Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083040 | 4G78_A | 98.649 | 148 | 2 | 0 | 1 | 148 | 4 | 151 | 1.32e-103 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083040 | sp|Q9ZNV8|AHP2_ARATH | 54.286 | 140 | 63 | 1 | 3 | 141 | 7 | 146 | 2.88e-51 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083040 | G7I2T8 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 8.53e-104 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034480 | Msa0083040 | 0.800092 | 1.694809e-48 | -8.615850e-47 |
| Msa0083040 | Msa0609000 | 0.809279 | 2.046473e-50 | -8.615850e-47 |
| Msa0083040 | Msa0803010 | 0.848000 | 8.097771e-60 | -8.615850e-47 |
| Msa0083040 | Msa0803100 | 0.814908 | 1.212071e-51 | -8.615850e-47 |
| Msa0083040 | Msa0847470 | 0.805625 | 1.219700e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083040 | MtrunA17_Chr1g0196361 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 1.64e-107 | 302 |
| Msa0083040 | MtrunA17_Chr1g0191351 | 49.645 | 141 | 71 | 0 | 1 | 141 | 4 | 144 | 3.38e-52 | 162 |
| Msa0083040 | MtrunA17_Chr7g0273321 | 51.471 | 136 | 65 | 1 | 7 | 141 | 6 | 141 | 4.51e-50 | 157 |
| Msa0083040 | MtrunA17_Chr2g0286781 | 55.245 | 143 | 64 | 0 | 3 | 145 | 5 | 147 | 7.71e-50 | 156 |
| Msa0083040 | MtrunA17_Chr2g0331021 | 40.769 | 130 | 77 | 0 | 5 | 134 | 7 | 136 | 8.63e-36 | 120 |
| Msa0083040 | MtrunA17_Chr2g0331011 | 40.769 | 130 | 77 | 0 | 5 | 134 | 7 | 136 | 2.15e-35 | 120 |
| Msa0083040 | MtrunA17_Chr2g0333131 | 47.761 | 134 | 67 | 2 | 13 | 143 | 18 | 151 | 6.35e-30 | 106 |
| Msa0083040 | MtrunA17_Chr4g0003251 | 48.872 | 133 | 63 | 3 | 15 | 143 | 8 | 139 | 5.97e-25 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083040 | AT3G29350.1 | 54.286 | 140 | 63 | 1 | 3 | 141 | 7 | 146 | 2.93e-52 | 163 |
| Msa0083040 | AT1G03430.1 | 52.703 | 148 | 69 | 1 | 3 | 149 | 8 | 155 | 9.21e-52 | 162 |
| Msa0083040 | AT5G39340.1 | 52.703 | 148 | 69 | 1 | 3 | 149 | 7 | 154 | 1.69e-50 | 159 |
| Msa0083040 | AT5G39340.4 | 52.703 | 148 | 69 | 1 | 3 | 149 | 40 | 187 | 5.42e-50 | 158 |
| Msa0083040 | AT5G39340.2 | 52.703 | 148 | 69 | 1 | 3 | 149 | 56 | 203 | 1.20e-49 | 158 |
| Msa0083040 | AT5G39340.3 | 52.703 | 148 | 69 | 1 | 3 | 149 | 56 | 203 | 1.20e-49 | 158 |
| Msa0083040 | AT1G03430.2 | 54.887 | 133 | 59 | 1 | 3 | 134 | 8 | 140 | 1.75e-49 | 156 |
| Msa0083040 | AT3G21510.1 | 55.474 | 137 | 61 | 0 | 5 | 141 | 7 | 143 | 9.06e-48 | 152 |
| Msa0083040 | AT3G16360.2 | 49.587 | 121 | 61 | 0 | 14 | 134 | 11 | 131 | 4.19e-42 | 137 |
| Msa0083040 | AT3G29350.2 | 55.556 | 108 | 47 | 1 | 3 | 109 | 7 | 114 | 9.64e-41 | 132 |
| Msa0083040 | AT3G16360.1 | 49.580 | 119 | 60 | 0 | 18 | 136 | 9 | 127 | 1.51e-40 | 132 |
| Msa0083040 | AT1G80100.1 | 47.015 | 134 | 68 | 2 | 13 | 143 | 18 | 151 | 5.73e-24 | 91.3 |
| Msa0083040 | AT1G80100.3 | 43.704 | 135 | 75 | 1 | 1 | 134 | 6 | 140 | 1.31e-21 | 85.5 |
