Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128220 | XP_003591419.1 | 95.455 | 66 | 3 | 0 | 14 | 79 | 125 | 190 | 4.69e-38 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128220 | G7IDR9 | 95.455 | 66 | 3 | 0 | 14 | 79 | 125 | 190 | 2.24e-38 | 136 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028170 | Msa0128220 | 0.971016 | 1.667164e-132 | -8.615850e-47 |
| Msa0081710 | Msa0128220 | 0.881933 | 1.589638e-70 | -8.615850e-47 |
| Msa0128220 | Msa0174320 | 0.953278 | 3.897495e-111 | -8.615850e-47 |
| Msa0128220 | Msa0252540 | 0.804170 | 2.455921e-49 | -8.615850e-47 |
| Msa0128220 | Msa0329400 | 0.807507 | 4.886835e-50 | -8.615850e-47 |
| Msa0128220 | Msa0358890 | 0.804705 | 1.900029e-49 | -8.615850e-47 |
| Msa0128220 | Msa0479170 | 0.803861 | 2.847448e-49 | -8.615850e-47 |
| Msa0128220 | Msa0566310 | 0.803965 | 2.709372e-49 | -8.615850e-47 |
| Msa0128220 | Msa0574390 | 0.803848 | 2.865623e-49 | -8.615850e-47 |
| Msa0128220 | Msa0615420 | 0.813868 | 2.058233e-51 | -8.615850e-47 |
| Msa0128220 | Msa0662340 | 0.805113 | 1.561512e-49 | -8.615850e-47 |
| Msa0128220 | Msa0698640 | 0.807272 | 5.480157e-50 | -8.615850e-47 |
| Msa0128220 | Msa1024740 | 0.823633 | 1.247050e-53 | -8.615850e-47 |
| Msa0128220 | Msa1035960 | 0.804662 | 1.939791e-49 | -8.615850e-47 |
| Msa0128220 | Msa1113800 | 0.803559 | 3.290510e-49 | -8.615850e-47 |
| Msa0128220 | Msa1152510 | 0.805402 | 1.358177e-49 | -8.615850e-47 |
| Msa0128220 | Msa1221050 | 0.812365 | 4.396986e-51 | -8.615850e-47 |
| Msa0128220 | Msa1340710 | 0.810835 | 9.460473e-51 | -8.615850e-47 |
| Msa0128220 | Msa1353470 | 0.804442 | 2.156150e-49 | -8.615850e-47 |
| Msa0128220 | Msa1353980 | 0.800124 | 1.669420e-48 | -8.615850e-47 |
| Msa0128220 | Msa1463900 | 0.804186 | 2.437917e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128220 | MtrunA17_Chr1g0194831 | 95.455 | 66 | 3 | 0 | 14 | 79 | 110 | 175 | 5.34e-42 | 135 |
| Msa0128220 | MtrunA17_Chr7g0269881 | 62.264 | 53 | 18 | 1 | 28 | 78 | 137 | 189 | 1.02e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAATGTGATTGTGAATT+TGG | 0.224168 | 1_3:-57891041 | None:intergenic |
| GGGATTAGAACATTGATTTA+TGG | 0.229629 | 1_3:+57891921 | Msa0128220:CDS |
| TATTTGAATAGGCAGATTTC+AGG | 0.248523 | 1_3:+57891560 | Msa0128220:CDS |
| TGATTTGGGTTGCGTTATAT+TGG | 0.301838 | 1_3:-57890986 | None:intergenic |
