTGAGT+TGG | + | chr1_1:34290582-34290601 | None:intergenic | 45.0% | |
| GCTACTAGCATCACGTTGTA+AGG | + | chr1_1:34290922-34290941 | None:intergenic | 45.0% | |
| ! | GGATTTTTCTCCTGTGGAAC+CGG | - | chr1_1:34291491-34291510 | Msa0019640:intron | 45.0% |
| GCAATCGTCAATAGGGTTAC+CGG | + | chr1_1:34291513-34291532 | None:intergenic | 45.0% | |
| GTAACCCTATTGACGATTGC+TGG | - | chr1_1:34291513-34291532 | Msa0019640:intron | 45.0% | |
| AACGCCAGCAATCGTCAATA+GGG | + | chr1_1:34291520-34291539 | None:intergenic | 45.0% | |
| ACCGCAATTGGCAACAAAAC+AGG | - | chr1_1:34291543-34291562 | Msa0019640:intron | 45.0% | |
| !! | GCAGACTGTGGTATTGGTTT+CGG | - | chr1_1:34291575-34291594 | Msa0019640:intron | 45.0% |
| GGTTTCGGTAGAAATGCCAT+TGG | - | chr1_1:34291590-34291609 | Msa0019640:intron | 45.0% | |
| TTCGGTAGAAATGCCATTGG+TGG | - | chr1_1:34291593-34291612 | Msa0019640:intron | 45.0% | |
| ATGATGACCCTGTTAACCCT+AGG | - | chr1_1:34291654-34291673 | Msa0019640:intron | 45.0% | |
| TGCACCCTCCATTAGCAATA+TGG | + | chr1_1:34291814-34291833 | None:intergenic | 45.0% | |
| CTCACCATAGCATTACCAGT+AGG | + | chr1_1:34291896-34291915 | None:intergenic | 45.0% | |
| TCTCTCTCTCATTGTGCTGA+TGG | - | chr1_1:34292007-34292026 | Msa0019640:intron | 45.0% | |
| !! | TGGTCTTGTTGATGCTGTCA+TGG | - | chr1_1:34292027-34292046 | Msa0019640:intron | 45.0% |
| !! | GGTCTTGTTGATGCTGTCAT+GGG | - | chr1_1:34292028-34292047 | Msa0019640:intron | 45.0% |
| !! | CCTCATTGTGATGGGTTAAG+TGG | + | chr1_1:34292081-34292100 | None:intergenic | 45.0% |
| CCACTTAACCCATCACAATG+AGG | - | chr1_1:34292078-34292097 | Msa0019640:intron | 45.0% | |
| GTAGTACATGTGTGTGTGTC+CGG | - | chr1_1:34292129-34292148 | Msa0019640:intron | 45.0% | |
| CATCTGCTTGTCTCTAGTGT+AGG | + | chr1_1:34292287-34292306 | None:intergenic | 45.0% | |
| ! | TTACCCTGGCTGTTGATTGT+GGG | + | chr1_1:34292783-34292802 | None:intergenic | 45.0% |
| ! | GAGCATTGTATCTGTTACCC+TGG | + | chr1_1:34292797-34292816 | None:intergenic | 45.0% |
| TTGGCAGGTAACTAAGAGAG+TGG | - | chr1_1:34293048-34293067 | Msa0019640:intron | 45.0% | |
| TGGAAACAGCTGAAACTCAG+TGG | - | chr1_1:34293068-34293087 | Msa0019640:intron | 45.0% | |
| ACAGCTGAAACTCAGTGGAA+AGG | - | chr1_1:34293073-34293092 | Msa0019640:intron | 45.0% | |
| CTGAAACTCAGTGGAAAGGT+TGG | - | chr1_1:34293077-34293096 | Msa0019640:intron | 45.0% | |
| CTCAGTGGAAAGGTTGGAAT+TGG | - | chr1_1:34293083-34293102 | Msa0019640:intron | 45.0% | |
| AGGTTGGAATTGGAGATCAG+AGG | - | chr1_1:34293093-34293112 | Msa0019640:intron | 45.0% | |
| GGTTGGAATTGGAGATCAGA+GGG | - | chr1_1:34293094-34293113 | Msa0019640:intron | 45.0% | |
