AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017750 MtrunA17_Chr1g0151951 92.688 930 23 2 1 885 1 930 0.0 1737
Msa0017750 MtrunA17_Chr3g0135341 74.345 725 143 2 204 885 16 740 0.0 1145
Msa0017750 MtrunA17_Chr3g0135341 29.330 358 217 7 22 349 2 353 5.42e-33 137
Msa0017750 MtrunA17_Chr3g0145541 38.857 350 198 6 545 885 217 559 3.63e-74 253
Msa0017750 MtrunA17_Chr7g0223191 29.740 538 301 16 372 867 17 519 1.07e-59 213
Msa0017750 MtrunA17_Chr5g0421191 28.757 539 301 14 372 865 43 543 1.36e-57 207
Msa0017750 MtrunA17_Chr1g0207211 27.749 573 333 16 361 885 41 580 8.78e-57 206
Msa0017750 MtrunA17_Chr4g0037551 29.078 564 323 17 357 876 31 561 3.42e-56 204
Msa0017750 MtrunA17_Chr1g0207241 27.920 548 321 15 364 868 50 566 3.30e-53 195
Msa0017750 MtrunA17_Chr1g0207231 27.926 487 289 16 446 885 1 472 1.31e-51 188
Msa0017750 MtrunA17_Chr1g0207201 28.480 467 280 12 446 870 1 455 4.18e-50 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017750 AT1G58370.2 64.278 949 268 10 1 885 1 942 0.0 1233
Msa0017750 AT1G58370.1 66.261 904 249 7 31 885 18 914 0.0 1229
Msa0017750 AT1G58370.1 24.646 353 225 9 198 525 11 347 7.53e-26 115
Msa0017750 AT1G10050.3 57.701 896 316 11 40 885 213 1095 0.0 1048
Msa0017750 AT1G10050.3 34.231 520 287 12 42 530 37 532 4.53e-68 246
Msa0017750 AT1G10050.2 57.701 896 316 11 40 885 181 1063 0.0 1048
Msa0017750 AT1G10050.2 34.231 520 287 12 42 530 5 500 4.92e-68 246
Msa0017750 AT1G10050.1 57.701 896 316 11 40 885 181 1063 0.0 1048
Msa0017750 AT1G10050.1 34.231 520 287 12 42 530 5 500 4.92e-68 246
Msa0017750 AT4G08160.1 62.213 741 220 6 199 885 15 749 0.0 963
Msa0017750 AT4G08160.1 25.893 336 215 9 43 349 27 357 3.08e-25 112
Msa0017750 AT4G08160.2 62.096 649 186 6 199 793 15 657 0.0 832
Msa0017750 AT4G08160.2 25.893 336 215 9 43 349 27 357 2.24e-25 112
Msa0017750 AT4G38650.1 33.954 483 263 13 448 885 91 562 3.20e-75 256
Msa0017750 AT4G33830.1 26.874 547 333 13 372 879 47 565 2.48e-60 216
Msa0017750 AT4G38300.1 44.248 226 114 3 545 768 41 256 6.74e-58 200
Msa0017750 AT4G33860.1 27.190 548 317 17 372 872 46 558 3.10e-55 201
Msa0017750 AT4G33840.1 26.268 552 325 16 372 876 46 562 1.62e-54 199
Msa0017750 AT4G33810.1 29.058 499 277 19 433 873 33 512 2.97e-47 177
Msa0017750 AT4G33810.5 29.058 499 277 19 433 873 33 512 2.97e-47 177
Msa0017750 AT4G33810.2 29.058 499 277 19 433 873 73 552 7.84e-47 177
Msa0017750 AT4G33810.3 29.058 499 277 19 433 873 73 552 7.84e-47 177
Msa0017750 AT4G33810.4 29.058 499 277 19 433 873 73 552 7.84e-47 177
Msa0017750 AT4G33820.1 28.000 475 282 15 448 873 90 553 2.37e-45 172
Msa0017750 AT2G14690.1 31.111 360 220 11 537 873 199 553 4.77e-43 166

Find 233 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGTTCAATGTATTTATT+TGG 0.179825 1_1:-29660111 None:intergenic
GGATAATGTTGTGGGGATTC+TGG 0.188997 1_1:+29660358 Msa0017750:CDS
TGTTCTTCGCTTGATAAATT+AGG 0.196978 1_1:+29660216 Msa0017750:CDS
CTCGCGGACACTGCATCTTC+TGG 0.228113 1_1:+29659809 Msa0017750:CDS
CCAATTATCATTCAAAACTA+TGG 0.244044 1_1:-29655563 None:intergenic
CTTGATAAATTAGGTATTCT+TGG 0.245839 1_1:+29660225 Msa0017750:CDS
ACTGCTTTAGTTCGAATATA+TGG 0.257375 1_1:+29657427 Msa0017750:CDS
GGTAAAATTGTTCCAAAGTC+TGG 0.267756 1_1:+29657307 Msa0017750:CDS
GAAAATTTCCTTCCAAACTT+TGG 0.272084 1_1:-29655605 None:intergenic
GTATTCTTGGTTTACCGATA+TGG 0.275610 1_1:+29660238 Msa0017750:CDS
AAAGCAGCCAACAAAGATTA+TGG 0.278671 1_1:+29658945 Msa0017750:CDS
ATAGATTAGGCAAAGATATA+AGG 0.281339 1_1:+29659992 Msa0017750:CDS
TATTTAGAGGGACCTCCTTC+TGG 0.284245 1_1:+29657891 Msa0017750:CDS
TCCTTGTGAAACACTTCAAC+TGG 0.287746 1_1:+29659674 Msa0017750:CDS
TGGTTCTGCTTACACGGTTT+CGG 0.290637 1_1:+29656607 Msa0017750:CDS
TATATTCAAGGTCCAGCTTC+TGG 0.294775 1_1:+29658970 Msa0017750:CDS
GCTTGGGTCCGGATTGGTTC+TGG 0.294793 1_1:+29658802 Msa0017750:CDS
AAAATTTCCTTCCAAACTTT+GGG 0.295975 1_1:-29655604 None:intergenic
TTGAGGATGGCCTGAATAAT+TGG 0.299999 1_1:+29657239 Msa0017750:CDS
AGATGCAGTGTCCGCGAGTT+TGG 0.301967 1_1:-29659804 None:intergenic
CAGGGAAAATTCCTTCTAAA+TGG 0.303874 1_1:+29657846 Msa0017750:CDS
CAACAGAACGAACACAATTC+TGG 0.313115 1_1:+29657347 Msa0017750:CDS
ATTCATTTAATCCCAAAGTT+TGG 0.315287 1_1:+29655593 Msa0017750:five_prime_UTR
GCAAAATATTTCCCAGACTT+TGG 0.322421 1_1:-29657319 None:intergenic
GCTACAAATTATTTGTTCAT+TGG 0.326978 1_1:+29656707 Msa0017750:CDS
TTCTTCCAGACCAATTATTC+AGG 0.328653 1_1:-29657249 None:intergenic
ATATTAATGAAGCTGGAAAA+AGG 0.336260 1_1:+29660430 Msa0017750:CDS
AGCTTCTGGTGTAGACTTAA+TGG 0.340829 1_1:+29658984 Msa0017750:CDS
GATTAAATAGATTAATAAAT+CGG 0.346089 1_1:-29655397 None:intergenic
TATCTTTGCCTAATCTATCT+TGG 0.348489 1_1:-29659987 None:intergenic
CAAAGCGGTCCTTTATTTAG+AGG 0.352566 1_1:+29657878 Msa0017750:CDS
AATCTTGCATGTCTATCAAC+AGG 0.358717 1_1:-29659027 None:intergenic
AAGACATTCGTGCTTGATAA+AGG 0.359363 1_1:+29660582 Msa0017750:CDS
GTATGATATACGTTGTCATT+TGG 0.365712 1_1:-29656965 None:intergenic
GACTTATCAAGTATCTGCTT+GGG 0.366775 1_1:+29658786 Msa0017750:CDS
TACACCTTCATCACCTGCTT+TGG 0.371725 1_1:-29656489 None:intergenic
CGACATTCTTGTTAATACTT+TGG 0.374970 1_1:+29657917 Msa0017750:CDS
AAGATTATGGTTTATATTCA+AGG 0.377953 1_1:+29658958 Msa0017750:CDS
ATATAAACCATAATCTTTGT+TGG 0.377974 1_1:-29658952 None:intergenic
GATAATGTTGTGGGGATTCT+GGG 0.382110 1_1:+29660359 Msa0017750:CDS
GGTGTAGACTTAATGGTTGC+CGG 0.385838 1_1:+29658991 Msa0017750:CDS
GGTGCACCAGTAGGTGGAAT+TGG 0.386421 1_1:+29660153 Msa0017750:CDS
GGAATTCAGCAGGAGATAAC+TGG 0.386735 1_1:+29657373 Msa0017750:CDS
CAAATGAGTTGAAGTGGTAT+TGG 0.389711 1_1:+29659707 Msa0017750:CDS
CATAATAAACCCACAATTTG+AGG 0.389860 1_1:+29657222 Msa0017750:CDS
GATGATAGATGGCATGAAAT+TGG 0.390386 1_1:+29658904 Msa0017750:CDS
CTACAGAACTTCTGTTATGA+AGG 0.391792 1_1:+29656814 Msa0017750:intron
AGGTGTAAATTTGATGGATT+CGG 0.392974 1_1:+29656505 Msa0017750:CDS
GAACAAACGACAGGCCCAAC+TGG 0.393175 1_1:-29660198 None:intergenic
TGGATGAGGGGCCATTTAGA+AGG 0.400067 1_1:-29657857 None:intergenic
CTGGGAGTTGTTTATGAGTA+GGG 0.400841 1_1:+29660377 Msa0017750:CDS
AAGGAGGTCCCTCTAAATAA+AGG 0.403472 1_1:-29657887 None:intergenic
CGGATTGGTTCTGGTTCAAA+TGG 0.403976 1_1:+29658811 Msa0017750:CDS
CTTCTGTTATGAAGGGTAGC+TGG 0.404922 1_1:+29656822 Msa0017750:CDS
TGACTTATCAAGTATCTGCT+TGG 0.409021 1_1:+29658785 Msa0017750:CDS
ATGATCTTGAAGTTATGCTT+AGG 0.411794 1_1:+29660307 Msa0017750:CDS
