AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0803010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803010 MtrunA17_Chr2g0282761 94.721 341 13 2 1 336 1 341 0.0 664
Msa0803010 MtrunA17_Chr2g0282741 68.047 338 92 7 1 331 1 329 8.44e-148 419
Msa0803010 MtrunA17_Chr4g0040501 64.706 340 111 6 1 334 1 337 7.11e-142 405
Msa0803010 MtrunA17_Chr4g0006391 60.767 339 121 5 1 334 1 332 7.26e-134 384
Msa0803010 MtrunA17_Chr2g0324921 58.601 343 118 6 1 334 1 328 7.74e-130 374
Msa0803010 MtrunA17_Chr3g0138471 50.602 332 147 6 1 331 1 316 3.61e-104 308
Msa0803010 MtrunA17_Chr3g0093111 39.884 346 152 8 3 334 1 304 6.12e-74 231
Msa0803010 MtrunA17_Chr5g0415751 50.758 132 62 1 200 331 23 151 7.41e-44 148
Msa0803010 MtrunA17_Chr8g0334811 31.897 348 197 11 5 327 15 347 2.10e-38 141
Msa0803010 MtrunA17_Chr2g0277721 44.000 175 93 3 159 331 79 250 4.31e-38 136
Msa0803010 MtrunA17_Chr3g0124801 42.353 170 93 4 159 326 111 277 1.67e-36 133
Msa0803010 MtrunA17_Chr7g0269841 30.267 337 204 9 5 335 27 338 7.39e-34 127
Msa0803010 MtrunA17_Chr3g0123861 26.197 355 216 13 4 331 82 417 1.77e-21 94.7
Msa0803010 MtrunA17_Chr6g0478651 41.772 158 67 7 2 153 66 204 5.34e-21 93.6
Msa0803010 MtrunA17_Chr3g0091351 40.404 99 56 1 223 321 2 97 6.68e-21 86.3
Msa0803010 MtrunA17_Chr2g0322181 27.962 211 127 5 120 328 159 346 7.58e-20 89.7
Msa0803010 MtrunA17_Chr2g0322181 60.563 71 23 1 5 75 14 79 2.06e-12 67.8
Msa0803010 MtrunA17_Chr7g0263971 58.824 68 28 0 4 71 369 436 9.84e-20 89.7
Msa0803010 MtrunA17_Chr4g0025401 29.577 213 121 6 120 328 157 344 1.10e-19 89.4
Msa0803010 MtrunA17_Chr4g0025401 59.155 71 24 1 5 75 14 79 3.75e-11 63.9
Msa0803010 MtrunA17_Chr5g0415731 55.556 72 25 1 4 68 5 76 1.60e-18 80.9
Msa0803010 MtrunA17_Chr3g0091361 50.685 73 36 0 3 75 4 76 2.45e-17 79.3
Msa0803010 MtrunA17_Chr2g0333221 53.012 83 35 2 4 86 70 148 5.96e-17 81.6
Msa0803010 MtrunA17_Chr5g0427221 56.250 64 27 1 4 67 48 110 2.23e-16 75.1
Msa0803010 MtrunA17_Chr4g0021141 53.125 64 29 1 4 67 22 84 4.04e-16 73.9
Msa0803010 MtrunA17_Chr1g0159491 45.946 74 39 1 3 76 5 77 6.55e-16 72.0
Msa0803010 MtrunA17_Chr7g0271891 48.485 66 31 1 5 67 17 82 1.35e-15 73.6
Msa0803010 MtrunA17_Chr8g0344721 47.826 69 31 1 4 67 10 78 2.95e-15 74.3
Msa0803010 MtrunA17_Chr4g0044331 51.667 60 26 1 11 67 19 78 2.59e-14 69.7
Msa0803010 MtrunA17_Chr3g0087741 49.315 73 36 1 4 76 89 160 5.75e-14 72.4
