AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0053000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053000 MtrunA17_Chr1g0151951 97.634 930 22 0 1 930 1 930 0.0 1895
Msa0053000 MtrunA17_Chr3g0135341 78.817 727 152 1 204 930 16 740 0.0 1237
Msa0053000 MtrunA17_Chr3g0135341 29.201 363 227 7 22 365 2 353 2.82e-33 137
Msa0053000 MtrunA17_Chr3g0145541 32.724 492 311 9 450 930 77 559 1.57e-79 269
Msa0053000 MtrunA17_Chr7g0223191 30.483 538 326 14 388 912 17 519 1.65e-68 238
Msa0053000 MtrunA17_Chr5g0421191 29.870 539 324 13 388 910 43 543 1.03e-66 234
Msa0053000 MtrunA17_Chr1g0207211 28.272 573 359 14 377 930 41 580 1.59e-65 231
Msa0053000 MtrunA17_Chr4g0037551 29.787 564 348 15 373 921 31 561 2.85e-63 224
Msa0053000 MtrunA17_Chr1g0207241 28.285 548 348 13 380 913 50 566 6.67e-60 215
Msa0053000 MtrunA17_Chr1g0207231 28.747 487 314 14 462 930 1 472 1.39e-58 208
Msa0053000 MtrunA17_Chr1g0207201 29.638 469 301 11 462 915 1 455 1.89e-57 205
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053000 AT1G58370.2 67.334 949 284 8 1 930 1 942 0.0 1320
Msa0053000 AT1G58370.1 69.469 904 265 5 31 930 18 914 0.0 1317
Msa0053000 AT1G58370.1 25.212 353 239 7 198 541 11 347 1.68e-29 127
Msa0053000 AT1G10050.2 60.289 899 333 9 40 930 181 1063 0.0 1123
Msa0053000 AT1G10050.2 34.808 520 300 11 42 546 5 500 6.39e-72 258
Msa0053000 AT1G10050.1 60.289 899 333 9 40 930 181 1063 0.0 1123
Msa0053000 AT1G10050.1 34.808 520 300 11 42 546 5 500 6.39e-72 258
Msa0053000 AT1G10050.3 60.289 899 333 9 40 930 213 1095 0.0 1123
Msa0053000 AT1G10050.3 34.808 520 300 11 42 546 37 532 7.63e-72 258
Msa0053000 AT4G08160.1 65.768 742 237 6 199 930 15 749 0.0 1038
Msa0053000 AT4G08160.1 26.686 341 222 9 43 365 27 357 3.29e-27 119
Msa0053000 AT4G08160.2 66.154 650 203 6 199 838 15 657 0.0 905
Msa0053000 AT4G08160.2 26.686 341 222 9 43 365 27 357 2.39e-27 119
Msa0053000 AT4G38650.1 34.161 483 291 10 464 930 91 562 1.23e-80 272
Msa0053000 AT4G33830.1 27.322 549 357 12 388 924 47 565 1.66e-67 236
Msa0053000 AT4G33840.1 26.993 552 350 14 388 921 46 562 2.43e-62 222
Msa0053000 AT4G33860.1 27.737 548 343 15 388 917 46 558 5.28e-62 221
Msa0053000 AT4G38300.1 42.353 255 135 3 561 813 12 256 2.41e-61 210
Msa0053000 AT4G33810.1 28.745 494 314 16 449 918 33 512 6.53e-53 194
Msa0053000 AT4G33810.5 28.745 494 314 16 449 918 33 512 6.53e-53 194
Msa0053000 AT4G33810.2 28.745 494 314 16 449 918 73 552 1.22e-52 194
Msa0053000 AT4G33810.3 28.745 494 314 16 449 918 73 552 1.22e-52 194
Msa0053000 AT4G33810.4 28.745 494 314 16 449 918 73 552 1.22e-52 194
Msa0053000 AT4G33820.1 27.941 476 310 13 464 918 90 553 2.31e-50 187
Msa0053000 AT2G14690.1 29.012 486 300 18 464 918 82 553 5.71e-48 181

Find 251 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTCTCTTTCTTATTAT+TGG 0.057128 1_2:+7387712 Msa0053000:three_prime_UTR
ATGTGTTCAATGTATTTATT+TGG 0.179825 1_2:-7387149 None:intergenic
GGATAATGTTGTGGGGATTC+TGG 0.188997 1_2:+7387396 Msa0053000:CDS
TGTTCTTCGCTTGATAAATT+AGG 0.196978 1_2:+7387254 Msa0053000:CDS
AGTCTAGTCCCGTGAATTTC+AGG 0.205315 1_2:-7386581 None:intergenic
TCTTTCTCTTTCTTATTATT+GGG 0.218010 1_2:+7387713 Msa0053000:three_prime_UTR
CTCGCGGACACTGCATCTTC+TGG 0.228113 1_2:+7386847 Msa0053000:CDS
TGTTCTGCAAATAAATAAAA+TGG 0.238921 1_2:+7387783 Msa0053000:three_prime_UTR
CCAATTATCATTCAAAACTA+TGG 0.244044 1_2:-7382775 None:intergenic
CTTGATAAATTAGGTATTCT+TGG 0.245839 1_2:+7387263 Msa0053000:CDS
ACTGCTTTAGTTCGAATATA+TGG 0.257375 1_2:+7384641 Msa0053000:CDS
AAGGTAAAGGAATGATTCTT+TGG 0.262620 1_2:-7382637 None:intergenic
GGTAAAATTGTTCCAAAGTC+TGG 0.267756 1_2:+7384521 Msa0053000:CDS
CTAACTTGCACCATGGTGTT+AGG 0.271288 1_2:-7386615 None:intergenic
GAAAATTTCCTTCCAAACTT+TGG 0.272084 1_2:-7382817 None:intergenic
GTATTCTTGGTTTACCGATA+TGG 0.275610 1_2:+7387276 Msa0053000:CDS
AAAGCAGCCAACAAAGATTA+TGG 0.278671 1_2:+7386159 Msa0053000:CDS
ATAGATTAGGCAAAGATATA+AGG 0.281339 1_2:+7387030 Msa0053000:CDS
TATTTAGAGGGACCTCCTTC+TGG 0.284245 1_2:+7385105 Msa0053000:CDS
TCCTTGTGAAACACTTCAAC+TGG 0.287746 1_2:+7386712 Msa0053000:CDS
TGGTTCTGCTTACACGGTTT+CGG 0.290637 1_2:+7383821 Msa0053000:CDS
TATATTCAAGGTCCAGCTTC+TGG 0.294775 1_2:+7386184 Msa0053000:CDS
GCTTGGGTCCGGATTGGTTC+TGG 0.294793 1_2:+7386016 Msa0053000:CDS
AAAATTTCCTTCCAAACTTT+GGG 0.295975 1_2:-7382816 None:intergenic
TTGAGGATGGCCTGAATAAT+TGG 0.299999 1_2:+7384453 Msa0053000:CDS
AGATGCAGTGTCCGCGAGTT+TGG 0.301967 1_2:-7386842 None:intergenic
CAGGGAAAATTCCTTCTAAA+TGG 0.303874 1_2:+7385060 Msa0053000:CDS
ATTCATTTAATCCCAAAGTT+TGG 0.315287 1_2:+7382805 Msa0053000:five_prime_UTR
GCAAAATATTTCCCAGACTT+TGG 0.322421 1_2:-7384533 None:intergenic
CAACAGAGCGAACACAATTC+TGG 0.323587 1_2:+7384561 Msa0053000:CDS
GCTACAAATTATTTGTTCAT+TGG 0.326978 1_2:+7383921 Msa0053000:CDS
TTCTTCCAGACCAATTATTC+AGG 0.328653 1_2:-7384463 None:intergenic
ATATTAATGAAGCTGGAAAA+AGG 0.336260 1_2:+7387468 Msa0053000:CDS
AGCTTCTGGTGTAGACTTAA+TGG 0.340829 1_2:+7386198 Msa0053000:CDS
GATTAAATAGATTAATAAAT+CGG 0.346089 1_2:-7382608 None:intergenic
TATCTTTGCCTAATCTATCT+TGG 0.348489 1_2:-7387025 None:intergenic
CAAAGCGGTCCTTTATTTAG+AGG 0.352566 1_2:+7385092 Msa0053000:CDS
AATCTTGCATGTCTATCAAC+AGG 0.358717 1_2:-7386241 None:intergenic
AAGACATTCGTGCTTGATAA+AGG 0.359363 1_2:+7387620 Msa0053000:CDS
GTATGATATACGTTGTCATT+TGG 0.365712 1_2:-7384179 None:intergenic
GACTTATCAAGTATCTGCTT+GGG 0.366775 1_2:+7386000 Msa0053000:CDS
TGATCAAGGTGTTAATTTGA+TGG 0.367462 1_2:+7383713 Msa0053000:CDS
CGACATTCTTGTTAATACTT+TGG 0.374970 1_2:+7385131 Msa0053000:CDS
AGGTGTTAATTTGATGGATT+CGG 0.376961 1_2:+7383719 Msa0053000:CDS
AAGATTATGGTTTATATTCA+AGG 0.377953 1_2:+7386172 Msa0053000:CDS
ATATAAACCATAATCTTTGT+TGG 0.377974 1_2:-7386166 None:intergenic
GATAATGTTGTGGGGATTCT+GGG 0.382110 1_2:+7387397 Msa0053000:CDS
AACACCTTGATCACCTGCTT+TGG 0.385397 1_2:-7383703 None:intergenic
GGTGTAGACTTAATGGTTGC+CGG 0.385838 1_2:+7386205 Msa0053000:CDS
GGTGCACCAGTAGGTGGAAT+TGG 0.386421 1_2:+7387191 Msa0053000:CDS
GGAATTCAGCAGGAGATAAC+TGG 0.386735 1_2:+7384587 Msa0053000:CDS
CAAATGAGTTGAAGTGGTAT+TGG 0.389711 1_2:+7386745 Msa0053000:CDS
CATAATAAACCCACAATTTG+AGG 0.389860 1_2:+7384436 Msa0053000:CDS
GATGATAGATGGCATGAAAT+TGG 0.390386 1_2:+7386118 Msa0053000:CDS
CTACAGAACTTCTGTTATGA+AGG 0.391792 1_2:+7384028 Msa0053000:intron
GAACAAACGACAGGCCCAAC+TGG 0.393175 1_2:-7387236 None:intergenic