| GATTTGGGTTGCGTTATATT+GGG | 0.309638 | 1_3:-57890985 | None:intergenic |
| GCCTAGCTTGGATACTATTA+AGG | 0.311308 | 1_3:+57891595 | Msa0128220:CDS |
| ATCTGCCTATTCAAATAATC+TGG | 0.371640 | 1_3:-57891554 | None:intergenic |
| GGAAGAGGTGATGGAGGAGA+AGG | 0.379095 | 1_3:+57891481 | Msa0128220:CDS |
| GGAGAATTTGCCGGACATAT+TGG | 0.397303 | 1_3:+57891523 | Msa0128220:CDS |
| GGTTGCGTTATATTGGGGTT+GGG | 0.407877 | 1_3:-57890979 | None:intergenic |
| ACTAGTTATTATCTTTAAGA+TGG | 0.414570 | 1_3:+57891073 | Msa0128220:exon |
| TTTCGTCCTTCAGATTCAAC+AGG | 0.424376 | 1_3:+57891110 | Msa0128220:CDS |
| GGAGGCCAGATTATTTGAAT+AGG | 0.439315 | 1_3:+57891549 | Msa0128220:CDS |
| GGGTTGCGTTATATTGGGGT+TGG | 0.450106 | 1_3:-57890980 | None:intergenic |
| CTAGTTATTATCTTTAAGAT+GGG | 0.465652 | 1_3:+57891074 | Msa0128220:exon |
| GAAGAGGTGATGGAGGAGAA+GGG | 0.490391 | 1_3:+57891482 | Msa0128220:CDS |
| TTTAATTTAGTGAAATCAGA+AGG | 0.505259 | 1_3:+57891900 | Msa0128220:intron |
| GAAAGGGTGGAAGCCTAGCT+TGG | 0.506451 | 1_3:+57891583 | Msa0128220:CDS |
| TCGGAGGAAGGAAGAGGTGA+TGG | 0.513945 | 1_3:+57891472 | Msa0128220:CDS |
| ATTTGAATAGGCAGATTTCA+GGG | 0.521145 | 1_3:+57891561 | Msa0128220:CDS |
| AATAGGCAGATTTCAGGGAA+AGG | 0.530769 | 1_3:+57891566 | Msa0128220:CDS |
| GGCCTCCCTTCCAATATGTC+CGG | 0.533242 | 1_3:-57891533 | None:intergenic |
| ATAGGCAGATTTCAGGGAAA+GGG | 0.549284 | 1_3:+57891567 | Msa0128220:CDS |
| GGAGCCTCGGAGGAAGGAAG+AGG | 0.553960 | 1_3:+57891466 | Msa0128220:CDS |
| ACTTTACCTGTTGAATCTGA+AGG | 0.560942 | 1_3:-57891116 | None:intergenic |
| AATTTGCCGGACATATTGGA+AGG | 0.563693 | 1_3:+57891527 | Msa0128220:CDS |
| ATTTGGGTTGCGTTATATTG+GGG | 0.567607 | 1_3:-57890984 | None:intergenic |
| TCCTTAATAGTATCCAAGCT+AGG | 0.569966 | 1_3:-57891596 | None:intergenic |
| AATAGTGGAGCCTCGGAGGA+AGG | 0.571841 | 1_3:+57891460 | Msa0128220:intron |
| ACAGTGAAATAGTGGAGCCT+CGG | 0.582711 | 1_3:+57891453 | Msa0128220:intron |
| GAGGAAGGAAGAGGTGATGG+AGG | 0.589938 | 1_3:+57891475 | Msa0128220:CDS |
| GGCAGATTTCAGGGAAAGGG+TGG | 0.595138 | 1_3:+57891570 | Msa0128220:CDS |
| TTAATTTAGTGAAATCAGAA+GGG | 0.607405 | 1_3:+57891901 | Msa0128220:intron |
| TGCCGGACATATTGGAAGGG+AGG | 0.607569 | 1_3:+57891531 | Msa0128220:CDS |
| GTGAAATAGTGGAGCCTCGG+AGG | 0.619098 | 1_3:+57891456 | Msa0128220:intron |
| ACGTGCATACTTGGGATGCA+TGG | 0.625338 | 1_3:-57891953 | None:intergenic |
