AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0847470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0847470 MtrunA17_Chr5g0420191 91.652 587 23 4 1 562 1 586 0.0 1009
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0847470 AT1G69060.1 33.444 604 262 21 55 557 61 625 3.28e-61 213

Find 129 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATCCAGCCATTAAATT+TGG 0.111745 5_4:-29587024 None:intergenic
TACAGCCCATCTTCAAAATT+TGG 0.160934 5_4:-29587090 None:intergenic
ATTCATCCATTTCGTGTATT+TGG 0.164612 5_4:+29587115 Msa0847470:three_prime_UTR
CCCTTTCGCCTGACCAGTTT+TGG 0.189270 5_4:-29582394 None:intergenic
AGAAATCGTTATGGTTTATA+TGG 0.200313 5_4:+29582816 Msa0847470:CDS
AATGAGCATGTCAGTTCTTC+TGG 0.236888 5_4:+29582939 Msa0847470:CDS
AAATTTAATGGCTGGATAAT+AGG 0.237961 5_4:+29587026 Msa0847470:three_prime_UTR
ATTATCCAGCCATTAAATTT+GGG 0.259959 5_4:-29587023 None:intergenic
TTATATAGTCGGACTGGATA+TGG 0.273072 5_4:+29586904 Msa0847470:three_prime_UTR
AGAGGATACCGCAATGAAAA+AGG 0.281900 5_4:+29582905 Msa0847470:CDS
CTTAAGCATAGCCTGTTTAT+AGG 0.288626 5_4:-29586762 None:intergenic
TGATGACGAGTCTACATTTA+AGG 0.306104 5_4:+29583198 Msa0847470:CDS
CGATTTCTTTCTTTAGCGTT+TGG 0.328724 5_4:-29582801 None:intergenic
CAGCCCCGAACATGTTCTTC+GGG 0.342474 5_4:+29582360 Msa0847470:CDS
GGCTGAGAATAGCCGATTGC+TGG 0.345114 5_4:+29585396 Msa0847470:CDS
ATAACATAGAAGCGGAAAAT+AGG 0.354976 5_4:+29582982 Msa0847470:CDS
AGAAAGGACAACTAAGAAAA+AGG 0.357996 5_4:+29583097 Msa0847470:CDS
GACGGTGATGTCTATGAAAA+TGG 0.359501 5_4:+29582711 Msa0847470:CDS
AAAGAAGAAGCTCAATCATT+TGG 0.361204 5_4:+29585795 Msa0847470:CDS
GTCATCACCCAGTTCATTCC+TGG 0.362711 5_4:-29583182 None:intergenic
GTGTCTCTCTCACTTCTTCA+AGG 0.364573 5_4:-29585444 None:intergenic
AATTTCTGTAACGGTGTTGC+TGG 0.370750 5_4:+29583274 Msa0847470:CDS
CTTCCCCGAAGAACATGTTC+GGG 0.372830 5_4:-29582364 None:intergenic
TAAACACAACTTGCCTCCTT+TGG 0.390211 5_4:-29585892 None:intergenic
GTACTACCAAATACACGAAA+TGG 0.394135 5_4:-29587121 None:intergenic
ACAGAGACAATTGCAAATTC+AGG 0.403793 5_4:+29583648 Msa0847470:CDS
TTCAAAGTCCAGGAATGAAC+TGG 0.404582 5_4:+29583174 Msa0847470:intron
ACCTCACTGCTTCGTGGCTT+AGG 0.408795 5_4:+29585838 Msa0847470:CDS
GGGAAGAATGCATCCAAAAC+TGG 0.409192 5_4:+29582381 Msa0847470:CDS
GGATGCCATTTCCTCTTCCA+TGG 0.411553 5_4:-29583623 None:intergenic
TCAGCCCCGAACATGTTCTT+CGG 0.412628 5_4:+29582359 Msa0847470:CDS
GTCGATGTTCTATCTTTACT+TGG 0.414881 5_4:-29582492 None:intergenic
AATTTGCAATTGTCTCTGTC+TGG 0.419574 5_4:-29583644 None:intergenic
ATTTCTGAAGAGAATTCTAA+TGG 0.431168 5_4:+29583460 Msa0847470:CDS
TTCTTTCAATGTCCAGCAAT+CGG 0.431241 5_4:-29585408 None:intergenic
AAAAGCCATGGAAGAGGAAA+TGG 0.433668 5_4:+29583618 Msa0847470:CDS
CATGGGAAAGGTCCTTTATA+TGG 0.433963 5_4:+29583014 Msa0847470:CDS
TTGTCATCTTTACTCCTCAA+TGG 0.439565 5_4:-29583436 None:intergenic
TCTTCCCCGAAGAACATGTT+CGG 0.440558 5_4:-29582365 None:intergenic
GGTGCATACTGCCTATAAAC+AGG 0.450481 5_4:+29586751 Msa0847470:intron
CCAAAACTGGTCAGGCGAAA+GGG 0.450590 5_4:+29582394 Msa0847470:CDS
GAAATCGTTATGGTTTATAT+GGG 0.451015 5_4:+29582817 Msa0847470:CDS
CATGTCATGTGCACCTTGGT+TGG 0.453848 5_4:-29583350 None:intergenic
GATATGCCTTTCATCAAAAG+AGG 0.454831 5_4:-29583485 None:intergenic
TATGATGATGTAGAAATCAT+AGG 0.455972 5_4:+29582459 Msa0847470:CDS
ATATGGTCCTAGTTGTAGTA+AGG 0.458017 5_4:+29583031 Msa0847470:CDS
AAGAACTAGGGGCTAGCAAA+AGG 0.458708 5_4:+29587161 Msa0847470:three_prime_UTR
CTACAACTAGGACCATATAA+AGG 0.459702 5_4:-29583026 None:intergenic
TGTTGATGGTGTTGGAGAGT+TGG 0.461044 5_4:+29582611 Msa0847470:CDS
GCGATGCCTCTTCAAACAAA+AGG 0.465308 5_4:+29582637 Msa0847470:CDS
GCTAAAGAAAGAAATCGTTA+TGG 0.468168 5_4:+29582807 Msa0847470:CDS
TCTATCTTTACTTGGCCCAC+TGG 0.468887 5_4:-29582484 None:intergenic
GGAATTGATGTTGATGGTGT+TGG 0.481618 5_4:+29582603 Msa0847470:CDS
GGTTCTTCAAGTTTGAAGAA+AGG 0.482757 5_4:+29583295 Msa0847470:CDS
GATTTCCACGCGGAACTTGA+GGG 0.489022 5_4:-29582669 None:intergenic
GAATGCATCCAAAACTGGTC+AGG 0.491520 5_4:+29582386 Msa0847470:CDS
TCACTGGTGAGGATGATATT+CGG 0.494559 5_4:+29583069 Msa0847470:CDS
AGATTTCCACGCGGAACTTG+AGG 0.495937 5_4:-29582670 None:intergenic
TTTGATGAAAGGCATATCAA+TGG 0.497644 5_4:+29583490 Msa0847470:CDS
TGTCCGTCATGTGCATTCAA+TGG 0.499716 5_4:-29583394 None:intergenic
TCGCGAGCAGGTTGAGGCTG+AGG 0.502540 5_4:+29586817 Msa0847470:CDS
ACATGTAAAGGTTATAACTT+AGG 0.503607 5_4:+29587062 Msa0847470:three_prime_UTR
GAGAATCAATCTTCCTTCAC+TGG 0.508407 5_4:+29583053 Msa0847470:CDS
CAGGTATAGATGCTTGGAAA+AGG 0.509013 5_4:+29582318 None:intergenic
CAAGCTCATCTCACGTATGA+AGG 0.509987 5_4:+29586847 Msa0847470:CDS
CAGTCTGGAATTGATGTTGA+TGG 0.512375 5_4:+29582597 Msa0847470:CDS