TGGATGAGGGGCCATTTAGA+AGG 0.400067 1_2:-7385071 None:intergenic
CTGGGAGTTGTTTATGAGTA+GGG 0.400841 1_2:+7387415 Msa0053000:CDS
AAGGAGGTCCCTCTAAATAA+AGG 0.403472 1_2:-7385101 None:intergenic
CGGATTGGTTCTGGTTCAAA+TGG 0.403976 1_2:+7386025 Msa0053000:CDS
CTTCTGTTATGAAGGGTAGC+TGG 0.404922 1_2:+7384036 Msa0053000:CDS
TGACTTATCAAGTATCTGCT+TGG 0.409021 1_2:+7385999 Msa0053000:CDS
ATGATCTTGAAGTTATGCTT+AGG 0.411794 1_2:+7387345 Msa0053000:CDS
GAAGGGTAGCTGGGAAAAGT+TGG 0.414542 1_2:+7384046 Msa0053000:CDS
GACCTTGCCAGCATTCGTTT+CGG 0.423092 1_2:-7383767 None:intergenic
GAAGCCCGGATACTCCAAAA+TGG 0.423397 1_2:+7387823 Msa0053000:three_prime_UTR
ATCAAGTATCTGCTTGGGTC+CGG 0.425041 1_2:+7386005 Msa0053000:CDS
GAGTCAGAAGACTGGTTAAT+CGG 0.426105 1_2:-7386941 None:intergenic
GAGTAGGGATAATGCGCATT+TGG 0.427982 1_2:+7387430 Msa0053000:CDS
GATCTCCGAGAGCAGTATAT+AGG 0.429907 1_2:+7384716 Msa0053000:CDS
TGCACTTTAACTGTTAAATC+CGG 0.433057 1_2:+7385833 Msa0053000:CDS
AATTGAGATGCCAAGAGTTC+AGG 0.433547 1_2:-7383656 None:intergenic
TTTATTAATCTATTTAATCA+AGG 0.434121 1_2:+7382612 Msa0053000:five_prime_UTR
TCTGGGAGTTGTTTATGAGT+AGG 0.438626 1_2:+7387414 Msa0053000:CDS
CCGAGGTTTCAGATGATAGA+TGG 0.439585 1_2:+7386107 Msa0053000:CDS
CTTATAAGCAAGTCAATTCC+AGG 0.441038 1_2:-7384131 None:intergenic
ATGGCTCACCCTGCTGTTGA+AGG 0.441932 1_2:+7387374 Msa0053000:CDS
TCGCGGACACTGCATCTTCT+GGG 0.447820 1_2:+7386848 Msa0053000:CDS
AACTTGGATGGGTCCTGCTC+AGG 0.448950 1_2:+7385949 Msa0053000:CDS
CCGATGTACGAGCTACTTTG+TGG 0.450712 1_2:+7384681 Msa0053000:CDS
AAATAAAATACAACCCGATC+GGG 0.455406 1_2:-7384095 None:intergenic
AATCAATTGACACCTCCATT+GGG 0.455457 1_2:-7387649 None:intergenic
TAATTCAAATTCCCTTGTTG+TGG 0.456285 1_2:-7386774 None:intergenic
ATATACTGCTCTCGGAGATC+TGG 0.456294 1_2:-7384713 None:intergenic
TAGATTAGGCAAAGATATAA+GGG 0.456329 1_2:+7387031 Msa0053000:CDS
TACAGATTGGGTGACGCTGC+AGG 0.458097 1_2:+7385041 Msa0053000:CDS
TATTTGGAAGGACCTGCTCC+TGG 0.458649 1_2:+7384113 Msa0053000:CDS
TGCAGGCAACCGATACAGAT+TGG 0.460115 1_2:+7385028 Msa0053000:CDS
TGGAGTATCCGACCTTTCTC+AGG 0.461041 1_2:+7383851 Msa0053000:CDS
CTCTAAATAAAGGACCGCTT+TGG 0.461695 1_2:-7385091 None:intergenic
TCAAGTTCTGTAAACCATAT+CGG 0.462220 1_2:-7387290 None:intergenic
TCAGGCCATCCTCAAATTGT+GGG 0.462609 1_2:-7384445 None:intergenic
ACAAATTATTTGTTCATTGG+AGG 0.463668 1_2:+7383924 Msa0053000:CDS
CAGTCTTCTGACTCGCTACA+AGG 0.465425 1_2:+7386950 Msa0053000:CDS
AACAGGGAAAATTTGAAGTC+CGG 0.469589 1_2:-7386224 None:intergenic
AAATCAATTGACACCTCCAT+TGG 0.470910 1_2:-7387650 None:intergenic
TCTCAAATGACCTGAACTCT+TGG 0.471487 1_2:+7383646 Msa0053000:CDS
GCCATTGGTGGAAGTATATG+AGG 0.473608 1_2:-7385860 None:intergenic
TAAAGGACCGCTTTGGATGA+GGG 0.474678 1_2:-7385084 None:intergenic
TTCTGTTATGAAGGGTAGCT+GGG 0.476279 1_2:+7384037 Msa0053000:CDS
TAATAGAACACAAACTTGGA+TGG 0.479975 1_2:+7385937 Msa0053000:CDS
AATCTTTCTGATGATACAAA+AGG 0.480154 1_2:+7385791 Msa0053000:CDS
TTCAGGCCATCCTCAAATTG+TGG 0.482816 1_2:-7384446 None:intergenic
AAAAGTCCAACCTGTGCAGC+TGG 0.483187 1_2:-7385192 None:intergenic
TGAATTCCAATTCCACCTAC+TGG 0.483936 1_2:-7387197 None:intergenic
ATAAAGGACCGCTTTGGATG+AGG 0.485822 1_2:-7385085 None:intergenic
TACTTCATGGCTATGAAGCC+CGG 0.487498 1_2:+7387809 Msa0053000:three_prime_UTR
TAACTTGCACCATGGTGTTA+GGG 0.487515 1_2:-7386614 None:intergenic
ACAGAAACATGTGTTTCTAC+TGG 0.488657 1_2:+7384401 Msa0053000:CDS
TGGACGTGTGCAGCGCAAGC+TGG 0.489540 1_2:+7384607 Msa0053000:CDS
AACATTATCCCTTCAACAGC+AGG 0.489684 1_2:-7387383 None:intergenic
ACACAGAACGATTTCCCGAT+TGG 0.490031 1_2:+7386642 Msa0053000:CDS
AGAGAATCTCTTGCCATTGG+TGG 0.492478 1_2:-7385872 None:intergenic
CCACTGATTGTCAGCGCCAA+GGG 0.492864 1_2:-7386068 None:intergenic
TAAGTAAAGATCAAAGGTAA+AGG 0.495001 1_2:-7382650 None:intergenic
TGGAAGTATATGAGGAGAAC+CGG 0.495790 1_2:-7385852 None:intergenic
GTATCTGCTTGGGTCCGGAT+TGG 0.496695 1_2:+7386010 Msa0053000:CDS
TGATCTTGAAGTTATGCTTA+GGG 0.496879 1_2:+7387346 Msa0053000:CDS
CAAGTATGTAGCGGCCACTT+AGG 0.497787 1_2:-7385910 None:intergenic
GTAGGTGGAATTGGAATTCA+AGG 0.497831 1_2:+7387200 Msa0053000:CDS
GTAAAATTGTTCCAAAGTCT+GGG 0.498320 1_2:+7384522 Msa0053000:CDS
ACACTGCATCTTCTGGGAAG+TGG 0.498790 1_2:+7386854 Msa0053000:CDS
TTCGACACCACCAGCTGCAC+AGG 0.498795 1_2:+7385182 Msa0053000:CDS
TGGCATCTCAATTGCTGCAA+TGG 0.499335 1_2:+7383666 Msa0053000:CDS
AGCAAGTCAATTCCAGGAGC+AGG 0.502349 1_2:-7384125 None:intergenic
CTGCTGATGCATGTTCCAAT+CGG 0.505222 1_2:-7386657 None:intergenic
TGCTGATGCATGTTCCAATC+GGG 0.506348 1_2:-7386656 None:intergenic
TTCCATTGGTTCTGCTTACA+CGG 0.506731 1_2:+7383815 Msa0053000:CDS
TTTGTTTGACAGATAATGGC+AGG 0.509365 1_2:+7383567 Msa0053000:intron
GAAATCTCACTCTCACTCTC+AGG 0.509622 1_2:+7382966 Msa0053000:CDS
GAAGGTGATATTAATGAAGC+TGG 0.509952 1_2:+7387461 Msa0053000:CDS
CAAATTATTTGTTCATTGGA+GGG 0.512221 1_2:+7383925 Msa0053000:CDS
TCACCGACCGAAACGAATGC+TGG 0.517919 1_2:+7383760 Msa0053000:CDS
CGTTACTCGCAAATTTGAGT+GGG 0.518510 1_2:+7382866 Msa0053000:five_prime_UTR
ATATACGTTGTCATTTGGAA+TGG 0.520996 1_2:-7384174 None:intergenic
AATGATTATCATATTGAAGA+TGG 0.521478 1_2:+7387107 Msa0053000:CDS
CAATTATCATTCAAAACTAT+GGG 0.521910 1_2:-7382774 None:intergenic
GCAGGCAACCGATACAGATT+GGG 0.524439 1_2:+7385029 Msa0053000:CDS
ATTTAATCCCAAAGTTTGGA+AGG 0.524555 1_2:+7382809 Msa0053000:five_prime_UTR
GATGGCCTGAATAATTGGTC+TGG 0.525772 1_2:+7384458 Msa0053000:CDS
GCTGACAATCAGTGGATCAA+TGG 0.526079 1_2:+7386076 Msa0053000:CDS
TAACTAATAGAACACAAACT+TGG 0.526101 1_2:+7385933 Msa0053000:CDS
TTCTCGGTGATCACCTGAGC+AGG 0.526932 1_2:-7385962 None:intergenic
AAAGCGGTCCTTTATTTAGA+GGG 0.527863 1_2:+7385093 Msa0053000:CDS
CACTGTCGACTAAACCCGAT+CGG 0.527900 1_2:+7384081 Msa0053000:CDS
CATTTGAACCAGAACCAATC+CGG 0.530614 1_2:-7386024 None:intergenic
TCGTCCAAAGCAGGTGATCA+AGG 0.532341 1_2:+7383699 Msa0053000:CDS
CAAATAAAATACAACCCGAT+CGG 0.533364 1_2:-7384096 None:intergenic
AACTAAAGCAGTGATCTCAT+AGG 0.538606 1_2:-7384630 None:intergenic
TTAGCAGCATTGCTCTCACT+TGG 0.539811 1_2:-7383603 None:intergenic
CCATCTATCATCTGAAACCT+CGG 0.542182 1_2:-7386107 None:intergenic
ATAATGGCAGGAAACATCTC+TGG 0.543211 1_2:+7383579 Msa0053000:CDS
ACTGTCGACTAAACCCGATC+GGG 0.543731 1_2:+7384082 Msa0053000:CDS
AGAGATTCTCTTGGACCTCA+CGG 0.543735 1_2:+7385884 Msa0053000:CDS
CGATGTACGAGCTACTTTGT+GGG 0.544129 1_2:+7384682 Msa0053000:CDS