GAAGGGTAGCTGGGAAAAGT+TGG 0.414542 1_1:+29656832 Msa0017750:CDS
GACCTTGCCAGCATTCGTTT+CGG 0.423092 1_1:-29656553 None:intergenic
ATCAAGTATCTGCTTGGGTC+CGG 0.425041 1_1:+29658791 Msa0017750:CDS
GAGTCAGAAGACTGGTTAAT+CGG 0.426105 1_1:-29659903 None:intergenic
GAGTAGGGATAATGCGCATT+TGG 0.427982 1_1:+29660392 Msa0017750:CDS
TGCACTTTAACTGTTAAATC+CGG 0.433057 1_1:+29658619 Msa0017750:CDS
AATTGAGATGCCAAGAGTTC+AGG 0.433547 1_1:-29656442 None:intergenic
TTTATTAATCTATTTAATCA+AGG 0.434121 1_1:+29655401 Msa0017750:five_prime_UTR
GAAGGTGATATTAATGAAGC+TGG 0.437237 1_1:+29660423 Msa0017750:CDS
TGATGAAGGTGTAAATTTGA+TGG 0.437364 1_1:+29656499 Msa0017750:CDS
TCTGGGAGTTGTTTATGAGT+AGG 0.438626 1_1:+29660376 Msa0017750:CDS
CCGAGGTTTCAGATGATAGA+TGG 0.439585 1_1:+29658893 Msa0017750:CDS
CTTATAAGCAAGTCAATTCC+AGG 0.441038 1_1:-29656917 None:intergenic
ATGGCTCACCCTGCTGTTGA+AGG 0.441932 1_1:+29660336 Msa0017750:CDS
TCGCGGACACTGCATCTTCT+GGG 0.447820 1_1:+29659810 Msa0017750:CDS
AACTTGGATGGGTCCTGCTC+AGG 0.448950 1_1:+29658735 Msa0017750:CDS
AAATAAAATACAACCCGATC+GGG 0.455406 1_1:-29656881 None:intergenic
AATCAATTGACACCTCCATT+GGG 0.455457 1_1:-29660611 None:intergenic
TAATTCAAATTCCCTTGTTG+TGG 0.456285 1_1:-29659736 None:intergenic
TAGATTAGGCAAAGATATAA+GGG 0.456329 1_1:+29659993 Msa0017750:CDS
TACAGATTGGGTGACGCTGC+AGG 0.458097 1_1:+29657827 Msa0017750:CDS
TATTTGGAAGGACCTGCTCC+TGG 0.458649 1_1:+29656899 Msa0017750:CDS
TGCAGGGAACCGATACAGAT+TGG 0.460115 1_1:+29657814 Msa0017750:CDS
TGGAGTATCCGACCTTTCTC+AGG 0.461041 1_1:+29656637 Msa0017750:CDS
CTCTAAATAAAGGACCGCTT+TGG 0.461695 1_1:-29657877 None:intergenic
TCAAGTTCTGTAAACCATAT+CGG 0.462220 1_1:-29660252 None:intergenic
TCAGGCCATCCTCAAATTGT+GGG 0.462609 1_1:-29657231 None:intergenic
ACAAATTATTTGTTCATTGG+AGG 0.463668 1_1:+29656710 Msa0017750:CDS
CAGTCTTCTGACTCGCTACA+AGG 0.465425 1_1:+29659912 Msa0017750:CDS
AACAGGGAAAATTTGAAGTC+CGG 0.469589 1_1:-29659010 None:intergenic
AAATCAATTGACACCTCCAT+TGG 0.470910 1_1:-29660612 None:intergenic
TCTCAAATGACCTGAACTCT+TGG 0.471487 1_1:+29656432 Msa0017750:CDS
GCCATTGGTGGAAGTATATG+AGG 0.473608 1_1:-29658646 None:intergenic
TAAAGGACCGCTTTGGATGA+GGG 0.474678 1_1:-29657870 None:intergenic
TTCTGTTATGAAGGGTAGCT+GGG 0.476279 1_1:+29656823 Msa0017750:CDS
TAATAGAACACAAACTTGGA+TGG 0.479975 1_1:+29658723 Msa0017750:CDS
AATCTTTCTGATGATACAAA+AGG 0.480154 1_1:+29658577 Msa0017750:CDS
TTCAGGCCATCCTCAAATTG+TGG 0.482816 1_1:-29657232 None:intergenic
AAAAGTCCAACCTGTGCAGC+TGG 0.483187 1_1:-29657978 None:intergenic
TGAATTCCAATTCCACCTAC+TGG 0.483936 1_1:-29660159 None:intergenic
ATAAAGGACCGCTTTGGATG+AGG 0.485822 1_1:-29657871 None:intergenic
ACAGAAACATGTGTTTCTAC+TGG 0.488657 1_1:+29657187 Msa0017750:CDS
TGGACGTGTGCAGCGCAAGC+TGG 0.489540 1_1:+29657393 Msa0017750:CDS
AACATTATCCCTTCAACAGC+AGG 0.489684 1_1:-29660345 None:intergenic
ACACAGAACGATTTCCCGAT+TGG 0.490031 1_1:+29659604 Msa0017750:intron
AGAGAATCTCTTGCCATTGG+TGG 0.492478 1_1:-29658658 None:intergenic
CCACTGATTGTCAGCGCCAA+GGG 0.492864 1_1:-29658854 None:intergenic
TAAGTAAAGATCAAAGGTAA+AGG 0.495001 1_1:-29655439 None:intergenic
TGGAAGTATATGAGGAGAAC+CGG 0.495790 1_1:-29658638 None:intergenic
GTATCTGCTTGGGTCCGGAT+TGG 0.496695 1_1:+29658796 Msa0017750:CDS
TGATCTTGAAGTTATGCTTA+GGG 0.496879 1_1:+29660308 Msa0017750:CDS
CAAGTATGTAGCGGCCACTT+AGG 0.497787 1_1:-29658696 None:intergenic
GTAGGTGGAATTGGAATTCA+AGG 0.497831 1_1:+29660162 Msa0017750:CDS
GTAAAATTGTTCCAAAGTCT+GGG 0.498320 1_1:+29657308 Msa0017750:CDS
ACACTGCATCTTCTGGGAAG+TGG 0.498790 1_1:+29659816 Msa0017750:CDS
TTCGACACCACCAGCTGCAC+AGG 0.498795 1_1:+29657968 Msa0017750:CDS
TGGCATCTCAATTGCTGCAA+TGG 0.499335 1_1:+29656452 Msa0017750:CDS
AGCAAGTCAATTCCAGGAGC+AGG 0.502349 1_1:-29656911 None:intergenic
CTGCTGATGCATGTTCCAAT+CGG 0.505222 1_1:-29659619 None:intergenic
TGCTGATGCATGTTCCAATC+GGG 0.506348 1_1:-29659618 None:intergenic
TTCCATTGGTTCTGCTTACA+CGG 0.506731 1_1:+29656601 Msa0017750:CDS
GAAATCTCACTCTCACTCTC+AGG 0.509622 1_1:+29655754 Msa0017750:CDS
CAAATTATTTGTTCATTGGA+GGG 0.512221 1_1:+29656711 Msa0017750:CDS
TCACCGACCGAAACGAATGC+TGG 0.517919 1_1:+29656546 Msa0017750:CDS
CGTTACTCGCAAATTTGAGT+GGG 0.518510 1_1:+29655654 Msa0017750:five_prime_UTR
ATATACGTTGTCATTTGGAA+TGG 0.520996 1_1:-29656960 None:intergenic
AATGATTATCATATTGAAGA+TGG 0.521478 1_1:+29660069 Msa0017750:CDS
CAATTATCATTCAAAACTAT+GGG 0.521910 1_1:-29655562 None:intergenic
GCAGGGAACCGATACAGATT+GGG 0.524439 1_1:+29657815 Msa0017750:CDS
ATTTAATCCCAAAGTTTGGA+AGG 0.524555 1_1:+29655597 Msa0017750:five_prime_UTR
GATGGCCTGAATAATTGGTC+TGG 0.525772 1_1:+29657244 Msa0017750:CDS
GCTGACAATCAGTGGATCAA+TGG 0.526079 1_1:+29658862 Msa0017750:CDS
TAACTAATAGAACACAAACT+TGG 0.526101 1_1:+29658719 Msa0017750:CDS
TTCTCGGTGATCACCTGAGC+AGG 0.526932 1_1:-29658748 None:intergenic
AAAGCGGTCCTTTATTTAGA+GGG 0.527863 1_1:+29657879 Msa0017750:CDS
CACTGTCGACTAAACCCGAT+CGG 0.527900 1_1:+29656867 Msa0017750:CDS
CATTTGAACCAGAACCAATC+CGG 0.530614 1_1:-29658810 None:intergenic
CAAATAAAATACAACCCGAT+CGG 0.533364 1_1:-29656882 None:intergenic
AACTAAAGCAGTGATCTCAT+AGG 0.538606 1_1:-29657416 None:intergenic
TTAGCAGCATTGCTCTCACT+TGG 0.539811 1_1:-29656389 None:intergenic
TCGTCCAAAGCAGGTGATGA+AGG 0.539823 1_1:+29656485 Msa0017750:CDS
CCATCTATCATCTGAAACCT+CGG 0.542182 1_1:-29658893 None:intergenic
ATAATGGCAGGAAACATCTC+TGG 0.543211 1_1:+29656365 Msa0017750:CDS
ACTGTCGACTAAACCCGATC+GGG 0.543731 1_1:+29656868 Msa0017750:CDS
AGAGATTCTCTTGGACCTCA+CGG 0.543735 1_1:+29658670 Msa0017750:CDS
CCAAGAGAATCTCTTGCCAT+TGG 0.545862 1_1:-29658661 None:intergenic
CATCAGCAGATTCCTGAGAA+AGG 0.546491 1_1:-29656649 None:intergenic
CAAGGTCAATTCAACTTCAG+AGG 0.546491 1_1:+29660507 Msa0017750:CDS
CCCTTGGCGCTGACAATCAG+TGG 0.546637 1_1:+29658854 Msa0017750:CDS
TATGTAATTTCGTCCAAAGC+AGG 0.547223 1_1:+29656476 Msa0017750:CDS
GATTGTGTTGCATGATTCCA+TGG 0.547938 1_1:+29657279 Msa0017750:CDS
ATCACAGACAGAATTTCCAT+TGG 0.553945 1_1:+29656587 Msa0017750:CDS
CAGCGTCACCCAATCTGTAT+CGG 0.554751 1_1:-29657823 None:intergenic
TGGTGTGTTCTAAAGTGTGC+AGG 0.554994 1_1:+29657797 Msa0017750:intron
ATTAAGTCTACACCAGAAGC+TGG 0.555364 1_1:-29658982 None:intergenic
ACAGATTGGGTGACGCTGCA+GGG 0.562053 1_1:+29657828 Msa0017750:CDS
ATTCTGGAATGGAATTCAGC+AGG 0.562599 1_1:+29657363 Msa0017750:CDS
GACACATAGATAGTCCAGTT+GGG 0.564049 1_1:+29660184 Msa0017750:CDS