| Msa0083040 | AT4G04402.1 | 38.060 | 134 | 72 | 3 | 19 | 141 | 24 | 157 | 5.57e-20 | 81.3 |
| Msa0083040 | AT1G80100.2 | 42.857 | 133 | 53 | 3 | 13 | 143 | 18 | 129 | 1.96e-17 | 73.9 |
Find 33 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATAAGTCTCAAGTTTAT+TGG | 0.165458 | 1_2:+62029248 | None:intergenic |
| CAATCTTAAATACCTATTTA+AGG | 0.205789 | 1_2:-62029636 | Msa0083040:intron |
| TTAAGAAAACTCACCCTTCC+AGG | 0.303814 | 1_2:+62031138 | None:intergenic |
| GATTATTCCTTCAGAATTAG+AGG | 0.326468 | 1_2:-62029349 | Msa0083040:three_prime_UTR |
| TAATAGTACATACCTTAAAT+AGG | 0.352447 | 1_2:+62029624 | None:intergenic |
| AGACATATATGTGCAAATTA+AGG | 0.357159 | 1_2:-62032361 | Msa0083040:five_prime_UTR |
| TTAGAGGATGTTTGAATGTT+GGG | 0.357279 | 1_2:-62029333 | Msa0083040:three_prime_UTR |
| ATTAGAGGATGTTTGAATGT+TGG | 0.391133 | 1_2:-62029334 | Msa0083040:three_prime_UTR |
| ATAACCTCAATCACAAAATC+AGG | 0.417121 | 1_2:+62031875 | None:intergenic |
| CGAAGCTGCTATGTTTCAAC+AGG | 0.430572 | 1_2:-62032117 | Msa0083040:intron |
| TTCAGAATGACATGATATAA+TGG | 0.436941 | 1_2:-62029151 | None:intergenic |
| TGCTCATGCCCATCAACAAA+AGG | 0.448350 | 1_2:-62031335 | Msa0083040:CDS |
| TATCTGGTCTGGTCTGAATT+CGG | 0.450453 | 1_2:+62032285 | None:intergenic |
| ATGTCTGCAACAATTGCAAC+AGG | 0.460807 | 1_2:-62029678 | Msa0083040:CDS |
| TTTGGTGTCTGTATCTGGTC+TGG | 0.461752 | 1_2:+62032274 | None:intergenic |
| GGATAGAACAGATGTGGATA+AGG | 0.474274 | 1_2:-62029312 | Msa0083040:three_prime_UTR |
| TCTATTTGTTTAAAATTCAC+AGG | 0.488923 | 1_2:+62031358 | None:intergenic |
| GTTGAAACATAGCAGCTTCG+TGG | 0.501753 | 1_2:+62032120 | None:intergenic |
| GACTAAAGGGAAAGAAAGTA+CGG | 0.515047 | 1_2:-62032386 | Msa0083040:five_prime_UTR |
| GCAGCTGCAACAAGAAATCA+AGG | 0.530569 | 1_2:-62029496 | Msa0083040:intron |
| TGCGAGGCTCAGAACCTGGA+AGG | 0.534171 | 1_2:-62031152 | Msa0083040:CDS |
| GCTCATGCCCATCAACAAAA+GGG | 0.561552 | 1_2:-62031334 | Msa0083040:CDS |
| CAAACATCCTCTAATTCTGA+AGG | 0.563687 | 1_2:+62029342 | None:intergenic |
| CCGTTAGATCTATTCACACA+AGG | 0.588634 | 1_2:-62029470 | Msa0083040:CDS |
| CCTTGTGTGAATAGATCTAA+CGG | 0.596362 | 1_2:+62029470 | None:intergenic |
| GCGAGGCTCAGAACCTGGAA+GGG | 0.598860 | 1_2:-62031151 | Msa0083040:intron |
| CATATATGTGCAAATTAAGG+AGG | 0.604606 | 1_2:-62032358 | Msa0083040:five_prime_UTR |
| AACACATGGATCACTTACAT+AGG | 0.611392 | 1_2:-62032154 | Msa0083040:exon |
| AACAAAAGGGAAGCAGTGCT+AGG | 0.617678 | 1_2:-62031321 | Msa0083040:intron |
| TTTGTTTGTTTCCGAAAACG+AGG | 0.622533 | 1_2:+62032331 | None:intergenic |
| CGTTAGATCTATTCACACAA+GGG | 0.658003 | 1_2:-62029469 | Msa0083040:CDS |
| ATGTTGGGATAGAACAGATG+TGG | 0.668847 | 1_2:-62029318 | Msa0083040:three_prime_UTR |
| TCGAATCAGAAAATAACACA+TGG | 0.680378 | 1_2:-62032168 | Msa0083040:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAGTACTAAAAATT+TGG | + | chr1_2:62029322-62029341 | None:intergenic | 10.0% |