Msa0803010 MtrunA17_Chr5g0399201 44.156 77 41 1 4 78 12 88 5.86e-14 72.8
Msa0803010 MtrunA17_Chr5g0426951 40.000 115 53 4 4 112 83 187 6.53e-14 72.4
Msa0803010 MtrunA17_Chr1g0209551 53.125 64 29 1 4 67 16 78 6.71e-14 72.0
Msa0803010 MtrunA17_Chr6g0460461 44.928 69 34 1 3 67 1 69 1.79e-13 68.9
Msa0803010 MtrunA17_Chr3g0132971 49.254 67 31 2 3 68 68 132 2.25e-13 68.6
Msa0803010 MtrunA17_Chr6g0460411 44.928 69 34 1 3 67 1 69 3.29e-13 68.2
Msa0803010 MtrunA17_Chr4g0010781 46.053 76 40 1 1 76 83 157 7.63e-13 68.9
Msa0803010 MtrunA17_Chr5g0414471 53.125 64 29 1 4 67 25 87 1.01e-12 68.6
Msa0803010 MtrunA17_Chr1g0159511 45.946 74 39 1 4 77 6 78 1.57e-12 67.8
Msa0803010 MtrunA17_Chr7g0242951 49.254 67 32 1 3 69 26 90 1.59e-12 68.2
Msa0803010 MtrunA17_Chr1g0173931 41.573 89 45 3 6 91 40 124 4.53e-12 65.9
Msa0803010 MtrunA17_Chr6g0460381 42.029 69 36 1 3 67 2 70 1.01e-11 63.5
Msa0803010 MtrunA17_Chr7g0258061 28.889 180 110 7 6 172 24 198 1.64e-11 63.9
Msa0803010 MtrunA17_Chr2g0295821 36.290 124 64 4 4 120 104 219 1.96e-11 64.3
Msa0803010 MtrunA17_Chr6g0476751 49.231 65 31 1 3 67 65 127 2.34e-11 65.1
Msa0803010 MtrunA17_Chr5g0393371 41.892 74 42 1 4 77 6 78 4.13e-11 63.5
Msa0803010 MtrunA17_Chr2g0295361 49.231 65 31 1 3 67 38 100 4.95e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803010 AT2G20560.1 62.798 336 117 6 1 334 1 330 3.13e-138 395
Msa0803010 AT3G08910.1 61.194 335 108 7 1 334 1 314 3.09e-133 382
Msa0803010 AT4G28480.1 62.500 344 116 7 1 334 1 341 1.32e-129 374
Msa0803010 AT5G01390.1 59.118 340 120 7 1 334 1 327 2.17e-129 373
Msa0803010 AT5G25530.2 53.198 344 138 8 1 334 1 331 1.19e-115 338
Msa0803010 AT5G25530.1 51.989 352 138 9 1 334 1 339 1.68e-112 330
Msa0803010 AT5G01390.2 52.395 334 94 5 1 334 1 269 1.75e-103 305
Msa0803010 AT1G10350.1 49.853 341 157 7 1 331 1 337 1.37e-102 305
Msa0803010 AT1G59725.1 50.147 339 147 6 1 334 1 322 4.72e-99 296
Msa0803010 AT3G47940.1 49.573 351 143 10 1 331 1 337 9.92e-98 293
Msa0803010 AT5G01390.3 44.611 334 81 5 1 334 1 230 7.57e-77 236
Msa0803010 AT2G20550.1 50.000 278 93 5 100 334 3 277 3.53e-74 231
Msa0803010 AT2G20550.2 50.000 278 93 5 100 334 3 277 3.53e-74 231
Msa0803010 AT5G01390.4 55.838 197 68 5 1 190 1 185 1.13e-63 202
Msa0803010 AT4G28480.2 66.176 136 43 2 199 334 151 283 3.15e-54 179
Msa0803010 AT4G28480.2 70.796 113 30 2 1 110 1 113 4.67e-48 164