TACTCGCAAATTTGAGTGGG+GGG 0.565337 1_1:+29655657 Msa0017750:five_prime_UTR
TGTTGAAGGGATAATGTTGT+GGG 0.565574 1_1:+29660350 Msa0017750:CDS
GAGATTTCTTATGTTTCGAG+TGG 0.565861 1_1:-29655739 None:intergenic
TATATAGTTAATGCATGAAG+AGG 0.566208 1_1:+29655684 Msa0017750:exon
AGATTTCTTATGTTTCGAGT+GGG 0.566960 1_1:-29655738 None:intergenic
TTCTAGCTTTGAAACAAGAG+TGG 0.568232 1_1:+29660454 Msa0017750:CDS
GAACGAACACAATTCTGGAA+TGG 0.568651 1_1:+29657352 Msa0017750:CDS
CTGTTGAAGGGATAATGTTG+TGG 0.569366 1_1:+29660349 Msa0017750:CDS
TGCATCTTCTGGGAAGTGGA+TGG 0.570497 1_1:+29659820 Msa0017750:CDS
CCCAGTTGAAGTGTTTCACA+AGG 0.574593 1_1:-29659675 None:intergenic
CATGGTCATGTTGATGAACA+AGG 0.575070 1_1:+29660489 Msa0017750:CDS
CAAAATGTGAATGTTGCCCT+TGG 0.576433 1_1:+29658838 Msa0017750:CDS
TCCACTGATTGTCAGCGCCA+AGG 0.576601 1_1:-29658855 None:intergenic
TACAGAACTTCTGTTATGAA+GGG 0.577471 1_1:+29656815 Msa0017750:intron
TTACTCGCAAATTTGAGTGG+GGG 0.579610 1_1:+29655656 Msa0017750:five_prime_UTR
AATAGAACACAAACTTGGAT+GGG 0.580771 1_1:+29658724 Msa0017750:CDS
GCGTTACTCGCAAATTTGAG+TGG 0.582694 1_1:+29655653 Msa0017750:five_prime_UTR
TTTCTGATGATACAAAAGGA+TGG 0.583068 1_1:+29658581 Msa0017750:CDS
GCGAAGTAAGTAAAGATCAA+AGG 0.583633 1_1:-29655445 None:intergenic
CCAATGGCAAGAGATTCTCT+TGG 0.584474 1_1:+29658661 Msa0017750:CDS
ATTCTTGATTTGCAAGAACA+AGG 0.585580 1_1:+29660132 Msa0017750:CDS
ACACAAGGTTAAAAGATCAT+CGG 0.586038 1_1:-29659767 None:intergenic
AGCAGATTCCTGAGAAAGGT+CGG 0.586373 1_1:-29656645 None:intergenic
TCCTCATATACTTCCACCAA+TGG 0.587699 1_1:+29658645 Msa0017750:CDS
ATGTAGCGGACGGATCTAGT+TGG 0.589460 1_1:-29660038 None:intergenic
ACAAAAGGATGGTTTCCACT+TGG 0.589690 1_1:+29658592 Msa0017750:CDS
TGGCTCACCCTGCTGTTGAA+GGG 0.590829 1_1:+29660337 Msa0017750:CDS
GACCGAAACGAATGCTGGCA+AGG 0.591612 1_1:+29656551 Msa0017750:CDS
AAAGGACCGCTTTGGATGAG+GGG 0.593030 1_1:-29657869 None:intergenic
CCTTGTGAAACACTTCAACT+GGG 0.594599 1_1:+29659675 Msa0017750:CDS
AGTTATGCTTAGGGAAGCCA+TGG 0.595340 1_1:+29660317 Msa0017750:CDS
ACAAGAATGTCGGTGCCAGA+AGG 0.599405 1_1:-29657906 None:intergenic
CCACAAAGTAGCTCGTACAT+CGG 0.600541 1_1:-29657467 None:intergenic
GGACACATAGATAGTCCAGT+TGG 0.600637 1_1:+29660183 Msa0017750:CDS
TTCAACAGCAGGGTGAGCCA+TGG 0.602273 1_1:-29660334 None:intergenic
AACCGTGTAAGCAGAACCAA+TGG 0.602847 1_1:-29656603 None:intergenic
TGATAAAGGTGACTCCCCAA+TGG 0.604356 1_1:+29660596 Msa0017750:CDS
TTGCCAGCATTCGTTTCGGT+CGG 0.605263 1_1:-29656549 None:intergenic
TGGATGGAACTGTTCAGCAA+TGG 0.607765 1_1:+29659836 Msa0017750:CDS
TATTGGACTGAGCCACAACA+AGG 0.608767 1_1:+29659724 Msa0017750:CDS
TGTGCAGCTGGTGGTGTCGA+AGG 0.611606 1_1:-29657966 None:intergenic
CAAAGTATTAACAAGAATGT+CGG 0.612075 1_1:-29657916 None:intergenic
ATAAACCCACAATTTGAGGA+TGG 0.616157 1_1:+29657226 Msa0017750:CDS
AGAATGTCGGTGCCAGAAGG+AGG 0.617068 1_1:-29657903 None:intergenic
GAACAAGGTGCACCAGTAGG+TGG 0.617864 1_1:+29660147 Msa0017750:CDS
GATAGATGGCATGAAATTGG+TGG 0.618322 1_1:+29658907 Msa0017750:CDS
TGTTTGCAAATGAGTTGAAG+TGG 0.620891 1_1:+29659701 Msa0017750:CDS
AATGCTTGAATTGAAATGAA+AGG 0.623937 1_1:-29655467 None:intergenic
GGACCTCACGGAATCCTAAG+TGG 0.625715 1_1:+29658682 Msa0017750:CDS
GTTACTCGCAAATTTGAGTG+GGG 0.627193 1_1:+29655655 Msa0017750:five_prime_UTR
CTTGTAGCGAGTCAGAAGAC+TGG 0.627289 1_1:-29659911 None:intergenic
TTCACAAACAATGTAGCGGA+CGG 0.628115 1_1:-29660048 None:intergenic
CAAGAACAAGGTGCACCAGT+AGG 0.631924 1_1:+29660144 Msa0017750:CDS
TCAAGCGAAGAACAAACGAC+AGG 0.636980 1_1:-29660207 None:intergenic
GAGTGGCTATCTCACAGTCA+TGG 0.637603 1_1:+29660471 Msa0017750:CDS
GACAATCAGTGGATCAATGG+AGG 0.638760 1_1:+29658865 Msa0017750:CDS
ATCATTCACAAACAATGTAG+CGG 0.639829 1_1:-29660052 None:intergenic
ATCAATTGACACCTCCATTG+GGG 0.643205 1_1:-29660610 None:intergenic
GTTAAAGTGCAATTACCAAG+TGG 0.647484 1_1:-29658607 None:intergenic
GCAGCTGGTGGTGTCGAAGG+AGG 0.648412 1_1:-29657963 None:intergenic
GCGCATTTGGTGAATGCAGA+AGG 0.652044 1_1:+29660405 Msa0017750:CDS
TTTAAAGATGCAGACAGACA+AGG 0.654021 1_1:+29659056 Msa0017750:CDS
GGTGTGTTCTAAAGTGTGCA+GGG 0.657239 1_1:+29657798 Msa0017750:intron
AGTCTTCTGACTCGCTACAA+GGG 0.658164 1_1:+29659913 Msa0017750:CDS
GGTAGCTGGGAAAAGTTGGA+AGG 0.662560 1_1:+29656836 Msa0017750:CDS
TTGCATGATTCCATGGCAGA+TGG 0.665285 1_1:+29657286 Msa0017750:CDS
TAAAGGTGACTCCCCAATGG+AGG 0.666453 1_1:+29660599 Msa0017750:CDS
TATTAGTTACAAGTATGTAG+CGG 0.676314 1_1:-29658705 None:intergenic
ATCTTGCATGTCTATCAACA+GGG 0.678115 1_1:-29659026 None:intergenic
GTTAACAATGAAATGCTGCA+TGG 0.679600 1_1:+29659955 Msa0017750:CDS
ACATTATCCCTTCAACAGCA+GGG 0.679952 1_1:-29660344 None:intergenic
TCTATGAATGAATATGTGAG+AGG 0.691709 1_1:+29660282 Msa0017750:CDS
AGTCCAACCTGTGCAGCTGG+TGG 0.701591 1_1:-29657975 None:intergenic
GTTGAAGGGATAATGTTGTG+GGG 0.711478 1_1:+29660351 Msa0017750:CDS
AAGTACAAGATCCAAACTCG+CGG 0.714282 1_1:+29659793 Msa0017750:CDS
GATCAATGGAGGACAAACCG+AGG 0.714432 1_1:+29658876 Msa0017750:CDS
ATTGGACTGAGCCACAACAA+GGG 0.716874 1_1:+29659725 Msa0017750:CDS
AAATGGCCCCTCATCCAAAG+CGG 0.728507 1_1:+29657863 Msa0017750:CDS
CGGCCACTTAGGATTCCGTG+AGG 0.735169 1_1:-29658685 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTAAATAGATTAATAAAT+CGG - chr1_1:29655400-29655419 None:intergenic 10.0%
!! TTTATTAATCTATTTAATCA+AGG + chr1_1:29655401-29655420 Msa0017750:five_prime_UTR 10.0%
!!! ATATTTTTTGAATATTTTTG+GGG - chr1_1:29655535-29655554 None:intergenic 10.0%
!!! GAATATTTTTTGAATATTTT+TGG - chr1_1:29655537-29655556 None:intergenic 10.0%
!! AAAATAAAATAAATTGTTAG+AGG - chr1_1:29658517-29658536 None:intergenic 10.0%
!!! TATTTTTTGAATATTTTTGG+GGG - chr1_1:29655534-29655553 None:intergenic 15.0%
!!! TCATTTTTTCAAATTATTAC+CGG - chr1_1:29656199-29656218 None:intergenic 15.0%
!! AACTAGATAAAAATAACAAA+AGG + chr1_1:29657687-29657706 Msa0017750:intron 15.0%
!! AAATTATCTGTAATTTACAT+TGG + chr1_1:29658004-29658023 Msa0017750:intron 15.0%
!!! ATTTTACATTCTTTATTGAT+AGG + chr1_1:29659133-29659152 Msa0017750:intron 15.0%
!!! ATTTTTTGAATATTTTTGGG+GGG - chr1_1:29655533-29655552 None:intergenic 20.0%
!! CAATTATCATTCAAAACTAT+GGG - chr1_1:29655565-29655584 None:intergenic 20.0%
!! AGAATCTTAAAAAATAACTG+AGG - chr1_1:29655799-29655818 None:intergenic 20.0%
!!! AAATTACAAAGTCTGAAATA+TGG - chr1_1:29655892-29655911 None:intergenic 20.0%
!!! TGTTTTTTTTTGACAGATAA+TGG + chr1_1:29656349-29656368 Msa0017750:intron 20.0%