| !! | AAATAAGAATACAAAAAAAA+AGG | + | chr1_2:62029542-62029561 | None:intergenic | 10.0% |
| !!! | AATTTGATATTATTGGTTAT+TGG | - | chr1_2:62029615-62029634 | Msa0083040:intron | 15.0% |
| !!! | ATTTGATATTATTGGTTATT+GGG | - | chr1_2:62029616-62029635 | Msa0083040:intron | 15.0% |
| !! | TATTACTCTCTTTAATTAAT+TGG | - | chr1_2:62029791-62029810 | Msa0083040:intron | 15.0% |
| !! | AACATCTTAATCAATTAAAA+AGG | - | chr1_2:62029938-62029957 | Msa0083040:intron | 15.0% |
| !! | ATTTGAAAAAGAAAAATAAC+AGG | + | chr1_2:62031113-62031132 | None:intergenic | 15.0% |
| !! | AATACAAGCAATATAATATA+CGG | + | chr1_2:62032051-62032070 | None:intergenic | 15.0% |
| !!! | TTTTTGACTTGAAATTGAAA+AGG | + | chr1_2:62029347-62029366 | None:intergenic | 20.0% |
| !!! | TTTGATATTATTGGTTATTG+GGG | - | chr1_2:62029617-62029636 | Msa0083040:intron | 20.0% |
| !! | TAATAGTAATAGTACTTACA+GGG | + | chr1_2:62029776-62029795 | None:intergenic | 20.0% |
| !! | AATTATTGAATAATATGTGC+CGG | - | chr1_2:62030009-62030028 | Msa0083040:intron | 20.0% |
| !!! | TCTATTTGTTTAAAATTCAC+AGG | + | chr1_2:62030220-62030239 | None:intergenic | 20.0% |
| !! | TAAATAAAATCTACTTCCAT+AGG | + | chr1_2:62030330-62030349 | None:intergenic | 20.0% |
| !! | ATACAAACAAAAACAATTTG+GGG | + | chr1_2:62030955-62030974 | None:intergenic | 20.0% |
| !! | CATACAAACAAAAACAATTT+GGG | + | chr1_2:62030956-62030975 | None:intergenic | 20.0% |
| !! | TCATACAAACAAAAACAATT+TGG | + | chr1_2:62030957-62030976 | None:intergenic | 20.0% |
| !! | CACATCAATTTATATGTATT+AGG | + | chr1_2:62031016-62031035 | None:intergenic | 20.0% |
| !! | AAAGAAAAATAACAGGAATT+AGG | + | chr1_2:62031106-62031125 | None:intergenic | 20.0% |
| !!! | TCTGATTTGTATTATATGAA+AGG | - | chr1_2:62031421-62031440 | Msa0083040:intron | 20.0% |
| !!! | TGAAAGTCTAAAATTTAAGA+TGG | - | chr1_2:62031651-62031670 | Msa0083040:intron | 20.0% |
| !!! | TCTATTTTATACCTGTTATT+CGG | - | chr1_2:62031682-62031701 | Msa0083040:intron | 20.0% |
| !!! | CAAAAAAAAATGTTATTTGC+AGG | - | chr1_2:62031866-62031885 | Msa0083040:CDS | 20.0% |
| !! | CAATCTTAAATACCTATTTA+AGG | - | chr1_2:62031939-62031958 | Msa0083040:intron | 20.0% |
| !! | TAATAGTACATACCTTAAAT+AGG | + | chr1_2:62031954-62031973 | None:intergenic | 20.0% |
| !!! | GTACTATTACGTTTAATTTT+CGG | - | chr1_2:62031965-62031984 | Msa0083040:intron | 20.0% |
| ! | AGACATATATGTGCAAATTA+AGG | - | chr1_2:62029214-62029233 | Msa0083040:three_prime_UTR | 25.0% |
| ! | ACATGTAACGAAAAGATTAT+AGG | + | chr1_2:62029486-62029505 | None:intergenic | 25.0% |
| !! | TTGATATTATTGGTTATTGG+GGG | - | chr1_2:62029618-62029637 | Msa0083040:intron | 25.0% |
| ! | GTAATAGTAATAGTACTTAC+AGG | + | chr1_2:62029777-62029796 | None:intergenic | 25.0% |
| ! | ATTATTGAATAATATGTGCC+GGG | - | chr1_2:62030010-62030029 | Msa0083040:intron | 25.0% |
