Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028170 | Msa0081710 | 0.870183 | 1.768822e-66 | -8.615850e-47 |
| Msa0028170 | Msa0128220 | 0.971016 | 1.667164e-132 | -8.615850e-47 |
| Msa0028170 | Msa0174320 | 0.947093 | 1.311817e-105 | -8.615850e-47 |
| Msa0028170 | Msa0243600 | 0.804322 | 2.284005e-49 | -8.615850e-47 |
| Msa0028170 | Msa0252540 | 0.821467 | 3.975003e-53 | -8.615850e-47 |
| Msa0028170 | Msa0291400 | 0.810611 | 1.057678e-50 | -8.615850e-47 |
| Msa0028170 | Msa0329400 | 0.821081 | 4.878993e-53 | -8.615850e-47 |
| Msa0028170 | Msa0484780 | 0.801871 | 7.339757e-49 | -8.615850e-47 |
| Msa0028170 | Msa0574390 | 0.802816 | 4.688161e-49 | -8.615850e-47 |
| Msa0028170 | Msa0608400 | 0.803025 | 4.244721e-49 | -8.615850e-47 |
| Msa0028170 | Msa0615420 | 0.813428 | 2.572136e-51 | -8.615850e-47 |
| Msa0028170 | Msa0698640 | 0.810393 | 1.178583e-50 | -8.615850e-47 |
| Msa0028170 | Msa0839190 | 0.801592 | 8.371527e-49 | -8.615850e-47 |
| Msa0028170 | Msa1024740 | 0.817434 | 3.304431e-52 | -8.615850e-47 |
| Msa0028170 | Msa1108790 | 0.802760 | 4.814418e-49 | -8.615850e-47 |
| Msa0028170 | Msa1113800 | 0.806407 | 8.349257e-50 | -8.615850e-47 |
| Msa0028170 | Msa1152510 | 0.803533 | 3.331113e-49 | -8.615850e-47 |
| Msa0028170 | Msa1221050 | 0.814535 | 1.466440e-51 | -8.615850e-47 |
| Msa0028170 | Msa1340710 | 0.814239 | 1.705146e-51 | -8.615850e-47 |
| Msa0028170 | Msa1353470 | 0.806841 | 6.762842e-50 | -8.615850e-47 |
| Msa0028170 | Msa1410210 | 0.802950 | 4.398140e-49 | -8.615850e-47 |
| Msa0028170 | Msa1463900 | 0.801918 | 7.175789e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028170 | MtrunA17_Chr1g0194831 | 95.455 | 66 | 3 | 0 | 14 | 79 | 110 | 175 | 5.34e-42 | 135 |
| Msa0028170 | MtrunA17_Chr7g0269881 | 62.264 | 53 | 18 | 1 | 28 | 78 | 137 | 189 | 1.02e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAATGTGATTGTGAATT+TGG | 0.224168 | 1_1:+52966046 | None:intergenic |
| GGGATTAGAACATTGATTTA+TGG | 0.229629 | 1_1:-52965166 | Msa0028170:CDS |
| TATTTGAATAGGCAGATTTC+AGG | 0.248523 | 1_1:-52965527 | Msa0028170:CDS |
| TGATTTGGGTTGCGTTATAT+TGG | 0.301838 | 1_1:+52966101 | None:intergenic |
| GATTTGGGTTGCGTTATATT+GGG | 0.309638 | 1_1:+52966102 | None:intergenic |
| GCCTAGCTTGGATACTATTA+AGG | 0.311308 | 1_1:-52965492 | Msa0028170:CDS |
| ATCTGCCTATTCAAATAATC+TGG | 0.371640 | 1_1:+52965533 | None:intergenic |
| GGAAGAGGTGATGGAGGAGA+AGG | 0.379095 | 1_1:-52965606 | Msa0028170:CDS |
| GGAGAATTTGCCGGACATAT+TGG | 0.397303 | 1_1:-52965564 | Msa0028170:CDS |
| GGTTGCGTTATATTGGGGTT+GGG | 0.407877 | 1_1:+52966108 | None:intergenic |
| ACTAGTTATTATCTTTAAGA+TGG | 0.414570 | 1_1:-52966014 | Msa0028170:exon |