!!! TCTATCTTTTAAAGAAATTG+AGG + chr1_1:29656761-29656780 Msa0017750:intron 20.0%
!! AATCTAAACCTTAACATTTA+TGG + chr1_1:29657757-29657776 Msa0017750:intron 20.0%
!! CTTGTCATATAAGTATTTAT+TGG + chr1_1:29658238-29658257 Msa0017750:intron 20.0%
!!! CAAAAATAGCTTTAATTTCT+CGG - chr1_1:29658767-29658786 None:intergenic 20.0%
!! ATATAAACCATAATCTTTGT+TGG - chr1_1:29658955-29658974 None:intergenic 20.0%
!! AAGATTATGGTTTATATTCA+AGG + chr1_1:29658958-29658977 Msa0017750:CDS 20.0%
!! CTAATATATTCTTTCTTCAT+TGG + chr1_1:29659236-29659255 Msa0017750:intron 20.0%
!! ATAGAAATACACATATCAAA+AGG - chr1_1:29659424-29659443 None:intergenic 20.0%
!! GAATAAAAATGATTTGATGA+CGG + chr1_1:29659870-29659889 Msa0017750:CDS 20.0%
!! AATGATTATCATATTGAAGA+TGG + chr1_1:29660069-29660088 Msa0017750:CDS 20.0%
!! ATGTGTTCAATGTATTTATT+TGG - chr1_1:29660114-29660133 None:intergenic 20.0%
!!! ATTTTATGGAACATATAATG+TGG + chr1_1:29660530-29660549 Msa0017750:CDS 20.0%
! TAAGTAAAGATCAAAGGTAA+AGG - chr1_1:29655442-29655461 None:intergenic 25.0%
! AATGCTTGAATTGAAATGAA+AGG - chr1_1:29655470-29655489 None:intergenic 25.0%
!!! TTTTTTGAATATTTTTGGGG+GGG - chr1_1:29655532-29655551 None:intergenic 25.0%
! CCAATTATCATTCAAAACTA+TGG - chr1_1:29655566-29655585 None:intergenic 25.0%
!!! CCATAGTTTTGAATGATAAT+TGG + chr1_1:29655563-29655582 Msa0017750:five_prime_UTR 25.0%
! ATTCATTTAATCCCAAAGTT+TGG + chr1_1:29655593-29655612 Msa0017750:five_prime_UTR 25.0%
! AAAATTTCCTTCCAAACTTT+GGG - chr1_1:29655607-29655626 None:intergenic 25.0%
! TATATAGTTAATGCATGAAG+AGG + chr1_1:29655684-29655703 Msa0017750:exon 25.0%
! TCTTAAAAAATAACTGAGGA+GGG - chr1_1:29655795-29655814 None:intergenic 25.0%
! ATCTTAAAAAATAACTGAGG+AGG - chr1_1:29655796-29655815 None:intergenic 25.0%
! ATGTGATGTATAATGCTTAA+TGG + chr1_1:29656065-29656084 Msa0017750:intron 25.0%
! TAAGGAAAATAGTTTCTTCT+TGG + chr1_1:29656300-29656319 Msa0017750:intron 25.0%
! GCTACAAATTATTTGTTCAT+TGG + chr1_1:29656707-29656726 Msa0017750:CDS 25.0%
! ACAAATTATTTGTTCATTGG+AGG + chr1_1:29656710-29656729 Msa0017750:CDS 25.0%
! CAAATTATTTGTTCATTGGA+GGG + chr1_1:29656711-29656730 Msa0017750:CDS 25.0%
! AAATAATGGTGAACATGTAA+GGG - chr1_1:29656793-29656812 None:intergenic 25.0%
! AAAATAATGGTGAACATGTA+AGG - chr1_1:29656794-29656813 None:intergenic 25.0%
! AGAAGTTCTGTAGAAAATAA+TGG - chr1_1:29656807-29656826 None:intergenic 25.0%
!!! CAGATACTGTTATTTCTTTA+TGG + chr1_1:29657004-29657023 Msa0017750:intron 25.0%
! TCTTTATGGAATTCTACATA+TGG + chr1_1:29657018-29657037 Msa0017750:intron 25.0%
! TTAAAGAGTGAAACCATAAT+AGG - chr1_1:29657091-29657110 None:intergenic 25.0%
!!! TGTTTTAATAACACACTAAC+TGG + chr1_1:29657129-29657148 Msa0017750:intron 25.0%
!! AAGAGTCAATCTAAAATTCA+TGG - chr1_1:29657634-29657653 None:intergenic 25.0%
! AACAACTACCATAAATGTTA+AGG - chr1_1:29657768-29657787 None:intergenic 25.0%
!! CAAAGTATTAACAAGAATGT+CGG - chr1_1:29657919-29657938 None:intergenic 25.0%
! AATAAGCTAAAAACAGCTTA+TGG + chr1_1:29658354-29658373 Msa0017750:intron 25.0%
!!! TAAAAACTTGTTAGACTGTT+TGG - chr1_1:29658410-29658429 None:intergenic 25.0%
! CAATATGAATCTGTTTGAAT+TGG - chr1_1:29658457-29658476 None:intergenic 25.0%
! AACAGATTCATATTGAACTT+CGG + chr1_1:29658462-29658481 Msa0017750:intron 25.0%
!!! ATTTTACAGAATGTTGCTTT+TGG + chr1_1:29658532-29658551 Msa0017750:intron 25.0%
! AATCTTTCTGATGATACAAA+AGG + chr1_1:29658577-29658596 Msa0017750:CDS 25.0%
! TATTAGTTACAAGTATGTAG+CGG - chr1_1:29658708-29658727 None:intergenic 25.0%
! TAACTAATAGAACACAAACT+TGG + chr1_1:29658719-29658738 Msa0017750:CDS 25.0%
! TATATTCTTTCTTCATTGGT+AGG + chr1_1:29659240-29659259 Msa0017750:intron 25.0%
! AATGCAAAATTGCTCTATTT+AGG - chr1_1:29659360-29659379 None:intergenic 25.0%
!! TAAATAGAGCAATTTTGCAT+TGG + chr1_1:29659359-29659378 Msa0017750:intron 25.0%
!! TCATTTTACCAAGATAGATT+AGG + chr1_1:29659979-29659998 Msa0017750:CDS 25.0%
! ATAGATTAGGCAAAGATATA+AGG + chr1_1:29659992-29660011 Msa0017750:CDS 25.0%
! TAGATTAGGCAAAGATATAA+GGG + chr1_1:29659993-29660012 Msa0017750:CDS 25.0%
! CTTGATAAATTAGGTATTCT+TGG + chr1_1:29660225-29660244 Msa0017750:CDS 25.0%
! ATATTAATGAAGCTGGAAAA+AGG + chr1_1:29660430-29660449 Msa0017750:CDS 25.0%
ATTTAATCCCAAAGTTTGGA+AGG + chr1_1:29655597-29655616 Msa0017750:five_prime_UTR 30.0%
GAAAATTTCCTTCCAAACTT+TGG - chr1_1:29655608-29655627 None:intergenic 30.0%
! AAGTTTGGAAGGAAATTTTC+TGG + chr1_1:29655608-29655627 Msa0017750:five_prime_UTR 30.0%
AGTAACGCCTAAGAAAAATT+GGG - chr1_1:29655641-29655660 None:intergenic 30.0%
! AGATTTCTTATGTTTCGAGT+GGG - chr1_1:29655741-29655760 None:intergenic 30.0%
!! TACAGTGAAGCTTTAAAAAC+AGG - chr1_1:29656015-29656034 None:intergenic 30.0%
TAGTGCTTCATAGATTAACA+CGG - chr1_1:29656142-29656161 None:intergenic 30.0%
AAAAAATGAAAGCGACTGAA+TGG + chr1_1:29656210-29656229 Msa0017750:intron 30.0%
!!! TTTTTTTGACAGATAATGGC+AGG + chr1_1:29656353-29656372 Msa0017750:intron 30.0%
! TGATGAAGGTGTAAATTTGA+TGG + chr1_1:29656499-29656518 Msa0017750:CDS 30.0%
!! AGGTGTAAATTTGATGGATT+CGG + chr1_1:29656505-29656524 Msa0017750:CDS 30.0%
TACAGAACTTCTGTTATGAA+GGG + chr1_1:29656815-29656834 Msa0017750:intron 30.0%
AAATAAAATACAACCCGATC+GGG - chr1_1:29656884-29656903 None:intergenic 30.0%
CAAATAAAATACAACCCGAT+CGG - chr1_1:29656885-29656904 None:intergenic 30.0%
! ATATACGTTGTCATTTGGAA+TGG - chr1_1:29656963-29656982 None:intergenic 30.0%
GTATGATATACGTTGTCATT+TGG - chr1_1:29656968-29656987 None:intergenic 30.0%
AACTTGTATTGAGCCTATTA+TGG + chr1_1:29657075-29657094 Msa0017750:intron 30.0%
!! ACTTCTGAAATATGACGAAA+AGG - chr1_1:29657159-29657178 None:intergenic 30.0%
CATAATAAACCCACAATTTG+AGG + chr1_1:29657222-29657241 Msa0017750:CDS 30.0%
GTAAAATTGTTCCAAAGTCT+GGG + chr1_1:29657308-29657327 Msa0017750:CDS 30.0%
! ACTGCTTTAGTTCGAATATA+TGG + chr1_1:29657427-29657446 Msa0017750:CDS 30.0%
!! GAATTTTAGATTGACTCTTG+AGG + chr1_1:29657635-29657654 Msa0017750:intron 30.0%
CGACATTCTTGTTAATACTT+TGG + chr1_1:29657917-29657936 Msa0017750:CDS 30.0%
GTAGATTGATATGAGCTTAT+AGG - chr1_1:29658087-29658106 None:intergenic 30.0%
TCGTGCAAAACAAAAAAGTT+AGG - chr1_1:29658141-29658160 None:intergenic 30.0%
! ATTAAGTTGTCTATCGAAAC+CGG - chr1_1:29658197-29658216 None:intergenic 30.0%
TTTCTGATGATACAAAAGGA+TGG + chr1_1:29658581-29658600 Msa0017750:CDS 30.0%
TGCACTTTAACTGTTAAATC+CGG + chr1_1:29658619-29658638 Msa0017750:CDS 30.0%
TAATAGAACACAAACTTGGA+TGG + chr1_1:29658723-29658742 Msa0017750:CDS 30.0%