TATCCAGCCATTAAATTTGG+GGG 0.517166 5_4:-29587021 None:intergenic
TCAAGTTTGAAGAAAGGACT+AGG 0.517853 5_4:+29583301 Msa0847470:CDS
TGACATTCGCGAGCAGGTTG+AGG 0.523174 5_4:+29586811 Msa0847470:CDS
GATATGACCTCACTGCTTCG+TGG 0.524304 5_4:+29585832 Msa0847470:CDS
CGTGGCTTAGGAGTAAATGT+GGG 0.525737 5_4:+29585850 Msa0847470:CDS
TCCAAAACTGGTCAGGCGAA+AGG 0.525772 5_4:+29582393 Msa0847470:CDS
GATCTGTGATATTACTAACT+TGG 0.528055 5_4:+29587198 Msa0847470:three_prime_UTR
ATGATATTCGGAATGGAGAA+AGG 0.529183 5_4:+29583081 Msa0847470:CDS
GTGATGCAGGTATAGATGCT+TGG 0.534613 5_4:+29582312 None:intergenic
AGTGATGATGTGGATCAGTC+TGG 0.536146 5_4:+29582582 Msa0847470:CDS
TAAAGAACAAGAACATGTAA+AGG 0.536962 5_4:+29587050 Msa0847470:three_prime_UTR
AGCAAAAGGGATTGAAACAA+AGG 0.537014 5_4:+29587175 Msa0847470:three_prime_UTR
TACTGTCATATGAAAGAACT+AGG 0.543049 5_4:+29587148 Msa0847470:three_prime_UTR
AGAACTAGGGGCTAGCAAAA+GGG 0.551554 5_4:+29587162 Msa0847470:three_prime_UTR
GAAAATAGGTCTGAAAAGCA+TGG 0.554736 5_4:+29582996 Msa0847470:CDS
AAAACGTGAACAGTGGGAAG+AGG 0.555343 5_4:+29582887 Msa0847470:CDS
TCGTGGCTTAGGAGTAAATG+TGG 0.557564 5_4:+29585849 Msa0847470:CDS
TTTAAGGATGATATTCAGCA+TGG 0.562013 5_4:+29583214 Msa0847470:CDS
CACTAGATTAATTATATAGT+CGG 0.562148 5_4:+29586893 Msa0847470:exon
CAAAACTGGTCAGGCGAAAG+GGG 0.562765 5_4:+29582395 Msa0847470:CDS
CAACTTGCCTCCTTTGGCGA+AGG 0.564478 5_4:-29585886 None:intergenic
GCAAAAGGGATTGAAACAAA+GGG 0.567756 5_4:+29587176 Msa0847470:three_prime_UTR
AGTGAGAGAGACACTAAAGA+AGG 0.569017 5_4:+29585453 Msa0847470:CDS
AATATCATCCTCACCAGTGA+AGG 0.573976 5_4:-29583066 None:intergenic
GATTAATTATATAGTCGGAC+TGG 0.575724 5_4:+29586898 Msa0847470:exon
GAAAACTCTAATTTCTGTAA+CGG 0.577066 5_4:+29583265 Msa0847470:CDS
TTATCCAGCCATTAAATTTG+GGG 0.582697 5_4:-29587022 None:intergenic
GAACACGAAAGATGAAATGC+GGG 0.583195 5_4:+29585765 Msa0847470:CDS
CTTGCATGTCATGTGCACCT+TGG 0.589414 5_4:-29583354 None:intergenic
GGTGAGGATGATATTCGGAA+TGG 0.591451 5_4:+29583074 Msa0847470:CDS
TGATTCTCCTTACTACAACT+AGG 0.592848 5_4:-29583038 None:intergenic
AAAATAGGTCTGAAAAGCAT+GGG 0.595327 5_4:+29582997 Msa0847470:CDS
TCAATCTTCCTTCACTGGTG+AGG 0.595363 5_4:+29583058 Msa0847470:CDS
TCTTAGACCTTCGCCAAAGG+AGG 0.597910 5_4:+29585879 Msa0847470:CDS
AGGTCTGAAAAGCATGGGAA+AGG 0.602874 5_4:+29583002 Msa0847470:CDS
CGATGATGAAAGTGATGATG+TGG 0.607173 5_4:+29582572 Msa0847470:CDS
AAGTCTTAGACCTTCGCCAA+AGG 0.611790 5_4:+29585876 Msa0847470:CDS
GATTGCTGGACATTGAAAGA+AGG 0.617880 5_4:+29585410 Msa0847470:CDS
ACTGTCATATGAAAGAACTA+GGG 0.619402 5_4:+29587149 Msa0847470:three_prime_UTR
GTGGCTTAGGAGTAAATGTG+GGG 0.622737 5_4:+29585851 Msa0847470:CDS
CTGTCATATGAAAGAACTAG+GGG 0.623929 5_4:+29587150 Msa0847470:three_prime_UTR
GGTCATAAAACGTGAACAGT+GGG 0.631375 5_4:+29582881 Msa0847470:CDS
AAAATGGTTCTGTTTCGAAG+AGG 0.636112 5_4:+29582727 Msa0847470:CDS
TAATTACAATAACATAGAAG+CGG 0.637745 5_4:+29582974 Msa0847470:CDS
TCAAAGTCCAGGAATGAACT+GGG 0.638802 5_4:+29583175 Msa0847470:intron
AGGTCATAAAACGTGAACAG+TGG 0.641789 5_4:+29582880 Msa0847470:CDS
TGAACACGAAAGATGAAATG+CGG 0.642166 5_4:+29585764 Msa0847470:CDS
TCTCCATTGAATGCACATGA+CGG 0.644527 5_4:+29583391 Msa0847470:CDS
AAATTTATGAGCTCCAACCA+AGG 0.645106 5_4:+29583337 Msa0847470:CDS
AAGCTTCTGCTTCTAACGTG+CGG 0.646962 5_4:+29582763 Msa0847470:CDS
TGACATGCTCATTAAACACA+CGG 0.647259 5_4:-29582929 None:intergenic
ACAATGATGAATCTCCATTG+AGG 0.653343 5_4:+29583422 Msa0847470:CDS
TTCCCCGAAGAACATGTTCG+GGG 0.662747 5_4:-29582363 None:intergenic
GTAGAAATCATAGGATCCAG+TGG 0.663165 5_4:+29582468 Msa0847470:CDS
TAGAAATCATAGGATCCAGT+GGG 0.671951 5_4:+29582469 Msa0847470:CDS
TAGCGATTGTTCTGATTGTG+AGG 0.680578 5_4:+29582860 Msa0847470:CDS
AGCCCCGAACATGTTCTTCG+GGG 0.683401 5_4:+29582361 Msa0847470:CDS
TCAATGCTGATAACACTCTG+AGG 0.703057 5_4:-29582516 None:intergenic
TCCTAAGCCACGAAGCAGTG+AGG 0.703909 5_4:-29585839 None:intergenic
CTATGCCCTCAAGTTCCGCG+TGG 0.708335 5_4:+29582664 Msa0847470:CDS
TGGCTTAGGAGTAAATGTGG+GGG 0.719417 5_4:+29585852 Msa0847470:CDS
GTATACGTAGATGTTGATGA+CGG 0.759264 5_4:+29582693 Msa0847470:CDS
TACGTATACAGATTTCCACG+CGG 0.870448 5_4:-29582679 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATCATTTTTTAAAATTACT+AGG - chr5_4:29585020-29585039 None:intergenic 10.0%
!! TCATCTTTATGATTATTAAA+TGG + chr5_4:29583944-29583963 Msa0847470:intron 15.0%
!!! TTTTTTCTTTGTAATTGTTA+TGG + chr5_4:29585145-29585164 Msa0847470:intron 15.0%
!! AATATATTTGAATTTAAACG+TGG - chr5_4:29586555-29586574 None:intergenic 15.0%
!! TAATTACAATAACATAGAAG+CGG + chr5_4:29582974-29582993 Msa0847470:CDS 20.0%
!!! AAATTACAGTTTTTTGACTT+GGG - chr5_4:29583133-29583152 None:intergenic 20.0%
!!! TATATTTTTCTCATTTGAAG+CGG - chr5_4:29583557-29583576 None:intergenic 20.0%