| !! | ATTTGTTTGTTAAACAGTGT+TGG | - | chr1_2:62030357-62030376 | Msa0083040:intron | 25.0% |
| !! | TTTTCTTTGAATTAGATCCT+CGG | + | chr1_2:62030683-62030702 | None:intergenic | 25.0% |
| ! | AAAGTTTGTGCAAAACTTTA+CGG | - | chr1_2:62031197-62031216 | Msa0083040:CDS | 25.0% |
| !! | TTTCATTTGGTTTATAGGTA+GGG | + | chr1_2:62031298-62031317 | None:intergenic | 25.0% |
| !! | ATTTCATTTGGTTTATAGGT+AGG | + | chr1_2:62031299-62031318 | None:intergenic | 25.0% |
| !! | AGACATTTCATTTGGTTTAT+AGG | + | chr1_2:62031303-62031322 | None:intergenic | 25.0% |
| ! | GTTTATTGAGAAAGTAGTAT+TGG | - | chr1_2:62031337-62031356 | Msa0083040:CDS | 25.0% |
| ! | ACTAAACAAATAGAATCTAC+AGG | - | chr1_2:62031476-62031495 | Msa0083040:intron | 25.0% |
| !! | AGATAGCAACGAAATTATTT+TGG | - | chr1_2:62031565-62031584 | Msa0083040:intron | 25.0% |
| ! | CTCAAAACTTATCAAAACAA+TGG | - | chr1_2:62031803-62031822 | Msa0083040:intron | 25.0% |
| ! | ATGAATACTCCAACATTTAT+AGG | + | chr1_2:62031843-62031862 | None:intergenic | 25.0% |
| !! | TTTTCTTGATTTCTAACTGT+TGG | + | chr1_2:62032152-62032171 | None:intergenic | 25.0% |
| ! | GAAATAAGTCTCAAGTTTAT+TGG | + | chr1_2:62032330-62032349 | None:intergenic | 25.0% |
| !!! | AGAGAGATTGTTTTGACTAA+AGG | - | chr1_2:62029175-62029194 | Msa0083040:three_prime_UTR | 30.0% |
| !!! | GAGAGATTGTTTTGACTAAA+GGG | - | chr1_2:62029176-62029195 | Msa0083040:three_prime_UTR | 30.0% |
| CATATATGTGCAAATTAAGG+AGG | - | chr1_2:62029217-62029236 | Msa0083040:three_prime_UTR | 30.0% | |
| !! | AAAAATTTGGTGTCTGTATC+TGG | + | chr1_2:62029309-62029328 | None:intergenic | 30.0% |
| CTCAATTCAACAGAAAAACA+GGG | + | chr1_2:62029379-62029398 | None:intergenic | 30.0% | |
| TCTCAATTCAACAGAAAAAC+AGG | + | chr1_2:62029380-62029399 | None:intergenic | 30.0% | |
| TCGAATCAGAAAATAACACA+TGG | - | chr1_2:62029407-62029426 | Msa0083040:three_prime_UTR | 30.0% | |
| ATAACCTCAATCACAAAATC+AGG | + | chr1_2:62029703-62029722 | None:intergenic | 30.0% | |
| GTTATACCAAAAACTTTCGT+AGG | - | chr1_2:62030122-62030141 | Msa0083040:intron | 30.0% | |
| !!! | CTTTTAGTTTGTTTGATGCA+TGG | - | chr1_2:62030148-62030167 | Msa0083040:intron | 30.0% |
| GATGCATGGAAATATTAAAC+TGG | - | chr1_2:62030162-62030181 | Msa0083040:intron | 30.0% | |
| GCTAGAGTTAAAAATGTTTG+TGG | - | chr1_2:62030384-62030403 | Msa0083040:intron | 30.0% | |
| CTTAAATTCTTTCATGTTCC+CGG | - | chr1_2:62030455-62030474 | Msa0083040:intron | 30.0% | |
| TTTAAGCAGCTAAATGTTTC+CGG | + | chr1_2:62030477-62030496 | None:intergenic | 30.0% | |
| GTAAGGGTTAAATGCTAAAT+AGG | + | chr1_2:62030826-62030845 | None:intergenic | 30.0% | |
| CAAGTCAGAATTATAGGTAA+GGG | + | chr1_2:62030842-62030861 | None:intergenic | 30.0% | |
| ACGAATTAAGCTAAAATCAG+TGG | + | chr1_2:62030890-62030909 | None:intergenic | 30.0% | |