AATAGAACACAAACTTGGAT+GGG + chr1_1:29658724-29658743 Msa0017750:CDS 30.0%
TAATTCAAATTCCCTTGTTG+TGG - chr1_1:29659739-29659758 None:intergenic 30.0%
ACACAAGGTTAAAAGATCAT+CGG - chr1_1:29659770-29659789 None:intergenic 30.0%
TATCTTTGCCTAATCTATCT+TGG - chr1_1:29659990-29660009 None:intergenic 30.0%
ATCATTCACAAACAATGTAG+CGG - chr1_1:29660055-29660074 None:intergenic 30.0%
!! ATTCTTGATTTGCAAGAACA+AGG + chr1_1:29660132-29660151 Msa0017750:CDS 30.0%
TGTTCTTCGCTTGATAAATT+AGG + chr1_1:29660216-29660235 Msa0017750:CDS 30.0%
TCAAGTTCTGTAAACCATAT+CGG - chr1_1:29660255-29660274 None:intergenic 30.0%
TCTATGAATGAATATGTGAG+AGG + chr1_1:29660282-29660301 Msa0017750:CDS 30.0%
ATGATCTTGAAGTTATGCTT+AGG + chr1_1:29660307-29660326 Msa0017750:CDS 30.0%
TGATCTTGAAGTTATGCTTA+GGG + chr1_1:29660308-29660327 Msa0017750:CDS 30.0%
! TTCAACTTCAGAGGATTTTA+TGG + chr1_1:29660516-29660535 Msa0017750:CDS 30.0%
! GTCTTCGAAATTTTCTTTGA+TGG - chr1_1:29660567-29660586 None:intergenic 30.0%
GCGAAGTAAGTAAAGATCAA+AGG - chr1_1:29655448-29655467 None:intergenic 35.0%
!! TTGGAAGGAAATTTTCTGGT+TGG + chr1_1:29655612-29655631 Msa0017750:five_prime_UTR 35.0%
! TTGGTCACCCAATTTTTCTT+AGG + chr1_1:29655631-29655650 Msa0017750:five_prime_UTR 35.0%
GAGTAACGCCTAAGAAAAAT+TGG - chr1_1:29655642-29655661 None:intergenic 35.0%
GAGATTTCTTATGTTTCGAG+TGG - chr1_1:29655742-29655761 None:intergenic 35.0%
ATCATCCAATTTGATGAGAC+GGG - chr1_1:29655869-29655888 None:intergenic 35.0%
GATCATCCAATTTGATGAGA+CGG - chr1_1:29655870-29655889 None:intergenic 35.0%
!! GCTTTAAAAACAGGTCTGAA+CGG - chr1_1:29656006-29656025 None:intergenic 35.0%
AACACAGATATAGATGAGAC+TGG + chr1_1:29656161-29656180 Msa0017750:intron 35.0%
ACACAGATATAGATGAGACT+GGG + chr1_1:29656162-29656181 Msa0017750:intron 35.0%
GCATCAACACTTCATATTGA+AGG - chr1_1:29656248-29656267 None:intergenic 35.0%
ACACACACACTAAACACTTA+AGG + chr1_1:29656282-29656301 Msa0017750:intron 35.0%
TATGTAATTTCGTCCAAAGC+AGG + chr1_1:29656476-29656495 Msa0017750:CDS 35.0%
ATCACAGACAGAATTTCCAT+TGG + chr1_1:29656587-29656606 Msa0017750:CDS 35.0%
CTACAGAACTTCTGTTATGA+AGG + chr1_1:29656814-29656833 Msa0017750:intron 35.0%
!! CGATCGGGTTGTATTTTATT+TGG + chr1_1:29656883-29656902 Msa0017750:CDS 35.0%
!! CGGGTTGTATTTTATTTGGA+AGG + chr1_1:29656887-29656906 Msa0017750:CDS 35.0%
CTTATAAGCAAGTCAATTCC+AGG - chr1_1:29656920-29656939 None:intergenic 35.0%
! ACAGAAACATGTGTTTCTAC+TGG + chr1_1:29657187-29657206 Msa0017750:CDS 35.0%
ATAAACCCACAATTTGAGGA+TGG + chr1_1:29657226-29657245 Msa0017750:CDS 35.0%
TTCTTCCAGACCAATTATTC+AGG - chr1_1:29657252-29657271 None:intergenic 35.0%
! AACAATTTTACCATCTGCCA+TGG - chr1_1:29657299-29657318 None:intergenic 35.0%
GGTAAAATTGTTCCAAAGTC+TGG + chr1_1:29657307-29657326 Msa0017750:CDS 35.0%
GCAAAATATTTCCCAGACTT+TGG - chr1_1:29657322-29657341 None:intergenic 35.0%
AACTAAAGCAGTGATCTCAT+AGG - chr1_1:29657419-29657438 None:intergenic 35.0%
CAGGGAAAATTCCTTCTAAA+TGG + chr1_1:29657846-29657865 Msa0017750:CDS 35.0%
! AAAGCGGTCCTTTATTTAGA+GGG + chr1_1:29657879-29657898 Msa0017750:CDS 35.0%
! GGTTCGAGTATATTTTACGT+TGG - chr1_1:29658066-29658085 None:intergenic 35.0%
!!! TTTTTGTTTTGCACGAGCAT+TGG + chr1_1:29658145-29658164 Msa0017750:intron 35.0%
! TTAAGTTGTCTATCGAAACC+GGG - chr1_1:29658196-29658215 None:intergenic 35.0%
! GCTGTTTCAATATGCTATCT+TGG + chr1_1:29658319-29658338 Msa0017750:intron 35.0%
GTTAAAGTGCAATTACCAAG+TGG - chr1_1:29658610-29658629 None:intergenic 35.0%
TGACTTATCAAGTATCTGCT+TGG + chr1_1:29658785-29658804 Msa0017750:CDS 35.0%
GACTTATCAAGTATCTGCTT+GGG + chr1_1:29658786-29658805 Msa0017750:CDS 35.0%
GATGATAGATGGCATGAAAT+TGG + chr1_1:29658904-29658923 Msa0017750:CDS 35.0%
!!! TGGCTGCTTTTCAATTCTAA+AGG - chr1_1:29658935-29658954 None:intergenic 35.0%
AAAGCAGCCAACAAAGATTA+TGG + chr1_1:29658945-29658964 Msa0017750:CDS 35.0%
! AACAGGGAAAATTTGAAGTC+CGG - chr1_1:29659013-29659032 None:intergenic 35.0%
ATCTTGCATGTCTATCAACA+GGG - chr1_1:29659029-29659048 None:intergenic 35.0%
AATCTTGCATGTCTATCAAC+AGG - chr1_1:29659030-29659049 None:intergenic 35.0%
TTTAAAGATGCAGACAGACA+AGG + chr1_1:29659056-29659075 Msa0017750:CDS 35.0%
TATCTTAACATGTGCCTTGA+GGG + chr1_1:29659450-29659469 Msa0017750:intron 35.0%
TGATGTTGTCCTGAAATTCA+CGG + chr1_1:29659534-29659553 Msa0017750:intron 35.0%
!! TGTTTGTTTAACTTGCACCA+TGG - chr1_1:29659587-29659606 None:intergenic 35.0%
! TGTTTGCAAATGAGTTGAAG+TGG + chr1_1:29659701-29659720 Msa0017750:CDS 35.0%
! CAAATGAGTTGAAGTGGTAT+TGG + chr1_1:29659707-29659726 Msa0017750:CDS 35.0%
! GATCTTGTACTTTTGACACA+AGG - chr1_1:29659785-29659804 None:intergenic 35.0%
GTTAACAATGAAATGCTGCA+TGG + chr1_1:29659955-29659974 Msa0017750:CDS 35.0%
GTATTCTTGGTTTACCGATA+TGG + chr1_1:29660238-29660257 Msa0017750:CDS 35.0%
TGTTGAAGGGATAATGTTGT+GGG + chr1_1:29660350-29660369 Msa0017750:CDS 35.0%
GAAGGTGATATTAATGAAGC+TGG + chr1_1:29660423-29660442 Msa0017750:CDS 35.0%
!! TTCTAGCTTTGAAACAAGAG+TGG + chr1_1:29660454-29660473 Msa0017750:CDS 35.0%
AAGACATTCGTGCTTGATAA+AGG + chr1_1:29660582-29660601 Msa0017750:CDS 35.0%
AATCAATTGACACCTCCATT+GGG - chr1_1:29660614-29660633 None:intergenic 35.0%
AAATCAATTGACACCTCCAT+TGG - chr1_1:29660615-29660634 None:intergenic 35.0%
!!! TTTTGCTTTGGCTTGCAGAT+TGG - chr1_1:29655494-29655513 None:intergenic 40.0%
!!! TGAATATTTTTGGGGGGGTT+GGG - chr1_1:29655527-29655546 None:intergenic 40.0%
!!! TTGAATATTTTTGGGGGGGT+TGG - chr1_1:29655528-29655547 None:intergenic 40.0%
CGTTACTCGCAAATTTGAGT+GGG + chr1_1:29655654-29655673 Msa0017750:five_prime_UTR 40.0%
GTTACTCGCAAATTTGAGTG+GGG + chr1_1:29655655-29655674 Msa0017750:five_prime_UTR 40.0%
TTACTCGCAAATTTGAGTGG+GGG + chr1_1:29655656-29655675 Msa0017750:five_prime_UTR 40.0%
CTGAGGAGGGTAAAAAAGTA+AGG - chr1_1:29655782-29655801 None:intergenic 40.0%
TAGACCGTCCAATCTTTGAT+AGG + chr1_1:29655935-29655954 Msa0017750:intron 40.0%
! CTTCATATTGAAGGCGTGTT+CGG - chr1_1:29656239-29656258 None:intergenic 40.0%
ATAATGGCAGGAAACATCTC+TGG + chr1_1:29656365-29656384 Msa0017750:CDS 40.0%
TCTCAAATGACCTGAACTCT+TGG + chr1_1:29656432-29656451 Msa0017750:CDS 40.0%
AATTGAGATGCCAAGAGTTC+AGG - chr1_1:29656445-29656464 None:intergenic 40.0%
!! TTCCATTGGTTCTGCTTACA+CGG + chr1_1:29656601-29656620 Msa0017750:CDS 40.0%
TTCTGTTATGAAGGGTAGCT+GGG + chr1_1:29656823-29656842 Msa0017750:CDS 40.0%
TTGAGGATGGCCTGAATAAT+TGG + chr1_1:29657239-29657258 Msa0017750:CDS 40.0%