!!! ATTGAAGCATTTATAGTTTT+AGG + chr5_4:29583830-29583849 Msa0847470:intron 20.0%
!! ATGATATAATGTGAAACTAT+AGG + chr5_4:29583859-29583878 Msa0847470:intron 20.0%
!!! TTAGCATATTTTTCTTTTCA+TGG - chr5_4:29584004-29584023 None:intergenic 20.0%
!! ACATCACACTTATAAAATTT+AGG - chr5_4:29584321-29584340 None:intergenic 20.0%
!!! TATCCTCCTTTATTTAAATT+TGG + chr5_4:29585560-29585579 Msa0847470:intron 20.0%
!! AGAATGTAAAATATTAAGTG+AGG - chr5_4:29585950-29585969 None:intergenic 20.0%
!! AATATTATGCTACAATCTTT+GGG + chr5_4:29585982-29586001 Msa0847470:intron 20.0%
!!! TATTTTGAGACAACTATTTT+AGG + chr5_4:29586330-29586349 Msa0847470:intron 20.0%
!! ATGCTGATGAAAAATTAAAT+AGG + chr5_4:29586378-29586397 Msa0847470:intron 20.0%
!! TGCTGATGAAAAATTAAATA+GGG + chr5_4:29586379-29586398 Msa0847470:intron 20.0%
!! CACTAGATTAATTATATAGT+CGG + chr5_4:29586893-29586912 Msa0847470:exon 20.0%
!! TATGATGATGTAGAAATCAT+AGG + chr5_4:29582459-29582478 Msa0847470:CDS 25.0%
! AGAAATCGTTATGGTTTATA+TGG + chr5_4:29582816-29582835 Msa0847470:CDS 25.0%
! GAAATCGTTATGGTTTATAT+GGG + chr5_4:29582817-29582836 Msa0847470:CDS 25.0%
!!! GAAATTACAGTTTTTTGACT+TGG - chr5_4:29583134-29583153 None:intergenic 25.0%
!! AAATTAGAGTTTTCAGAGTT+GGG - chr5_4:29583259-29583278 None:intergenic 25.0%
! GAAAACTCTAATTTCTGTAA+CGG + chr5_4:29583265-29583284 Msa0847470:CDS 25.0%
!! ATTTCTGAAGAGAATTCTAA+TGG + chr5_4:29583460-29583479 Msa0847470:CDS 25.0%
! TGATTTATACAAAAAAGCCA+TGG + chr5_4:29583606-29583625 Msa0847470:CDS 25.0%
! TAAATACACATGCATTTACA+AGG - chr5_4:29583786-29583805 None:intergenic 25.0%
! TTATTAAATGGATATGTGTG+TGG + chr5_4:29583956-29583975 Msa0847470:intron 25.0%
! TATTAAATGGATATGTGTGT+GGG + chr5_4:29583957-29583976 Msa0847470:intron 25.0%
!! ATTTTTCATCTATCTGCTAA+AGG - chr5_4:29584185-29584204 None:intergenic 25.0%
! TTACATACATTAGTAATAGG+AGG - chr5_4:29584281-29584300 None:intergenic 25.0%
! CACTTACATACATTAGTAAT+AGG - chr5_4:29584284-29584303 None:intergenic 25.0%
! AAATTTAGGCCTAAATTACA+AGG - chr5_4:29584307-29584326 None:intergenic 25.0%
! AATATCCAGATGTATAACAT+TGG - chr5_4:29584591-29584610 None:intergenic 25.0%
! GTTATACATCTGGATATTAA+TGG + chr5_4:29584593-29584612 Msa0847470:intron 25.0%
!!! GGTGATGGATTTTTTTTAAA+AGG + chr5_4:29584682-29584701 Msa0847470:intron 25.0%
!! CTCTATCAATTTTCAATCAA+TGG - chr5_4:29584893-29584912 None:intergenic 25.0%
! AAGCAATAACAAGAATACAT+TGG - chr5_4:29585107-29585126 None:intergenic 25.0%
! TACAAGAAACCATAACATAT+TGG - chr5_4:29585175-29585194 None:intergenic 25.0%
! TGGAATAAATTGAAGTCTAT+AGG - chr5_4:29585225-29585244 None:intergenic 25.0%
! AAAAATGCGCAAAAGAAAAA+AGG + chr5_4:29585375-29585394 Msa0847470:CDS 25.0%
! TGCAATTATCTCTTCTAAAT+TGG + chr5_4:29585477-29585496 Msa0847470:intron 25.0%
! AGTCCACCAAATTTAAATAA+AGG - chr5_4:29585569-29585588 None:intergenic 25.0%
!!! TTATTTAAATTTGGTGGACT+TGG + chr5_4:29585569-29585588 Msa0847470:intron 25.0%
! TTAATTCTTTGTCCTGAATT+TGG - chr5_4:29585744-29585763 None:intergenic 25.0%
! CAATATTATGCTACAATCTT+TGG + chr5_4:29585981-29586000 Msa0847470:intron 25.0%
!! TTTAGTAAAGCTTTTGTCAA+AGG - chr5_4:29586111-29586130 None:intergenic 25.0%
! AATTGAATCTGTTACACATT+AGG - chr5_4:29586280-29586299 None:intergenic 25.0%
!! AAATATGATAGGTTGAGTAA+TGG - chr5_4:29586315-29586334 None:intergenic 25.0%
! TAGTTGTCTCAAAATATGAT+AGG - chr5_4:29586326-29586345 None:intergenic 25.0%
! ATGAAAAATTAAATAGGGCT+GGG + chr5_4:29586384-29586403 Msa0847470:intron 25.0%
!!! TCTTTTTTATGTGTGCTATT+AGG - chr5_4:29586446-29586465 None:intergenic 25.0%
! ATTATCCAGCCATTAAATTT+GGG - chr5_4:29587026-29587045 None:intergenic 25.0%
! TATTATCCAGCCATTAAATT+TGG - chr5_4:29587027-29587046 None:intergenic 25.0%
! AAATTTAATGGCTGGATAAT+AGG + chr5_4:29587026-29587045 Msa0847470:three_prime_UTR 25.0%
! TAAAGAACAAGAACATGTAA+AGG + chr5_4:29587050-29587069 Msa0847470:three_prime_UTR 25.0%
! ACATGTAAAGGTTATAACTT+AGG + chr5_4:29587062-29587081 Msa0847470:three_prime_UTR 25.0%
!!! AAATGCCAAATTTTGAAGAT+GGG + chr5_4:29587085-29587104 Msa0847470:three_prime_UTR 25.0%
!! AGAAAACCTTTTGTTTGAAG+AGG - chr5_4:29582646-29582665 None:intergenic 30.0%
GCTAAAGAAAGAAATCGTTA+TGG + chr5_4:29582807-29582826 Msa0847470:CDS 30.0%
ATAACATAGAAGCGGAAAAT+AGG + chr5_4:29582982-29583001 Msa0847470:CDS 30.0%
! AAAATAGGTCTGAAAAGCAT+GGG + chr5_4:29582997-29583016 Msa0847470:CDS 30.0%
AGAAAGGACAACTAAGAAAA+AGG + chr5_4:29583097-29583116 Msa0847470:CDS 30.0%
AACTGTAATTTCTGTAACGA+TGG + chr5_4:29583142-29583161 Msa0847470:intron 30.0%
AATTTCTGTAACGATGGTAT+TGG + chr5_4:29583148-29583167 Msa0847470:intron 30.0%
TTTAAGGATGATATTCAGCA+TGG + chr5_4:29583214-29583233 Msa0847470:CDS 30.0%