CCAAGAGAATCTCTTGCCAT+TGG 0.545862 1_2:-7385875 None:intergenic
CATCAGCAGATTCCTGAGAA+AGG 0.546491 1_2:-7383863 None:intergenic
CAAGGTCAATTCAACTTCAG+AGG 0.546491 1_2:+7387545 Msa0053000:CDS
CCCTTGGCGCTGACAATCAG+TGG 0.546637 1_2:+7386068 Msa0053000:CDS
TATGTAATTTCGTCCAAAGC+AGG 0.547223 1_2:+7383690 Msa0053000:CDS
GATTGTGTTGCATGATTCCA+TGG 0.547938 1_2:+7384493 Msa0053000:CDS
CAATGCCTATATACTGCTCT+CGG 0.551465 1_2:-7384721 None:intergenic
CAGCGTCACCCAATCTGTAT+CGG 0.552312 1_2:-7385037 None:intergenic
GATGTTGTCCTGAAATTCAC+GGG 0.552954 1_2:+7386573 Msa0053000:CDS
ATCACAGACAGAATTTCCAT+TGG 0.553945 1_2:+7383801 Msa0053000:CDS
ATTAAGTCTACACCAGAAGC+TGG 0.555364 1_2:-7386196 None:intergenic
ACAGATTGGGTGACGCTGCA+GGG 0.562053 1_2:+7385042 Msa0053000:CDS
ATTCTGGAATGGAATTCAGC+AGG 0.562599 1_2:+7384577 Msa0053000:CDS
GACACATAGATAGTCCAGTT+GGG 0.564049 1_2:+7387222 Msa0053000:CDS
TACTCGCAAATTTGAGTGGG+GGG 0.565337 1_2:+7382869 Msa0053000:five_prime_UTR
TGTTGAAGGGATAATGTTGT+GGG 0.565574 1_2:+7387388 Msa0053000:CDS
GAGATTTCTTATGTTTCGAG+TGG 0.565861 1_2:-7382951 None:intergenic
TATATAGTTAATGCATGAAG+AGG 0.566208 1_2:+7382896 Msa0053000:exon
AGATTTCTTATGTTTCGAGT+GGG 0.566960 1_2:-7382950 None:intergenic
TTCTAGCTTTGAAACAAGAG+TGG 0.568232 1_2:+7387492 Msa0053000:CDS
CTGTTGAAGGGATAATGTTG+TGG 0.569366 1_2:+7387387 Msa0053000:CDS
TGATGTTGTCCTGAAATTCA+CGG 0.569487 1_2:+7386572 Msa0053000:CDS
TGCATCTTCTGGGAAGTGGA+TGG 0.570497 1_2:+7386858 Msa0053000:CDS
CCCAGTTGAAGTGTTTCACA+AGG 0.574593 1_2:-7386713 None:intergenic
CATGGTCATGTTGATGAACA+AGG 0.575070 1_2:+7387527 Msa0053000:CDS
CAAAATGTGAATGTTGCCCT+TGG 0.576433 1_2:+7386052 Msa0053000:CDS
TCCACTGATTGTCAGCGCCA+AGG 0.576601 1_2:-7386069 None:intergenic
TACAGAACTTCTGTTATGAA+GGG 0.577471 1_2:+7384029 Msa0053000:intron
TTACTCGCAAATTTGAGTGG+GGG 0.579610 1_2:+7382868 Msa0053000:five_prime_UTR
AATAGAACACAAACTTGGAT+GGG 0.580771 1_2:+7385938 Msa0053000:CDS
AATACTTGAATTGAAATGAA+AGG 0.581169 1_2:-7382678 None:intergenic
GCGTTACTCGCAAATTTGAG+TGG 0.582694 1_2:+7382865 Msa0053000:five_prime_UTR
TTTCTGATGATACAAAAGGA+TGG 0.583068 1_2:+7385795 Msa0053000:CDS
GCGAAGTAAGTAAAGATCAA+AGG 0.583633 1_2:-7382656 None:intergenic
CCAATGGCAAGAGATTCTCT+TGG 0.584474 1_2:+7385875 Msa0053000:CDS
ATTCTTGATTTGCAAGAACA+AGG 0.585580 1_2:+7387170 Msa0053000:CDS
ACACAAGGTTAAAAGATCAT+CGG 0.586038 1_2:-7386805 None:intergenic
AGCAGATTCCTGAGAAAGGT+CGG 0.586373 1_2:-7383859 None:intergenic
TCCTCATATACTTCCACCAA+TGG 0.587699 1_2:+7385859 Msa0053000:CDS
ATGTAGCGGACGGATCTAGT+TGG 0.589460 1_2:-7387076 None:intergenic
ACAAAAGGATGGTTTCCACT+TGG 0.589690 1_2:+7385806 Msa0053000:CDS
GAGCGAACACAATTCTGGAA+TGG 0.589696 1_2:+7384566 Msa0053000:CDS
TGGCTCACCCTGCTGTTGAA+GGG 0.590829 1_2:+7387375 Msa0053000:CDS
GACCGAAACGAATGCTGGCA+AGG 0.591612 1_2:+7383765 Msa0053000:CDS
AAAGGACCGCTTTGGATGAG+GGG 0.593030 1_2:-7385083 None:intergenic
CCTTGTGAAACACTTCAACT+GGG 0.594599 1_2:+7386713 Msa0053000:CDS
AGTTATGCTTAGGGAAGCCA+TGG 0.595340 1_2:+7387355 Msa0053000:CDS
ACAAGAATGTCGGTGCCAGA+AGG 0.599405 1_2:-7385120 None:intergenic
CCACAAAGTAGCTCGTACAT+CGG 0.600541 1_2:-7384681 None:intergenic
GGACACATAGATAGTCCAGT+TGG 0.600637 1_2:+7387221 Msa0053000:CDS
TTCAACAGCAGGGTGAGCCA+TGG 0.602273 1_2:-7387372 None:intergenic
AACCGTGTAAGCAGAACCAA+TGG 0.602847 1_2:-7383817 None:intergenic
TGATAAAGGTGACTCCCCAA+TGG 0.604356 1_2:+7387634 Msa0053000:CDS
TTGCCAGCATTCGTTTCGGT+CGG 0.605263 1_2:-7383763 None:intergenic
TGGATGGAACTGTTCAGCAA+TGG 0.607765 1_2:+7386874 Msa0053000:CDS
TATTGGACTGAGCCACAACA+AGG 0.608767 1_2:+7386762 Msa0053000:CDS
TGTGCAGCTGGTGGTGTCGA+AGG 0.611606 1_2:-7385180 None:intergenic
CAAAGTATTAACAAGAATGT+CGG 0.612075 1_2:-7385130 None:intergenic
ATAAACCCACAATTTGAGGA+TGG 0.616157 1_2:+7384440 Msa0053000:CDS
TGGTGTGTTCTAAAGTGTGC+AGG 0.616439 1_2:+7385011 Msa0053000:intron
AGAATGTCGGTGCCAGAAGG+AGG 0.617068 1_2:-7385117 None:intergenic
GAACAAGGTGCACCAGTAGG+TGG 0.617864 1_2:+7387185 Msa0053000:CDS
GATAGATGGCATGAAATTGG+TGG 0.618322 1_2:+7386121 Msa0053000:CDS
TGTTTGCAAATGAGTTGAAG+TGG 0.620891 1_2:+7386739 Msa0053000:CDS
GGACCTCACGGAATCCTAAG+TGG 0.625715 1_2:+7385896 Msa0053000:CDS
GTTACTCGCAAATTTGAGTG+GGG 0.627193 1_2:+7382867 Msa0053000:five_prime_UTR
CTTGTAGCGAGTCAGAAGAC+TGG 0.627289 1_2:-7386949 None:intergenic
TTCACAAACAATGTAGCGGA+CGG 0.628115 1_2:-7387086 None:intergenic
CAAGAACAAGGTGCACCAGT+AGG 0.631924 1_2:+7387182 Msa0053000:CDS
TCAAGCGAAGAACAAACGAC+AGG 0.636980 1_2:-7387245 None:intergenic
GAGTGGCTATCTCACAGTCA+TGG 0.637603 1_2:+7387509 Msa0053000:CDS
GACAATCAGTGGATCAATGG+AGG 0.638760 1_2:+7386079 Msa0053000:CDS
ATCATTCACAAACAATGTAG+CGG 0.639829 1_2:-7387090 None:intergenic
ATCAATTGACACCTCCATTG+GGG 0.643205 1_2:-7387648 None:intergenic
GTTAAAGTGCAATTACCAAG+TGG 0.647484 1_2:-7385821 None:intergenic
GCAGCTGGTGGTGTCGAAGG+AGG 0.648412 1_2:-7385177 None:intergenic
TTTAAAGATGCAGACAGACA+AGG 0.654021 1_2:+7386270 Msa0053000:CDS
GCGCATTTGGTGAATGCTGA+AGG 0.654917 1_2:+7387443 Msa0053000:CDS
AGTCTTCTGACTCGCTACAA+GGG 0.658164 1_2:+7386951 Msa0053000:CDS
GGTAGCTGGGAAAAGTTGGA+AGG 0.662560 1_2:+7384050 Msa0053000:CDS
TTGCATGATTCCATGGCAGA+TGG 0.665285 1_2:+7384500 Msa0053000:CDS
TAAAGGTGACTCCCCAATGG+AGG 0.666453 1_2:+7387637 Msa0053000:CDS
TATTAGTTACAAGTATGTAG+CGG 0.676314 1_2:-7385919 None:intergenic
ATCTTGCATGTCTATCAACA+GGG 0.678115 1_2:-7386240 None:intergenic
GTTAACAATGAAATGCTGCA+TGG 0.679600 1_2:+7386993 Msa0053000:CDS
ACATTATCCCTTCAACAGCA+GGG 0.679952 1_2:-7387382 None:intergenic
TGTTTGTCTAACTTGCACCA+TGG 0.684181 1_2:-7386622 None:intergenic
TCTATGAATGAATATGTGAG+AGG 0.691709 1_2:+7387320 Msa0053000:CDS
AGTCCAACCTGTGCAGCTGG+TGG 0.701591 1_2:-7385189 None:intergenic
GTTGAAGGGATAATGTTGTG+GGG 0.711478 1_2:+7387389 Msa0053000:CDS
AAGTACAAGATCCAAACTCG+CGG 0.714282 1_2:+7386831 Msa0053000:CDS
GATCAATGGAGGACAAACCG+AGG 0.714432 1_2:+7386090 Msa0053000:CDS
ATTGGACTGAGCCACAACAA+GGG 0.716874 1_2:+7386763 Msa0053000:CDS
AAATGGCCCCTCATCCAAAG+CGG 0.728507 1_2:+7385077 Msa0053000:CDS
CGGCCACTTAGGATTCCGTG+AGG 0.735169 1_2:-7385899 None:intergenic
TAGCAGCTACCCTAACACCA+TGG 0.737080 1_2:+7386605 Msa0053000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTAAATAGATTAATAAAT+CGG - chr1_2:7382611-7382630 None:intergenic 10.0%
!! TTTATTAATCTATTTAATCA+AGG + chr1_2:7382612-7382631 Msa0053000:five_prime_UTR 10.0%
!!! ATATTTTTTGAATATTTTTG+GGG - chr1_2:7382747-7382766 None:intergenic 10.0%