| ATTTGCCGGACATATTGGAA+GGG | 0.657578 | 1_3:+57891528 | Msa0128220:CDS |
| ATCACCTCTTCCTTCCTCCG+AGG | 0.665878 | 1_3:-57891470 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAAATAAAGTGTGATTT+GGG | - | chr1_3:57891003-57891022 | None:intergenic | 20.0% |
| !! | ACTAAAAATAAAGTGTGATT+TGG | - | chr1_3:57891004-57891023 | None:intergenic | 20.0% |
| !!! | ACTAGTTATTATCTTTAAGA+TGG | + | chr1_3:57891073-57891092 | Msa0128220:exon | 20.0% |
| !!! | CTAGTTATTATCTTTAAGAT+GGG | + | chr1_3:57891074-57891093 | Msa0128220:exon | 20.0% |
| !!! | TGGTATAGTTATTTTAGTTT+TGG | + | chr1_3:57891671-57891690 | Msa0128220:intron | 20.0% |
| !! | GTTATAGTAGTTAAATATTG+TGG | + | chr1_3:57891693-57891712 | Msa0128220:intron | 20.0% |
| !!! | TTAAATATTGTGGATTAATG+TGG | + | chr1_3:57891703-57891722 | Msa0128220:intron | 20.0% |
| !!! | TTTAATTTAGTGAAATCAGA+AGG | + | chr1_3:57891900-57891919 | Msa0128220:intron | 20.0% |
| !! | TTAATTTAGTGAAATCAGAA+GGG | + | chr1_3:57891901-57891920 | Msa0128220:intron | 20.0% |
| !! | CTAAAAATAAAGTGTGATTT+GGG | - | chr1_3:57891003-57891022 | None:intergenic | 20.0% |
| !! | ACTAAAAATAAAGTGTGATT+TGG | - | chr1_3:57891004-57891023 | None:intergenic | 20.0% |
| !!! | ACTAGTTATTATCTTTAAGA+TGG | + | chr1_3:57891073-57891092 | Msa0128220:exon | 20.0% |
| !!! | CTAGTTATTATCTTTAAGAT+GGG | + | chr1_3:57891074-57891093 | Msa0128220:exon | 20.0% |
| !!! | TGGTATAGTTATTTTAGTTT+TGG | + | chr1_3:57891671-57891690 | Msa0128220:intron | 20.0% |
| !! | GTTATAGTAGTTAAATATTG+TGG | + | chr1_3:57891693-57891712 | Msa0128220:intron | 20.0% |
| !!! | TTAAATATTGTGGATTAATG+TGG | + | chr1_3:57891703-57891722 | Msa0128220:intron | 20.0% |
| !!! | TTTAATTTAGTGAAATCAGA+AGG | + | chr1_3:57891900-57891919 | Msa0128220:intron | 20.0% |
| !! | TTAATTTAGTGAAATCAGAA+GGG | + | chr1_3:57891901-57891920 | Msa0128220:intron | 20.0% |
| ! | AATTAACCATCAACAAAACT+CGG | - | chr1_3:57891364-57891383 | None:intergenic | 25.0% |
| ! | TGACATAAATTACTAAACCA+AGG | - | chr1_3:57891431-57891450 | None:intergenic | 25.0% |
| ! | TTGAGAAAAAACATACTCAT+TGG | + | chr1_3:57891627-57891646 | Msa0128220:CDS | 25.0% |
| ! | AGACATTATGTTAATGAGTA+TGG | + | chr1_3:57891741-57891760 | Msa0128220:intron | 25.0% |
| ! | TTTAATTGCATGTGTATCTT+AGG | + | chr1_3:57891770-57891789 | Msa0128220:intron | 25.0% |
| ! | AATTAACCATCAACAAAACT+CGG | - | chr1_3:57891364-57891383 | None:intergenic | 25.0% |
