Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081710 | XP_003591419.1 | 93.939 | 66 | 4 | 0 | 14 | 79 | 125 | 190 | 2.51e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081710 | G7IDR9 | 93.939 | 66 | 4 | 0 | 14 | 79 | 125 | 190 | 1.20e-37 | 134 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028170 | Msa0081710 | 0.870183 | 1.768822e-66 | -8.615850e-47 |
| Msa0081710 | Msa0128220 | 0.881933 | 1.589638e-70 | -8.615850e-47 |
| Msa0081710 | Msa0174320 | 0.903765 | 2.473585e-79 | -8.615850e-47 |
| Msa0081710 | Msa0277450 | 0.807059 | 6.080167e-50 | -8.615850e-47 |
| Msa0081710 | Msa1353470 | 0.804389 | 2.212000e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081710 | MtrunA17_Chr1g0194831 | 93.939 | 66 | 4 | 0 | 14 | 79 | 110 | 175 | 2.74e-41 | 133 |
| Msa0081710 | MtrunA17_Chr7g0269881 | 64.151 | 53 | 17 | 1 | 28 | 78 | 137 | 189 | 2.63e-17 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAATGTGATTGTGAATT+TGG | 0.218381 | 1_2:+60380477 | None:intergenic |
| GGGATTAGAACATTGATTTA+TGG | 0.229629 | 1_2:-60379606 | Msa0081710:CDS |
| TATTTGAATAGGCAGATTTC+AGG | 0.248523 | 1_2:-60379967 | Msa0081710:CDS |
| TGATTTGGGTTGCGTTATAT+TGG | 0.301838 | 1_2:+60380532 | None:intergenic |
| GATTTGGGTTGCGTTATATT+GGG | 0.309638 | 1_2:+60380533 | None:intergenic |
| GCCTAGCTTGGATACTATTA+AGG | 0.311308 | 1_2:-60379932 | Msa0081710:CDS |
| ATCTGCCTATTCAAATAATC+TGG | 0.371640 | 1_2:+60379973 | None:intergenic |
| GGAAGAGGTGATGGAGGAGA+AGG | 0.379095 | 1_2:-60380046 | Msa0081710:CDS |
| GGAGAATTTGCCGGACATAT+TGG | 0.397303 | 1_2:-60380004 | Msa0081710:CDS |
| GGTTGCGTTATATTGGGGTT+GGG | 0.407877 | 1_2:+60380539 | None:intergenic |
| ACTAGTTATTATCTTTAAGA+TGG | 0.414570 | 1_2:-60380454 | Msa0081710:exon |
| TTTCGTCCTTCAGATTCAAC+AGG | 0.424376 | 1_2:-60380417 | Msa0081710:intron |
| GGAGGCCAGATTATTTGAAT+AGG | 0.439315 | 1_2:-60379978 | Msa0081710:CDS |
| GGGTTGCGTTATATTGGGGT+TGG | 0.450106 | 1_2:+60380538 | None:intergenic |
| CTAGTTATTATCTTTAAGAT+GGG | 0.465652 | 1_2:-60380453 | Msa0081710:exon |
| GAAGAGGTGATGGAGGAGAA+GGG | 0.490391 | 1_2:-60380045 | Msa0081710:CDS |
| TTTAATTTAGTGAAATCAGA+AGG | 0.505259 | 1_2:-60379627 | Msa0081710:intron |
| GAAAGGGTGGAAGCCTAGCT+TGG | 0.506451 | 1_2:-60379944 | Msa0081710:CDS |
| TCGGAGGAAGGAAGAGGTGA+TGG | 0.513945 | 1_2:-60380055 | Msa0081710:CDS |
| ATTTGAATAGGCAGATTTCA+GGG | 0.521145 | 1_2:-60379966 | Msa0081710:CDS |
| AATAGGCAGATTTCAGGGAA+AGG | 0.530769 | 1_2:-60379961 | Msa0081710:CDS |
| GGCCTCCCTTCCAATATGTC+CGG | 0.533242 | 1_2:+60379994 | None:intergenic |