| !!! | ACTGATTTTAGCTTAATTCG+TGG | - | chr1_2:62030889-62030908 | Msa0083040:intron | 30.0% |
| GAAAAATAACAGGAATTAGG+AGG | + | chr1_2:62031103-62031122 | None:intergenic | 30.0% | |
| TCAAAAGTAGAGAATTGTGT+AGG | + | chr1_2:62031168-62031187 | None:intergenic | 30.0% | |
| AAGTTTGTGCAAAACTTTAC+GGG | - | chr1_2:62031198-62031217 | Msa0083040:CDS | 30.0% | |
| GACTTAGAAGACATTTCATT+TGG | + | chr1_2:62031311-62031330 | None:intergenic | 30.0% | |
| TACTACTTTCTCAATAAACG+TGG | + | chr1_2:62031336-62031355 | None:intergenic | 30.0% | |
| GATTATTGTGGACATTTCAT+TGG | + | chr1_2:62031732-62031751 | None:intergenic | 30.0% | |
| TGTCCACAATAATCCTTAAA+AGG | - | chr1_2:62031738-62031757 | Msa0083040:intron | 30.0% | |
| ! | TCAAGCTATTTCGATAAAGA+CGG | - | chr1_2:62031990-62032009 | Msa0083040:intron | 30.0% |
| AATAGATGATGTCTATTAGG+AGG | + | chr1_2:62032028-62032047 | None:intergenic | 30.0% | |
| GATTATTCCTTCAGAATTAG+AGG | - | chr1_2:62032226-62032245 | Msa0083040:five_prime_UTR | 30.0% | |
| ATTAGAGGATGTTTGAATGT+TGG | - | chr1_2:62032241-62032260 | Msa0083040:five_prime_UTR | 30.0% | |
| TTAGAGGATGTTTGAATGTT+GGG | - | chr1_2:62032242-62032261 | Msa0083040:five_prime_UTR | 30.0% | |
| TCTCTCAGTCAAAAACTCTA+AGG | + | chr1_2:62029160-62029179 | None:intergenic | 35.0% | |
| GACTAAAGGGAAAGAAAGTA+CGG | - | chr1_2:62029189-62029208 | Msa0083040:three_prime_UTR | 35.0% | |
| TTTGTTTGTTTCCGAAAACG+AGG | + | chr1_2:62029247-62029266 | None:intergenic | 35.0% | |
| AACACATGGATCACTTACAT+AGG | - | chr1_2:62029421-62029440 | Msa0083040:three_prime_UTR | 35.0% | |
| ! | TAGTCCTGATTTTGTGATTG+AGG | - | chr1_2:62029696-62029715 | Msa0083040:intron | 35.0% |
| TACATAGCACAAAAGTTGGA+GGG | - | chr1_2:62030047-62030066 | Msa0083040:intron | 35.0% | |
| !!! | GAAAGTTTTTGGTATAACCC+AGG | + | chr1_2:62030120-62030139 | None:intergenic | 35.0% |
| ! | AAGTCACCTACGAAAGTTTT+TGG | + | chr1_2:62030131-62030150 | None:intergenic | 35.0% |
| TGTATTAGTGCACTAACCTA+TGG | - | chr1_2:62030311-62030330 | Msa0083040:intron | 35.0% | |
| TTAAGCAGCTAAATGTTTCC+GGG | + | chr1_2:62030476-62030495 | None:intergenic | 35.0% | |
| GGATTACAAAAGATACTACC+GGG | + | chr1_2:62030751-62030770 | None:intergenic | 35.0% | |
| GGGATTACAAAAGATACTAC+CGG | + | chr1_2:62030752-62030771 | None:intergenic | 35.0% | |
| !!! | GCTGAGAATAAGTTTTAGAG+GGG | + | chr1_2:62030772-62030791 | None:intergenic | 35.0% |
| !!! | CGCTGAGAATAAGTTTTAGA+GGG | + | chr1_2:62030773-62030792 | None:intergenic | 35.0% |
| !! | ACGCTGAGAATAAGTTTTAG+AGG | + | chr1_2:62030774-62030793 | None:intergenic | 35.0% |
| AACTTATTCTCAGCGTTCTT+TGG | - | chr1_2:62030778-62030797 | Msa0083040:intron | 35.0% | |
| CCAAGTCAGAATTATAGGTA+AGG | + | chr1_2:62030843-62030862 | None:intergenic | 35.0% | |
| CCTTACCTATAATTCTGACT+TGG | - | chr1_2:62030840-62030859 | Msa0083040:intron | 35.0% | |