| TTTCGTCCTTCAGATTCAAC+AGG | 0.424376 | 1_1:-52965977 | Msa0028170:intron |
| GGAGGCCAGATTATTTGAAT+AGG | 0.439315 | 1_1:-52965538 | Msa0028170:CDS |
| GGGTTGCGTTATATTGGGGT+TGG | 0.450106 | 1_1:+52966107 | None:intergenic |
| CTAGTTATTATCTTTAAGAT+GGG | 0.465652 | 1_1:-52966013 | Msa0028170:exon |
| GAAGAGGTGATGGAGGAGAA+GGG | 0.490391 | 1_1:-52965605 | Msa0028170:CDS |
| TTTAATTTAGTGAAATCAGA+AGG | 0.505259 | 1_1:-52965187 | Msa0028170:intron |
| GAAAGGGTGGAAGCCTAGCT+TGG | 0.506451 | 1_1:-52965504 | Msa0028170:CDS |
| TCGGAGGAAGGAAGAGGTGA+TGG | 0.513945 | 1_1:-52965615 | Msa0028170:CDS |
| ATTTGAATAGGCAGATTTCA+GGG | 0.521145 | 1_1:-52965526 | Msa0028170:CDS |
| AATAGGCAGATTTCAGGGAA+AGG | 0.530769 | 1_1:-52965521 | Msa0028170:CDS |
| GGCCTCCCTTCCAATATGTC+CGG | 0.533242 | 1_1:+52965554 | None:intergenic |
| ATAGGCAGATTTCAGGGAAA+GGG | 0.549284 | 1_1:-52965520 | Msa0028170:CDS |
| GGAGCCTCGGAGGAAGGAAG+AGG | 0.553960 | 1_1:-52965621 | Msa0028170:CDS |
| ACTTTACCTGTTGAATCTGA+AGG | 0.560942 | 1_1:+52965971 | None:intergenic |
| AATTTGCCGGACATATTGGA+AGG | 0.563693 | 1_1:-52965560 | Msa0028170:CDS |
| ATTTGGGTTGCGTTATATTG+GGG | 0.567607 | 1_1:+52966103 | None:intergenic |
| TCCTTAATAGTATCCAAGCT+AGG | 0.569966 | 1_1:+52965491 | None:intergenic |
| AATAGTGGAGCCTCGGAGGA+AGG | 0.571841 | 1_1:-52965627 | Msa0028170:intron |
| ACAGTGAAATAGTGGAGCCT+CGG | 0.582711 | 1_1:-52965634 | Msa0028170:intron |
| GAGGAAGGAAGAGGTGATGG+AGG | 0.589938 | 1_1:-52965612 | Msa0028170:CDS |
| GGCAGATTTCAGGGAAAGGG+TGG | 0.595138 | 1_1:-52965517 | Msa0028170:CDS |
| TTAATTTAGTGAAATCAGAA+GGG | 0.607405 | 1_1:-52965186 | Msa0028170:intron |
| TGCCGGACATATTGGAAGGG+AGG | 0.607569 | 1_1:-52965556 | Msa0028170:CDS |
| GTGAAATAGTGGAGCCTCGG+AGG | 0.619098 | 1_1:-52965631 | Msa0028170:intron |
| ACGTGCATACTTGGGATGCA+TGG | 0.625338 | 1_1:+52965134 | None:intergenic |
| ATTTGCCGGACATATTGGAA+GGG | 0.657578 | 1_1:-52965559 | Msa0028170:CDS |
| ATCACCTCTTCCTTCCTCCG+AGG | 0.665878 | 1_1:+52965617 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAAATAAAGTGTGATTT+GGG | + | chr1_1:52965206-52965225 | None:intergenic | 20.0% |
| !! | ACTAAAAATAAAGTGTGATT+TGG | + | chr1_1:52965207-52965226 | None:intergenic | 20.0% |
| !!! | ACTAGTTATTATCTTTAAGA+TGG | - | chr1_1:52965276-52965295 | Msa0028170:intron | 20.0% |
| !!! | CTAGTTATTATCTTTAAGAT+GGG | - | chr1_1:52965277-52965296 | Msa0028170:intron | 20.0% |
| !!! | TGGTATAGTTATTTTAGTTT+TGG | - | chr1_1:52965874-52965893 | Msa0028170:intron | 20.0% |
| !! | GTTATAGTAGTTAAATATTG+TGG | - | chr1_1:52965896-52965915 | Msa0028170:intron | 20.0% |
| !!! | TTAAATATTGTGGATTAATG+TGG | - | chr1_1:52965906-52965925 | Msa0028170:intron | 20.0% |