| ! | TGACATAAATTACTAAACCA+AGG | - | chr1_3:57891431-57891450 | None:intergenic | 25.0% |
| ! | TTGAGAAAAAACATACTCAT+TGG | + | chr1_3:57891627-57891646 | Msa0128220:CDS | 25.0% |
| ! | AGACATTATGTTAATGAGTA+TGG | + | chr1_3:57891741-57891760 | Msa0128220:intron | 25.0% |
| ! | TTTAATTGCATGTGTATCTT+AGG | + | chr1_3:57891770-57891789 | Msa0128220:intron | 25.0% |
| GATGAATGTGATTGTGAATT+TGG | - | chr1_3:57891044-57891063 | None:intergenic | 30.0% | |
| ! | GGTAAAGTAGTTTTCTTAGA+TGG | + | chr1_3:57891131-57891150 | Msa0128220:intron | 30.0% |
| ATTTGATGAAGCAATAACAG+TGG | + | chr1_3:57891166-57891185 | Msa0128220:intron | 30.0% | |
| GTTCTTATAAGTTTCTTCCT+TGG | + | chr1_3:57891411-57891430 | Msa0128220:intron | 30.0% | |
| ATGTCATAACAGTGAAATAG+TGG | + | chr1_3:57891445-57891464 | Msa0128220:intron | 30.0% | |
| ATCTGCCTATTCAAATAATC+TGG | - | chr1_3:57891557-57891576 | None:intergenic | 30.0% | |
| TATTTGAATAGGCAGATTTC+AGG | + | chr1_3:57891560-57891579 | Msa0128220:CDS | 30.0% | |
| ATTTGAATAGGCAGATTTCA+GGG | + | chr1_3:57891561-57891580 | Msa0128220:CDS | 30.0% | |
| !! | TGTTTCTCAAGAGTTTTTAG+TGG | + | chr1_3:57891651-57891670 | Msa0128220:intron | 30.0% |
| ACAAAGAACAAACTGAAGAA+AGG | - | chr1_3:57891875-57891894 | None:intergenic | 30.0% | |
| !! | GGGATTAGAACATTGATTTA+TGG | + | chr1_3:57891921-57891940 | Msa0128220:CDS | 30.0% |
| GATGAATGTGATTGTGAATT+TGG | - | chr1_3:57891044-57891063 | None:intergenic | 30.0% | |
| ! | GGTAAAGTAGTTTTCTTAGA+TGG | + | chr1_3:57891131-57891150 | Msa0128220:intron | 30.0% |
| ATTTGATGAAGCAATAACAG+TGG | + | chr1_3:57891166-57891185 | Msa0128220:intron | 30.0% | |
| GTTCTTATAAGTTTCTTCCT+TGG | + | chr1_3:57891411-57891430 | Msa0128220:intron | 30.0% | |
| ATGTCATAACAGTGAAATAG+TGG | + | chr1_3:57891445-57891464 | Msa0128220:intron | 30.0% | |
| ATCTGCCTATTCAAATAATC+TGG | - | chr1_3:57891557-57891576 | None:intergenic | 30.0% | |
| TATTTGAATAGGCAGATTTC+AGG | + | chr1_3:57891560-57891579 | Msa0128220:CDS | 30.0% | |
| ATTTGAATAGGCAGATTTCA+GGG | + | chr1_3:57891561-57891580 | Msa0128220:CDS | 30.0% | |
| !! | TGTTTCTCAAGAGTTTTTAG+TGG | + | chr1_3:57891651-57891670 | Msa0128220:intron | 30.0% |
| ACAAAGAACAAACTGAAGAA+AGG | - | chr1_3:57891875-57891894 | None:intergenic | 30.0% | |
| !! | GGGATTAGAACATTGATTTA+TGG | + | chr1_3:57891921-57891940 | Msa0128220:CDS | 30.0% |