!!! GAATATTTTTTGAATATTTT+TGG - chr1_2:7382749-7382768 None:intergenic 10.0%
!! AAAATAAAATAAATTGTTAG+AGG - chr1_2:7385731-7385750 None:intergenic 10.0%
!!! TATTTTTTGAATATTTTTGG+GGG - chr1_2:7382746-7382765 None:intergenic 15.0%
!!! TCATTTTTTCAAATTATTAC+CGG - chr1_2:7383414-7383433 None:intergenic 15.0%
!! AACTAGATAAAAATAACAAA+AGG + chr1_2:7384901-7384920 Msa0053000:intron 15.0%
!! AAATTATCTGTAATTTACAT+TGG + chr1_2:7385218-7385237 Msa0053000:intron 15.0%
!!! ATTTTACATTCTTTATTGAT+AGG + chr1_2:7386347-7386366 Msa0053000:intron 15.0%
!! AATACTTGAATTGAAATGAA+AGG - chr1_2:7382681-7382700 None:intergenic 20.0%
!!! ATTTTTTGAATATTTTTGGG+GGG - chr1_2:7382745-7382764 None:intergenic 20.0%
!! CAATTATCATTCAAAACTAT+GGG - chr1_2:7382777-7382796 None:intergenic 20.0%
!! AGAATCTTAAAAAATAACTG+AGG - chr1_2:7383011-7383030 None:intergenic 20.0%
!!! AAATTACAAAGTCTGAAATA+TGG - chr1_2:7383104-7383123 None:intergenic 20.0%
!!! TCTATCTTTTAAAGAAATTG+AGG + chr1_2:7383975-7383994 Msa0053000:intron 20.0%
!! AACAACTACTATAAATGTTA+AGG - chr1_2:7384982-7385001 None:intergenic 20.0%
!! ACTTCCAATAAATACTTATA+TGG - chr1_2:7385459-7385478 None:intergenic 20.0%
!!! CAAAAATAGCTTTAATTTCT+CGG - chr1_2:7385981-7386000 None:intergenic 20.0%
!! ATATAAACCATAATCTTTGT+TGG - chr1_2:7386169-7386188 None:intergenic 20.0%
!! AAGATTATGGTTTATATTCA+AGG + chr1_2:7386172-7386191 Msa0053000:CDS 20.0%
!! CTAATATATTCTTTCTTCAT+TGG + chr1_2:7386450-7386469 Msa0053000:intron 20.0%
!! GAATAAAAATGATTTGATGA+CGG + chr1_2:7386908-7386927 Msa0053000:CDS 20.0%
!! AATGATTATCATATTGAAGA+TGG + chr1_2:7387107-7387126 Msa0053000:CDS 20.0%
!! ATGTGTTCAATGTATTTATT+TGG - chr1_2:7387152-7387171 None:intergenic 20.0%
!!! ATTTTATGGAACATATAATG+TGG + chr1_2:7387568-7387587 Msa0053000:CDS 20.0%
!! TTCTTTCTCTTTCTTATTAT+TGG + chr1_2:7387712-7387731 Msa0053000:three_prime_UTR 20.0%
!! TCTTTCTCTTTCTTATTATT+GGG + chr1_2:7387713-7387732 Msa0053000:three_prime_UTR 20.0%
!! TGTTCTGCAAATAAATAAAA+TGG + chr1_2:7387783-7387802 Msa0053000:three_prime_UTR 20.0%
!!! AATAAAATGGTTTTACTTCA+TGG + chr1_2:7387796-7387815 Msa0053000:three_prime_UTR 20.0%
! TAAGTAAAGATCAAAGGTAA+AGG - chr1_2:7382653-7382672 None:intergenic 25.0%
!!! TTTTTTGAATATTTTTGGGG+GGG - chr1_2:7382744-7382763 None:intergenic 25.0%
! CCAATTATCATTCAAAACTA+TGG - chr1_2:7382778-7382797 None:intergenic 25.0%
!!! CCATAGTTTTGAATGATAAT+TGG + chr1_2:7382775-7382794 Msa0053000:five_prime_UTR 25.0%
! ATTCATTTAATCCCAAAGTT+TGG + chr1_2:7382805-7382824 Msa0053000:five_prime_UTR 25.0%
! AAAATTTCCTTCCAAACTTT+GGG - chr1_2:7382819-7382838 None:intergenic 25.0%
! TATATAGTTAATGCATGAAG+AGG + chr1_2:7382896-7382915 Msa0053000:exon 25.0%
! TCTTAAAAAATAACTGAGGA+GGG - chr1_2:7383007-7383026 None:intergenic 25.0%
! ATCTTAAAAAATAACTGAGG+AGG - chr1_2:7383008-7383027 None:intergenic 25.0%
! TTGTAAAATGCATGTAGTAA+GGG - chr1_2:7383041-7383060 None:intergenic 25.0%
! TTTGTAAAATGCATGTAGTA+AGG - chr1_2:7383042-7383061 None:intergenic 25.0%
! TAAGGAAAATAGTTTCTTCT+TGG + chr1_2:7383515-7383534 Msa0053000:intron 25.0%
!!! TTGTTTTGTTTGACAGATAA+TGG + chr1_2:7383563-7383582 Msa0053000:intron 25.0%
! GCTACAAATTATTTGTTCAT+TGG + chr1_2:7383921-7383940 Msa0053000:CDS 25.0%
! ACAAATTATTTGTTCATTGG+AGG + chr1_2:7383924-7383943 Msa0053000:CDS 25.0%
! CAAATTATTTGTTCATTGGA+GGG + chr1_2:7383925-7383944 Msa0053000:CDS 25.0%
! AAATAATGGTGAACATGTAA+GGG - chr1_2:7384007-7384026 None:intergenic 25.0%
! AAAATAATGGTGAACATGTA+AGG - chr1_2:7384008-7384027 None:intergenic 25.0%
! AGAAGTTCTGTAGAAAATAA+TGG - chr1_2:7384021-7384040 None:intergenic 25.0%
!!! CAGATACTGTTATTTCTTTA+TGG + chr1_2:7384218-7384237 Msa0053000:intron 25.0%
! TCTTTATGGAATTCTACATA+TGG + chr1_2:7384232-7384251 Msa0053000:intron 25.0%
! TTAAAGAGTGAAACCATAAT+AGG - chr1_2:7384305-7384324 None:intergenic 25.0%
!!! TGTTTTAATAACACACTAAC+TGG + chr1_2:7384343-7384362 Msa0053000:intron 25.0%
!! AAGAGTCAATCTAAAATTCA+TGG - chr1_2:7384848-7384867 None:intergenic 25.0%
!! CAAAGTATTAACAAGAATGT+CGG - chr1_2:7385133-7385152 None:intergenic 25.0%
! CTTGCCATATAAGTATTTAT+TGG + chr1_2:7385452-7385471 Msa0053000:intron 25.0%
! AATAAGCTAAAAACAGCTTA+TGG + chr1_2:7385568-7385587 Msa0053000:intron 25.0%
!!! TAAAAACTTGTTAGACTGTT+TGG - chr1_2:7385624-7385643 None:intergenic 25.0%
! CAATATGAATCTGTTTGAAT+TGG - chr1_2:7385671-7385690 None:intergenic 25.0%
! AACAGATTCATATTGAACTT+CGG + chr1_2:7385676-7385695 Msa0053000:intron 25.0%
!!! ATTTTACAGAATGTTGCTTT+TGG + chr1_2:7385746-7385765 Msa0053000:intron 25.0%
! AATCTTTCTGATGATACAAA+AGG + chr1_2:7385791-7385810 Msa0053000:CDS 25.0%
! TATTAGTTACAAGTATGTAG+CGG - chr1_2:7385922-7385941 None:intergenic 25.0%
! TAACTAATAGAACACAAACT+TGG + chr1_2:7385933-7385952 Msa0053000:CDS 25.0%
! TATATTCTTTCTTCATTGGT+AGG + chr1_2:7386454-7386473 Msa0053000:intron 25.0%
!! TCATTTTACCAAGATAGATT+AGG + chr1_2:7387017-7387036 Msa0053000:CDS 25.0%
! ATAGATTAGGCAAAGATATA+AGG + chr1_2:7387030-7387049 Msa0053000:CDS 25.0%
! TAGATTAGGCAAAGATATAA+GGG + chr1_2:7387031-7387050 Msa0053000:CDS 25.0%
! CTTGATAAATTAGGTATTCT+TGG + chr1_2:7387263-7387282 Msa0053000:CDS 25.0%
! ATATTAATGAAGCTGGAAAA+AGG + chr1_2:7387468-7387487 Msa0053000:CDS 25.0%
AAGGTAAAGGAATGATTCTT+TGG - chr1_2:7382640-7382659 None:intergenic 30.0%
ATTTAATCCCAAAGTTTGGA+AGG + chr1_2:7382809-7382828 Msa0053000:five_prime_UTR 30.0%
GAAAATTTCCTTCCAAACTT+TGG - chr1_2:7382820-7382839 None:intergenic 30.0%
! AAGTTTGGAAGGAAATTTTC+TGG + chr1_2:7382820-7382839 Msa0053000:five_prime_UTR 30.0%
AGTAACGCCTAAGAAAAATT+GGG - chr1_2:7382853-7382872 None:intergenic 30.0%
! AGATTTCTTATGTTTCGAGT+GGG - chr1_2:7382953-7382972 None:intergenic 30.0%
ATGCGATGTATAATGCTTAA+TGG + chr1_2:7383280-7383299 Msa0053000:intron 30.0%
AAAAAATGAAAGCGACTGAA+TGG + chr1_2:7383425-7383444 Msa0053000:intron 30.0%
! TGATCAAGGTGTTAATTTGA+TGG + chr1_2:7383713-7383732 Msa0053000:CDS 30.0%
!! AGGTGTTAATTTGATGGATT+CGG + chr1_2:7383719-7383738 Msa0053000:CDS 30.0%
TACAGAACTTCTGTTATGAA+GGG + chr1_2:7384029-7384048 Msa0053000:intron 30.0%
AAATAAAATACAACCCGATC+GGG - chr1_2:7384098-7384117 None:intergenic 30.0%
CAAATAAAATACAACCCGAT+CGG - chr1_2:7384099-7384118 None:intergenic 30.0%
! ATATACGTTGTCATTTGGAA+TGG - chr1_2:7384177-7384196 None:intergenic 30.0%
GTATGATATACGTTGTCATT+TGG - chr1_2:7384182-7384201 None:intergenic 30.0%
! AACTAGTATTGAGCCTATTA+TGG + chr1_2:7384289-7384308 Msa0053000:intron 30.0%