| !!! | TTTAATTTAGTGAAATCAGA+AGG | - | chr1_1:52966103-52966122 | Msa0028170:five_prime_UTR | 20.0% |
| !! | TTAATTTAGTGAAATCAGAA+GGG | - | chr1_1:52966104-52966123 | Msa0028170:five_prime_UTR | 20.0% |
| !! | CTAAAAATAAAGTGTGATTT+GGG | + | chr1_1:52965206-52965225 | None:intergenic | 20.0% |
| !! | ACTAAAAATAAAGTGTGATT+TGG | + | chr1_1:52965207-52965226 | None:intergenic | 20.0% |
| !!! | ACTAGTTATTATCTTTAAGA+TGG | - | chr1_1:52965276-52965295 | Msa0028170:intron | 20.0% |
| !!! | CTAGTTATTATCTTTAAGAT+GGG | - | chr1_1:52965277-52965296 | Msa0028170:intron | 20.0% |
| !!! | TGGTATAGTTATTTTAGTTT+TGG | - | chr1_1:52965874-52965893 | Msa0028170:intron | 20.0% |
| !! | GTTATAGTAGTTAAATATTG+TGG | - | chr1_1:52965896-52965915 | Msa0028170:intron | 20.0% |
| !!! | TTAAATATTGTGGATTAATG+TGG | - | chr1_1:52965906-52965925 | Msa0028170:intron | 20.0% |
| !!! | TTTAATTTAGTGAAATCAGA+AGG | - | chr1_1:52966103-52966122 | Msa0028170:five_prime_UTR | 20.0% |
| !! | TTAATTTAGTGAAATCAGAA+GGG | - | chr1_1:52966104-52966123 | Msa0028170:five_prime_UTR | 20.0% |
| ! | AATTAACCATCAACAAAACT+CGG | + | chr1_1:52965567-52965586 | None:intergenic | 25.0% |
| ! | TGACATAAATTACTAAACCA+AGG | + | chr1_1:52965634-52965653 | None:intergenic | 25.0% |
| ! | TTGAGAAAAAACATACTCAT+TGG | - | chr1_1:52965830-52965849 | Msa0028170:intron | 25.0% |
| ! | AGACATTATGTTAATGAGTA+TGG | - | chr1_1:52965944-52965963 | Msa0028170:intron | 25.0% |
| ! | TTTAATTGCATGTGTATCTT+AGG | - | chr1_1:52965973-52965992 | Msa0028170:intron | 25.0% |
| ! | AATTAACCATCAACAAAACT+CGG | + | chr1_1:52965567-52965586 | None:intergenic | 25.0% |
| ! | TGACATAAATTACTAAACCA+AGG | + | chr1_1:52965634-52965653 | None:intergenic | 25.0% |
| ! | TTGAGAAAAAACATACTCAT+TGG | - | chr1_1:52965830-52965849 | Msa0028170:intron | 25.0% |
| ! | AGACATTATGTTAATGAGTA+TGG | - | chr1_1:52965944-52965963 | Msa0028170:intron | 25.0% |
| ! | TTTAATTGCATGTGTATCTT+AGG | - | chr1_1:52965973-52965992 | Msa0028170:intron | 25.0% |
| GATGAATGTGATTGTGAATT+TGG | + | chr1_1:52965247-52965266 | None:intergenic | 30.0% | |
| GGTAAAGTTGTATTCTTAGA+TGG | - | chr1_1:52965334-52965353 | Msa0028170:intron | 30.0% | |
| ATTTGATGAAGCAATAACAG+TGG | - | chr1_1:52965369-52965388 | Msa0028170:intron | 30.0% | |
| !!! | AACTCAACTACTACTTTTTG+TGG | + | chr1_1:52965415-52965434 | None:intergenic | 30.0% |
| GTTCTTATAAGTTTCTTCCT+TGG | - | chr1_1:52965614-52965633 | Msa0028170:CDS | 30.0% | |
| ATGTCATAACAGTGAAATAG+TGG | - | chr1_1:52965648-52965667 | Msa0028170:intron | 30.0% | |
| ATCTGCCTATTCAAATAATC+TGG | + | chr1_1:52965760-52965779 | None:intergenic | 30.0% | |
| TATTTGAATAGGCAGATTTC+AGG | - | chr1_1:52965763-52965782 | Msa0028170:intron | 30.0% | |