| !! | ATTTGGGTTGCGTTATATTG+GGG | - | chr1_3:57890987-57891006 | None:intergenic | 35.0% |
| !! | GATTTGGGTTGCGTTATATT+GGG | - | chr1_3:57890988-57891007 | None:intergenic | 35.0% |
| !! | TGATTTGGGTTGCGTTATAT+TGG | - | chr1_3:57890989-57891008 | None:intergenic | 35.0% |
| ACTTTACCTGTTGAATCTGA+AGG | - | chr1_3:57891119-57891138 | None:intergenic | 35.0% | |
| !!! | AACTCAACCACTACTTTTTG+TGG | - | chr1_3:57891212-57891231 | None:intergenic | 35.0% |
| ATTCAGCTGTGAACCAAAAA+AGG | + | chr1_3:57891234-57891253 | Msa0128220:intron | 35.0% | |
| TCCTTAATAGTATCCAAGCT+AGG | - | chr1_3:57891599-57891618 | None:intergenic | 35.0% | |
| !! | GAAGTTGGTATATGCAGAAA+AGG | - | chr1_3:57891814-57891833 | None:intergenic | 35.0% |
| !! | ATTTGGGTTGCGTTATATTG+GGG | - | chr1_3:57890987-57891006 | None:intergenic | 35.0% |
| !! | GATTTGGGTTGCGTTATATT+GGG | - | chr1_3:57890988-57891007 | None:intergenic | 35.0% |
| !! | TGATTTGGGTTGCGTTATAT+TGG | - | chr1_3:57890989-57891008 | None:intergenic | 35.0% |
| ACTTTACCTGTTGAATCTGA+AGG | - | chr1_3:57891119-57891138 | None:intergenic | 35.0% | |
| !!! | AACTCAACCACTACTTTTTG+TGG | - | chr1_3:57891212-57891231 | None:intergenic | 35.0% |
| ATTCAGCTGTGAACCAAAAA+AGG | + | chr1_3:57891234-57891253 | Msa0128220:intron | 35.0% | |
| TCCTTAATAGTATCCAAGCT+AGG | - | chr1_3:57891599-57891618 | None:intergenic | 35.0% | |
| !! | GAAGTTGGTATATGCAGAAA+AGG | - | chr1_3:57891814-57891833 | None:intergenic | 35.0% |
| TTTCGTCCTTCAGATTCAAC+AGG | + | chr1_3:57891110-57891129 | Msa0128220:CDS | 40.0% | |
| GGATCATCCACAAAAAGTAG+TGG | + | chr1_3:57891202-57891221 | Msa0128220:intron | 40.0% | |
| !!! | GTAATGGTGTTGGCCTTTTT+TGG | - | chr1_3:57891250-57891269 | None:intergenic | 40.0% |
| !! | CGATTTTTCGGAGAATTTGC+CGG | + | chr1_3:57891514-57891533 | Msa0128220:CDS | 40.0% |
| AATTTGCCGGACATATTGGA+AGG | + | chr1_3:57891527-57891546 | Msa0128220:CDS | 40.0% | |
| ATTTGCCGGACATATTGGAA+GGG | + | chr1_3:57891528-57891547 | Msa0128220:CDS | 40.0% | |
| GGAGGCCAGATTATTTGAAT+AGG | + | chr1_3:57891549-57891568 | Msa0128220:CDS | 40.0% | |
| AATAGGCAGATTTCAGGGAA+AGG | + | chr1_3:57891566-57891585 | Msa0128220:CDS | 40.0% | |
| ATAGGCAGATTTCAGGGAAA+GGG | + | chr1_3:57891567-57891586 | Msa0128220:CDS | 40.0% | |
| GCCTAGCTTGGATACTATTA+AGG | + | chr1_3:57891595-57891614 | Msa0128220:CDS | 40.0% | |
| TTGAGCAGCATTACAGAAGT+TGG | - | chr1_3:57891829-57891848 | None:intergenic | 40.0% | |