GATTGTGTTGCATGATTCCA+TGG + chr1_1:29657279-29657298 Msa0017750:CDS 40.0%
CAACAGAACGAACACAATTC+TGG + chr1_1:29657347-29657366 Msa0017750:CDS 40.0%
! GAACGAACACAATTCTGGAA+TGG + chr1_1:29657352-29657371 Msa0017750:CDS 40.0%
!! ATTCTGGAATGGAATTCAGC+AGG + chr1_1:29657363-29657382 Msa0017750:CDS 40.0%
CAATGCCTATATACTGCTCT+CGG - chr1_1:29657510-29657529 None:intergenic 40.0%
TCGCTAATGCAGAAAACTCA+TGG - chr1_1:29657736-29657755 None:intergenic 40.0%
TGGTAGTTGTTGAACAATGC+TGG + chr1_1:29657777-29657796 Msa0017750:intron 40.0%
CTCTAAATAAAGGACCGCTT+TGG - chr1_1:29657880-29657899 None:intergenic 40.0%
! CAAAGCGGTCCTTTATTTAG+AGG + chr1_1:29657878-29657897 Msa0017750:CDS 40.0%
AAGGAGGTCCCTCTAAATAA+AGG - chr1_1:29657890-29657909 None:intergenic 40.0%
GACTGTTTGGAAGAGCTAAT+GGG - chr1_1:29658397-29658416 None:intergenic 40.0%
AGACTGTTTGGAAGAGCTAA+TGG - chr1_1:29658398-29658417 None:intergenic 40.0%
ACAAAAGGATGGTTTCCACT+TGG + chr1_1:29658592-29658611 Msa0017750:CDS 40.0%
! TGGAAGTATATGAGGAGAAC+CGG - chr1_1:29658641-29658660 None:intergenic 40.0%
TCCTCATATACTTCCACCAA+TGG + chr1_1:29658645-29658664 Msa0017750:CDS 40.0%
CATTTGAACCAGAACCAATC+CGG - chr1_1:29658813-29658832 None:intergenic 40.0%
! AGGGCAACATTCACATTTTG+TGG - chr1_1:29658838-29658857 None:intergenic 40.0%
CAAAATGTGAATGTTGCCCT+TGG + chr1_1:29658838-29658857 Msa0017750:CDS 40.0%
! CCATCTATCATCTGAAACCT+CGG - chr1_1:29658896-29658915 None:intergenic 40.0%
GATAGATGGCATGAAATTGG+TGG + chr1_1:29658907-29658926 Msa0017750:CDS 40.0%
TATATTCAAGGTCCAGCTTC+TGG + chr1_1:29658970-29658989 Msa0017750:CDS 40.0%
ATTAAGTCTACACCAGAAGC+TGG - chr1_1:29658985-29659004 None:intergenic 40.0%
AGCTTCTGGTGTAGACTTAA+TGG + chr1_1:29658984-29659003 Msa0017750:CDS 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG + chr1_1:29659319-29659338 Msa0017750:intron 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG + chr1_1:29659320-29659339 Msa0017750:intron 40.0%
TTGCTTAACATGTGCCCTAA+GGG - chr1_1:29659337-29659356 None:intergenic 40.0%
GTATCTTAACATGTGCCTTG+AGG + chr1_1:29659449-29659468 Msa0017750:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr1_1:29659467-29659486 None:intergenic 40.0%
! GTTTTTCCACACTGCAGATT+CGG + chr1_1:29659506-29659525 Msa0017750:intron 40.0%
GATGTTGTCCTGAAATTCAC+GGG + chr1_1:29659535-29659554 Msa0017750:intron 40.0%
! TAACTTGCACCATGGTGTTA+GGG - chr1_1:29659579-29659598 None:intergenic 40.0%
!! TTAACTTGCACCATGGTGTT+AGG - chr1_1:29659580-29659599 None:intergenic 40.0%
TCCTTGTGAAACACTTCAAC+TGG + chr1_1:29659674-29659693 Msa0017750:CDS 40.0%
CCTTGTGAAACACTTCAACT+GGG + chr1_1:29659675-29659694 Msa0017750:CDS 40.0%
AAGTACAAGATCCAAACTCG+CGG + chr1_1:29659793-29659812 Msa0017750:CDS 40.0%
! GAGTCAGAAGACTGGTTAAT+CGG - chr1_1:29659906-29659925 None:intergenic 40.0%
! TTCACAAACAATGTAGCGGA+CGG - chr1_1:29660051-29660070 None:intergenic 40.0%
TGAATTCCAATTCCACCTAC+TGG - chr1_1:29660162-29660181 None:intergenic 40.0%
GTAGGTGGAATTGGAATTCA+AGG + chr1_1:29660162-29660181 Msa0017750:CDS 40.0%
GACACATAGATAGTCCAGTT+GGG + chr1_1:29660184-29660203 Msa0017750:CDS 40.0%
ACATTATCCCTTCAACAGCA+GGG - chr1_1:29660347-29660366 None:intergenic 40.0%
AACATTATCCCTTCAACAGC+AGG - chr1_1:29660348-29660367 None:intergenic 40.0%
CTGTTGAAGGGATAATGTTG+TGG + chr1_1:29660349-29660368 Msa0017750:CDS 40.0%
GTTGAAGGGATAATGTTGTG+GGG + chr1_1:29660351-29660370 Msa0017750:CDS 40.0%
GATAATGTTGTGGGGATTCT+GGG + chr1_1:29660359-29660378 Msa0017750:CDS 40.0%
TCTGGGAGTTGTTTATGAGT+AGG + chr1_1:29660376-29660395 Msa0017750:CDS 40.0%
CTGGGAGTTGTTTATGAGTA+GGG + chr1_1:29660377-29660396 Msa0017750:CDS 40.0%
! CATGGTCATGTTGATGAACA+AGG + chr1_1:29660489-29660508 Msa0017750:CDS 40.0%
CAAGGTCAATTCAACTTCAG+AGG + chr1_1:29660507-29660526 Msa0017750:CDS 40.0%
ATCAATTGACACCTCCATTG+GGG - chr1_1:29660613-29660632 None:intergenic 40.0%
!! GGTCTCTGTGCTTTTTGCTT+TGG - chr1_1:29655506-29655525 None:intergenic 45.0%
GCGTTACTCGCAAATTTGAG+TGG + chr1_1:29655653-29655672 Msa0017750:five_prime_UTR 45.0%
TACTCGCAAATTTGAGTGGG+GGG + chr1_1:29655657-29655676 Msa0017750:five_prime_UTR 45.0%
GAAATCTCACTCTCACTCTC+AGG + chr1_1:29655754-29655773 Msa0017750:CDS 45.0%
CCGTCCTATCAAAGATTGGA+CGG - chr1_1:29655942-29655961 None:intergenic 45.0%
CCGTCCAATCTTTGATAGGA+CGG + chr1_1:29655939-29655958 Msa0017750:intron 45.0%
GTGACCGTCCTATCAAAGAT+TGG - chr1_1:29655946-29655965 None:intergenic 45.0%
AGGTCTGAACGGCTACATTA+AGG - chr1_1:29655995-29656014 None:intergenic 45.0%
TTAGCAGCATTGCTCTCACT+TGG - chr1_1:29656392-29656411 None:intergenic 45.0%
TGGCATCTCAATTGCTGCAA+TGG + chr1_1:29656452-29656471 Msa0017750:CDS 45.0%
TACACCTTCATCACCTGCTT+TGG - chr1_1:29656492-29656511 None:intergenic 45.0%
AACCGTGTAAGCAGAACCAA+TGG - chr1_1:29656606-29656625 None:intergenic 45.0%
! TGGTTCTGCTTACACGGTTT+CGG + chr1_1:29656607-29656626 Msa0017750:CDS 45.0%
! TACACGGTTTCGGCTTTTGT+TGG + chr1_1:29656617-29656636 Msa0017750:CDS 45.0%
AGCAGATTCCTGAGAAAGGT+CGG - chr1_1:29656648-29656667 None:intergenic 45.0%
CATCAGCAGATTCCTGAGAA+AGG - chr1_1:29656652-29656671 None:intergenic 45.0%
CTTCTGTTATGAAGGGTAGC+TGG + chr1_1:29656822-29656841 Msa0017750:CDS 45.0%
TCAGGCCATCCTCAAATTGT+GGG - chr1_1:29657234-29657253 None:intergenic 45.0%
TTCAGGCCATCCTCAAATTG+TGG - chr1_1:29657235-29657254 None:intergenic 45.0%
GATGGCCTGAATAATTGGTC+TGG + chr1_1:29657244-29657263 Msa0017750:CDS 45.0%
TTGCATGATTCCATGGCAGA+TGG + chr1_1:29657286-29657305 Msa0017750:CDS 45.0%
GGAATTCAGCAGGAGATAAC+TGG + chr1_1:29657373-29657392 Msa0017750:CDS 45.0%
CCACAAAGTAGCTCGTACAT+CGG - chr1_1:29657470-29657489 None:intergenic 45.0%
! CGATGTACGAGCTACTTTGT+GGG + chr1_1:29657468-29657487 Msa0017750:intron 45.0%
ATATACTGCTCTCGGAGATC+TGG - chr1_1:29657502-29657521 None:intergenic 45.0%
GATCTCCGAGAGCAGTATAT+AGG + chr1_1:29657502-29657521 Msa0017750:intron 45.0%
!! TGGTGTGTTCTAAAGTGTGC+AGG + chr1_1:29657797-29657816 Msa0017750:intron 45.0%
!! GGTGTGTTCTAAAGTGTGCA+GGG + chr1_1:29657798-29657817 Msa0017750:intron 45.0%
! TAAAGGACCGCTTTGGATGA+GGG - chr1_1:29657873-29657892 None:intergenic 45.0%
! ATAAAGGACCGCTTTGGATG+AGG - chr1_1:29657874-29657893 None:intergenic 45.0%
TATTTAGAGGGACCTCCTTC+TGG + chr1_1:29657891-29657910 Msa0017750:CDS 45.0%
AAGAACTTAGCTGTTGCCCT+AGG + chr1_1:29658170-29658189 Msa0017750:intron 45.0%
! GCCATTGGTGGAAGTATATG+AGG - chr1_1:29658649-29658668 None:intergenic 45.0%