| ATTTGAATAGGCAGATTTCA+GGG | - | chr1_1:52965764-52965783 | Msa0028170:intron | 30.0% | |
| !! | TGTTTCTCAAGAGTTTTTAG+TGG | - | chr1_1:52965854-52965873 | Msa0028170:intron | 30.0% |
| ACAAAGAACAAACTGAAGAA+AGG | + | chr1_1:52966078-52966097 | None:intergenic | 30.0% | |
| !! | GGGATTAGAACATTGATTTA+TGG | - | chr1_1:52966124-52966143 | Msa0028170:five_prime_UTR | 30.0% |
| GATGAATGTGATTGTGAATT+TGG | + | chr1_1:52965247-52965266 | None:intergenic | 30.0% | |
| GGTAAAGTTGTATTCTTAGA+TGG | - | chr1_1:52965334-52965353 | Msa0028170:intron | 30.0% | |
| ATTTGATGAAGCAATAACAG+TGG | - | chr1_1:52965369-52965388 | Msa0028170:intron | 30.0% | |
| !!! | AACTCAACTACTACTTTTTG+TGG | + | chr1_1:52965415-52965434 | None:intergenic | 30.0% |
| GTTCTTATAAGTTTCTTCCT+TGG | - | chr1_1:52965614-52965633 | Msa0028170:CDS | 30.0% | |
| ATGTCATAACAGTGAAATAG+TGG | - | chr1_1:52965648-52965667 | Msa0028170:intron | 30.0% | |
| ATCTGCCTATTCAAATAATC+TGG | + | chr1_1:52965760-52965779 | None:intergenic | 30.0% | |
| TATTTGAATAGGCAGATTTC+AGG | - | chr1_1:52965763-52965782 | Msa0028170:intron | 30.0% | |
| ATTTGAATAGGCAGATTTCA+GGG | - | chr1_1:52965764-52965783 | Msa0028170:intron | 30.0% | |
| !! | TGTTTCTCAAGAGTTTTTAG+TGG | - | chr1_1:52965854-52965873 | Msa0028170:intron | 30.0% |
| ACAAAGAACAAACTGAAGAA+AGG | + | chr1_1:52966078-52966097 | None:intergenic | 30.0% | |
| !! | GGGATTAGAACATTGATTTA+TGG | - | chr1_1:52966124-52966143 | Msa0028170:five_prime_UTR | 30.0% |
| !! | ATTTGGGTTGCGTTATATTG+GGG | + | chr1_1:52965190-52965209 | None:intergenic | 35.0% |
| !! | GATTTGGGTTGCGTTATATT+GGG | + | chr1_1:52965191-52965210 | None:intergenic | 35.0% |
| !! | TGATTTGGGTTGCGTTATAT+TGG | + | chr1_1:52965192-52965211 | None:intergenic | 35.0% |
| ACTTTACCTGTTGAATCTGA+AGG | + | chr1_1:52965322-52965341 | None:intergenic | 35.0% | |
| ATTCAGCTGTGAACCAAAAA+AGG | - | chr1_1:52965437-52965456 | Msa0028170:intron | 35.0% | |
| TCCTTAATAGTATCCAAGCT+AGG | + | chr1_1:52965802-52965821 | None:intergenic | 35.0% | |
| !! | GAAGTTGGTATATGCAGAAA+AGG | + | chr1_1:52966017-52966036 | None:intergenic | 35.0% |
| !! | ATTTGGGTTGCGTTATATTG+GGG | + | chr1_1:52965190-52965209 | None:intergenic | 35.0% |
| !! | GATTTGGGTTGCGTTATATT+GGG | + | chr1_1:52965191-52965210 | None:intergenic | 35.0% |
| !! | TGATTTGGGTTGCGTTATAT+TGG | + | chr1_1:52965192-52965211 | None:intergenic | 35.0% |
| ACTTTACCTGTTGAATCTGA+AGG | + | chr1_1:52965322-52965341 | None:intergenic | 35.0% | |
| ATTCAGCTGTGAACCAAAAA+AGG | - | chr1_1:52965437-52965456 | Msa0028170:intron | 35.0% | |
| TCCTTAATAGTATCCAAGCT+AGG | + | chr1_1:52965802-52965821 | None:intergenic | 35.0% | |