| !!! | CCTTTTTTTACACTCAGAAG+GGG | + | chr1_2:62031055-62031074 | None:intergenic | 35.0% |
| !!! | CCCTTTTTTTACACTCAGAA+GGG | + | chr1_2:62031056-62031075 | None:intergenic | 35.0% |
| CCCTTCTGAGTGTAAAAAAA+GGG | - | chr1_2:62031053-62031072 | Msa0083040:intron | 35.0% | |
| ! | GCAAAAAAGTGTACACAGTT+TGG | - | chr1_2:62031075-62031094 | Msa0083040:intron | 35.0% |
| AAATGAGCAAACAGAAAACG+TGG | - | chr1_2:62031517-62031536 | Msa0083040:intron | 35.0% | |
| AATGAGCAAACAGAAAACGT+GGG | - | chr1_2:62031518-62031537 | Msa0083040:intron | 35.0% | |
| CAAGCTTAGACAAATACAAG+TGG | + | chr1_2:62031708-62031727 | None:intergenic | 35.0% | |
| !! | ACGCCTTTTAAGGATTATTG+TGG | + | chr1_2:62031744-62031763 | None:intergenic | 35.0% |
| ! | TCCTTAAAAGGCGTATTCAA+TGG | - | chr1_2:62031750-62031769 | Msa0083040:intron | 35.0% |
| ! | ACCATTGAATACGCCTTTTA+AGG | + | chr1_2:62031754-62031773 | None:intergenic | 35.0% |
| ACATCACTGCCTATAAATGT+TGG | - | chr1_2:62031831-62031850 | Msa0083040:CDS | 35.0% | |
| CGGAATAGATGATGTCTATT+AGG | + | chr1_2:62032031-62032050 | None:intergenic | 35.0% | |
| CCTTGTGTGAATAGATCTAA+CGG | + | chr1_2:62032108-62032127 | None:intergenic | 35.0% | |
| CGTTAGATCTATTCACACAA+GGG | - | chr1_2:62032106-62032125 | Msa0083040:intron | 35.0% | |
| !!! | TTGCTTGTTTTGGTTTTTGC+TGG | - | chr1_2:62032204-62032223 | Msa0083040:five_prime_UTR | 35.0% |
| CAAACATCCTCTAATTCTGA+AGG | + | chr1_2:62032236-62032255 | None:intergenic | 35.0% | |
| ! | AAGGAGGAAATCCTCGTTTT+CGG | - | chr1_2:62029233-62029252 | Msa0083040:three_prime_UTR | 40.0% |
| TATCTGGTCTGGTCTGAATT+CGG | + | chr1_2:62029293-62029312 | None:intergenic | 40.0% | |
| CAACAGAAAAACAGGGTTGA+AGG | + | chr1_2:62029372-62029391 | None:intergenic | 40.0% | |
| GTTAGTGTCAATATCGTGTC+TGG | + | chr1_2:62029877-62029896 | None:intergenic | 40.0% | |
| GTGCTACATAGCACAAAAGT+TGG | - | chr1_2:62030043-62030062 | Msa0083040:intron | 40.0% | |
| CTACATAGCACAAAAGTTGG+AGG | - | chr1_2:62030046-62030065 | Msa0083040:intron | 40.0% | |
| ACCCTAGGATACGACAATTT+GGG | + | chr1_2:62030091-62030110 | None:intergenic | 40.0% | |
| TACCCTAGGATACGACAATT+TGG | + | chr1_2:62030092-62030111 | None:intergenic | 40.0% | |
| ! | ACTGCTTCCCTTTTGTTGAT+GGG | + | chr1_2:62030251-62030270 | None:intergenic | 40.0% |
| ! | CACGTTCAGAAATTTTTGCG+AGG | - | chr1_2:62030407-62030426 | Msa0083040:intron | 40.0% |
| TTAAGAAAACTCACCCTTCC+AGG | + | chr1_2:62030440-62030459 | None:intergenic | 40.0% | |
| CATATGTCCCCATGTATGTT+TGG | - | chr1_2:62030603-62030622 | Msa0083040:intron | 40.0% | |
| TTCGACACCAAACATACATG+GGG | + | chr1_2:62030613-62030632 | None:intergenic | 40.0% | |
| CTTCGACACCAAACATACAT+GGG | + | chr1_2:62030614-62030633 | None:intergenic | 40.0% | |
| ACTTCGACACCAAACATACA+TGG | + | chr1_2:62030615-62030634 | None:intergenic | 40.0% | |
| ! | AAAGCTTTAGCAATCTACCG+AGG | - | chr1_2:62030663-62030682 | Msa0083040:intron | 40.0% |