| TTTCGTCCTTCAGATTCAAC+AGG | + | chr1_3:57891110-57891129 | Msa0128220:CDS | 40.0% | |
| GGATCATCCACAAAAAGTAG+TGG | + | chr1_3:57891202-57891221 | Msa0128220:intron | 40.0% | |
| !!! | GTAATGGTGTTGGCCTTTTT+TGG | - | chr1_3:57891250-57891269 | None:intergenic | 40.0% |
| !! | CGATTTTTCGGAGAATTTGC+CGG | + | chr1_3:57891514-57891533 | Msa0128220:CDS | 40.0% |
| AATTTGCCGGACATATTGGA+AGG | + | chr1_3:57891527-57891546 | Msa0128220:CDS | 40.0% | |
| ATTTGCCGGACATATTGGAA+GGG | + | chr1_3:57891528-57891547 | Msa0128220:CDS | 40.0% | |
| GGAGGCCAGATTATTTGAAT+AGG | + | chr1_3:57891549-57891568 | Msa0128220:CDS | 40.0% | |
| AATAGGCAGATTTCAGGGAA+AGG | + | chr1_3:57891566-57891585 | Msa0128220:CDS | 40.0% | |
| ATAGGCAGATTTCAGGGAAA+GGG | + | chr1_3:57891567-57891586 | Msa0128220:CDS | 40.0% | |
| GCCTAGCTTGGATACTATTA+AGG | + | chr1_3:57891595-57891614 | Msa0128220:CDS | 40.0% | |
| TTGAGCAGCATTACAGAAGT+TGG | - | chr1_3:57891829-57891848 | None:intergenic | 40.0% | |
| GGTTGCGTTATATTGGGGTT+GGG | - | chr1_3:57890982-57891001 | None:intergenic | 45.0% | |
| AACAGTGGCAGAGCTAATGA+TGG | + | chr1_3:57891181-57891200 | Msa0128220:intron | 45.0% | |
| ! | TTGTCAGCAGGTAATGGTGT+TGG | - | chr1_3:57891260-57891279 | None:intergenic | 45.0% |
| AGCTTCTTGTCAGCAGGTAA+TGG | - | chr1_3:57891266-57891285 | None:intergenic | 45.0% | |
| ! | ATCTCTAGCTTCTTGTCAGC+AGG | - | chr1_3:57891272-57891291 | None:intergenic | 45.0% |
| TTGATGCTTCCAGTGAAGCA+AGG | + | chr1_3:57891305-57891324 | Msa0128220:intron | 45.0% | |
| TGATGCTTCCAGTGAAGCAA+GGG | + | chr1_3:57891306-57891325 | Msa0128220:intron | 45.0% | |
| !! | GGGAAGCCTATTGGTTTAAG+CGG | + | chr1_3:57891326-57891345 | Msa0128220:intron | 45.0% |
| TCTTCGCCGCTTAAACCAAT+AGG | - | chr1_3:57891335-57891354 | None:intergenic | 45.0% | |
| !!! | AACTCGCCGAGTTTTGTTGA+TGG | + | chr1_3:57891355-57891374 | Msa0128220:intron | 45.0% |
| ! | ACAGTGAAATAGTGGAGCCT+CGG | + | chr1_3:57891453-57891472 | Msa0128220:intron | 45.0% |
| ! | GGGAGAGAGACACGATTTTT+CGG | + | chr1_3:57891502-57891521 | Msa0128220:CDS | 45.0% |
| GGAGAATTTGCCGGACATAT+TGG | + | chr1_3:57891523-57891542 | Msa0128220:CDS | 45.0% | |
| GGTTGCGTTATATTGGGGTT+GGG | - | chr1_3:57890982-57891001 | None:intergenic | 45.0% | |
| AACAGTGGCAGAGCTAATGA+TGG | + | chr1_3:57891181-57891200 | Msa0128220:intron | 45.0% | |