| GGTGCATATTTCACAGCATC+TGG | - | chr1_1:34293133-34293152 | Msa0019640:intron | 45.0% | |
| TATTTCACAGCATCTGGTGC+TGG | - | chr1_1:34293139-34293158 | Msa0019640:intron | 45.0% | |
| ! | TATGCAAGAGCCTCTAGCTT+AGG | - | chr1_1:34293175-34293194 | Msa0019640:intron | 45.0% |
| ACTTCAAATGCTGGTGCACT+AGG | - | chr1_1:34293229-34293248 | Msa0019640:intron | 45.0% | |
| !! | CTAAAAAAAATTAAATTTAT+AGG | - | chr1_1:34285087-34285106 | Msa0019640:intron | 5.0% |
| !!! | ACAATAATAAATTTAATTTA+AGG | - | chr1_1:34286188-34286207 | Msa0019640:intron | 5.0% |
| !! | TTATTTATATTAAAAATTGA+GGG | + | chr1_1:34286613-34286632 | None:intergenic | 5.0% |
| !! | ATATATATAAATATACATAT+AGG | - | chr1_1:34286732-34286751 | Msa0019640:intron | 5.0% |
| !! | TATATATAAATATACATATA+GGG | - | chr1_1:34286733-34286752 | Msa0019640:intron | 5.0% |
| !! | CTATATATATATATATATAT+GGG | + | chr1_1:34287043-34287062 | None:intergenic | 5.0% |
| !! | CATATATATATATATATATA+GGG | - | chr1_1:34287042-34287061 | Msa0019640:intron | 5.0% |
| !!! | TAAACTTTATTTTAATTATA+AGG | - | chr1_1:34287345-34287364 | Msa0019640:intron | 5.0% |
| ACAAGTAGGTGTGCTCGCAA+CGG | + | chr1_1:34283249-34283268 | None:intergenic | 50.0% | |
| !! | GCACACCTACTTGTTGTGTG+AGG | - | chr1_1:34283255-34283274 | Msa0019640:three_prime_UTR | 50.0% |
| CACACCCTCACACAACAAGT+AGG | + | chr1_1:34283263-34283282 | None:intergenic | 50.0% | |
| TGTTCCCATGCAAACAGGCA+AGG | - | chr1_1:34284491-34284510 | Msa0019640:CDS | 50.0% | |
| GTCACCTTGCCTGTTTGCAT+GGG | + | chr1_1:34284498-34284517 | None:intergenic | 50.0% | |
| AGTCACCTTGCCTGTTTGCA+TGG | + | chr1_1:34284499-34284518 | None:intergenic | 50.0% | |
| ACCATTGCTCATACCTCGCA+TGG | - | chr1_1:34284685-34284704 | Msa0019640:intron | 50.0% | |
| CCATTGCTCATACCTCGCAT+GGG | - | chr1_1:34284686-34284705 | Msa0019640:intron | 50.0% | |
| GCACATAACTAACCCATGCG+AGG | + | chr1_1:34284701-34284720 | None:intergenic | 50.0% | |
| AACGGGGACGATTAGTGACA+TGG | + | chr1_1:34286289-34286308 | None:intergenic | 50.0% | |
| !! | CCCTTTCAGCACTTTTGGGT+TGG | - | chr1_1:34286568-34286587 | Msa0019640:intron | 50.0% |
| GGGACACGATTGTTATGTCG+TGG | - | chr1_1:34288631-34288650 | Msa0019640:intron | 50.0% | |
| CCATGGCTGAAAACATGTCG+TGG | + | chr1_1:34288892-34288911 | None:intergenic | 50.0% | |
| ! | CCACGACATGTTTTCAGCCA+TGG | - | chr1_1:34288889-34288908 | Msa0019640:intron | 50.0% |
| !! | AATAGGGTTACCGGTTCCAC+AGG | + | chr1_1:34291504-34291523 | None:intergenic | 50.0% |
| CAACGCCAGCAATCGTCAAT+AGG | + | chr1_1:34291521-34291540 | None:intergenic | 50.0% | |
| CGTCTAGCAGACTGTGGTAT+TGG | - | chr1_1:34291569-34291588 | Msa0019640:intron | 50.0% | |