| ATAGGCAGATTTCAGGGAAA+GGG | 0.549284 | 1_2:-60379960 | Msa0081710:CDS |
| GGAGCCTCGGAGGAAGGAAG+AGG | 0.553960 | 1_2:-60380061 | Msa0081710:CDS |
| ACTTTACCTGTTGAATCTGA+AGG | 0.560942 | 1_2:+60380411 | None:intergenic |
| AATTTGCCGGACATATTGGA+AGG | 0.563693 | 1_2:-60380000 | Msa0081710:CDS |
| ATTTGGGTTGCGTTATATTG+GGG | 0.567607 | 1_2:+60380534 | None:intergenic |
| TCCTTAATAGTATCCAAGCT+AGG | 0.569966 | 1_2:+60379931 | None:intergenic |
| AATAGTGGAGCCTCGGAGGA+AGG | 0.571841 | 1_2:-60380067 | Msa0081710:intron |
| ACAGTGAAATAGTGGAGCCT+CGG | 0.582711 | 1_2:-60380074 | Msa0081710:intron |
| GAGGAAGGAAGAGGTGATGG+AGG | 0.589938 | 1_2:-60380052 | Msa0081710:CDS |
| GGCAGATTTCAGGGAAAGGG+TGG | 0.595138 | 1_2:-60379957 | Msa0081710:CDS |
| TTAATTTAGTGAAATCAGAA+GGG | 0.607405 | 1_2:-60379626 | Msa0081710:intron |
| TGCCGGACATATTGGAAGGG+AGG | 0.607569 | 1_2:-60379996 | Msa0081710:CDS |
| GTGAAATAGTGGAGCCTCGG+AGG | 0.619098 | 1_2:-60380071 | Msa0081710:intron |
| ACGTGCATACTTGGGATGCA+TGG | 0.625338 | 1_2:+60379574 | None:intergenic |
| ATTTGCCGGACATATTGGAA+GGG | 0.657578 | 1_2:-60379999 | Msa0081710:CDS |
| ATCACCTCTTCCTTCCTCCG+AGG | 0.665878 | 1_2:+60380057 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAAATAAAGTGTGATTT+GGG | + | chr1_2:60379646-60379665 | None:intergenic | 20.0% |
| !! | ACTAAAAATAAAGTGTGATT+TGG | + | chr1_2:60379647-60379666 | None:intergenic | 20.0% |
| !!! | ACTAGTTATTATCTTTAAGA+TGG | - | chr1_2:60379707-60379726 | Msa0081710:intron | 20.0% |
| !!! | CTAGTTATTATCTTTAAGAT+GGG | - | chr1_2:60379708-60379727 | Msa0081710:intron | 20.0% |
| !!! | TGGTATAGTTATTTTAGTTT+TGG | - | chr1_2:60380305-60380324 | Msa0081710:intron | 20.0% |
| !! | GTTATAGTAGTTAAATATTG+TGG | - | chr1_2:60380327-60380346 | Msa0081710:intron | 20.0% |
| !!! | TTAAATATTGTGGATTAATG+TGG | - | chr1_2:60380337-60380356 | Msa0081710:intron | 20.0% |
| !!! | TTTAATTTAGTGAAATCAGA+AGG | - | chr1_2:60380534-60380553 | Msa0081710:five_prime_UTR | 20.0% |
| !! | TTAATTTAGTGAAATCAGAA+GGG | - | chr1_2:60380535-60380554 | Msa0081710:five_prime_UTR | 20.0% |
| !! | CTAAAAATAAAGTGTGATTT+GGG | + | chr1_2:60379646-60379665 | None:intergenic | 20.0% |
| !! | ACTAAAAATAAAGTGTGATT+TGG | + | chr1_2:60379647-60379666 | None:intergenic | 20.0% |
| !!! | ACTAGTTATTATCTTTAAGA+TGG | - | chr1_2:60379707-60379726 | Msa0081710:intron | 20.0% |
| !!! | CTAGTTATTATCTTTAAGAT+GGG | - | chr1_2:60379708-60379727 | Msa0081710:intron | 20.0% |
| !!! | TGGTATAGTTATTTTAGTTT+TGG | - | chr1_2:60380305-60380324 | Msa0081710:intron | 20.0% |