!! ACTTCTGAAATATGACGAAA+AGG - chr1_2:7384373-7384392 None:intergenic 30.0%
CATAATAAACCCACAATTTG+AGG + chr1_2:7384436-7384455 Msa0053000:CDS 30.0%
GTAAAATTGTTCCAAAGTCT+GGG + chr1_2:7384522-7384541 Msa0053000:CDS 30.0%
! ACTGCTTTAGTTCGAATATA+TGG + chr1_2:7384641-7384660 Msa0053000:CDS 30.0%
!! GAATTTTAGATTGACTCTTG+AGG + chr1_2:7384849-7384868 Msa0053000:intron 30.0%
CGACATTCTTGTTAATACTT+TGG + chr1_2:7385131-7385150 Msa0053000:CDS 30.0%
GTAGATTGATATGAGCTTAT+AGG - chr1_2:7385301-7385320 None:intergenic 30.0%
TCGTGCAAAACAAAAAAGTT+AGG - chr1_2:7385355-7385374 None:intergenic 30.0%
! ATTAAGTTGTCTATCGAAAC+CGG - chr1_2:7385411-7385430 None:intergenic 30.0%
TTTCTGATGATACAAAAGGA+TGG + chr1_2:7385795-7385814 Msa0053000:CDS 30.0%
TGCACTTTAACTGTTAAATC+CGG + chr1_2:7385833-7385852 Msa0053000:CDS 30.0%
TAATAGAACACAAACTTGGA+TGG + chr1_2:7385937-7385956 Msa0053000:CDS 30.0%
AATAGAACACAAACTTGGAT+GGG + chr1_2:7385938-7385957 Msa0053000:CDS 30.0%
TAATTCAAATTCCCTTGTTG+TGG - chr1_2:7386777-7386796 None:intergenic 30.0%
ACACAAGGTTAAAAGATCAT+CGG - chr1_2:7386808-7386827 None:intergenic 30.0%
TATCTTTGCCTAATCTATCT+TGG - chr1_2:7387028-7387047 None:intergenic 30.0%
ATCATTCACAAACAATGTAG+CGG - chr1_2:7387093-7387112 None:intergenic 30.0%
!! ATTCTTGATTTGCAAGAACA+AGG + chr1_2:7387170-7387189 Msa0053000:CDS 30.0%
TGTTCTTCGCTTGATAAATT+AGG + chr1_2:7387254-7387273 Msa0053000:CDS 30.0%
TCAAGTTCTGTAAACCATAT+CGG - chr1_2:7387293-7387312 None:intergenic 30.0%
TCTATGAATGAATATGTGAG+AGG + chr1_2:7387320-7387339 Msa0053000:CDS 30.0%
ATGATCTTGAAGTTATGCTT+AGG + chr1_2:7387345-7387364 Msa0053000:CDS 30.0%
TGATCTTGAAGTTATGCTTA+GGG + chr1_2:7387346-7387365 Msa0053000:CDS 30.0%
! TTCAACTTCAGAGGATTTTA+TGG + chr1_2:7387554-7387573 Msa0053000:CDS 30.0%
! GTCTTCGAAATTTTCTTTGA+TGG - chr1_2:7387605-7387624 None:intergenic 30.0%
GCGAAGTAAGTAAAGATCAA+AGG - chr1_2:7382659-7382678 None:intergenic 35.0%
!! TTGGAAGGAAATTTTCTGGT+TGG + chr1_2:7382824-7382843 Msa0053000:five_prime_UTR 35.0%
! TTGGTCACCCAATTTTTCTT+AGG + chr1_2:7382843-7382862 Msa0053000:five_prime_UTR 35.0%
GAGTAACGCCTAAGAAAAAT+TGG - chr1_2:7382854-7382873 None:intergenic 35.0%
GAGATTTCTTATGTTTCGAG+TGG - chr1_2:7382954-7382973 None:intergenic 35.0%
ATCATCCAATTTGATGAGAC+GGG - chr1_2:7383081-7383100 None:intergenic 35.0%
GATCATCCAATTTGATGAGA+CGG - chr1_2:7383082-7383101 None:intergenic 35.0%
! CTTTAAAAACAGGTCTGCAA+CGG - chr1_2:7383218-7383237 None:intergenic 35.0%
!! TACAGCGAAGCTTTAAAAAC+AGG - chr1_2:7383228-7383247 None:intergenic 35.0%
TGGTGCTTCATAGATTAACA+CGG - chr1_2:7383357-7383376 None:intergenic 35.0%
AGTCTCATCTATATCTGTGT+TGG - chr1_2:7383377-7383396 None:intergenic 35.0%
AACACAGATATAGATGAGAC+TGG + chr1_2:7383376-7383395 Msa0053000:intron 35.0%
ACACAGATATAGATGAGACT+GGG + chr1_2:7383377-7383396 Msa0053000:intron 35.0%
GCATCAACACTTCATATTGA+AGG - chr1_2:7383463-7383482 None:intergenic 35.0%
ACACACACACTAAACACTTA+AGG + chr1_2:7383497-7383516 Msa0053000:intron 35.0%
! TTTGTTTGACAGATAATGGC+AGG + chr1_2:7383567-7383586 Msa0053000:intron 35.0%
TATGTAATTTCGTCCAAAGC+AGG + chr1_2:7383690-7383709 Msa0053000:CDS 35.0%
ATCACAGACAGAATTTCCAT+TGG + chr1_2:7383801-7383820 Msa0053000:CDS 35.0%
CTACAGAACTTCTGTTATGA+AGG + chr1_2:7384028-7384047 Msa0053000:intron 35.0%
!! CGATCGGGTTGTATTTTATT+TGG + chr1_2:7384097-7384116 Msa0053000:CDS 35.0%
!! CGGGTTGTATTTTATTTGGA+AGG + chr1_2:7384101-7384120 Msa0053000:CDS 35.0%
CTTATAAGCAAGTCAATTCC+AGG - chr1_2:7384134-7384153 None:intergenic 35.0%
! ACAGAAACATGTGTTTCTAC+TGG + chr1_2:7384401-7384420 Msa0053000:CDS 35.0%
ATAAACCCACAATTTGAGGA+TGG + chr1_2:7384440-7384459 Msa0053000:CDS 35.0%
TTCTTCCAGACCAATTATTC+AGG - chr1_2:7384466-7384485 None:intergenic 35.0%
! AACAATTTTACCATCTGCCA+TGG - chr1_2:7384513-7384532 None:intergenic 35.0%
GGTAAAATTGTTCCAAAGTC+TGG + chr1_2:7384521-7384540 Msa0053000:CDS 35.0%
GCAAAATATTTCCCAGACTT+TGG - chr1_2:7384536-7384555 None:intergenic 35.0%
AACTAAAGCAGTGATCTCAT+AGG - chr1_2:7384633-7384652 None:intergenic 35.0%
TAGTAGTTGTTGAACAATGC+TGG + chr1_2:7384991-7385010 Msa0053000:intron 35.0%
CAGGGAAAATTCCTTCTAAA+TGG + chr1_2:7385060-7385079 Msa0053000:CDS 35.0%
! AAAGCGGTCCTTTATTTAGA+GGG + chr1_2:7385093-7385112 Msa0053000:CDS 35.0%
! GGTTCGAGTATATTTTACGT+TGG - chr1_2:7385280-7385299 None:intergenic 35.0%
!!! TTTTTGTTTTGCACGAGCAT+TGG + chr1_2:7385359-7385378 Msa0053000:intron 35.0%
! TTAAGTTGTCTATCGAAACC+GGG - chr1_2:7385410-7385429 None:intergenic 35.0%
! GCTGTTTCAATATGCTATCT+TGG + chr1_2:7385533-7385552 Msa0053000:intron 35.0%
GTTAAAGTGCAATTACCAAG+TGG - chr1_2:7385824-7385843 None:intergenic 35.0%
TGACTTATCAAGTATCTGCT+TGG + chr1_2:7385999-7386018 Msa0053000:CDS 35.0%
GACTTATCAAGTATCTGCTT+GGG + chr1_2:7386000-7386019 Msa0053000:CDS 35.0%
GATGATAGATGGCATGAAAT+TGG + chr1_2:7386118-7386137 Msa0053000:CDS 35.0%
!!! TGGCTGCTTTTCAATTCTAA+AGG - chr1_2:7386149-7386168 None:intergenic 35.0%
AAAGCAGCCAACAAAGATTA+TGG + chr1_2:7386159-7386178 Msa0053000:CDS 35.0%
! AACAGGGAAAATTTGAAGTC+CGG - chr1_2:7386227-7386246 None:intergenic 35.0%
ATCTTGCATGTCTATCAACA+GGG - chr1_2:7386243-7386262 None:intergenic 35.0%
AATCTTGCATGTCTATCAAC+AGG - chr1_2:7386244-7386263 None:intergenic 35.0%
TTTAAAGATGCAGACAGACA+AGG + chr1_2:7386270-7386289 Msa0053000:CDS 35.0%
TGATGTTGTCCTGAAATTCA+CGG + chr1_2:7386572-7386591 Msa0053000:CDS 35.0%
! TGTTTGCAAATGAGTTGAAG+TGG + chr1_2:7386739-7386758 Msa0053000:CDS 35.0%
! CAAATGAGTTGAAGTGGTAT+TGG + chr1_2:7386745-7386764 Msa0053000:CDS 35.0%
! GATCTTGTACTTTTGACACA+AGG - chr1_2:7386823-7386842 None:intergenic 35.0%
GTTAACAATGAAATGCTGCA+TGG + chr1_2:7386993-7387012 Msa0053000:CDS 35.0%
GTATTCTTGGTTTACCGATA+TGG + chr1_2:7387276-7387295 Msa0053000:CDS 35.0%
TGTTGAAGGGATAATGTTGT+GGG + chr1_2:7387388-7387407 Msa0053000:CDS 35.0%
GAAGGTGATATTAATGAAGC+TGG + chr1_2:7387461-7387480 Msa0053000:CDS 35.0%
!! TTCTAGCTTTGAAACAAGAG+TGG + chr1_2:7387492-7387511 Msa0053000:CDS 35.0%
AAGACATTCGTGCTTGATAA+AGG + chr1_2:7387620-7387639 Msa0053000:CDS 35.0%
AATCAATTGACACCTCCATT+GGG - chr1_2:7387652-7387671 None:intergenic 35.0%
AAATCAATTGACACCTCCAT+TGG - chr1_2:7387653-7387672 None:intergenic 35.0%
!!! TTTTGCTTTGGCTTGCAGAT+TGG - chr1_2:7382705-7382724 None:intergenic 40.0%
!!! GTCTCTGTGCTTTTTTGCTT+TGG - chr1_2:7382717-7382736 None:intergenic 40.0%