! AATTAGAGTTTTCAGAGTTG+GGG - chr5_4:29583258-29583277 None:intergenic 30.0%
! GAAATTAGAGTTTTCAGAGT+TGG - chr5_4:29583260-29583279 None:intergenic 30.0%
! TTTGATGAAAGGCATATCAA+TGG + chr5_4:29583490-29583509 Msa0847470:CDS 30.0%
AAATTCAGGTGATTCACATA+TGG + chr5_4:29583662-29583681 Msa0847470:intron 30.0%
! TGTTATGCCTTTACATGTTT+TGG + chr5_4:29583713-29583732 Msa0847470:intron 30.0%
TAAAGAGCCAAAACATGTAA+AGG - chr5_4:29583723-29583742 None:intergenic 30.0%
TAGTTCTCTTACATGTTGAA+GGG + chr5_4:29583753-29583772 Msa0847470:intron 30.0%
ACTATAGGAGTTTCAAATCA+AGG + chr5_4:29583874-29583893 Msa0847470:intron 30.0%
GAATAACAATAGTAGATCTC+AGG - chr5_4:29583926-29583945 None:intergenic 30.0%
ACTAAATGAGAGAACAAAAC+AGG + chr5_4:29584069-29584088 Msa0847470:intron 30.0%
AACTTAGTGGAACTCAATTT+GGG - chr5_4:29584218-29584237 None:intergenic 30.0%
TAACTTAGTGGAACTCAATT+TGG - chr5_4:29584219-29584238 None:intergenic 30.0%
ATGTAAGTGCCTTGTAATTT+AGG + chr5_4:29584295-29584314 Msa0847470:intron 30.0%
AGAGGTAGTTACAGAAAATA+GGG - chr5_4:29584475-29584494 None:intergenic 30.0%
GATATTATTGATCTTCTCTG+TGG - chr5_4:29584510-29584529 None:intergenic 30.0%
AATTCCATATACGATCAGAA+TGG + chr5_4:29584559-29584578 Msa0847470:intron 30.0%
TAAACCATTCTGATCGTATA+TGG - chr5_4:29584566-29584585 None:intergenic 30.0%
ATATACGATCAGAATGGTTT+AGG + chr5_4:29584565-29584584 Msa0847470:intron 30.0%
AAAGGCTTCAAATTGAGTAA+TGG + chr5_4:29584700-29584719 Msa0847470:intron 30.0%
AAGGCTTCAAATTGAGTAAT+GGG + chr5_4:29584701-29584720 Msa0847470:intron 30.0%
AATACAGAACTTACGCATAA+CGG - chr5_4:29584750-29584769 None:intergenic 30.0%
! TTAGCTTCATTTTCTTTCAG+AGG - chr5_4:29584869-29584888 None:intergenic 30.0%
! TAGCCATTGATTGAAATTGA+TGG + chr5_4:29584952-29584971 Msa0847470:intron 30.0%
CAACCATCAATTTCAATCAA+TGG - chr5_4:29584958-29584977 None:intergenic 30.0%
! TTGATTGAAATTGATGGTTG+AGG + chr5_4:29584958-29584977 Msa0847470:intron 30.0%
CAATAACAAGAATACATTGG+TGG - chr5_4:29585104-29585123 None:intergenic 30.0%
TATGGCTAACCAATATGTTA+TGG + chr5_4:29585163-29585182 Msa0847470:intron 30.0%
CCACCAAATTTAAATAAAGG+AGG - chr5_4:29585566-29585585 None:intergenic 30.0%
! CCTCCTTTATTTAAATTTGG+TGG + chr5_4:29585563-29585582 Msa0847470:intron 30.0%
CATGAAAGAAGACATTCAAA+TGG - chr5_4:29585645-29585664 None:intergenic 30.0%
CAAAGTTCTATGACTAAACT+AGG - chr5_4:29585680-29585699 None:intergenic 30.0%
TGTACTTTAATGCCAAATTC+AGG + chr5_4:29585729-29585748 Msa0847470:intron 30.0%
AAAGAAGAAGCTCAATCATT+TGG + chr5_4:29585795-29585814 Msa0847470:CDS 30.0%
AGGTAGAGAATGATATGATA+TGG - chr5_4:29585930-29585949 None:intergenic 30.0%
TTTCATACAACAGTCATCAA+AGG - chr5_4:29586253-29586272 None:intergenic 30.0%
GATGAAAAATTAAATAGGGC+TGG + chr5_4:29586383-29586402 Msa0847470:intron 30.0%
! ATGTTACACATGAAGCATTT+GGG - chr5_4:29586584-29586603 None:intergenic 30.0%
! TGTCATCTGATCATCATTTT+AGG + chr5_4:29586730-29586749 Msa0847470:intron 30.0%
GATTAATTATATAGTCGGAC+TGG + chr5_4:29586898-29586917 Msa0847470:exon 30.0%
TTATCCAGCCATTAAATTTG+GGG - chr5_4:29587025-29587044 None:intergenic 30.0%
!! GAAATGCCAAATTTTGAAGA+TGG + chr5_4:29587084-29587103 Msa0847470:three_prime_UTR 30.0%
ATTCATCCATTTCGTGTATT+TGG + chr5_4:29587115-29587134 Msa0847470:three_prime_UTR 30.0%
TACTGTCATATGAAAGAACT+AGG + chr5_4:29587148-29587167 Msa0847470:three_prime_UTR 30.0%
ACTGTCATATGAAAGAACTA+GGG + chr5_4:29587149-29587168 Msa0847470:three_prime_UTR 30.0%
TAGAAATCATAGGATCCAGT+GGG + chr5_4:29582469-29582488 Msa0847470:CDS 35.0%
GTCGATGTTCTATCTTTACT+TGG - chr5_4:29582495-29582514 None:intergenic 35.0%
! GTATACGTAGATGTTGATGA+CGG + chr5_4:29582693-29582712 Msa0847470:CDS 35.0%
! AAAATGGTTCTGTTTCGAAG+AGG + chr5_4:29582727-29582746 Msa0847470:CDS 35.0%
CGATTTCTTTCTTTAGCGTT+TGG - chr5_4:29582804-29582823 None:intergenic 35.0%
TGACATGCTCATTAAACACA+CGG - chr5_4:29582932-29582951 None:intergenic 35.0%
GAAAATAGGTCTGAAAAGCA+TGG + chr5_4:29582996-29583015 Msa0847470:CDS 35.0%
CTACAACTAGGACCATATAA+AGG - chr5_4:29583029-29583048 None:intergenic 35.0%
ATATGGTCCTAGTTGTAGTA+AGG + chr5_4:29583031-29583050 Msa0847470:CDS 35.0%
TGATTCTCCTTACTACAACT+AGG - chr5_4:29583041-29583060 None:intergenic 35.0%
ATGATATTCGGAATGGAGAA+AGG + chr5_4:29583081-29583100 Msa0847470:CDS 35.0%
! TGATGACGAGTCTACATTTA+AGG + chr5_4:29583198-29583217 Msa0847470:CDS 35.0%
! GGTTCTTCAAGTTTGAAGAA+AGG + chr5_4:29583295-29583314 Msa0847470:CDS 35.0%
TCAAGTTTGAAGAAAGGACT+AGG + chr5_4:29583301-29583320 Msa0847470:CDS 35.0%
AAATTTATGAGCTCCAACCA+AGG + chr5_4:29583337-29583356 Msa0847470:CDS 35.0%
ACAATGATGAATCTCCATTG+AGG + chr5_4:29583422-29583441 Msa0847470:CDS 35.0%
TTGTCATCTTTACTCCTCAA+TGG - chr5_4:29583439-29583458 None:intergenic 35.0%