| AACTACATCTTGAATCTGCC+CGG | - | chr1_2:62030730-62030749 | Msa0083040:intron | 40.0% | |
| GGAGTCCAAGTCAGAATTAT+AGG | + | chr1_2:62030848-62030867 | None:intergenic | 40.0% | |
| CTCCTTCACAACTTATCTTG+AGG | - | chr1_2:62030864-62030883 | Msa0083040:intron | 40.0% | |
| CCCCTTCTGAGTGTAAAAAA+AGG | - | chr1_2:62031052-62031071 | Msa0083040:intron | 40.0% | |
| !!! | GCCCTTTTTTTACACTCAGA+AGG | + | chr1_2:62031057-62031076 | None:intergenic | 40.0% |
| TATAGGTAGGGAAACGTAGA+AGG | + | chr1_2:62031286-62031305 | None:intergenic | 40.0% | |
| GCTCATTTATCACTGTGTTG+TGG | + | chr1_2:62031505-62031524 | None:intergenic | 40.0% | |
| ! | CAATAAGTTGAGAGAGACGA+CGG | - | chr1_2:62031541-62031560 | Msa0083040:intron | 40.0% |
| AGACTTTAATCCTCACCTCT+TGG | - | chr1_2:62031603-62031622 | Msa0083040:intron | 40.0% | |
| AAAAGTTAGTCCAAGAGGTG+AGG | + | chr1_2:62031616-62031635 | None:intergenic | 40.0% | |
| ! | ACCTCTTGGACTAACTTTTG+AGG | - | chr1_2:62031617-62031636 | Msa0083040:intron | 40.0% |
| ACCTCAAAAGTTAGTCCAAG+AGG | + | chr1_2:62031621-62031640 | None:intergenic | 40.0% | |
| AATACAAGTGGCCGAATAAC+AGG | + | chr1_2:62031696-62031715 | None:intergenic | 40.0% | |
| ATGTCTGCAACAATTGCAAC+AGG | - | chr1_2:62031897-62031916 | Msa0083040:CDS | 40.0% | |
| CCGTTAGATCTATTCACACA+AGG | - | chr1_2:62032105-62032124 | Msa0083040:intron | 40.0% | |
| !! | GCAGCTGATTTTGCTTGTTT+TGG | - | chr1_2:62032194-62032213 | Msa0083040:five_prime_UTR | 40.0% |
| ATGTTGGGATAGAACAGATG+TGG | - | chr1_2:62032257-62032276 | Msa0083040:five_prime_UTR | 40.0% | |
| GGATAGAACAGATGTGGATA+AGG | - | chr1_2:62032263-62032282 | Msa0083040:five_prime_UTR | 40.0% | |
| !! | TTTGGTGTCTGTATCTGGTC+TGG | + | chr1_2:62029304-62029323 | None:intergenic | 45.0% |
| GTTGAAACATAGCAGCTTCG+TGG | + | chr1_2:62029458-62029477 | None:intergenic | 45.0% | |
| CGAAGCTGCTATGTTTCAAC+AGG | - | chr1_2:62029458-62029477 | Msa0083040:exon | 45.0% | |
| ! | TTATTGGTTATTGGGGGAGC+AGG | - | chr1_2:62029624-62029643 | Msa0083040:intron | 45.0% |
| ! | TATTGGTTATTGGGGGAGCA+GGG | - | chr1_2:62029625-62029644 | Msa0083040:intron | 45.0% |
| CTAGGATACGACAATTTGGG+CGG | + | chr1_2:62030088-62030107 | None:intergenic | 45.0% | |
| GCCCAAATTGTCGTATCCTA+GGG | - | chr1_2:62030087-62030106 | Msa0083040:intron | 45.0% | |
| TATCCTAGGGTACGATACCT+GGG | - | chr1_2:62030100-62030119 | Msa0083040:intron | 45.0% | |
| TGCTCATGCCCATCAACAAA+AGG | - | chr1_2:62030240-62030259 | Msa0083040:intron | 45.0% | |
| GCTCATGCCCATCAACAAAA+GGG | - | chr1_2:62030241-62030260 | Msa0083040:intron | 45.0% | |
| ! | CACTGCTTCCCTTTTGTTGA+TGG | + | chr1_2:62030252-62030271 | None:intergenic | 45.0% |
| AACAAAAGGGAAGCAGTGCT+AGG | - | chr1_2:62030254-62030273 | Msa0083040:intron | 45.0% | |
| GGCCTCAAGATAAGTTGTGA+AGG | + | chr1_2:62030869-62030888 | None:intergenic | 45.0% | |