!!! TGAATATTTTTGGGGGGGTT+GGG - chr1_2:7382739-7382758 None:intergenic 40.0%
!!! TTGAATATTTTTGGGGGGGT+TGG - chr1_2:7382740-7382759 None:intergenic 40.0%
CGTTACTCGCAAATTTGAGT+GGG + chr1_2:7382866-7382885 Msa0053000:five_prime_UTR 40.0%
GTTACTCGCAAATTTGAGTG+GGG + chr1_2:7382867-7382886 Msa0053000:five_prime_UTR 40.0%
TTACTCGCAAATTTGAGTGG+GGG + chr1_2:7382868-7382887 Msa0053000:five_prime_UTR 40.0%
CTGAGGAGGGTAAAAAAGTA+AGG - chr1_2:7382994-7383013 None:intergenic 40.0%
TAGACCGTCCAATCTTTGAT+AGG + chr1_2:7383147-7383166 Msa0053000:intron 40.0%
! CTTCATATTGAAGGCGTGTT+CGG - chr1_2:7383454-7383473 None:intergenic 40.0%
ATAATGGCAGGAAACATCTC+TGG + chr1_2:7383579-7383598 Msa0053000:CDS 40.0%
TCTCAAATGACCTGAACTCT+TGG + chr1_2:7383646-7383665 Msa0053000:CDS 40.0%
AATTGAGATGCCAAGAGTTC+AGG - chr1_2:7383659-7383678 None:intergenic 40.0%
!! TTCCATTGGTTCTGCTTACA+CGG + chr1_2:7383815-7383834 Msa0053000:CDS 40.0%
TTCTGTTATGAAGGGTAGCT+GGG + chr1_2:7384037-7384056 Msa0053000:CDS 40.0%
TTGAGGATGGCCTGAATAAT+TGG + chr1_2:7384453-7384472 Msa0053000:CDS 40.0%
GATTGTGTTGCATGATTCCA+TGG + chr1_2:7384493-7384512 Msa0053000:CDS 40.0%
!! ATTCTGGAATGGAATTCAGC+AGG + chr1_2:7384577-7384596 Msa0053000:CDS 40.0%
CAATGCCTATATACTGCTCT+CGG - chr1_2:7384724-7384743 None:intergenic 40.0%
TCGCTAATGCAGAAAACTCA+TGG - chr1_2:7384950-7384969 None:intergenic 40.0%
CTCTAAATAAAGGACCGCTT+TGG - chr1_2:7385094-7385113 None:intergenic 40.0%
! CAAAGCGGTCCTTTATTTAG+AGG + chr1_2:7385092-7385111 Msa0053000:CDS 40.0%
AAGGAGGTCCCTCTAAATAA+AGG - chr1_2:7385104-7385123 None:intergenic 40.0%
GACTGTTTGGAAGAGCTAAT+GGG - chr1_2:7385611-7385630 None:intergenic 40.0%
AGACTGTTTGGAAGAGCTAA+TGG - chr1_2:7385612-7385631 None:intergenic 40.0%
ACAAAAGGATGGTTTCCACT+TGG + chr1_2:7385806-7385825 Msa0053000:CDS 40.0%
! TGGAAGTATATGAGGAGAAC+CGG - chr1_2:7385855-7385874 None:intergenic 40.0%
TCCTCATATACTTCCACCAA+TGG + chr1_2:7385859-7385878 Msa0053000:CDS 40.0%
CATTTGAACCAGAACCAATC+CGG - chr1_2:7386027-7386046 None:intergenic 40.0%
! AGGGCAACATTCACATTTTG+TGG - chr1_2:7386052-7386071 None:intergenic 40.0%
CAAAATGTGAATGTTGCCCT+TGG + chr1_2:7386052-7386071 Msa0053000:CDS 40.0%
! CCATCTATCATCTGAAACCT+CGG - chr1_2:7386110-7386129 None:intergenic 40.0%
GATAGATGGCATGAAATTGG+TGG + chr1_2:7386121-7386140 Msa0053000:CDS 40.0%
TATATTCAAGGTCCAGCTTC+TGG + chr1_2:7386184-7386203 Msa0053000:CDS 40.0%
ATTAAGTCTACACCAGAAGC+TGG - chr1_2:7386199-7386218 None:intergenic 40.0%
AGCTTCTGGTGTAGACTTAA+TGG + chr1_2:7386198-7386217 Msa0053000:CDS 40.0%
! GTTTTTCCACACTGCAGATT+CGG + chr1_2:7386544-7386563 Msa0053000:intron 40.0%
GATGTTGTCCTGAAATTCAC+GGG + chr1_2:7386573-7386592 Msa0053000:CDS 40.0%
! TAACTTGCACCATGGTGTTA+GGG - chr1_2:7386617-7386636 None:intergenic 40.0%
! TGTTTGTCTAACTTGCACCA+TGG - chr1_2:7386625-7386644 None:intergenic 40.0%
TCCTTGTGAAACACTTCAAC+TGG + chr1_2:7386712-7386731 Msa0053000:CDS 40.0%
CCTTGTGAAACACTTCAACT+GGG + chr1_2:7386713-7386732 Msa0053000:CDS 40.0%
AAGTACAAGATCCAAACTCG+CGG + chr1_2:7386831-7386850 Msa0053000:CDS 40.0%
! GAGTCAGAAGACTGGTTAAT+CGG - chr1_2:7386944-7386963 None:intergenic 40.0%
! TTCACAAACAATGTAGCGGA+CGG - chr1_2:7387089-7387108 None:intergenic 40.0%
TGAATTCCAATTCCACCTAC+TGG - chr1_2:7387200-7387219 None:intergenic 40.0%
GTAGGTGGAATTGGAATTCA+AGG + chr1_2:7387200-7387219 Msa0053000:CDS 40.0%
GACACATAGATAGTCCAGTT+GGG + chr1_2:7387222-7387241 Msa0053000:CDS 40.0%
ACATTATCCCTTCAACAGCA+GGG - chr1_2:7387385-7387404 None:intergenic 40.0%
AACATTATCCCTTCAACAGC+AGG - chr1_2:7387386-7387405 None:intergenic 40.0%
CTGTTGAAGGGATAATGTTG+TGG + chr1_2:7387387-7387406 Msa0053000:CDS 40.0%
GTTGAAGGGATAATGTTGTG+GGG + chr1_2:7387389-7387408 Msa0053000:CDS 40.0%
GATAATGTTGTGGGGATTCT+GGG + chr1_2:7387397-7387416 Msa0053000:CDS 40.0%
TCTGGGAGTTGTTTATGAGT+AGG + chr1_2:7387414-7387433 Msa0053000:CDS 40.0%
CTGGGAGTTGTTTATGAGTA+GGG + chr1_2:7387415-7387434 Msa0053000:CDS 40.0%
! CATGGTCATGTTGATGAACA+AGG + chr1_2:7387527-7387546 Msa0053000:CDS 40.0%
CAAGGTCAATTCAACTTCAG+AGG + chr1_2:7387545-7387564 Msa0053000:CDS 40.0%
ATCAATTGACACCTCCATTG+GGG - chr1_2:7387651-7387670 None:intergenic 40.0%
GCGTTACTCGCAAATTTGAG+TGG + chr1_2:7382865-7382884 Msa0053000:five_prime_UTR 45.0%
TACTCGCAAATTTGAGTGGG+GGG + chr1_2:7382869-7382888 Msa0053000:five_prime_UTR 45.0%
GAAATCTCACTCTCACTCTC+AGG + chr1_2:7382966-7382985 Msa0053000:CDS 45.0%
CCGTCCTATCAAAGATTGGA+CGG - chr1_2:7383154-7383173 None:intergenic 45.0%
CCGTCCAATCTTTGATAGGA+CGG + chr1_2:7383151-7383170 Msa0053000:intron 45.0%
GTGACCGTCCTATCAAAGAT+TGG - chr1_2:7383158-7383177 None:intergenic 45.0%
TTAGCAGCATTGCTCTCACT+TGG - chr1_2:7383606-7383625 None:intergenic 45.0%
TGGCATCTCAATTGCTGCAA+TGG + chr1_2:7383666-7383685 Msa0053000:CDS 45.0%
AACACCTTGATCACCTGCTT+TGG - chr1_2:7383706-7383725 None:intergenic 45.0%
AACCGTGTAAGCAGAACCAA+TGG - chr1_2:7383820-7383839 None:intergenic 45.0%
! TGGTTCTGCTTACACGGTTT+CGG + chr1_2:7383821-7383840 Msa0053000:CDS 45.0%
! TACACGGTTTCGGCTTTTGT+TGG + chr1_2:7383831-7383850 Msa0053000:CDS 45.0%
AGCAGATTCCTGAGAAAGGT+CGG - chr1_2:7383862-7383881 None:intergenic 45.0%
CATCAGCAGATTCCTGAGAA+AGG - chr1_2:7383866-7383885 None:intergenic 45.0%
CTTCTGTTATGAAGGGTAGC+TGG + chr1_2:7384036-7384055 Msa0053000:CDS 45.0%
TCAGGCCATCCTCAAATTGT+GGG - chr1_2:7384448-7384467 None:intergenic 45.0%
TTCAGGCCATCCTCAAATTG+TGG - chr1_2:7384449-7384468 None:intergenic 45.0%
GATGGCCTGAATAATTGGTC+TGG + chr1_2:7384458-7384477 Msa0053000:CDS 45.0%
TTGCATGATTCCATGGCAGA+TGG + chr1_2:7384500-7384519 Msa0053000:CDS 45.0%
CAACAGAGCGAACACAATTC+TGG + chr1_2:7384561-7384580 Msa0053000:CDS 45.0%
! GAGCGAACACAATTCTGGAA+TGG + chr1_2:7384566-7384585 Msa0053000:CDS 45.0%
GGAATTCAGCAGGAGATAAC+TGG + chr1_2:7384587-7384606 Msa0053000:CDS 45.0%
CCACAAAGTAGCTCGTACAT+CGG - chr1_2:7384684-7384703 None:intergenic 45.0%
! CGATGTACGAGCTACTTTGT+GGG + chr1_2:7384682-7384701 Msa0053000:CDS 45.0%
ATATACTGCTCTCGGAGATC+TGG - chr1_2:7384716-7384735 None:intergenic 45.0%
GATCTCCGAGAGCAGTATAT+AGG + chr1_2:7384716-7384735 Msa0053000:CDS 45.0%
!! TGGTGTGTTCTAAAGTGTGC+AGG + chr1_2:7385011-7385030 Msa0053000:intron 45.0%
! TAAAGGACCGCTTTGGATGA+GGG - chr1_2:7385087-7385106 None:intergenic 45.0%
! ATAAAGGACCGCTTTGGATG+AGG - chr1_2:7385088-7385107 None:intergenic 45.0%
TATTTAGAGGGACCTCCTTC+TGG + chr1_2:7385105-7385124 Msa0053000:CDS 45.0%
AAGAACTTAGCTGTTGCCCT+AGG + chr1_2:7385384-7385403 Msa0053000:intron 45.0%