| ! | TTGTCAGCAGGTAATGGTGT+TGG | - | chr1_3:57891260-57891279 | None:intergenic | 45.0% |
| AGCTTCTTGTCAGCAGGTAA+TGG | - | chr1_3:57891266-57891285 | None:intergenic | 45.0% | |
| ! | ATCTCTAGCTTCTTGTCAGC+AGG | - | chr1_3:57891272-57891291 | None:intergenic | 45.0% |
| TTGATGCTTCCAGTGAAGCA+AGG | + | chr1_3:57891305-57891324 | Msa0128220:intron | 45.0% | |
| TGATGCTTCCAGTGAAGCAA+GGG | + | chr1_3:57891306-57891325 | Msa0128220:intron | 45.0% | |
| !! | GGGAAGCCTATTGGTTTAAG+CGG | + | chr1_3:57891326-57891345 | Msa0128220:intron | 45.0% |
| TCTTCGCCGCTTAAACCAAT+AGG | - | chr1_3:57891335-57891354 | None:intergenic | 45.0% | |
| !!! | AACTCGCCGAGTTTTGTTGA+TGG | + | chr1_3:57891355-57891374 | Msa0128220:intron | 45.0% |
| ! | ACAGTGAAATAGTGGAGCCT+CGG | + | chr1_3:57891453-57891472 | Msa0128220:intron | 45.0% |
| ! | GGGAGAGAGACACGATTTTT+CGG | + | chr1_3:57891502-57891521 | Msa0128220:CDS | 45.0% |
| GGAGAATTTGCCGGACATAT+TGG | + | chr1_3:57891523-57891542 | Msa0128220:CDS | 45.0% | |
| GGGTTGCGTTATATTGGGGT+TGG | - | chr1_3:57890983-57891002 | None:intergenic | 50.0% | |
| ATAGGCTTCCCTTGCTTCAC+TGG | - | chr1_3:57891317-57891336 | None:intergenic | 50.0% | |
| GTGAAGCAAGGGAAGCCTAT+TGG | + | chr1_3:57891317-57891336 | Msa0128220:intron | 50.0% | |
| !! | GAAGAGGTGATGGAGGAGAA+GGG | + | chr1_3:57891482-57891501 | Msa0128220:CDS | 50.0% |
| GGGTTGCGTTATATTGGGGT+TGG | - | chr1_3:57890983-57891002 | None:intergenic | 50.0% | |
| ATAGGCTTCCCTTGCTTCAC+TGG | - | chr1_3:57891317-57891336 | None:intergenic | 50.0% | |
| GTGAAGCAAGGGAAGCCTAT+TGG | + | chr1_3:57891317-57891336 | Msa0128220:intron | 50.0% | |
| !! | GAAGAGGTGATGGAGGAGAA+GGG | + | chr1_3:57891482-57891501 | Msa0128220:CDS | 50.0% |
| ! | GTGAAATAGTGGAGCCTCGG+AGG | + | chr1_3:57891456-57891475 | Msa0128220:intron | 55.0% |
| ! | AATAGTGGAGCCTCGGAGGA+AGG | + | chr1_3:57891460-57891479 | Msa0128220:intron | 55.0% |
| ATCACCTCTTCCTTCCTCCG+AGG | - | chr1_3:57891473-57891492 | None:intergenic | 55.0% | |
| TCGGAGGAAGGAAGAGGTGA+TGG | + | chr1_3:57891472-57891491 | Msa0128220:CDS | 55.0% | |
| ! | GAGGAAGGAAGAGGTGATGG+AGG | + | chr1_3:57891475-57891494 | Msa0128220:CDS | 55.0% |
| !! | GGAAGAGGTGATGGAGGAGA+AGG | + | chr1_3:57891481-57891500 | Msa0128220:CDS | 55.0% |
| TGCCGGACATATTGGAAGGG+AGG | + | chr1_3:57891531-57891550 | Msa0128220:CDS | 55.0% | |