| TGTATGCTTCGTGCAGTCAT+TGG | + | chr1_2:62031447-62031466 | None:intergenic | 45.0% | |
| GCAGCTGCAACAAGAAATCA+AGG | - | chr1_2:62032079-62032098 | Msa0083040:intron | 45.0% | |
| !! | TTTAATAAATTTGATATTAT+TGG | - | chr1_2:62029608-62029627 | Msa0083040:intron | 5.0% |
| CGCCCAAATTGTCGTATCCT+AGG | - | chr1_2:62030086-62030105 | Msa0083040:intron | 50.0% | |
| GTATCCTAGGGTACGATACC+TGG | - | chr1_2:62030099-62030118 | Msa0083040:intron | 50.0% | |
| ! | TAACCCAGGTATCGTACCCT+AGG | + | chr1_2:62030106-62030125 | None:intergenic | 50.0% |
| ! | TTTTTGCGAGGCTCAGAACC+TGG | - | chr1_2:62030419-62030438 | Msa0083040:intron | 50.0% |
| ATTGGGGGAGCAGGGTTATC+TGG | - | chr1_2:62029633-62029652 | Msa0083040:intron | 55.0% | |
| TGTAGCACGTGTGCGACACC+CGG | + | chr1_2:62030031-62030050 | None:intergenic | 60.0% | |
| TGCGAGGCTCAGAACCTGGA+AGG | - | chr1_2:62030423-62030442 | Msa0083040:intron | 60.0% | |
| GCGAGGCTCAGAACCTGGAA+GGG | - | chr1_2:62030424-62030443 | Msa0083040:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 62029153 | 62032444 | 62029153 | ID=Msa0083040;Name=Msa0083040 |
| chr1_2 | mRNA | 62029153 | 62032444 | 62029153 | ID=Msa0083040-mRNA-1;Parent=Msa0083040;Name=Msa0083040-mRNA-1;_AED=0.01;_eAED=0.01;_QI=273|1|1|1|1|1|6|311|149 |
| chr1_2 | exon | 62029153 | 62029514 | 62029153 | ID=Msa0083040-mRNA-1:exon:20586;Parent=Msa0083040-mRNA-1 |
| chr1_2 | exon | 62029637 | 62029709 | 62029637 | ID=Msa0083040-mRNA-1:exon:20585;Parent=Msa0083040-mRNA-1 |
| chr1_2 | exon | 62031152 | 62031223 | 62031152 | ID=Msa0083040-mRNA-1:exon:20584;Parent=Msa0083040-mRNA-1 |
| chr1_2 | exon | 62031322 | 62031390 | 62031322 | ID=Msa0083040-mRNA-1:exon:20583;Parent=Msa0083040-mRNA-1 |
| chr1_2 | exon | 62031821 | 62031951 | 62031821 | ID=Msa0083040-mRNA-1:exon:20582;Parent=Msa0083040-mRNA-1 |
| chr1_2 | exon | 62032118 | 62032444 | 62032118 | ID=Msa0083040-mRNA-1:exon:20581;Parent=Msa0083040-mRNA-1 |
| chr1_2 | five_prime_UTR | 62032172 | 62032444 | 62032172 | ID=Msa0083040-mRNA-1:five_prime_utr;Parent=Msa0083040-mRNA-1 |
| chr1_2 | CDS | 62032118 | 62032171 | 62032118 | ID=Msa0083040-mRNA-1:cds;Parent=Msa0083040-mRNA-1 |
| chr1_2 | CDS | 62031821 | 62031951 | 62031821 | ID=Msa0083040-mRNA-1:cds;Parent=Msa0083040-mRNA-1 |
| chr1_2 | CDS | 62031322 | 62031390 | 62031322 | ID=Msa0083040-mRNA-1:cds;Parent=Msa0083040-mRNA-1 |
| chr1_2 | CDS | 62031152 | 62031223 | 62031152 | ID=Msa0083040-mRNA-1:cds;Parent=Msa0083040-mRNA-1 |
| chr1_2 | CDS | 62029637 | 62029709 | 62029637 | ID=Msa0083040-mRNA-1:cds;Parent=Msa0083040-mRNA-1 |
| chr1_2 | CDS | 62029464 | 62029514 | 62029464 | ID=Msa0083040-mRNA-1:cds;Parent=Msa0083040-mRNA-1 |
| chr1_2 | three_prime_UTR | 62029153 | 62029463 | 62029153 | ID=Msa0083040-mRNA-1:three_prime_utr;Parent=Msa0083040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