AGAGAATCTCTTGCCATTGG+TGG - chr1_1:29658661-29658680 None:intergenic 45.0%
CCAAGAGAATCTCTTGCCAT+TGG - chr1_1:29658664-29658683 None:intergenic 45.0%
CCAATGGCAAGAGATTCTCT+TGG + chr1_1:29658661-29658680 Msa0017750:CDS 45.0%
AGAGATTCTCTTGGACCTCA+CGG + chr1_1:29658670-29658689 Msa0017750:CDS 45.0%
ATCAAGTATCTGCTTGGGTC+CGG + chr1_1:29658791-29658810 Msa0017750:CDS 45.0%
!! CGGATTGGTTCTGGTTCAAA+TGG + chr1_1:29658811-29658830 Msa0017750:CDS 45.0%
GCTGACAATCAGTGGATCAA+TGG + chr1_1:29658862-29658881 Msa0017750:CDS 45.0%
GACAATCAGTGGATCAATGG+AGG + chr1_1:29658865-29658884 Msa0017750:CDS 45.0%
CCGAGGTTTCAGATGATAGA+TGG + chr1_1:29658893-29658912 Msa0017750:CDS 45.0%
GGTGTAGACTTAATGGTTGC+CGG + chr1_1:29658991-29659010 Msa0017750:CDS 45.0%
GTTGCTTAACATGTGCCCTA+AGG - chr1_1:29659338-29659357 None:intergenic 45.0%
AGTCTAGTCCCGTGAATTTC+AGG - chr1_1:29659546-29659565 None:intergenic 45.0%
ACACAGAACGATTTCCCGAT+TGG + chr1_1:29659604-29659623 Msa0017750:intron 45.0%
TGCTGATGCATGTTCCAATC+GGG - chr1_1:29659621-29659640 None:intergenic 45.0%
CTGCTGATGCATGTTCCAAT+CGG - chr1_1:29659622-29659641 None:intergenic 45.0%
! CCCAGTTGAAGTGTTTCACA+AGG - chr1_1:29659678-29659697 None:intergenic 45.0%
TATTGGACTGAGCCACAACA+AGG + chr1_1:29659724-29659743 Msa0017750:CDS 45.0%
ATTGGACTGAGCCACAACAA+GGG + chr1_1:29659725-29659744 Msa0017750:CDS 45.0%
TGGATGGAACTGTTCAGCAA+TGG + chr1_1:29659836-29659855 Msa0017750:CDS 45.0%
! AGTCTTCTGACTCGCTACAA+GGG + chr1_1:29659913-29659932 Msa0017750:CDS 45.0%
GGACACATAGATAGTCCAGT+TGG + chr1_1:29660183-29660202 Msa0017750:CDS 45.0%
TCAAGCGAAGAACAAACGAC+AGG - chr1_1:29660210-29660229 None:intergenic 45.0%
AGTTATGCTTAGGGAAGCCA+TGG + chr1_1:29660317-29660336 Msa0017750:CDS 45.0%
GGATAATGTTGTGGGGATTC+TGG + chr1_1:29660358-29660377 Msa0017750:CDS 45.0%
GAGTAGGGATAATGCGCATT+TGG + chr1_1:29660392-29660411 Msa0017750:CDS 45.0%
TGATAAAGGTGACTCCCCAA+TGG + chr1_1:29660596-29660615 Msa0017750:CDS 45.0%
!!! AATATTTTTTGAATATTTTT+GGG - chr1_1:29655536-29655555 None:intergenic 5.0%
!!! TTTGTAATTTTAATTTTTAA+AGG + chr1_1:29655902-29655921 Msa0017750:intron 5.0%
!!! TATATATAACATTTAATTTA+TGG + chr1_1:29659295-29659314 Msa0017750:intron 5.0%
!!! ATATATAACATTTAATTTAT+GGG + chr1_1:29659296-29659315 Msa0017750:intron 5.0%
!! AAAAACTTATATATAAATTA+AGG - chr1_1:29659492-29659511 None:intergenic 5.0%
CGTGACCCGTCTCATCAAAT+TGG + chr1_1:29655861-29655880 Msa0017750:intron 50.0%
TCGTCCAAAGCAGGTGATGA+AGG + chr1_1:29656485-29656504 Msa0017750:CDS 50.0%
TTGCCAGCATTCGTTTCGGT+CGG - chr1_1:29656552-29656571 None:intergenic 50.0%
GACCTTGCCAGCATTCGTTT+CGG - chr1_1:29656556-29656575 None:intergenic 50.0%
! TGGAGTATCCGACCTTTCTC+AGG + chr1_1:29656637-29656656 Msa0017750:CDS 50.0%
GAAGGGTAGCTGGGAAAAGT+TGG + chr1_1:29656832-29656851 Msa0017750:CDS 50.0%
GGTAGCTGGGAAAAGTTGGA+AGG + chr1_1:29656836-29656855 Msa0017750:CDS 50.0%
! CACTGTCGACTAAACCCGAT+CGG + chr1_1:29656867-29656886 Msa0017750:CDS 50.0%
! ACTGTCGACTAAACCCGATC+GGG + chr1_1:29656868-29656887 Msa0017750:CDS 50.0%
TATTTGGAAGGACCTGCTCC+TGG + chr1_1:29656899-29656918 Msa0017750:CDS 50.0%
AGCAAGTCAATTCCAGGAGC+AGG - chr1_1:29656914-29656933 None:intergenic 50.0%
! CCGATGTACGAGCTACTTTG+TGG + chr1_1:29657467-29657486 Msa0017750:intron 50.0%
TGCAGGGAACCGATACAGAT+TGG + chr1_1:29657814-29657833 Msa0017750:CDS 50.0%
GCAGGGAACCGATACAGATT+GGG + chr1_1:29657815-29657834 Msa0017750:CDS 50.0%
CAGCGTCACCCAATCTGTAT+CGG - chr1_1:29657826-29657845 None:intergenic 50.0%
TGGATGAGGGGCCATTTAGA+AGG - chr1_1:29657860-29657879 None:intergenic 50.0%
AAATGGCCCCTCATCCAAAG+CGG + chr1_1:29657863-29657882 Msa0017750:CDS 50.0%
! AAAGGACCGCTTTGGATGAG+GGG - chr1_1:29657872-29657891 None:intergenic 50.0%
!! ACAAGAATGTCGGTGCCAGA+AGG - chr1_1:29657909-29657928 None:intergenic 50.0%
AAAAGTCCAACCTGTGCAGC+TGG - chr1_1:29657981-29658000 None:intergenic 50.0%
CAAGTATGTAGCGGCCACTT+AGG - chr1_1:29658699-29658718 None:intergenic 50.0%
GATCAATGGAGGACAAACCG+AGG + chr1_1:29658876-29658895 Msa0017750:CDS 50.0%
TAGCAGCTACCCTAACACCA+TGG + chr1_1:29659567-29659586 Msa0017750:intron 50.0%
! ACACTGCATCTTCTGGGAAG+TGG + chr1_1:29659816-29659835 Msa0017750:CDS 50.0%
! TGCATCTTCTGGGAAGTGGA+TGG + chr1_1:29659820-29659839 Msa0017750:CDS 50.0%
CTTGTAGCGAGTCAGAAGAC+TGG - chr1_1:29659914-29659933 None:intergenic 50.0%
! CAGTCTTCTGACTCGCTACA+AGG + chr1_1:29659912-29659931 Msa0017750:CDS 50.0%
!! ATGTAGCGGACGGATCTAGT+TGG - chr1_1:29660041-29660060 None:intergenic 50.0%
CAAGAACAAGGTGCACCAGT+AGG + chr1_1:29660144-29660163 Msa0017750:CDS 50.0%
! GCGCATTTGGTGAATGCAGA+AGG + chr1_1:29660405-29660424 Msa0017750:CDS 50.0%
GAGTGGCTATCTCACAGTCA+TGG + chr1_1:29660471-29660490 Msa0017750:CDS 50.0%
TAAAGGTGACTCCCCAATGG+AGG + chr1_1:29660599-29660618 Msa0017750:CDS 50.0%
TCACCGACCGAAACGAATGC+TGG + chr1_1:29656546-29656565 Msa0017750:CDS 55.0%
GACCGAAACGAATGCTGGCA+AGG + chr1_1:29656551-29656570 Msa0017750:CDS 55.0%
TACAGATTGGGTGACGCTGC+AGG + chr1_1:29657827-29657846 Msa0017750:CDS 55.0%
ACAGATTGGGTGACGCTGCA+GGG + chr1_1:29657828-29657847 Msa0017750:CDS 55.0%
!! AGAATGTCGGTGCCAGAAGG+AGG - chr1_1:29657906-29657925 None:intergenic 55.0%
GTCTATCGAAACCGGGCCTA+GGG - chr1_1:29658189-29658208 None:intergenic 55.0%
TGTCTATCGAAACCGGGCCT+AGG - chr1_1:29658190-29658209 None:intergenic 55.0%
GGACCTCACGGAATCCTAAG+TGG + chr1_1:29658682-29658701 Msa0017750:CDS 55.0%
AACTTGGATGGGTCCTGCTC+AGG + chr1_1:29658735-29658754 Msa0017750:CDS 55.0%
TTCTCGGTGATCACCTGAGC+AGG - chr1_1:29658751-29658770 None:intergenic 55.0%
GTATCTGCTTGGGTCCGGAT+TGG + chr1_1:29658796-29658815 Msa0017750:CDS 55.0%
! CCACTGATTGTCAGCGCCAA+GGG - chr1_1:29658857-29658876 None:intergenic 55.0%
! TCCACTGATTGTCAGCGCCA+AGG - chr1_1:29658858-29658877 None:intergenic 55.0%
ACGCTTCCGAATCTGCAGTG+TGG - chr1_1:29659515-29659534 None:intergenic 55.0%
AGATGCAGTGTCCGCGAGTT+TGG - chr1_1:29659807-29659826 None:intergenic 55.0%
TCGCGGACACTGCATCTTCT+GGG + chr1_1:29659810-29659829 Msa0017750:CDS 55.0%
GAACAAGGTGCACCAGTAGG+TGG + chr1_1:29660147-29660166 Msa0017750:CDS 55.0%
GGTGCACCAGTAGGTGGAAT+TGG + chr1_1:29660153-29660172 Msa0017750:CDS 55.0%
GAACAAACGACAGGCCCAAC+TGG - chr1_1:29660201-29660220 None:intergenic 55.0%
TTCAACAGCAGGGTGAGCCA+TGG - chr1_1:29660337-29660356 None:intergenic 55.0%
ATGGCTCACCCTGCTGTTGA+AGG + chr1_1:29660336-29660355 Msa0017750:CDS 55.0%