GATATGCCTTTCATCAAAAG+AGG - chr5_4:29583488-29583507 None:intergenic 35.0%
ATACAAAAAAGCCATGGAAG+AGG + chr5_4:29583612-29583631 Msa0847470:CDS 35.0%
AATTTGCAATTGTCTCTGTC+TGG - chr5_4:29583647-29583666 None:intergenic 35.0%
ACAGAGACAATTGCAAATTC+AGG + chr5_4:29583648-29583667 Msa0847470:CDS 35.0%
! CATGTAAAGGCATAACAGAA+AGG - chr5_4:29583710-29583729 None:intergenic 35.0%
!!! CATGTTTTGGCTCTTTAAAC+AGG + chr5_4:29583726-29583745 Msa0847470:intron 35.0%
GTAGTTCTCTTACATGTTGA+AGG + chr5_4:29583752-29583771 Msa0847470:intron 35.0%
ATAGGAGTTTCAAATCAAGG+CGG + chr5_4:29583877-29583896 Msa0847470:intron 35.0%
! GGCTCATAAGATTTTCAATG+AGG - chr5_4:29584164-29584183 None:intergenic 35.0%
GAACTCAATTTGGGAACAAT+AGG - chr5_4:29584209-29584228 None:intergenic 35.0%
CTTTGATGCATCTAACTTAG+TGG - chr5_4:29584231-29584250 None:intergenic 35.0%
AAGTTAGATGCATCAAAGTG+TGG + chr5_4:29584233-29584252 Msa0847470:intron 35.0%
!! TTTGTTGAGTGGTTTGGTTT+GGG + chr5_4:29584373-29584392 Msa0847470:intron 35.0%
!! ACTAACATACCTCTAGGATA+TGG - chr5_4:29584411-29584430 None:intergenic 35.0%
GAGGTAGTTACAGAAAATAG+GGG - chr5_4:29584474-29584493 None:intergenic 35.0%
CAGAGGTAGTTACAGAAAAT+AGG - chr5_4:29584476-29584495 None:intergenic 35.0%
! TTTTCTGTAACTACCTCTGT+TGG + chr5_4:29584477-29584496 Msa0847470:intron 35.0%
TTAGGCCAATGTTATACATC+TGG + chr5_4:29584583-29584602 Msa0847470:intron 35.0%
! ATCTGGATATTAATGGACGA+AGG + chr5_4:29584600-29584619 Msa0847470:intron 35.0%
CTGAGTTTATGTTCTCATGA+AGG + chr5_4:29584661-29584680 Msa0847470:intron 35.0%
TTATGTTCTCATGAAGGTGA+TGG + chr5_4:29584667-29584686 Msa0847470:intron 35.0%
AGGCTTCAAATTGAGTAATG+GGG + chr5_4:29584702-29584721 Msa0847470:intron 35.0%
TCTGTATTGTACCTACAAGT+CGG + chr5_4:29584762-29584781 Msa0847470:intron 35.0%
ACCAACTATTTCCACAGTTT+GGG - chr5_4:29584793-29584812 None:intergenic 35.0%
AACCAACTATTTCCACAGTT+TGG - chr5_4:29584794-29584813 None:intergenic 35.0%
! ATAGTTGGTTTCACCAACAT+AGG + chr5_4:29584804-29584823 Msa0847470:intron 35.0%
! TTGTAGAATTTTCCTCAGAC+TGG - chr5_4:29584834-29584853 None:intergenic 35.0%
ATTGATAGAGTGAACCATGA+CGG + chr5_4:29584903-29584922 Msa0847470:intron 35.0%
AACAAAGCTTAGTGAAAGAG+CGG - chr5_4:29585276-29585295 None:intergenic 35.0%
GTATGCGTATTCTCAGTTTA+CGG - chr5_4:29585336-29585355 None:intergenic 35.0%
TTCTTTCAATGTCCAGCAAT+CGG - chr5_4:29585411-29585430 None:intergenic 35.0%
TGAACACGAAAGATGAAATG+CGG + chr5_4:29585764-29585783 Msa0847470:CDS 35.0%
GAAGGAAAGCGATTTAATAG+TGG - chr5_4:29586185-29586204 None:intergenic 35.0%
ATCAAAGGAAGGATGATTAG+TGG - chr5_4:29586238-29586257 None:intergenic 35.0%
ATACAACAGTCATCAAAGGA+AGG - chr5_4:29586249-29586268 None:intergenic 35.0%
! TATGATAGGTTGAGTAATGG+AGG - chr5_4:29586312-29586331 None:intergenic 35.0%
AAAAATTAAATAGGGCTGGG+AGG + chr5_4:29586387-29586406 Msa0847470:intron 35.0%
AGTTTACAATACCACCATAC+TGG - chr5_4:29586417-29586436 None:intergenic 35.0%
GTATGGTGGTATTGTAAACT+CGG + chr5_4:29586417-29586436 Msa0847470:intron 35.0%
AGACATTATCCTTACGAGAA+AGG + chr5_4:29586463-29586482 Msa0847470:intron 35.0%
GACATTATCCTTACGAGAAA+GGG + chr5_4:29586464-29586483 Msa0847470:intron 35.0%
! TGTTACACATGAAGCATTTG+GGG - chr5_4:29586583-29586602 None:intergenic 35.0%
! GATGTTACACATGAAGCATT+TGG - chr5_4:29586585-29586604 None:intergenic 35.0%
AATGAACTCAACCTTGAGAA+GGG - chr5_4:29586619-29586638 None:intergenic 35.0%
AAATGAACTCAACCTTGAGA+AGG - chr5_4:29586620-29586639 None:intergenic 35.0%
GTAGCTCACAAATTTATTGC+AGG - chr5_4:29586653-29586672 None:intergenic 35.0%
CTTAAGCATAGCCTGTTTAT+AGG - chr5_4:29586765-29586784 None:intergenic 35.0%
!!! AGAAGTTTTGTTCGACTTCA+TGG + chr5_4:29586870-29586889 Msa0847470:CDS 35.0%
! TTATATAGTCGGACTGGATA+TGG + chr5_4:29586904-29586923 Msa0847470:three_prime_UTR 35.0%
CATTAAATTTGGGGGAAAGT+AGG - chr5_4:29587016-29587035 None:intergenic 35.0%
CTACTTTCCCCCAAATTTAA+TGG + chr5_4:29587014-29587033 Msa0847470:three_prime_UTR 35.0%
TATCCAGCCATTAAATTTGG+GGG - chr5_4:29587024-29587043 None:intergenic 35.0%
TACAGCCCATCTTCAAAATT+TGG - chr5_4:29587093-29587112 None:intergenic 35.0%
GTACTACCAAATACACGAAA+TGG - chr5_4:29587124-29587143 None:intergenic 35.0%
CTGTCATATGAAAGAACTAG+GGG + chr5_4:29587150-29587169 Msa0847470:three_prime_UTR 35.0%
AGCAAAAGGGATTGAAACAA+AGG + chr5_4:29587175-29587194 Msa0847470:three_prime_UTR 35.0%
GCAAAAGGGATTGAAACAAA+GGG + chr5_4:29587176-29587195 Msa0847470:three_prime_UTR 35.0%
GTAGAAATCATAGGATCCAG+TGG + chr5_4:29582468-29582487 Msa0847470:CDS 40.0%
TCAATGCTGATAACACTCTG+AGG - chr5_4:29582519-29582538 None:intergenic 40.0%
! CGATGATGAAAGTGATGATG+TGG + chr5_4:29582572-29582591 Msa0847470:CDS 40.0%
! CAGTCTGGAATTGATGTTGA+TGG + chr5_4:29582597-29582616 Msa0847470:CDS 40.0%