! GCCATTGGTGGAAGTATATG+AGG - chr1_2:7385863-7385882 None:intergenic 45.0%
AGAGAATCTCTTGCCATTGG+TGG - chr1_2:7385875-7385894 None:intergenic 45.0%
CCAAGAGAATCTCTTGCCAT+TGG - chr1_2:7385878-7385897 None:intergenic 45.0%
CCAATGGCAAGAGATTCTCT+TGG + chr1_2:7385875-7385894 Msa0053000:CDS 45.0%
AGAGATTCTCTTGGACCTCA+CGG + chr1_2:7385884-7385903 Msa0053000:CDS 45.0%
ATCAAGTATCTGCTTGGGTC+CGG + chr1_2:7386005-7386024 Msa0053000:CDS 45.0%
!! CGGATTGGTTCTGGTTCAAA+TGG + chr1_2:7386025-7386044 Msa0053000:CDS 45.0%
GCTGACAATCAGTGGATCAA+TGG + chr1_2:7386076-7386095 Msa0053000:CDS 45.0%
GACAATCAGTGGATCAATGG+AGG + chr1_2:7386079-7386098 Msa0053000:CDS 45.0%
CCGAGGTTTCAGATGATAGA+TGG + chr1_2:7386107-7386126 Msa0053000:CDS 45.0%
GGTGTAGACTTAATGGTTGC+CGG + chr1_2:7386205-7386224 Msa0053000:CDS 45.0%
AGTCTAGTCCCGTGAATTTC+AGG - chr1_2:7386584-7386603 None:intergenic 45.0%
! CTAACTTGCACCATGGTGTT+AGG - chr1_2:7386618-7386637 None:intergenic 45.0%
ACACAGAACGATTTCCCGAT+TGG + chr1_2:7386642-7386661 Msa0053000:CDS 45.0%
TGCTGATGCATGTTCCAATC+GGG - chr1_2:7386659-7386678 None:intergenic 45.0%
CTGCTGATGCATGTTCCAAT+CGG - chr1_2:7386660-7386679 None:intergenic 45.0%
! CCCAGTTGAAGTGTTTCACA+AGG - chr1_2:7386716-7386735 None:intergenic 45.0%
TATTGGACTGAGCCACAACA+AGG + chr1_2:7386762-7386781 Msa0053000:CDS 45.0%
ATTGGACTGAGCCACAACAA+GGG + chr1_2:7386763-7386782 Msa0053000:CDS 45.0%
TGGATGGAACTGTTCAGCAA+TGG + chr1_2:7386874-7386893 Msa0053000:CDS 45.0%
! AGTCTTCTGACTCGCTACAA+GGG + chr1_2:7386951-7386970 Msa0053000:CDS 45.0%
GGACACATAGATAGTCCAGT+TGG + chr1_2:7387221-7387240 Msa0053000:CDS 45.0%
TCAAGCGAAGAACAAACGAC+AGG - chr1_2:7387248-7387267 None:intergenic 45.0%
AGTTATGCTTAGGGAAGCCA+TGG + chr1_2:7387355-7387374 Msa0053000:CDS 45.0%
GGATAATGTTGTGGGGATTC+TGG + chr1_2:7387396-7387415 Msa0053000:CDS 45.0%
GAGTAGGGATAATGCGCATT+TGG + chr1_2:7387430-7387449 Msa0053000:CDS 45.0%
TGATAAAGGTGACTCCCCAA+TGG + chr1_2:7387634-7387653 Msa0053000:CDS 45.0%
TACTTCATGGCTATGAAGCC+CGG + chr1_2:7387809-7387828 Msa0053000:three_prime_UTR 45.0%
!!! AATATTTTTTGAATATTTTT+GGG - chr1_2:7382748-7382767 None:intergenic 5.0%
!!! TTTGTAATTTTAATTTTTAA+AGG + chr1_2:7383114-7383133 Msa0053000:intron 5.0%
CGTGACCCGTCTCATCAAAT+TGG + chr1_2:7383073-7383092 Msa0053000:intron 50.0%
GGTCTGCAACGGCTACATTA+AGG - chr1_2:7383207-7383226 None:intergenic 50.0%
TCGTCCAAAGCAGGTGATCA+AGG + chr1_2:7383699-7383718 Msa0053000:CDS 50.0%
TTGCCAGCATTCGTTTCGGT+CGG - chr1_2:7383766-7383785 None:intergenic 50.0%
GACCTTGCCAGCATTCGTTT+CGG - chr1_2:7383770-7383789 None:intergenic 50.0%
! TGGAGTATCCGACCTTTCTC+AGG + chr1_2:7383851-7383870 Msa0053000:CDS 50.0%
GAAGGGTAGCTGGGAAAAGT+TGG + chr1_2:7384046-7384065 Msa0053000:CDS 50.0%
GGTAGCTGGGAAAAGTTGGA+AGG + chr1_2:7384050-7384069 Msa0053000:CDS 50.0%
! CACTGTCGACTAAACCCGAT+CGG + chr1_2:7384081-7384100 Msa0053000:CDS 50.0%
! ACTGTCGACTAAACCCGATC+GGG + chr1_2:7384082-7384101 Msa0053000:CDS 50.0%
TATTTGGAAGGACCTGCTCC+TGG + chr1_2:7384113-7384132 Msa0053000:CDS 50.0%
AGCAAGTCAATTCCAGGAGC+AGG - chr1_2:7384128-7384147 None:intergenic 50.0%
! CCGATGTACGAGCTACTTTG+TGG + chr1_2:7384681-7384700 Msa0053000:CDS 50.0%
TGCAGGCAACCGATACAGAT+TGG + chr1_2:7385028-7385047 Msa0053000:CDS 50.0%
GCAGGCAACCGATACAGATT+GGG + chr1_2:7385029-7385048 Msa0053000:CDS 50.0%
CAGCGTCACCCAATCTGTAT+CGG - chr1_2:7385040-7385059 None:intergenic 50.0%
TGGATGAGGGGCCATTTAGA+AGG - chr1_2:7385074-7385093 None:intergenic 50.0%
AAATGGCCCCTCATCCAAAG+CGG + chr1_2:7385077-7385096 Msa0053000:CDS 50.0%
! AAAGGACCGCTTTGGATGAG+GGG - chr1_2:7385086-7385105 None:intergenic 50.0%
!! ACAAGAATGTCGGTGCCAGA+AGG - chr1_2:7385123-7385142 None:intergenic 50.0%
AAAAGTCCAACCTGTGCAGC+TGG - chr1_2:7385195-7385214 None:intergenic 50.0%
CAAGTATGTAGCGGCCACTT+AGG - chr1_2:7385913-7385932 None:intergenic 50.0%
GATCAATGGAGGACAAACCG+AGG + chr1_2:7386090-7386109 Msa0053000:CDS 50.0%
TAGCAGCTACCCTAACACCA+TGG + chr1_2:7386605-7386624 Msa0053000:CDS 50.0%
! ACACTGCATCTTCTGGGAAG+TGG + chr1_2:7386854-7386873 Msa0053000:CDS 50.0%
! TGCATCTTCTGGGAAGTGGA+TGG + chr1_2:7386858-7386877 Msa0053000:CDS 50.0%
CTTGTAGCGAGTCAGAAGAC+TGG - chr1_2:7386952-7386971 None:intergenic 50.0%
! CAGTCTTCTGACTCGCTACA+AGG + chr1_2:7386950-7386969 Msa0053000:CDS 50.0%
!! ATGTAGCGGACGGATCTAGT+TGG - chr1_2:7387079-7387098 None:intergenic 50.0%
CAAGAACAAGGTGCACCAGT+AGG + chr1_2:7387182-7387201 Msa0053000:CDS 50.0%
! GCGCATTTGGTGAATGCTGA+AGG + chr1_2:7387443-7387462 Msa0053000:CDS 50.0%
GAGTGGCTATCTCACAGTCA+TGG + chr1_2:7387509-7387528 Msa0053000:CDS 50.0%
TAAAGGTGACTCCCCAATGG+AGG + chr1_2:7387637-7387656 Msa0053000:CDS 50.0%
TCACCGACCGAAACGAATGC+TGG + chr1_2:7383760-7383779 Msa0053000:CDS 55.0%
GACCGAAACGAATGCTGGCA+AGG + chr1_2:7383765-7383784 Msa0053000:CDS 55.0%
TACAGATTGGGTGACGCTGC+AGG + chr1_2:7385041-7385060 Msa0053000:CDS 55.0%
ACAGATTGGGTGACGCTGCA+GGG + chr1_2:7385042-7385061 Msa0053000:CDS 55.0%
!! AGAATGTCGGTGCCAGAAGG+AGG - chr1_2:7385120-7385139 None:intergenic 55.0%
GTCTATCGAAACCGGGCCTA+GGG - chr1_2:7385403-7385422 None:intergenic 55.0%
TGTCTATCGAAACCGGGCCT+AGG - chr1_2:7385404-7385423 None:intergenic 55.0%
GGACCTCACGGAATCCTAAG+TGG + chr1_2:7385896-7385915 Msa0053000:CDS 55.0%
AACTTGGATGGGTCCTGCTC+AGG + chr1_2:7385949-7385968 Msa0053000:CDS 55.0%
TTCTCGGTGATCACCTGAGC+AGG - chr1_2:7385965-7385984 None:intergenic 55.0%
GTATCTGCTTGGGTCCGGAT+TGG + chr1_2:7386010-7386029 Msa0053000:CDS 55.0%
! CCACTGATTGTCAGCGCCAA+GGG - chr1_2:7386071-7386090 None:intergenic 55.0%
! TCCACTGATTGTCAGCGCCA+AGG - chr1_2:7386072-7386091 None:intergenic 55.0%
ACGCTTCCGAATCTGCAGTG+TGG - chr1_2:7386553-7386572 None:intergenic 55.0%
AGATGCAGTGTCCGCGAGTT+TGG - chr1_2:7386845-7386864 None:intergenic 55.0%
TCGCGGACACTGCATCTTCT+GGG + chr1_2:7386848-7386867 Msa0053000:CDS 55.0%
GAACAAGGTGCACCAGTAGG+TGG + chr1_2:7387185-7387204 Msa0053000:CDS 55.0%
GGTGCACCAGTAGGTGGAAT+TGG + chr1_2:7387191-7387210 Msa0053000:CDS 55.0%
GAACAAACGACAGGCCCAAC+TGG - chr1_2:7387239-7387258 None:intergenic 55.0%
TTCAACAGCAGGGTGAGCCA+TGG - chr1_2:7387375-7387394 None:intergenic 55.0%
ATGGCTCACCCTGCTGTTGA+AGG + chr1_2:7387374-7387393 Msa0053000:CDS 55.0%
TGGCTCACCCTGCTGTTGAA+GGG + chr1_2:7387375-7387394 Msa0053000:CDS 55.0%
AGACTGGGCACGACTCACAC+CGG + chr1_2:7383392-7383411 Msa0053000:intron 60.0%