| !! | GAAGTTGGTATATGCAGAAA+AGG | + | chr1_1:52966017-52966036 | None:intergenic | 35.0% |
| TTTCGTCCTTCAGATTCAAC+AGG | - | chr1_1:52965313-52965332 | Msa0028170:intron | 40.0% | |
| AACAGTGGCAGAGTTAATGA+TGG | - | chr1_1:52965384-52965403 | Msa0028170:intron | 40.0% | |
| !!! | GTAATGGTGTTGGCCTTTTT+TGG | + | chr1_1:52965453-52965472 | None:intergenic | 40.0% |
| !! | CGATTTTTCGGAGAATTTGC+CGG | - | chr1_1:52965717-52965736 | Msa0028170:intron | 40.0% |
| AATTTGCCGGACATATTGGA+AGG | - | chr1_1:52965730-52965749 | Msa0028170:intron | 40.0% | |
| ATTTGCCGGACATATTGGAA+GGG | - | chr1_1:52965731-52965750 | Msa0028170:intron | 40.0% | |
| GGAGGCCAGATTATTTGAAT+AGG | - | chr1_1:52965752-52965771 | Msa0028170:intron | 40.0% | |
| AATAGGCAGATTTCAGGGAA+AGG | - | chr1_1:52965769-52965788 | Msa0028170:intron | 40.0% | |
| ATAGGCAGATTTCAGGGAAA+GGG | - | chr1_1:52965770-52965789 | Msa0028170:intron | 40.0% | |
| GCCTAGCTTGGATACTATTA+AGG | - | chr1_1:52965798-52965817 | Msa0028170:intron | 40.0% | |
| TTGAGCAGCATTACAGAAGT+TGG | + | chr1_1:52966032-52966051 | None:intergenic | 40.0% | |
| TTTCGTCCTTCAGATTCAAC+AGG | - | chr1_1:52965313-52965332 | Msa0028170:intron | 40.0% | |
| AACAGTGGCAGAGTTAATGA+TGG | - | chr1_1:52965384-52965403 | Msa0028170:intron | 40.0% | |
| !!! | GTAATGGTGTTGGCCTTTTT+TGG | + | chr1_1:52965453-52965472 | None:intergenic | 40.0% |
| !! | CGATTTTTCGGAGAATTTGC+CGG | - | chr1_1:52965717-52965736 | Msa0028170:intron | 40.0% |
| AATTTGCCGGACATATTGGA+AGG | - | chr1_1:52965730-52965749 | Msa0028170:intron | 40.0% | |
| ATTTGCCGGACATATTGGAA+GGG | - | chr1_1:52965731-52965750 | Msa0028170:intron | 40.0% | |
| GGAGGCCAGATTATTTGAAT+AGG | - | chr1_1:52965752-52965771 | Msa0028170:intron | 40.0% | |
| AATAGGCAGATTTCAGGGAA+AGG | - | chr1_1:52965769-52965788 | Msa0028170:intron | 40.0% | |
| ATAGGCAGATTTCAGGGAAA+GGG | - | chr1_1:52965770-52965789 | Msa0028170:intron | 40.0% | |
| GCCTAGCTTGGATACTATTA+AGG | - | chr1_1:52965798-52965817 | Msa0028170:intron | 40.0% | |
| TTGAGCAGCATTACAGAAGT+TGG | + | chr1_1:52966032-52966051 | None:intergenic | 40.0% | |
| GGTTGCGTTATATTGGGGTT+GGG | + | chr1_1:52965185-52965204 | None:intergenic | 45.0% | |
| ! | TTGTCAGCAGGTAATGGTGT+TGG | + | chr1_1:52965463-52965482 | None:intergenic | 45.0% |
| AGCTTCTTGTCAGCAGGTAA+TGG | + | chr1_1:52965469-52965488 | None:intergenic | 45.0% | |
| ! | ATCTCTAGCTTCTTGTCAGC+AGG | + | chr1_1:52965475-52965494 | None:intergenic | 45.0% |
| TTGATGCTTCCAGTGAAGCA+AGG | - | chr1_1:52965508-52965527 | Msa0028170:CDS | 45.0% | |
| TGATGCTTCCAGTGAAGCAA+GGG | - | chr1_1:52965509-52965528 | Msa0028170:CDS | 45.0% | |
| !! | GGGAAGCCTATTGGTTTAAG+CGG | - | chr1_1:52965529-52965548 | Msa0028170:CDS | 45.0% |