!! GGAATTGATGTTGATGGTGT+TGG + chr5_4:29582603-29582622 Msa0847470:CDS 40.0%
TACGTATACAGATTTCCACG+CGG - chr5_4:29582682-29582701 None:intergenic 40.0%
GACGGTGATGTCTATGAAAA+TGG + chr5_4:29582711-29582730 Msa0847470:CDS 40.0%
TAGCGATTGTTCTGATTGTG+AGG + chr5_4:29582860-29582879 Msa0847470:CDS 40.0%
AGGTCATAAAACGTGAACAG+TGG + chr5_4:29582880-29582899 Msa0847470:CDS 40.0%
GGTCATAAAACGTGAACAGT+GGG + chr5_4:29582881-29582900 Msa0847470:CDS 40.0%
AGAGGATACCGCAATGAAAA+AGG + chr5_4:29582905-29582924 Msa0847470:CDS 40.0%
GAGGATACCGCAATGAAAAA+GGG + chr5_4:29582906-29582925 Msa0847470:CDS 40.0%
AATGAGCATGTCAGTTCTTC+TGG + chr5_4:29582939-29582958 Msa0847470:CDS 40.0%
CATGGGAAAGGTCCTTTATA+TGG + chr5_4:29583014-29583033 Msa0847470:CDS 40.0%
GAGAATCAATCTTCCTTCAC+TGG + chr5_4:29583053-29583072 Msa0847470:CDS 40.0%
AATATCATCCTCACCAGTGA+AGG - chr5_4:29583069-29583088 None:intergenic 40.0%
TCACTGGTGAGGATGATATT+CGG + chr5_4:29583069-29583088 Msa0847470:CDS 40.0%
!!! ACAGTTTTTTGACTTGGGCA+GGG - chr5_4:29583128-29583147 None:intergenic 40.0%
!!! TACAGTTTTTTGACTTGGGC+AGG - chr5_4:29583129-29583148 None:intergenic 40.0%
!! GTATTGGTTCTTCAAAGTCC+AGG + chr5_4:29583164-29583183 Msa0847470:intron 40.0%
TTCAAAGTCCAGGAATGAAC+TGG + chr5_4:29583174-29583193 Msa0847470:intron 40.0%
TCAAAGTCCAGGAATGAACT+GGG + chr5_4:29583175-29583194 Msa0847470:intron 40.0%
!! AATTTCTGTAACGGTGTTGC+TGG + chr5_4:29583274-29583293 Msa0847470:CDS 40.0%
TCTCCATTGAATGCACATGA+CGG + chr5_4:29583391-29583410 Msa0847470:CDS 40.0%
! ATGGTGCCTCTTTTGATGAA+AGG + chr5_4:29583479-29583498 Msa0847470:CDS 40.0%
AAAAGCCATGGAAGAGGAAA+TGG + chr5_4:29583618-29583637 Msa0847470:CDS 40.0%
TACACATGCATTTACAAGGC+AGG - chr5_4:29583782-29583801 None:intergenic 40.0%
TAGGAGTTTCAAATCAAGGC+GGG + chr5_4:29583878-29583897 Msa0847470:intron 40.0%
GGTTTCTCCAATAGATACGA+GGG - chr5_4:29584143-29584162 None:intergenic 40.0%
AGGTTTCTCCAATAGATACG+AGG - chr5_4:29584144-29584163 None:intergenic 40.0%
!! GAACAAGAAAGCACCTCATT+CGG + chr5_4:29584350-29584369 Msa0847470:intron 40.0%
!! ATTCGGTTTGTTGAGTGGTT+TGG + chr5_4:29584367-29584386 Msa0847470:intron 40.0%
!! GTTTGTTGAGTGGTTTGGTT+TGG + chr5_4:29584372-29584391 Msa0847470:intron 40.0%
CAGGAAACTAACATACCTCT+AGG - chr5_4:29584417-29584436 None:intergenic 40.0%
AAACTGACACAAACTGCAGA+TGG - chr5_4:29584446-29584465 None:intergenic 40.0%
! ATATTAATGGACGAAGGTGC+TGG + chr5_4:29584606-29584625 Msa0847470:intron 40.0%
GGCTTCAAATTGAGTAATGG+GGG + chr5_4:29584703-29584722 Msa0847470:intron 40.0%
ATTGTACCTACAAGTCGGTA+TGG + chr5_4:29584767-29584786 Msa0847470:intron 40.0%
TTGGTTTCACCAACATAGGA+TGG + chr5_4:29584808-29584827 Msa0847470:intron 40.0%
ACAATTATCACCCACTGCAA+TGG + chr5_4:29584987-29585006 Msa0847470:intron 40.0%
CAATTATCACCCACTGCAAT+GGG + chr5_4:29584988-29585007 Msa0847470:intron 40.0%
ACTGAGAATACGCATACTAC+AGG + chr5_4:29585339-29585358 Msa0847470:intron 40.0%
GATTGCTGGACATTGAAAGA+AGG + chr5_4:29585410-29585429 Msa0847470:CDS 40.0%
AGTGAGAGAGACACTAAAGA+AGG + chr5_4:29585453-29585472 Msa0847470:CDS 40.0%
GAACACGAAAGATGAAATGC+GGG + chr5_4:29585765-29585784 Msa0847470:CDS 40.0%
TAAACACAACTTGCCTCCTT+TGG - chr5_4:29585895-29585914 None:intergenic 40.0%
AGAAGGGGATGGAATAAAGT+GGG + chr5_4:29586489-29586508 Msa0847470:intron 40.0%
ATGAACTCAACCTTGAGAAG+GGG - chr5_4:29586618-29586637 None:intergenic 40.0%
GAGCATGAACACAGAACAAT+AGG - chr5_4:29586699-29586718 None:intergenic 40.0%
! TTTTTGATGCACGATCTGGA+TGG - chr5_4:29586790-29586809 None:intergenic 40.0%
! TCAGTTTTTGATGCACGATC+TGG - chr5_4:29586794-29586813 None:intergenic 40.0%
TTTCCCCCAAATTTAATGGC+TGG + chr5_4:29587018-29587037 Msa0847470:three_prime_UTR 40.0%
TCTTCCCCGAAGAACATGTT+CGG - chr5_4:29582368-29582387 None:intergenic 45.0%
GGGAAGAATGCATCCAAAAC+TGG + chr5_4:29582381-29582400 Msa0847470:CDS 45.0%
GAATGCATCCAAAACTGGTC+AGG + chr5_4:29582386-29582405 Msa0847470:CDS 45.0%
TCTATCTTTACTTGGCCCAC+TGG - chr5_4:29582487-29582506 None:intergenic 45.0%
! AGTGATGATGTGGATCAGTC+TGG + chr5_4:29582582-29582601 Msa0847470:CDS 45.0%
!! TGTTGATGGTGTTGGAGAGT+TGG + chr5_4:29582611-29582630 Msa0847470:CDS 45.0%
GCGATGCCTCTTCAAACAAA+AGG + chr5_4:29582637-29582656 Msa0847470:CDS 45.0%
AAGCTTCTGCTTCTAACGTG+CGG + chr5_4:29582763-29582782 Msa0847470:CDS 45.0%
AAAACGTGAACAGTGGGAAG+AGG + chr5_4:29582887-29582906 Msa0847470:CDS 45.0%
! AGGTCTGAAAAGCATGGGAA+AGG + chr5_4:29583002-29583021 Msa0847470:CDS 45.0%
TCAATCTTCCTTCACTGGTG+AGG + chr5_4:29583058-29583077 Msa0847470:CDS 45.0%
GGTGAGGATGATATTCGGAA+TGG + chr5_4:29583074-29583093 Msa0847470:CDS 45.0%
TGTCCGTCATGTGCATTCAA+TGG - chr5_4:29583397-29583416 None:intergenic 45.0%
GCGAATACCCTCGTATCTAT+TGG + chr5_4:29584133-29584152 Msa0847470:intron 45.0%