| GGCCTCCCTTCCAATATGTC+CGG | - | chr1_3:57891536-57891555 | None:intergenic | 55.0% | |
| GGCAGATTTCAGGGAAAGGG+TGG | + | chr1_3:57891570-57891589 | Msa0128220:CDS | 55.0% | |
| GAAAGGGTGGAAGCCTAGCT+TGG | + | chr1_3:57891583-57891602 | Msa0128220:CDS | 55.0% | |
| ! | GTGAAATAGTGGAGCCTCGG+AGG | + | chr1_3:57891456-57891475 | Msa0128220:intron | 55.0% |
| ! | AATAGTGGAGCCTCGGAGGA+AGG | + | chr1_3:57891460-57891479 | Msa0128220:intron | 55.0% |
| ATCACCTCTTCCTTCCTCCG+AGG | - | chr1_3:57891473-57891492 | None:intergenic | 55.0% | |
| TCGGAGGAAGGAAGAGGTGA+TGG | + | chr1_3:57891472-57891491 | Msa0128220:CDS | 55.0% | |
| ! | GAGGAAGGAAGAGGTGATGG+AGG | + | chr1_3:57891475-57891494 | Msa0128220:CDS | 55.0% |
| !! | GGAAGAGGTGATGGAGGAGA+AGG | + | chr1_3:57891481-57891500 | Msa0128220:CDS | 55.0% |
| TGCCGGACATATTGGAAGGG+AGG | + | chr1_3:57891531-57891550 | Msa0128220:CDS | 55.0% | |
| GGCCTCCCTTCCAATATGTC+CGG | - | chr1_3:57891536-57891555 | None:intergenic | 55.0% | |
| GGCAGATTTCAGGGAAAGGG+TGG | + | chr1_3:57891570-57891589 | Msa0128220:CDS | 55.0% | |
| GAAAGGGTGGAAGCCTAGCT+TGG | + | chr1_3:57891583-57891602 | Msa0128220:CDS | 55.0% | |
| GGAGCCTCGGAGGAAGGAAG+AGG | + | chr1_3:57891466-57891485 | Msa0128220:CDS | 65.0% | |
| GGAGCCTCGGAGGAAGGAAG+AGG | + | chr1_3:57891466-57891485 | Msa0128220:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 57890941 | 57891965 | 57890941 | ID=Msa0128220;Name=Msa0128220 |
| chr1_3 | mRNA | 57890941 | 57891965 | 57890941 | ID=Msa0128220-mRNA-1;Parent=Msa0128220;Name=Msa0128220-mRNA-1;_AED=0.31;_eAED=0.37;_QI=151|0|0.33|1|0|0|3|0|98 |
| chr1_3 | exon | 57890941 | 57891131 | 57890941 | ID=Msa0128220-mRNA-1:exon:18577;Parent=Msa0128220-mRNA-1 |
| chr1_3 | exon | 57891465 | 57891662 | 57891465 | ID=Msa0128220-mRNA-1:exon:18578;Parent=Msa0128220-mRNA-1 |
| chr1_3 | exon | 57891910 | 57891965 | 57891910 | ID=Msa0128220-mRNA-1:exon:18579;Parent=Msa0128220-mRNA-1 |
| chr1_3 | five_prime_UTR | 57890941 | 57891091 | 57890941 | ID=Msa0128220-mRNA-1:five_prime_utr;Parent=Msa0128220-mRNA-1 |
| chr1_3 | CDS | 57891092 | 57891131 | 57891092 | ID=Msa0128220-mRNA-1:cds;Parent=Msa0128220-mRNA-1 |
| chr1_3 | CDS | 57891465 | 57891662 | 57891465 | ID=Msa0128220-mRNA-1:cds;Parent=Msa0128220-mRNA-1 |
| chr1_3 | CDS | 57891910 | 57891965 | 57891910 | ID=Msa0128220-mRNA-1:cds;Parent=Msa0128220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