| !! | GTTATAGTAGTTAAATATTG+TGG | - | chr1_2:60380327-60380346 | Msa0081710:intron | 20.0% |
| !!! | TTAAATATTGTGGATTAATG+TGG | - | chr1_2:60380337-60380356 | Msa0081710:intron | 20.0% |
| !!! | TTTAATTTAGTGAAATCAGA+AGG | - | chr1_2:60380534-60380553 | Msa0081710:five_prime_UTR | 20.0% |
| !! | TTAATTTAGTGAAATCAGAA+GGG | - | chr1_2:60380535-60380554 | Msa0081710:five_prime_UTR | 20.0% |
| ! | ATTTGATGAACAAATAACAG+TGG | - | chr1_2:60379800-60379819 | Msa0081710:intron | 25.0% |
| ! | AATTAACCATCAACAAAACT+CGG | + | chr1_2:60379998-60380017 | None:intergenic | 25.0% |
| ! | TTGAGAAAAAACATACTCAT+TGG | - | chr1_2:60380261-60380280 | Msa0081710:intron | 25.0% |
| ! | AGACATTATGTTAATGAGTA+TGG | - | chr1_2:60380375-60380394 | Msa0081710:intron | 25.0% |
| ! | TTTAATTGCATGTGTATCTT+AGG | - | chr1_2:60380404-60380423 | Msa0081710:intron | 25.0% |
| ! | ATTTGATGAACAAATAACAG+TGG | - | chr1_2:60379800-60379819 | Msa0081710:intron | 25.0% |
| ! | AATTAACCATCAACAAAACT+CGG | + | chr1_2:60379998-60380017 | None:intergenic | 25.0% |
| ! | TTGAGAAAAAACATACTCAT+TGG | - | chr1_2:60380261-60380280 | Msa0081710:intron | 25.0% |
| ! | AGACATTATGTTAATGAGTA+TGG | - | chr1_2:60380375-60380394 | Msa0081710:intron | 25.0% |
| ! | TTTAATTGCATGTGTATCTT+AGG | - | chr1_2:60380404-60380423 | Msa0081710:intron | 25.0% |
| TGTGAATGTGATTGTGAATT+TGG | + | chr1_2:60379687-60379706 | None:intergenic | 30.0% | |
| GGTAAAGTTGTATTCTTAGA+TGG | - | chr1_2:60379765-60379784 | Msa0081710:intron | 30.0% | |
| !!! | AACTCAACTACTACTTTTTG+TGG | + | chr1_2:60379846-60379865 | None:intergenic | 30.0% |
| GTTCTTATAAGTTTCTTCCT+TGG | - | chr1_2:60380045-60380064 | Msa0081710:CDS | 30.0% | |
| TGACATAAACTACTAAACCA+AGG | + | chr1_2:60380065-60380084 | None:intergenic | 30.0% | |
| ATGTCATAACAGTGAAATAG+TGG | - | chr1_2:60380079-60380098 | Msa0081710:intron | 30.0% | |
| ATCTGCCTATTCAAATAATC+TGG | + | chr1_2:60380191-60380210 | None:intergenic | 30.0% | |
| TATTTGAATAGGCAGATTTC+AGG | - | chr1_2:60380194-60380213 | Msa0081710:intron | 30.0% | |
| ATTTGAATAGGCAGATTTCA+GGG | - | chr1_2:60380195-60380214 | Msa0081710:intron | 30.0% | |
| !! | TGTTTCTCAAGAGTTTTTAG+TGG | - | chr1_2:60380285-60380304 | Msa0081710:intron | 30.0% |
| ACAAAGAACAAACTGAAGAA+AGG | + | chr1_2:60380509-60380528 | None:intergenic | 30.0% | |
| !! | GGGATTAGAACATTGATTTA+TGG | - | chr1_2:60380555-60380574 | Msa0081710:five_prime_UTR | 30.0% |
| TGTGAATGTGATTGTGAATT+TGG | + | chr1_2:60379687-60379706 | None:intergenic | 30.0% | |