!! ACCTCATTCGGTTTGTTGAG+TGG + chr5_4:29584362-29584381 Msa0847470:intron 45.0%
ACCACTCAACAAACCGAATG+AGG - chr5_4:29584366-29584385 None:intergenic 45.0%
AAACTGCAGATGGTAACTGC+AGG - chr5_4:29584436-29584455 None:intergenic 45.0%
CTGTGGAAACTTTCCAACAG+AGG - chr5_4:29584493-29584512 None:intergenic 45.0%
GCCCAAACTGTGGAAATAGT+TGG + chr5_4:29584789-29584808 Msa0847470:intron 45.0%
!! TCTTTCAGAGGTGCTCAACA+AGG - chr5_4:29584857-29584876 None:intergenic 45.0%
! ATAGAGTGAACCATGACGGA+AGG + chr5_4:29584907-29584926 Msa0847470:intron 45.0%
GTTAGCAGTAAGCACTTGCA+TGG - chr5_4:29585245-29585264 None:intergenic 45.0%
AATACGCATACTACAGGCAG+AGG + chr5_4:29585345-29585364 Msa0847470:intron 45.0%
GTGTCTCTCTCACTTCTTCA+AGG - chr5_4:29585447-29585466 None:intergenic 45.0%
AGTATATCCCCTCACTTCAG+AGG + chr5_4:29585601-29585620 Msa0847470:intron 45.0%
!! ATCTAGCTCCTCTGAAGTGA+GGG - chr5_4:29585612-29585631 None:intergenic 45.0%
TCGTGGCTTAGGAGTAAATG+TGG + chr5_4:29585849-29585868 Msa0847470:CDS 45.0%
CGTGGCTTAGGAGTAAATGT+GGG + chr5_4:29585850-29585869 Msa0847470:CDS 45.0%
GTGGCTTAGGAGTAAATGTG+GGG + chr5_4:29585851-29585870 Msa0847470:CDS 45.0%
TGGCTTAGGAGTAAATGTGG+GGG + chr5_4:29585852-29585871 Msa0847470:CDS 45.0%
AAGTCTTAGACCTTCGCCAA+AGG + chr5_4:29585876-29585895 Msa0847470:CDS 45.0%
CTTACGAGAAAGGGAGAGAA+GGG + chr5_4:29586473-29586492 Msa0847470:intron 45.0%
TTACGAGAAAGGGAGAGAAG+GGG + chr5_4:29586474-29586493 Msa0847470:intron 45.0%
GAGAAGGGGATGGAATAAAG+TGG + chr5_4:29586488-29586507 Msa0847470:intron 45.0%
GAAGGGGATGGAATAAAGTG+GGG + chr5_4:29586490-29586509 Msa0847470:intron 45.0%
GGTGCATACTGCCTATAAAC+AGG + chr5_4:29586751-29586770 Msa0847470:intron 45.0%
AAAAACTGACATTCGCGAGC+AGG + chr5_4:29586805-29586824 Msa0847470:CDS 45.0%
CAAGCTCATCTCACGTATGA+AGG + chr5_4:29586847-29586866 Msa0847470:CDS 45.0%
! AAGAACTAGGGGCTAGCAAA+AGG + chr5_4:29587161-29587180 Msa0847470:three_prime_UTR 45.0%
! AGAACTAGGGGCTAGCAAAA+GGG + chr5_4:29587162-29587181 Msa0847470:three_prime_UTR 45.0%
!!! AATTTTAAAAAATGATAAAA+TGG + chr5_4:29585023-29585042 Msa0847470:intron 5.0%
TCAGCCCCGAACATGTTCTT+CGG + chr5_4:29582359-29582378 Msa0847470:CDS 50.0%
TTCCCCGAAGAACATGTTCG+GGG - chr5_4:29582366-29582385 None:intergenic 50.0%
CTTCCCCGAAGAACATGTTC+GGG - chr5_4:29582367-29582386 None:intergenic 50.0%
TCCAAAACTGGTCAGGCGAA+AGG + chr5_4:29582393-29582412 Msa0847470:CDS 50.0%
CCAAAACTGGTCAGGCGAAA+GGG + chr5_4:29582394-29582413 Msa0847470:CDS 50.0%
CAAAACTGGTCAGGCGAAAG+GGG + chr5_4:29582395-29582414 Msa0847470:CDS 50.0%
GATTTCCACGCGGAACTTGA+GGG - chr5_4:29582672-29582691 None:intergenic 50.0%
AGATTTCCACGCGGAACTTG+AGG - chr5_4:29582673-29582692 None:intergenic 50.0%
!! CACACGGCCCTTTTTCATTG+CGG - chr5_4:29582916-29582935 None:intergenic 50.0%
GTCATCACCCAGTTCATTCC+TGG - chr5_4:29583185-29583204 None:intergenic 50.0%
! AGAGTTTTCAGAGTTGGGGC+AGG - chr5_4:29583254-29583273 None:intergenic 50.0%
CATGTCATGTGCACCTTGGT+TGG - chr5_4:29583353-29583372 None:intergenic 50.0%
CTTGCATGTCATGTGCACCT+TGG - chr5_4:29583357-29583376 None:intergenic 50.0%
! GGATGCCATTTCCTCTTCCA+TGG - chr5_4:29583626-29583645 None:intergenic 50.0%
!! GTGGTTTGGTTTGGGAGAGT+AGG + chr5_4:29584381-29584400 Msa0847470:intron 50.0%
GTAGGCTCTCCATATCCTAG+AGG + chr5_4:29584399-29584418 Msa0847470:intron 50.0%
!!! CGAAGGTGCTGGAGATGTTT+TGG + chr5_4:29584617-29584636 Msa0847470:intron 50.0%
! GGGGGATAGCGATTTAGAAC+AGG + chr5_4:29584721-29584740 Msa0847470:intron 50.0%
!! TTTGGGCCATACCGACTTGT+AGG - chr5_4:29584776-29584795 None:intergenic 50.0%
! TCAGACTGGCCATCCTATGT+TGG - chr5_4:29584820-29584839 None:intergenic 50.0%
AACATAGGATGGCCAGTCTG+AGG + chr5_4:29584819-29584838 Msa0847470:intron 50.0%
GTCACTATCTCCTTCCGTCA+TGG - chr5_4:29584920-29584939 None:intergenic 50.0%
!! TCTAGCTCCTCTGAAGTGAG+GGG - chr5_4:29585611-29585630 None:intergenic 50.0%
!! GATCTAGCTCCTCTGAAGTG+AGG - chr5_4:29585613-29585632 None:intergenic 50.0%
GATATGACCTCACTGCTTCG+TGG + chr5_4:29585832-29585851 Msa0847470:CDS 50.0%
TCTTAGACCTTCGCCAAAGG+AGG + chr5_4:29585879-29585898 Msa0847470:CDS 50.0%
CCTTCTCTCCCTTTCTCGTA+AGG - chr5_4:29586475-29586494 None:intergenic 50.0%
CCTTACGAGAAAGGGAGAGA+AGG + chr5_4:29586472-29586491 Msa0847470:intron 50.0%
TTGATGTCGTCCCCTTCTCA+AGG + chr5_4:29586605-29586624 Msa0847470:intron 50.0%
CAGCCCCGAACATGTTCTTC+GGG + chr5_4:29582360-29582379 Msa0847470:CDS 55.0%
AGCCCCGAACATGTTCTTCG+GGG + chr5_4:29582361-29582380 Msa0847470:CDS 55.0%
! CCCTTTCGCCTGACCAGTTT+TGG - chr5_4:29582397-29582416 None:intergenic 55.0%
AGTCGGTATGGCCCAAACTG+TGG + chr5_4:29584779-29584798 Msa0847470:intron 55.0%
AGGCTGAAGCCCATTGCAGT+GGG - chr5_4:29585000-29585019 None:intergenic 55.0%