| TTCCTGGCCTAGGGTTAACA+GGG | + | chr1_1:34291664-34291683 | None:intergenic | 50.0% | |
| ! | GTCTATCTTGGATAACGGCG+TGG | + | chr1_1:34291694-34291713 | None:intergenic | 50.0% |
| CATTGGCACATGTCAGACAC+CGG | + | chr1_1:34292151-34292170 | None:intergenic | 50.0% | |
| ! | CATGTGTCGGTGTTCGACAT+TGG | + | chr1_1:34292168-34292187 | None:intergenic | 50.0% |
| TAACCCCACAATCAACAGCC+AGG | - | chr1_1:34292776-34292795 | Msa0019640:intron | 50.0% | |
| AACCCCACAATCAACAGCCA+GGG | - | chr1_1:34292777-34292796 | Msa0019640:intron | 50.0% | |
| ! | TACCCTGGCTGTTGATTGTG+GGG | + | chr1_1:34292782-34292801 | None:intergenic | 50.0% |
| ! | GTTACCCTGGCTGTTGATTG+TGG | + | chr1_1:34292784-34292803 | None:intergenic | 50.0% |
| ! | TGGAGCAAGTTGAGCAGCTA+AGG | + | chr1_1:34293470-34293489 | None:intergenic | 50.0% |
| AGGCAAGGTGACTCCCATGA+TGG | - | chr1_1:34284506-34284525 | Msa0019640:intron | 55.0% | |
| CGTGGGGACTTTGCCATCAT+GGG | + | chr1_1:34284522-34284541 | None:intergenic | 55.0% | |
| CCCATGCGAGGTATGAGCAA+TGG | + | chr1_1:34284689-34284708 | None:intergenic | 55.0% | |
| CGATGATTGCGAGCCGGTTA+GGG | + | chr1_1:34285672-34285691 | None:intergenic | 55.0% | |
| !! | CCTAACCGGCTCGCAATCAT+CGG | - | chr1_1:34285670-34285689 | Msa0019640:CDS | 55.0% |
| TACGGTTGCGATTCCAACGG+TGG | + | chr1_1:34285713-34285732 | None:intergenic | 55.0% | |
| ! | TGCATCGTCTCGCATTGACG+TGG | - | chr1_1:34290371-34290390 | Msa0019640:intron | 55.0% |
| ! | GTGAGTTGGGGTAGGGTGTT+AGG | + | chr1_1:34290568-34290587 | None:intergenic | 55.0% |
| !! | AGGAAGCGTCTAGCAGACTG+TGG | - | chr1_1:34291563-34291582 | Msa0019640:intron | 55.0% |
| ! | AATGCCATTGGTGGTCGCGA+CGG | - | chr1_1:34291602-34291621 | Msa0019640:intron | 55.0% |
| GTTCCTGGCCTAGGGTTAAC+AGG | + | chr1_1:34291665-34291684 | None:intergenic | 55.0% | |
| GGTTGGAGGACTATGGCTGA+TGG | - | chr1_1:34291935-34291954 | Msa0019640:intron | 55.0% | |
| GGTGCACTAGGCTGCAAAAG+AGG | - | chr1_1:34293241-34293260 | Msa0019640:intron | 55.0% | |
| GCGTGGGGACTTTGCCATCA+TGG | + | chr1_1:34284523-34284542 | None:intergenic | 60.0% | |
| TCCCCACGCTTGTGTGTCTG+CGG | - | chr1_1:34284534-34284553 | Msa0019640:intron | 60.0% | |
| AGCCGCAGACACACAAGCGT+GGG | + | chr1_1:34284539-34284558 | None:intergenic | 60.0% | |
| TAGCCGCAGACACACAAGCG+TGG | + | chr1_1:34284540-34284559 | None:intergenic | 60.0% | |
| ACCACCACCGCAACCCTAAC+CGG | - | chr1_1:34285656-34285675 | Msa0019640:CDS | 60.0% | |
| TTGCGAGCCGGTTAGGGTTG+CGG | + | chr1_1:34285666-34285685 | None:intergenic | 60.0% | |
| CCGATGATTGCGAGCCGGTT+AGG | + | chr1_1:34285673-34285692 | None:intergenic | 60.0% | |