| GGTAAAGTTGTATTCTTAGA+TGG | - | chr1_2:60379765-60379784 | Msa0081710:intron | 30.0% | |
| !!! | AACTCAACTACTACTTTTTG+TGG | + | chr1_2:60379846-60379865 | None:intergenic | 30.0% |
| GTTCTTATAAGTTTCTTCCT+TGG | - | chr1_2:60380045-60380064 | Msa0081710:CDS | 30.0% | |
| TGACATAAACTACTAAACCA+AGG | + | chr1_2:60380065-60380084 | None:intergenic | 30.0% | |
| ATGTCATAACAGTGAAATAG+TGG | - | chr1_2:60380079-60380098 | Msa0081710:intron | 30.0% | |
| ATCTGCCTATTCAAATAATC+TGG | + | chr1_2:60380191-60380210 | None:intergenic | 30.0% | |
| TATTTGAATAGGCAGATTTC+AGG | - | chr1_2:60380194-60380213 | Msa0081710:intron | 30.0% | |
| ATTTGAATAGGCAGATTTCA+GGG | - | chr1_2:60380195-60380214 | Msa0081710:intron | 30.0% | |
| !! | TGTTTCTCAAGAGTTTTTAG+TGG | - | chr1_2:60380285-60380304 | Msa0081710:intron | 30.0% |
| ACAAAGAACAAACTGAAGAA+AGG | + | chr1_2:60380509-60380528 | None:intergenic | 30.0% | |
| !! | GGGATTAGAACATTGATTTA+TGG | - | chr1_2:60380555-60380574 | Msa0081710:five_prime_UTR | 30.0% |
| !! | ATTTGGGTTGCGTTATATTG+GGG | + | chr1_2:60379630-60379649 | None:intergenic | 35.0% |
| !! | GATTTGGGTTGCGTTATATT+GGG | + | chr1_2:60379631-60379650 | None:intergenic | 35.0% |
| !! | TGATTTGGGTTGCGTTATAT+TGG | + | chr1_2:60379632-60379651 | None:intergenic | 35.0% |
| ACTTTACCTGTTGAATCTGA+AGG | + | chr1_2:60379753-60379772 | None:intergenic | 35.0% | |
| ATTCAGCTGTGAACCAAAAA+AGG | - | chr1_2:60379868-60379887 | Msa0081710:intron | 35.0% | |
| !! | CAATTTTTCGGAGAATTTGC+CGG | - | chr1_2:60380148-60380167 | Msa0081710:intron | 35.0% |
| TCCTTAATAGTATCCAAGCT+AGG | + | chr1_2:60380233-60380252 | None:intergenic | 35.0% | |
| !! | GAAGTTGGTATATGCAGAAA+AGG | + | chr1_2:60380448-60380467 | None:intergenic | 35.0% |
| !! | ATTTGGGTTGCGTTATATTG+GGG | + | chr1_2:60379630-60379649 | None:intergenic | 35.0% |
| !! | GATTTGGGTTGCGTTATATT+GGG | + | chr1_2:60379631-60379650 | None:intergenic | 35.0% |
| !! | TGATTTGGGTTGCGTTATAT+TGG | + | chr1_2:60379632-60379651 | None:intergenic | 35.0% |
| ACTTTACCTGTTGAATCTGA+AGG | + | chr1_2:60379753-60379772 | None:intergenic | 35.0% | |
| ATTCAGCTGTGAACCAAAAA+AGG | - | chr1_2:60379868-60379887 | Msa0081710:intron | 35.0% | |
| !! | CAATTTTTCGGAGAATTTGC+CGG | - | chr1_2:60380148-60380167 | Msa0081710:intron | 35.0% |
| TCCTTAATAGTATCCAAGCT+AGG | + | chr1_2:60380233-60380252 | None:intergenic | 35.0% | |
| !! | GAAGTTGGTATATGCAGAAA+AGG | + | chr1_2:60380448-60380467 | None:intergenic | 35.0% |
| TTTCGTCCTTCAGATTCAAC+AGG | - | chr1_2:60379744-60379763 | Msa0081710:intron | 40.0% | |