| TCTTCGCCGCTTAAACCAAT+AGG | + | chr1_1:52965538-52965557 | None:intergenic | 45.0% | |
| !!! | AACTCGCCGAGTTTTGTTGA+TGG | - | chr1_1:52965558-52965577 | Msa0028170:CDS | 45.0% |
| ! | ACAGTGAAATAGTGGAGCCT+CGG | - | chr1_1:52965656-52965675 | Msa0028170:intron | 45.0% |
| ! | GGGAGAGAGACACGATTTTT+CGG | - | chr1_1:52965705-52965724 | Msa0028170:intron | 45.0% |
| GGAGAATTTGCCGGACATAT+TGG | - | chr1_1:52965726-52965745 | Msa0028170:intron | 45.0% | |
| GGTTGCGTTATATTGGGGTT+GGG | + | chr1_1:52965185-52965204 | None:intergenic | 45.0% | |
| ! | TTGTCAGCAGGTAATGGTGT+TGG | + | chr1_1:52965463-52965482 | None:intergenic | 45.0% |
| AGCTTCTTGTCAGCAGGTAA+TGG | + | chr1_1:52965469-52965488 | None:intergenic | 45.0% | |
| ! | ATCTCTAGCTTCTTGTCAGC+AGG | + | chr1_1:52965475-52965494 | None:intergenic | 45.0% |
| TTGATGCTTCCAGTGAAGCA+AGG | - | chr1_1:52965508-52965527 | Msa0028170:CDS | 45.0% | |
| TGATGCTTCCAGTGAAGCAA+GGG | - | chr1_1:52965509-52965528 | Msa0028170:CDS | 45.0% | |
| !! | GGGAAGCCTATTGGTTTAAG+CGG | - | chr1_1:52965529-52965548 | Msa0028170:CDS | 45.0% |
| TCTTCGCCGCTTAAACCAAT+AGG | + | chr1_1:52965538-52965557 | None:intergenic | 45.0% | |
| !!! | AACTCGCCGAGTTTTGTTGA+TGG | - | chr1_1:52965558-52965577 | Msa0028170:CDS | 45.0% |
| ! | ACAGTGAAATAGTGGAGCCT+CGG | - | chr1_1:52965656-52965675 | Msa0028170:intron | 45.0% |
| ! | GGGAGAGAGACACGATTTTT+CGG | - | chr1_1:52965705-52965724 | Msa0028170:intron | 45.0% |
| GGAGAATTTGCCGGACATAT+TGG | - | chr1_1:52965726-52965745 | Msa0028170:intron | 45.0% | |
| GGGTTGCGTTATATTGGGGT+TGG | + | chr1_1:52965186-52965205 | None:intergenic | 50.0% | |
| ATAGGCTTCCCTTGCTTCAC+TGG | + | chr1_1:52965520-52965539 | None:intergenic | 50.0% | |
| GTGAAGCAAGGGAAGCCTAT+TGG | - | chr1_1:52965520-52965539 | Msa0028170:CDS | 50.0% | |
| !! | GAAGAGGTGATGGAGGAGAA+GGG | - | chr1_1:52965685-52965704 | Msa0028170:intron | 50.0% |
| GGGTTGCGTTATATTGGGGT+TGG | + | chr1_1:52965186-52965205 | None:intergenic | 50.0% | |
| ATAGGCTTCCCTTGCTTCAC+TGG | + | chr1_1:52965520-52965539 | None:intergenic | 50.0% | |
| GTGAAGCAAGGGAAGCCTAT+TGG | - | chr1_1:52965520-52965539 | Msa0028170:CDS | 50.0% | |
| !! | GAAGAGGTGATGGAGGAGAA+GGG | - | chr1_1:52965685-52965704 | Msa0028170:intron | 50.0% |
| ! | GTGAAATAGTGGAGCCTCGG+AGG | - | chr1_1:52965659-52965678 | Msa0028170:intron | 55.0% |
| ! | AATAGTGGAGCCTCGGAGGA+AGG | - | chr1_1:52965663-52965682 | Msa0028170:intron | 55.0% |
| ATCACCTCTTCCTTCCTCCG+AGG | + | chr1_1:52965676-52965695 | None:intergenic | 55.0% | |
| TCGGAGGAAGGAAGAGGTGA+TGG | - | chr1_1:52965675-52965694 | Msa0028170:intron | 55.0% | |