! TGTGCAGCTGGTGGTGTCGA+AGG - chr1_2:7385183-7385202 None:intergenic 60.0%
TTCGACACCACCAGCTGCAC+AGG + chr1_2:7385182-7385201 Msa0053000:CDS 60.0%
ACACCACCAGCTGCACAGGT+TGG + chr1_2:7385186-7385205 Msa0053000:intron 60.0%
AGTCCAACCTGTGCAGCTGG+TGG - chr1_2:7385192-7385211 None:intergenic 60.0%
CTTAGCTGTTGCCCTAGGCC+CGG + chr1_2:7385389-7385408 Msa0053000:intron 60.0%
CGGCCACTTAGGATTCCGTG+AGG - chr1_2:7385902-7385921 None:intergenic 60.0%
!! GCTTGGGTCCGGATTGGTTC+TGG + chr1_2:7386016-7386035 Msa0053000:CDS 60.0%
!! CCCTTGGCGCTGACAATCAG+TGG + chr1_2:7386068-7386087 Msa0053000:CDS 60.0%
CTCGCGGACACTGCATCTTC+TGG + chr1_2:7386847-7386866 Msa0053000:CDS 60.0%
TGGACGTGTGCAGCGCAAGC+TGG + chr1_2:7384607-7384626 Msa0053000:CDS 65.0%
! GCAGCTGGTGGTGTCGAAGG+AGG - chr1_2:7385180-7385199 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 7382601 7387842 7382601 ID=Msa0053000;Name=Msa0053000
chr1_2 mRNA 7382601 7387842 7382601 ID=Msa0053000-mRNA-1;Parent=Msa0053000;Name=Msa0053000-mRNA-1;_AED=0.09;_eAED=0.09;_QI=309|1|1|1|0.83|0.71|7|166|930
chr1_2 exon 7382601 7382987 7382601 ID=Msa0053000-mRNA-1:exon:2478;Parent=Msa0053000-mRNA-1
chr1_2 exon 7383579 7383946 7383579 ID=Msa0053000-mRNA-1:exon:2479;Parent=Msa0053000-mRNA-1
chr1_2 exon 7384034 7384190 7384034 ID=Msa0053000-mRNA-1:exon:2480;Parent=Msa0053000-mRNA-1
chr1_2 exon 7384389 7384747 7384389 ID=Msa0053000-mRNA-1:exon:2481;Parent=Msa0053000-mRNA-1
chr1_2 exon 7385026 7385203 7385026 ID=Msa0053000-mRNA-1:exon:2482;Parent=Msa0053000-mRNA-1
chr1_2 exon 7385755 7386291 7385755 ID=Msa0053000-mRNA-1:exon:2483;Parent=Msa0053000-mRNA-1
chr1_2 exon 7386561 7387842 7386561 ID=Msa0053000-mRNA-1:exon:2484;Parent=Msa0053000-mRNA-1
chr1_2 five_prime_UTR 7382601 7382909 7382601 ID=Msa0053000-mRNA-1:five_prime_utr;Parent=Msa0053000-mRNA-1
chr1_2 CDS 7382910 7382987 7382910 ID=Msa0053000-mRNA-1:cds;Parent=Msa0053000-mRNA-1
chr1_2 CDS 7383579 7383946 7383579 ID=Msa0053000-mRNA-1:cds;Parent=Msa0053000-mRNA-1
chr1_2 CDS 7384034 7384190 7384034 ID=Msa0053000-mRNA-1:cds;Parent=Msa0053000-mRNA-1
chr1_2 CDS 7384389 7384747 7384389 ID=Msa0053000-mRNA-1:cds;Parent=Msa0053000-mRNA-1
chr1_2 CDS 7385026 7385203 7385026 ID=Msa0053000-mRNA-1:cds;Parent=Msa0053000-mRNA-1
chr1_2 CDS 7385755 7386291 7385755 ID=Msa0053000-mRNA-1:cds;Parent=Msa0053000-mRNA-1
chr1_2 CDS 7386561 7387676 7386561 ID=Msa0053000-mRNA-1:cds;Parent=Msa0053000-mRNA-1
chr1_2 three_prime_UTR 7387677 7387842 7387677 ID=Msa0053000-mRNA-1:three_prime_utr;Parent=Msa0053000-mRNA-1
Gene Sequence

>Msa0053000

ATGAAGAGGTTCTTCACAAGCTGTGTCTCAAAGTTTCACTCCCACTCGAAACATAAGAAATCTCACTCTCACTCTCAGATAATGGCAGGAAACATCTCTGGTCCAAGTGAGAGCAATGCTGCTAATATTTTGCTGAATCATGACTTCTCAAATGACCTGAACTCTTGGCATCTCAATTGCTGCAATGGCTATGTAATTTCGTCCAAAGCAGGTGATCAAGGTGTTAATTTGATGGATTCGGATTGTAATTATGCTGTTATCACCGACCGAAACGAATGCTGGCAAGGTCTTGAGCAAGATATCACAGACAGAATTTCCATTGGTTCTGCTTACACGGTTTCGGCTTTTGTTGGAGTATCCGACCTTTCTCAGGAATCTGCTGATGTGAAAGCTACACTGAAACTAGAATATCATGATTCAGCTACAAATTATTTGTTCATTGGAGGAACTTCTGTTATGAAGGGTAGCTGGGAAAAGTTGGAAGGAACATTTTCACTGTCGACTAAACCCGATCGGGTTGTATTTTATTTGGAAGGACCTGCTCCTGGAATTGACTTGCTTATAAGATCAGTAGAGATCAACTGTTCCATTCCAAATGACAACAAGTTCACAAGTACAGAAACATGTGTTTCTACTGGAGATGAAAGCATCATAATAAACCCACAATTTGAGGATGGCCTGAATAATTGGTCTGGAAGAAGCTGCAAGATTGTGTTGCATGATTCCATGGCAGATGGTAAAATTGTTCCAAAGTCTGGGAAATATTTTGCATGCGCAACAGAGCGAACACAATTCTGGAATGGAATTCAGCAGGAGATAACTGGACGTGTGCAGCGCAAGCTGGCCTATGAGATCACTGCTTTAGTTCGAATATATGGCAACAATGTCACTAATGCCGATGTACGAGCTACTTTGTGGGTTCAAACACCAGATCTCCGAGAGCAGTATATAGGCATTGCAAATGTGCAGGCAACCGATACAGATTGGGTGACGCTGCAGGGAAAATTCCTTCTAAATGGCCCCTCATCCAAAGCGGTCCTTTATTTAGAGGGACCTCCTTCTGGCACCGACATTCTTGTTAATACTTTGGTTGTAAAGCATGCTGCTAAAACACCTCCTTCGACACCACCAGCTGCACAGAATGTTGCTTTTGGAATTAATATAATTGAGAACAGCAATCTTTCTGATGATACAAAAGGATGGTTTCCACTTGGTAATTGCACTTTAACTGTTAAATCCGGTTCTCCTCATATACTTCCACCAATGGCAAGAGATTCTCTTGGACCTCACGGAATCCTAAGTGGCCGCTACATACTTGTAACTAATAGAACACAAACTTGGATGGGTCCTGCTCAGGTGATCACCGAGAAATTAAAGCTATTTTTGACTTATCAAGTATCTGCTTGGGTCCGGATTGGTTCTGGTTCAAATGGACCACAAAATGTGAATGTTGCCCTTGGCGCTGACAATCAGTGGATCAATGGAGGACAAACCGAGGTTTCAGATGATAGATGGCATGAAATTGGTGGATCCTTTAGAATTGAAAAGCAGCCAACAAAGATTATGGTTTATATTCAAGGTCCAGCTTCTGGTGTAGACTTAATGGTTGCCGGACTTCAAATTTTCCCTGTTGATAGACATGCAAGATTTAGATATTTAAAGATGCAGACAGACAAGATTCGGAAGCGTGATGTTGTCCTGAAATTCACGGGACTAGACTCTAGCAGCTACCCTAACACCATGGTGCAAGTTAGACAAACACAGAACGATTTCCCGATTGGAACATGCATCAGCAGATCAAACATTGACAATGAAGATTTTGTCAACTTCCTTGTGAAACACTTCAACTGGGCTGTGTTTGCAAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTGAATTACAAAGACGCCGATGATCTTTTAACCTTGTGTCAAAAGTACAAGATCCAAACTCGCGGACACTGCATCTTCTGGGAAGTGGATGGAACTGTTCAGCAATGGATTAAGTCACTGAATAAAAATGATTTGATGACGGCTGTTCAAAACCGATTAACCAGTCTTCTGACTCGCTACAAGGGTAAGTTTAGTCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAAGATAGATTAGGCAAAGATATAAGGGCAAACATGTTCAAGACTGCAAACCAACTAGATCCGTCCGCTACATTGTTTGTGAATGATTATCATATTGAAGATGGATGTGACACAAGATCGTGTCCAAATAAATACATTGAACACATTCTTGATTTGCAAGAACAAGGTGCACCAGTAGGTGGAATTGGAATTCAAGGACACATAGATAGTCCAGTTGGGCCTGTCGTTTGTTCTTCGCTTGATAAATTAGGTATTCTTGGTTTACCGATATGGTTTACAGAACTTGATGTGTCTTCTATGAATGAATATGTGAGAGGTGATGATCTTGAAGTTATGCTTAGGGAAGCCATGGCTCACCCTGCTGTTGAAGGGATAATGTTGTGGGGATTCTGGGAGTTGTTTATGAGTAGGGATAATGCGCATTTGGTGAATGCTGAAGGTGATATTAATGAAGCTGGAAAAAGGTTTCTAGCTTTGAAACAAGAGTGGCTATCTCACAGTCATGGTCATGTTGATGAACAAGGTCAATTCAACTTCAGAGGATTTTATGGAACATATAATGTGGAAATTGTGACACCATCAAAGAAAATTTCGAAGACATTCGTGCTTGATAAAGGTGACTCCCCAATGGAGGTGTCAATTGATTTATAA
Protein sequence

>Msa0053000

MKRFFTSCVSKFHSHSKHKKSHSHSQIMAGNISGPSESNAANILLNHDFSNDLNSWHLNCCNGYVISSKAGDQGVNLMDSDCNYAVITDRNECWQGLEQDITDRISIGSAYTVSAFVGVSDLSQESADVKATLKLEYHDSATNYLFIGGTSVMKGSWEKLEGTFSLSTKPDRVVFYLEGPAPGIDLLIRSVEINCSIPNDNKFTSTETCVSTGDESIIINPQFEDGLNNWSGRSCKIVLHDSMADGKIVPKSGKYFACATERTQFWNGIQQEITGRVQRKLAYEITALVRIYGNNVTNADVRATLWVQTPDLREQYIGIANVQATDTDWVTLQGKFLLNGPSSKAVLYLEGPPSGTDILVNTLVVKHAAKTPPSTPPAAQNVAFGINIIENSNLSDDTKGWFPLGNCTLTVKSGSPHILPPMARDSLGPHGILSGRYILVTNRTQTWMGPAQVITEKLKLFLTYQVSAWVRIGSGSNGPQNVNVALGADNQWINGGQTEVSDDRWHEIGGSFRIEKQPTKIMVYIQGPASGVDLMVAGLQIFPVDRHARFRYLKMQTDKIRKRDVVLKFTGLDSSSYPNTMVQVRQTQNDFPIGTCISRSNIDNEDFVNFLVKHFNWAVFANELKWYWTEPQQGNLNYKDADDLLTLCQKYKIQTRGHCIFWEVDGTVQQWIKSLNKNDLMTAVQNRLTSLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDPSATLFVNDYHIEDGCDTRSCPNKYIEHILDLQEQGAPVGGIGIQGHIDSPVGPVVCSSLDKLGILGLPIWFTELDVSSMNEYVRGDDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSHGHVDEQGQFNFRGFYGTYNVEIVTPSKKISKTFVLDKGDSPMEVSIDL*