| !!! | GTAATGGTGTTGGCCTTTTT+TGG | + | chr1_2:60379884-60379903 | None:intergenic | 40.0% |
| ! | GGGAGAGAGACACAATTTTT+CGG | - | chr1_2:60380136-60380155 | Msa0081710:intron | 40.0% |
| AATTTGCCGGACATATTGGA+AGG | - | chr1_2:60380161-60380180 | Msa0081710:intron | 40.0% | |
| ATTTGCCGGACATATTGGAA+GGG | - | chr1_2:60380162-60380181 | Msa0081710:intron | 40.0% | |
| GGAGGCCAGATTATTTGAAT+AGG | - | chr1_2:60380183-60380202 | Msa0081710:intron | 40.0% | |
| AATAGGCAGATTTCAGGGAA+AGG | - | chr1_2:60380200-60380219 | Msa0081710:intron | 40.0% | |
| ATAGGCAGATTTCAGGGAAA+GGG | - | chr1_2:60380201-60380220 | Msa0081710:intron | 40.0% | |
| GCCTAGCTTGGATACTATTA+AGG | - | chr1_2:60380229-60380248 | Msa0081710:intron | 40.0% | |
| TTGAGCAGCATTACAGAAGT+TGG | + | chr1_2:60380463-60380482 | None:intergenic | 40.0% | |
| TTTCGTCCTTCAGATTCAAC+AGG | - | chr1_2:60379744-60379763 | Msa0081710:intron | 40.0% | |
| !!! | GTAATGGTGTTGGCCTTTTT+TGG | + | chr1_2:60379884-60379903 | None:intergenic | 40.0% |
| ! | GGGAGAGAGACACAATTTTT+CGG | - | chr1_2:60380136-60380155 | Msa0081710:intron | 40.0% |
| AATTTGCCGGACATATTGGA+AGG | - | chr1_2:60380161-60380180 | Msa0081710:intron | 40.0% | |
| ATTTGCCGGACATATTGGAA+GGG | - | chr1_2:60380162-60380181 | Msa0081710:intron | 40.0% | |
| GGAGGCCAGATTATTTGAAT+AGG | - | chr1_2:60380183-60380202 | Msa0081710:intron | 40.0% | |
| AATAGGCAGATTTCAGGGAA+AGG | - | chr1_2:60380200-60380219 | Msa0081710:intron | 40.0% | |
| ATAGGCAGATTTCAGGGAAA+GGG | - | chr1_2:60380201-60380220 | Msa0081710:intron | 40.0% | |
| GCCTAGCTTGGATACTATTA+AGG | - | chr1_2:60380229-60380248 | Msa0081710:intron | 40.0% | |
| TTGAGCAGCATTACAGAAGT+TGG | + | chr1_2:60380463-60380482 | None:intergenic | 40.0% | |
| GGTTGCGTTATATTGGGGTT+GGG | + | chr1_2:60379625-60379644 | None:intergenic | 45.0% | |
| AACAGTGGCAGAGCTAATGA+TGG | - | chr1_2:60379815-60379834 | Msa0081710:intron | 45.0% | |
| ! | TTGTCAGCAGGTAATGGTGT+TGG | + | chr1_2:60379894-60379913 | None:intergenic | 45.0% |
| AGCTTCTTGTCAGCAGGTAA+TGG | + | chr1_2:60379900-60379919 | None:intergenic | 45.0% | |
| ! | ATCTCTAGCTTCTTGTCAGC+AGG | + | chr1_2:60379906-60379925 | None:intergenic | 45.0% |
| TTGATGCTTCCAGTGAAGCA+AGG | - | chr1_2:60379939-60379958 | Msa0081710:CDS | 45.0% | |
| TGATGCTTCCAGTGAAGCAA+GGG | - | chr1_2:60379940-60379959 | Msa0081710:CDS | 45.0% | |
| !! | GGGAAGCCTATTGGTTTAAG+CGG | - | chr1_2:60379960-60379979 | Msa0081710:CDS | 45.0% |
| TCTTCGCCGCTTAAACCAAT+AGG | + | chr1_2:60379969-60379988 | None:intergenic | 45.0% | |
| !!! | AACTCGCCGAGTTTTGTTGA+TGG | - | chr1_2:60379989-60380008 | Msa0081710:CDS | 45.0% |