TGGCTCACCCTGCTGTTGAA+GGG + chr1_1:29660337-29660356 Msa0017750:CDS 55.0%
AGACTGGGCACGACTCACAC+CGG + chr1_1:29656177-29656196 Msa0017750:intron 60.0%
! TGTGCAGCTGGTGGTGTCGA+AGG - chr1_1:29657969-29657988 None:intergenic 60.0%
TTCGACACCACCAGCTGCAC+AGG + chr1_1:29657968-29657987 Msa0017750:CDS 60.0%
ACACCACCAGCTGCACAGGT+TGG + chr1_1:29657972-29657991 Msa0017750:intron 60.0%
AGTCCAACCTGTGCAGCTGG+TGG - chr1_1:29657978-29657997 None:intergenic 60.0%
CTTAGCTGTTGCCCTAGGCC+CGG + chr1_1:29658175-29658194 Msa0017750:intron 60.0%
CGGCCACTTAGGATTCCGTG+AGG - chr1_1:29658688-29658707 None:intergenic 60.0%
!! GCTTGGGTCCGGATTGGTTC+TGG + chr1_1:29658802-29658821 Msa0017750:CDS 60.0%
!! CCCTTGGCGCTGACAATCAG+TGG + chr1_1:29658854-29658873 Msa0017750:CDS 60.0%
CTCGCGGACACTGCATCTTC+TGG + chr1_1:29659809-29659828 Msa0017750:CDS 60.0%
TGGACGTGTGCAGCGCAAGC+TGG + chr1_1:29657393-29657412 Msa0017750:CDS 65.0%
! GCAGCTGGTGGTGTCGAAGG+AGG - chr1_1:29657966-29657985 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 29655390 29660638 29655390 ID=Msa0017750;Name=Msa0017750
chr1_1 mRNA 29655390 29660638 29655390 ID=Msa0017750-mRNA-1;Parent=Msa0017750;Name=Msa0017750-mRNA-1;_AED=0.13;_eAED=0.13;_QI=308|0.66|0.71|1|0.66|0.71|7|0|885
chr1_1 exon 29655390 29655775 29655390 ID=Msa0017750-mRNA-1:exon:9874;Parent=Msa0017750-mRNA-1
chr1_1 exon 29656365 29656732 29656365 ID=Msa0017750-mRNA-1:exon:9875;Parent=Msa0017750-mRNA-1
chr1_1 exon 29656820 29656976 29656820 ID=Msa0017750-mRNA-1:exon:9876;Parent=Msa0017750-mRNA-1
chr1_1 exon 29657175 29657485 29657175 ID=Msa0017750-mRNA-1:exon:9877;Parent=Msa0017750-mRNA-1
chr1_1 exon 29657812 29657989 29657812 ID=Msa0017750-mRNA-1:exon:9878;Parent=Msa0017750-mRNA-1
chr1_1 exon 29658541 29659077 29658541 ID=Msa0017750-mRNA-1:exon:9879;Parent=Msa0017750-mRNA-1
chr1_1 exon 29659610 29660638 29659610 ID=Msa0017750-mRNA-1:exon:9880;Parent=Msa0017750-mRNA-1
chr1_1 five_prime_UTR 29655390 29655697 29655390 ID=Msa0017750-mRNA-1:five_prime_utr;Parent=Msa0017750-mRNA-1
chr1_1 CDS 29655698 29655775 29655698 ID=Msa0017750-mRNA-1:cds;Parent=Msa0017750-mRNA-1
chr1_1 CDS 29656365 29656732 29656365 ID=Msa0017750-mRNA-1:cds;Parent=Msa0017750-mRNA-1
chr1_1 CDS 29656820 29656976 29656820 ID=Msa0017750-mRNA-1:cds;Parent=Msa0017750-mRNA-1
chr1_1 CDS 29657175 29657485 29657175 ID=Msa0017750-mRNA-1:cds;Parent=Msa0017750-mRNA-1
chr1_1 CDS 29657812 29657989 29657812 ID=Msa0017750-mRNA-1:cds;Parent=Msa0017750-mRNA-1
chr1_1 CDS 29658541 29659077 29658541 ID=Msa0017750-mRNA-1:cds;Parent=Msa0017750-mRNA-1
chr1_1 CDS 29659610 29660638 29659610 ID=Msa0017750-mRNA-1:cds;Parent=Msa0017750-mRNA-1
Gene Sequence

>Msa0017750

ATGAAGAGGTTCTTCACAAGCTGTGTCTCAAAGTTTCACTCCCACTCGAAACATAAGAAATCTCACTCTCACTCTCAGATAATGGCAGGAAACATCTCTGGTCCAAGTGAGAGCAATGCTGCTAATATTTTGCTGAATCATGACTTCTCAAATGACCTGAACTCTTGGCATCTCAATTGCTGCAATGGCTATGTAATTTCGTCCAAAGCAGGTGATGAAGGTGTAAATTTGATGGATTCGGATTGTAATTATGCTGTTATCACCGACCGAAACGAATGCTGGCAAGGTCTTGAGCAAGATATCACAGACAGAATTTCCATTGGTTCTGCTTACACGGTTTCGGCTTTTGTTGGAGTATCCGACCTTTCTCAGGAATCTGCTGATGTGAAAGCTACACTGAAACTAGAATATCATGATTCAGCTACAAATTATTTGTTCATTGGAGGAACTTCTGTTATGAAGGGTAGCTGGGAAAAGTTGGAAGGAACATTTTCACTGTCGACTAAACCCGATCGGGTTGTATTTTATTTGGAAGGACCTGCTCCTGGAATTGACTTGCTTATAAGATCAGTAGAGATCAACTGTTCCATTCCAAATGACAACAAGTTCACAAGTACAGAAACATGTGTTTCTACTGGAGATGAAAGCATCATAATAAACCCACAATTTGAGGATGGCCTGAATAATTGGTCTGGAAGAAGCTGCAAGATTGTGTTGCATGATTCCATGGCAGATGGTAAAATTGTTCCAAAGTCTGGGAAATATTTTGCATGCGCAACAGAACGAACACAATTCTGGAATGGAATTCAGCAGGAGATAACTGGACGTGTGCAGCGCAAGCTGGCCTATGAGATCACTGCTTTAGTTCGAATATATGGCAACAATGTCACTAATGCCGATGTACGAGCTACTTTTGTGCAGGGAACCGATACAGATTGGGTGACGCTGCAGGGAAAATTCCTTCTAAATGGCCCCTCATCCAAAGCGGTCCTTTATTTAGAGGGACCTCCTTCTGGCACCGACATTCTTGTTAATACTTTGGTTGTAAAGCATGCTGCTAAAACACCTCCTTCGACACCACCAGCTGCACAGAATGTTGCTTTTGGAATTAATATAATTGAGAACAGCAATCTTTCTGATGATACAAAAGGATGGTTTCCACTTGGTAATTGCACTTTAACTGTTAAATCCGGTTCTCCTCATATACTTCCACCAATGGCAAGAGATTCTCTTGGACCTCACGGAATCCTAAGTGGCCGCTACATACTTGTAACTAATAGAACACAAACTTGGATGGGTCCTGCTCAGGTGATCACCGAGAAATTAAAGCTATTTTTGACTTATCAAGTATCTGCTTGGGTCCGGATTGGTTCTGGTTCAAATGGACCACAAAATGTGAATGTTGCCCTTGGCGCTGACAATCAGTGGATCAATGGAGGACAAACCGAGGTTTCAGATGATAGATGGCATGAAATTGGTGGATCCTTTAGAATTGAAAAGCAGCCAACAAAGATTATGGTTTATATTCAAGGTCCAGCTTCTGGTGTAGACTTAATGGTTGCCGGACTTCAAATTTTCCCTGTTGATAGACATGCAAGATTTAGATATTTAAAGATGCAGACAGACAAGAACGATTTCCCGATTGGAACATGCATCAGCAGATCAAACATTGACAATGAAGATTTTGTCAACTTCCTTGTGAAACACTTCAACTGGGCTGTGTTTGCAAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTGAATTACAAAGACGCCGATGATCTTTTAACCTTGTGTCAAAAGTACAAGATCCAAACTCGCGGACACTGCATCTTCTGGGAAGTGGATGGAACTGTTCAGCAATGGATTAAGTCACTGAATAAAAATGATTTGATGACGGCTGTTCAAAACCGATTAACCAGTCTTCTGACTCGCTACAAGGGTAAGTTTAGTCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAAGATAGATTAGGCAAAGATATAAGGGCAAACATGTTCAAGACTGCAAACCAACTAGATCCGTCCGCTACATTGTTTGTGAATGATTATCATATTGAAGATGGATGTGACACAAGATCGTGTCCAAATAAATACATTGAACACATTCTTGATTTGCAAGAACAAGGTGCACCAGTAGGTGGAATTGGAATTCAAGGACACATAGATAGTCCAGTTGGGCCTGTCGTTTGTTCTTCGCTTGATAAATTAGGTATTCTTGGTTTACCGATATGGTTTACAGAACTTGATGTGTCTTCTATGAATGAATATGTGAGAGGTGATGATCTTGAAGTTATGCTTAGGGAAGCCATGGCTCACCCTGCTGTTGAAGGGATAATGTTGTGGGGATTCTGGGAGTTGTTTATGAGTAGGGATAATGCGCATTTGGTGAATGCAGAAGGTGATATTAATGAAGCTGGAAAAAGGTTTCTAGCTTTGAAACAAGAGTGGCTATCTCACAGTCATGGTCATGTTGATGAACAAGGTCAATTCAACTTCAGAGGATTTTATGGAACATATAATGTGGAAATTGTGACACCATCAAAGAAAATTTCGAAGACATTCGTGCTTGATAAAGGTGACTCCCCAATGGAGGTGTCAATTGATTTATAA
Protein sequence

>Msa0017750

MKRFFTSCVSKFHSHSKHKKSHSHSQIMAGNISGPSESNAANILLNHDFSNDLNSWHLNCCNGYVISSKAGDEGVNLMDSDCNYAVITDRNECWQGLEQDITDRISIGSAYTVSAFVGVSDLSQESADVKATLKLEYHDSATNYLFIGGTSVMKGSWEKLEGTFSLSTKPDRVVFYLEGPAPGIDLLIRSVEINCSIPNDNKFTSTETCVSTGDESIIINPQFEDGLNNWSGRSCKIVLHDSMADGKIVPKSGKYFACATERTQFWNGIQQEITGRVQRKLAYEITALVRIYGNNVTNADVRATFVQGTDTDWVTLQGKFLLNGPSSKAVLYLEGPPSGTDILVNTLVVKHAAKTPPSTPPAAQNVAFGINIIENSNLSDDTKGWFPLGNCTLTVKSGSPHILPPMARDSLGPHGILSGRYILVTNRTQTWMGPAQVITEKLKLFLTYQVSAWVRIGSGSNGPQNVNVALGADNQWINGGQTEVSDDRWHEIGGSFRIEKQPTKIMVYIQGPASGVDLMVAGLQIFPVDRHARFRYLKMQTDKNDFPIGTCISRSNIDNEDFVNFLVKHFNWAVFANELKWYWTEPQQGNLNYKDADDLLTLCQKYKIQTRGHCIFWEVDGTVQQWIKSLNKNDLMTAVQNRLTSLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDPSATLFVNDYHIEDGCDTRSCPNKYIEHILDLQEQGAPVGGIGIQGHIDSPVGPVVCSSLDKLGILGLPIWFTELDVSSMNEYVRGDDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSHGHVDEQGQFNFRGFYGTYNVEIVTPSKKISKTFVLDKGDSPMEVSIDL*