| ! | GAGGAAGGAAGAGGTGATGG+AGG | - | chr1_1:52965678-52965697 | Msa0028170:intron | 55.0% |
| !! | GGAAGAGGTGATGGAGGAGA+AGG | - | chr1_1:52965684-52965703 | Msa0028170:intron | 55.0% |
| TGCCGGACATATTGGAAGGG+AGG | - | chr1_1:52965734-52965753 | Msa0028170:intron | 55.0% | |
| GGCCTCCCTTCCAATATGTC+CGG | + | chr1_1:52965739-52965758 | None:intergenic | 55.0% | |
| GGCAGATTTCAGGGAAAGGG+TGG | - | chr1_1:52965773-52965792 | Msa0028170:intron | 55.0% | |
| GAAAGGGTGGAAGCCTAGCT+TGG | - | chr1_1:52965786-52965805 | Msa0028170:intron | 55.0% | |
| ! | GTGAAATAGTGGAGCCTCGG+AGG | - | chr1_1:52965659-52965678 | Msa0028170:intron | 55.0% |
| ! | AATAGTGGAGCCTCGGAGGA+AGG | - | chr1_1:52965663-52965682 | Msa0028170:intron | 55.0% |
| ATCACCTCTTCCTTCCTCCG+AGG | + | chr1_1:52965676-52965695 | None:intergenic | 55.0% | |
| TCGGAGGAAGGAAGAGGTGA+TGG | - | chr1_1:52965675-52965694 | Msa0028170:intron | 55.0% | |
| ! | GAGGAAGGAAGAGGTGATGG+AGG | - | chr1_1:52965678-52965697 | Msa0028170:intron | 55.0% |
| !! | GGAAGAGGTGATGGAGGAGA+AGG | - | chr1_1:52965684-52965703 | Msa0028170:intron | 55.0% |
| TGCCGGACATATTGGAAGGG+AGG | - | chr1_1:52965734-52965753 | Msa0028170:intron | 55.0% | |
| GGCCTCCCTTCCAATATGTC+CGG | + | chr1_1:52965739-52965758 | None:intergenic | 55.0% | |
| GGCAGATTTCAGGGAAAGGG+TGG | - | chr1_1:52965773-52965792 | Msa0028170:intron | 55.0% | |
| GAAAGGGTGGAAGCCTAGCT+TGG | - | chr1_1:52965786-52965805 | Msa0028170:intron | 55.0% | |
| GGAGCCTCGGAGGAAGGAAG+AGG | - | chr1_1:52965669-52965688 | Msa0028170:intron | 65.0% | |
| GGAGCCTCGGAGGAAGGAAG+AGG | - | chr1_1:52965669-52965688 | Msa0028170:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 52965144 | 52966168 | 52965144 | ID=Msa0028170;Name=Msa0028170 |
| chr1_1 | mRNA | 52965144 | 52966168 | 52965144 | ID=Msa0028170-mRNA-1;Parent=Msa0028170;Name=Msa0028170-mRNA-1;_AED=0.31;_eAED=0.37;_QI=151|0|0.33|1|0|0|3|0|98 |
| chr1_1 | exon | 52965144 | 52965199 | 52965144 | ID=Msa0028170-mRNA-1:exon:15578;Parent=Msa0028170-mRNA-1 |
| chr1_1 | exon | 52965447 | 52965644 | 52965447 | ID=Msa0028170-mRNA-1:exon:15577;Parent=Msa0028170-mRNA-1 |
| chr1_1 | exon | 52965978 | 52966168 | 52965978 | ID=Msa0028170-mRNA-1:exon:15576;Parent=Msa0028170-mRNA-1 |
| chr1_1 | five_prime_UTR | 52966018 | 52966168 | 52966018 | ID=Msa0028170-mRNA-1:five_prime_utr;Parent=Msa0028170-mRNA-1 |
| chr1_1 | CDS | 52965978 | 52966017 | 52965978 | ID=Msa0028170-mRNA-1:cds;Parent=Msa0028170-mRNA-1 |
| chr1_1 | CDS | 52965447 | 52965644 | 52965447 | ID=Msa0028170-mRNA-1:cds;Parent=Msa0028170-mRNA-1 |
| chr1_1 | CDS | 52965144 | 52965199 | 52965144 | ID=Msa0028170-mRNA-1:cds;Parent=Msa0028170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