| ! | ACAGTGAAATAGTGGAGCCT+CGG | - | chr1_2:60380087-60380106 | Msa0081710:intron | 45.0% |
| GGAGAATTTGCCGGACATAT+TGG | - | chr1_2:60380157-60380176 | Msa0081710:intron | 45.0% | |
| GGTTGCGTTATATTGGGGTT+GGG | + | chr1_2:60379625-60379644 | None:intergenic | 45.0% | |
| AACAGTGGCAGAGCTAATGA+TGG | - | chr1_2:60379815-60379834 | Msa0081710:intron | 45.0% | |
| ! | TTGTCAGCAGGTAATGGTGT+TGG | + | chr1_2:60379894-60379913 | None:intergenic | 45.0% |
| AGCTTCTTGTCAGCAGGTAA+TGG | + | chr1_2:60379900-60379919 | None:intergenic | 45.0% | |
| ! | ATCTCTAGCTTCTTGTCAGC+AGG | + | chr1_2:60379906-60379925 | None:intergenic | 45.0% |
| TTGATGCTTCCAGTGAAGCA+AGG | - | chr1_2:60379939-60379958 | Msa0081710:CDS | 45.0% | |
| TGATGCTTCCAGTGAAGCAA+GGG | - | chr1_2:60379940-60379959 | Msa0081710:CDS | 45.0% | |
| !! | GGGAAGCCTATTGGTTTAAG+CGG | - | chr1_2:60379960-60379979 | Msa0081710:CDS | 45.0% |
| TCTTCGCCGCTTAAACCAAT+AGG | + | chr1_2:60379969-60379988 | None:intergenic | 45.0% | |
| !!! | AACTCGCCGAGTTTTGTTGA+TGG | - | chr1_2:60379989-60380008 | Msa0081710:CDS | 45.0% |
| ! | ACAGTGAAATAGTGGAGCCT+CGG | - | chr1_2:60380087-60380106 | Msa0081710:intron | 45.0% |
| GGAGAATTTGCCGGACATAT+TGG | - | chr1_2:60380157-60380176 | Msa0081710:intron | 45.0% | |
| GGGTTGCGTTATATTGGGGT+TGG | + | chr1_2:60379626-60379645 | None:intergenic | 50.0% | |
| ATAGGCTTCCCTTGCTTCAC+TGG | + | chr1_2:60379951-60379970 | None:intergenic | 50.0% | |
| GTGAAGCAAGGGAAGCCTAT+TGG | - | chr1_2:60379951-60379970 | Msa0081710:CDS | 50.0% | |
| !! | GAAGAGGTGATGGAGGAGAA+GGG | - | chr1_2:60380116-60380135 | Msa0081710:intron | 50.0% |
| GGGTTGCGTTATATTGGGGT+TGG | + | chr1_2:60379626-60379645 | None:intergenic | 50.0% | |
| ATAGGCTTCCCTTGCTTCAC+TGG | + | chr1_2:60379951-60379970 | None:intergenic | 50.0% | |
| GTGAAGCAAGGGAAGCCTAT+TGG | - | chr1_2:60379951-60379970 | Msa0081710:CDS | 50.0% | |
| !! | GAAGAGGTGATGGAGGAGAA+GGG | - | chr1_2:60380116-60380135 | Msa0081710:intron | 50.0% |
| ! | GTGAAATAGTGGAGCCTCGG+AGG | - | chr1_2:60380090-60380109 | Msa0081710:intron | 55.0% |
| ! | AATAGTGGAGCCTCGGAGGA+AGG | - | chr1_2:60380094-60380113 | Msa0081710:intron | 55.0% |
| ATCACCTCTTCCTTCCTCCG+AGG | + | chr1_2:60380107-60380126 | None:intergenic | 55.0% | |
| TCGGAGGAAGGAAGAGGTGA+TGG | - | chr1_2:60380106-60380125 | Msa0081710:intron | 55.0% | |
| ! | GAGGAAGGAAGAGGTGATGG+AGG | - | chr1_2:60380109-60380128 | Msa0081710:intron | 55.0% |
| !! | GGAAGAGGTGATGGAGGAGA+AGG | - | chr1_2:60380115-60380134 | Msa0081710:intron | 55.0% |