| CGAAGCCGATGATTGCGAGC+CGG | + | chr1_1:34285678-34285697 | None:intergenic | 60.0% | |
| GCTGGCGTTGTGACCGCAAT+TGG | - | chr1_1:34291531-34291550 | Msa0019640:intron | 60.0% | |
| CTTTCCGTCGCGACCACCAA+TGG | + | chr1_1:34291609-34291628 | None:intergenic | 60.0% | |
| GACCCTGTTAACCCTAGGCC+AGG | - | chr1_1:34291659-34291678 | Msa0019640:intron | 60.0% | |
| GGCGCAAAGTTCCTGGCCTA+GGG | + | chr1_1:34291673-34291692 | None:intergenic | 60.0% | |
| TGGCGCAAAGTTCCTGGCCT+AGG | + | chr1_1:34291674-34291693 | None:intergenic | 60.0% | |
| GCCGCAGACACACAAGCGTG+GGG | + | chr1_1:34284538-34284557 | None:intergenic | 65.0% | |
| ACGGCGTGGCGCAAAGTTCC+TGG | + | chr1_1:34291680-34291699 | None:intergenic | 65.0% | |
| GCCGGTTAGGGTTGCGGTGG+TGG | + | chr1_1:34285660-34285679 | None:intergenic | 70.0% | |
| CGAGCCGGTTAGGGTTGCGG+TGG | + | chr1_1:34285663-34285682 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 34283172 | 34294039 | 34283172 | ID=Msa0019640;Name=Msa0019640 |
| chr1_1 | mRNA | 34283172 | 34294039 | 34283172 | ID=Msa0019640-mRNA-1;Parent=Msa0019640;Name=Msa0019640-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.8|0.66|0.83|1|1|6|763|442 |
| chr1_1 | exon | 34283172 | 34284156 | 34283172 | ID=Msa0019640-mRNA-1:exon:10906;Parent=Msa0019640-mRNA-1 |
| chr1_1 | exon | 34284372 | 34284510 | 34284372 | ID=Msa0019640-mRNA-1:exon:10905;Parent=Msa0019640-mRNA-1 |
| chr1_1 | exon | 34284849 | 34284952 | 34284849 | ID=Msa0019640-mRNA-1:exon:10904;Parent=Msa0019640-mRNA-1 |
| chr1_1 | exon | 34285112 | 34285754 | 34285112 | ID=Msa0019640-mRNA-1:exon:10903;Parent=Msa0019640-mRNA-1 |
| chr1_1 | exon | 34286973 | 34287047 | 34286973 | ID=Msa0019640-mRNA-1:exon:10902;Parent=Msa0019640-mRNA-1 |
| chr1_1 | exon | 34293894 | 34294039 | 34293894 | ID=Msa0019640-mRNA-1:exon:10901;Parent=Msa0019640-mRNA-1 |
| chr1_1 | CDS | 34293894 | 34294039 | 34293894 | ID=Msa0019640-mRNA-1:cds;Parent=Msa0019640-mRNA-1 |
| chr1_1 | CDS | 34286973 | 34287047 | 34286973 | ID=Msa0019640-mRNA-1:cds;Parent=Msa0019640-mRNA-1 |
| chr1_1 | CDS | 34285112 | 34285754 | 34285112 | ID=Msa0019640-mRNA-1:cds;Parent=Msa0019640-mRNA-1 |
| chr1_1 | CDS | 34284849 | 34284952 | 34284849 | ID=Msa0019640-mRNA-1:cds;Parent=Msa0019640-mRNA-1 |
| chr1_1 | CDS | 34284372 | 34284510 | 34284372 | ID=Msa0019640-mRNA-1:cds;Parent=Msa0019640-mRNA-1 |
| chr1_1 | CDS | 34283935 | 34284156 | 34283935 | ID=Msa0019640-mRNA-1:cds;Parent=Msa0019640-mRNA-1 |
| chr1_1 | three_prime_UTR | 34283172 | 34283934 | 34283172 | ID=Msa0019640-mRNA-1:three_prime_utr;Parent=Msa0019640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