TAGGCTGAAGCCCATTGCAG+TGG - chr5_4:29585001-29585020 None:intergenic 55.0%
GGCTGAGAATAGCCGATTGC+TGG + chr5_4:29585396-29585415 Msa0847470:CDS 55.0%
ACCTCACTGCTTCGTGGCTT+AGG + chr5_4:29585838-29585857 Msa0847470:CDS 55.0%
TCCTAAGCCACGAAGCAGTG+AGG - chr5_4:29585842-29585861 None:intergenic 55.0%
CAACTTGCCTCCTTTGGCGA+AGG - chr5_4:29585889-29585908 None:intergenic 55.0%
GCTTTCCTTCGCTGATGCTG+TGG + chr5_4:29586195-29586214 Msa0847470:intron 55.0%
AGCATCCACAGCATCAGCGA+AGG - chr5_4:29586203-29586222 None:intergenic 55.0%
TGGGAGGTGAACCAGTATGG+TGG + chr5_4:29586403-29586422 Msa0847470:intron 55.0%
GAGAAAGGGAGAGAAGGGGA+TGG + chr5_4:29586478-29586497 Msa0847470:intron 55.0%
TGACATTCGCGAGCAGGTTG+AGG + chr5_4:29586811-29586830 Msa0847470:CDS 55.0%
CTATGCCCTCAAGTTCCGCG+TGG + chr5_4:29582664-29582683 Msa0847470:CDS 60.0%
GGCTGGGAGGTGAACCAGTA+TGG + chr5_4:29586400-29586419 Msa0847470:intron 60.0%
! TCGCGAGCAGGTTGAGGCTG+AGG + chr5_4:29586817-29586836 Msa0847470:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 29582327 29587219 29582327 ID=Msa0847470;Name=Msa0847470
chr5_4 mRNA 29582327 29587219 29582327 ID=Msa0847470-mRNA-1;Parent=Msa0847470;Name=Msa0847470-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.75|0.6|1|1|1|5|321|563
chr5_4 exon 29582327 29583118 29582327 ID=Msa0847470-mRNA-1:exon:10927;Parent=Msa0847470-mRNA-1
chr5_4 exon 29583181 29583669 29583181 ID=Msa0847470-mRNA-1:exon:10928;Parent=Msa0847470-mRNA-1
chr5_4 exon 29585361 29585474 29585361 ID=Msa0847470-mRNA-1:exon:10929;Parent=Msa0847470-mRNA-1
chr5_4 exon 29585751 29585900 29585751 ID=Msa0847470-mRNA-1:exon:10930;Parent=Msa0847470-mRNA-1
chr5_4 exon 29586752 29587219 29586752 ID=Msa0847470-mRNA-1:exon:10931;Parent=Msa0847470-mRNA-1
chr5_4 CDS 29582327 29583118 29582327 ID=Msa0847470-mRNA-1:cds;Parent=Msa0847470-mRNA-1
chr5_4 CDS 29583181 29583669 29583181 ID=Msa0847470-mRNA-1:cds;Parent=Msa0847470-mRNA-1
chr5_4 CDS 29585361 29585474 29585361 ID=Msa0847470-mRNA-1:cds;Parent=Msa0847470-mRNA-1
chr5_4 CDS 29585751 29585900 29585751 ID=Msa0847470-mRNA-1:cds;Parent=Msa0847470-mRNA-1
chr5_4 CDS 29586752 29586898 29586752 ID=Msa0847470-mRNA-1:cds;Parent=Msa0847470-mRNA-1
chr5_4 three_prime_UTR 29586899 29587219 29586899 ID=Msa0847470-mRNA-1:three_prime_utr;Parent=Msa0847470-mRNA-1
Gene Sequence

>Msa0847470

ATGCTTGGAAAAGGTGTTTCGAGAGAACATTTTCAGCCCCGAACATGTTCTTCGGGGAAGAATGCATCCAAAACTGGTCAGGCGAAAGGGGATTTAGAGAATATTGTTTTCATTGACTTAGATAATGATCAATATGATGATGTAGAAATCATAGGATCCAGTGGGCCAAGTAAAGATAGAACATCGACACCTCAGAGTGTTATCAGCATTGACGACGACGACGACGACGACGATGATGATGACGACGATGATGAAAGTGATGATGTGGATCAGTCTGGAATTGATGTTGATGGTGTTGGAGAGTTGGATAGCGATGCCTCTTCAAACAAAAGGTTTTCTATGCCCTCAAGTTCCGCGTGGAAATCTGTATACGTAGATGTTGATGACGGTGATGTCTATGAAAATGGTTCTGTTTCGAAGAGGCAAAAAAGTAATAAAGCTTCTGCTTCTAACGTGCGGAAGAAAGTATTCTCTCCAAACGCTAAAGAAAGAAATCGTTATGGTTTATATGGGTCTGAAAGTGACTCATCTGATAGCGATTGTTCTGATTGTGAGGTCATAAAACGTGAACAGTGGGAAGAGGATACCGCAATGAAAAAGGGCCGTGTGTTTAATGAGCATGTCAGTTCTTCTGGTTTACATACAAATAATTACAATAACATAGAAGCGGAAAATAGGTCTGAAAAGCATGGGAAAGGTCCTTTATATGGTCCTAGTTGTAGTAAGGAGAATCAATCTTCCTTCACTGGTGAGGATGATATTCGGAATGGAGAAAGGACAACTAAGAAAAAGTCCAGGAATGAACTGGGTGATGACGAGTCTACATTTAAGGATGATATTCAGCATGGAGAAAAAGTTTCTGCCTGCCCCAACTCTGAAAACTCTAATTTCTGTAACGGTGTTGCTGGTTCTTCAAGTTTGAAGAAAGGACTAGGTGATAAAGAGTCTAAATTTATGAGCTCCAACCAAGGTGCACATGACATGCAAGTTGACGATGATGAATCTCCATTGAATGCACATGACGGACAAGTTGACAATGATGAATCTCCATTGAGGAGTAAAGATGACAATATTTCTGAAGAGAATTCTAATGGTGCCTCTTTTGATGAAAGGCATATCAATGGTCATGATGAGCTTGCTTTACATACTCAAGATGCTGATCTTACCGCTTCAAATGAGAAAAATATAATTAATCAAAAAGAAAAGCATAAGCAAACTGATTTATACAAAAAAGCCATGGAAGAGGAAATGGCATCCAGACAGAGACAATTGCAAATTCAGGCAGAGGAAGCACAAAAAATGCGCAAAAGAAAAAAGGCTGAGAATAGCCGATTGCTGGACATTGAAAGAAGGTCAAAAGAACGCCTTGAAGAAGTGAGAGAGACACTAAAGAAGGACAAAGAATTAATGAACACGAAAGATGAAATGCGGGTCGAAATAAAGAAGAAGCTCAATCATTTGGAGAATCAATGCATAGATATGACCTCACTGCTTCGTGGCTTAGGAGTAAATGTGGGGGCAAGTCTTAGACCTTCGCCAAAGGAGGTGCATACTGCCTATAAACAGGCTATGCTTAAGTTCCATCCAGATCGTGCATCAAAAACTGACATTCGCGAGCAGGTTGAGGCTGAGGAGACGTGCAAGCTCATCTCACGTATGAAGGAGAAGTTTTGTTCGACTTCATGGCACTAG

Protein sequence

>Msa0847470

MLGKGVSREHFQPRTCSSGKNASKTGQAKGDLENIVFIDLDNDQYDDVEIIGSSGPSKDRTSTPQSVISIDDDDDDDDDDDDDDESDDVDQSGIDVDGVGELDSDASSNKRFSMPSSSAWKSVYVDVDDGDVYENGSVSKRQKSNKASASNVRKKVFSPNAKERNRYGLYGSESDSSDSDCSDCEVIKREQWEEDTAMKKGRVFNEHVSSSGLHTNNYNNIEAENRSEKHGKGPLYGPSCSKENQSSFTGEDDIRNGERTTKKKSRNELGDDESTFKDDIQHGEKVSACPNSENSNFCNGVAGSSSLKKGLGDKESKFMSSNQGAHDMQVDDDESPLNAHDGQVDNDESPLRSKDDNISEENSNGASFDERHINGHDELALHTQDADLTASNEKNIINQKEKHKQTDLYKKAMEEEMASRQRQLQIQAEEAQKMRKRKKAENSRLLDIERRSKERLEEVRETLKKDKELMNTKDEMRVEIKKKLNHLENQCIDMTSLLRGLGVNVGASLRPSPKEVHTAYKQAMLKFHPDRASKTDIREQVEAEETCKLISRMKEKFCSTSWH*