| TGCCGGACATATTGGAAGGG+AGG | - | chr1_2:60380165-60380184 | Msa0081710:intron | 55.0% | |
| GGCCTCCCTTCCAATATGTC+CGG | + | chr1_2:60380170-60380189 | None:intergenic | 55.0% | |
| GGCAGATTTCAGGGAAAGGG+TGG | - | chr1_2:60380204-60380223 | Msa0081710:intron | 55.0% | |
| GAAAGGGTGGAAGCCTAGCT+TGG | - | chr1_2:60380217-60380236 | Msa0081710:intron | 55.0% | |
| ! | GTGAAATAGTGGAGCCTCGG+AGG | - | chr1_2:60380090-60380109 | Msa0081710:intron | 55.0% |
| ! | AATAGTGGAGCCTCGGAGGA+AGG | - | chr1_2:60380094-60380113 | Msa0081710:intron | 55.0% |
| ATCACCTCTTCCTTCCTCCG+AGG | + | chr1_2:60380107-60380126 | None:intergenic | 55.0% | |
| TCGGAGGAAGGAAGAGGTGA+TGG | - | chr1_2:60380106-60380125 | Msa0081710:intron | 55.0% | |
| ! | GAGGAAGGAAGAGGTGATGG+AGG | - | chr1_2:60380109-60380128 | Msa0081710:intron | 55.0% |
| !! | GGAAGAGGTGATGGAGGAGA+AGG | - | chr1_2:60380115-60380134 | Msa0081710:intron | 55.0% |
| TGCCGGACATATTGGAAGGG+AGG | - | chr1_2:60380165-60380184 | Msa0081710:intron | 55.0% | |
| GGCCTCCCTTCCAATATGTC+CGG | + | chr1_2:60380170-60380189 | None:intergenic | 55.0% | |
| GGCAGATTTCAGGGAAAGGG+TGG | - | chr1_2:60380204-60380223 | Msa0081710:intron | 55.0% | |
| GAAAGGGTGGAAGCCTAGCT+TGG | - | chr1_2:60380217-60380236 | Msa0081710:intron | 55.0% | |
| GGAGCCTCGGAGGAAGGAAG+AGG | - | chr1_2:60380100-60380119 | Msa0081710:intron | 65.0% | |
| GGAGCCTCGGAGGAAGGAAG+AGG | - | chr1_2:60380100-60380119 | Msa0081710:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 60379584 | 60380599 | 60379584 | ID=Msa0081710;Name=Msa0081710 |
| chr1_2 | mRNA | 60379584 | 60380599 | 60379584 | ID=Msa0081710-mRNA-1;Parent=Msa0081710;Name=Msa0081710-mRNA-1;_AED=0.31;_eAED=0.37;_QI=142|0|0.33|1|0|0|3|0|98 |
| chr1_2 | exon | 60379584 | 60379639 | 60379584 | ID=Msa0081710-mRNA-1:exon:19673;Parent=Msa0081710-mRNA-1 |
| chr1_2 | exon | 60379887 | 60380084 | 60379887 | ID=Msa0081710-mRNA-1:exon:19672;Parent=Msa0081710-mRNA-1 |
| chr1_2 | exon | 60380418 | 60380599 | 60380418 | ID=Msa0081710-mRNA-1:exon:19671;Parent=Msa0081710-mRNA-1 |
| chr1_2 | five_prime_UTR | 60380458 | 60380599 | 60380458 | ID=Msa0081710-mRNA-1:five_prime_utr;Parent=Msa0081710-mRNA-1 |
| chr1_2 | CDS | 60380418 | 60380457 | 60380418 | ID=Msa0081710-mRNA-1:cds;Parent=Msa0081710-mRNA-1 |
| chr1_2 | CDS | 60379887 | 60380084 | 60379887 | ID=Msa0081710-mRNA-1:cds;Parent=Msa0081710-mRNA-1 |
| chr1_2 | CDS | 60379584 | 60379639 | 60379584 | ID=Msa0081710-mRNA-1:cds;Parent=Msa0081710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