Msa0803010 AT3G44110.1 32.070 343 203 9 5 328 15 346 4.05e-34 130
Msa0803010 AT5G22060.1 31.319 364 179 10 5 328 15 347 6.78e-34 129
Msa0803010 AT1G44160.1 40.437 183 105 3 154 335 169 348 1.13e-33 127
Msa0803010 AT1G11040.1 38.624 189 107 4 147 334 246 426 4.56e-33 127
Msa0803010 AT3G62600.1 29.940 334 203 9 2 328 24 333 5.64e-31 120
Msa0803010 AT3G44110.2 31.707 328 194 9 5 313 15 331 2.68e-29 115
Msa0803010 AT2G22360.1 26.571 350 220 12 4 331 86 420 1.49e-19 89.4
Msa0803010 AT4G39960.1 52.326 86 38 2 4 88 85 168 6.40e-19 87.8
Msa0803010 AT4G39960.2 52.326 86 38 2 4 88 85 168 6.40e-19 87.8
Msa0803010 AT1G80030.4 52.941 85 35 2 4 88 75 154 2.21e-18 86.3
Msa0803010 AT1G80030.2 52.941 85 35 2 4 88 75 154 2.56e-18 86.3
Msa0803010 AT1G80030.3 52.941 85 35 2 4 88 75 154 2.56e-18 86.3
Msa0803010 AT1G80030.1 52.941 85 35 2 4 88 75 154 2.56e-18 86.3
Msa0803010 AT2G41000.2 43.333 90 45 2 3 88 2 89 6.44e-17 78.6
Msa0803010 AT3G17830.1 50.000 86 37 2 2 85 61 142 6.81e-17 82.0
Msa0803010 AT2G41000.1 43.333 90 45 2 3 88 2 89 1.61e-16 77.0
Msa0803010 AT5G03160.1 51.471 68 33 0 4 71 370 437 6.60e-16 79.0
Msa0803010 AT1G59980.2 54.839 62 27 1 6 67 25 85 1.60e-15 77.0
Msa0803010 AT5G48030.1 56.923 65 27 1 4 68 94 157 1.65e-15 77.4
Msa0803010 AT1G59980.1 54.839 62 27 1 6 67 25 85 2.90e-15 76.6
Msa0803010 AT1G56300.2 50.000 66 30 1 5 67 14 79 5.48e-15 70.9
Msa0803010 AT5G16650.2 56.250 64 27 1 4 67 11 73 5.49e-15 72.4
Msa0803010 AT1G56300.1 50.000 66 30 1 5 67 14 79 5.64e-15 72.0
Msa0803010 AT5G16650.1 56.250 64 27 1 4 67 11 73 6.07e-15 71.2
Msa0803010 AT1G68370.1 56.250 64 27 1 4 67 17 79 1.02e-14 75.1
Msa0803010 AT2G21510.3 54.545 66 29 1 4 69 6 70 1.38e-13 71.2
Msa0803010 AT2G21510.1 54.545 66 29 1 4 69 6 70 1.38e-13 71.2
Msa0803010 AT2G21510.2 54.545 66 29 1 4 69 6 70 1.47e-13 71.2
Msa0803010 AT2G21510.4 54.545 66 29 1 4 69 6 70 1.47e-13 71.2
Msa0803010 AT2G33735.1 46.154 65 34 1 4 68 22 85 1.52e-13 67.0
Msa0803010 AT2G33735.2 46.154 65 34 1 4 68 22 85 1.52e-13 67.0
Msa0803010 AT2G21510.5 54.545 66 29 1 4 69 6 70 2.04e-13 70.5
Msa0803010 AT5G06910.1 50.794 63 30 1 6 68 31 92 5.07e-13 68.9
Msa0803010 AT1G71000.2 46.970 66 32 1 5 67 9 74 1.67e-12 65.1
Msa0803010 AT4G13830.1 43.284 67 37 1 3 68 65 131 2.65e-12 64.3
Msa0803010 AT4G13830.3 43.284 67 37 1 3 68 65 131 3.71e-12 64.7
Msa0803010 AT1G71000.1 46.970 66 32 1 5 67 9 74 4.31e-12 63.9
Msa0803010 AT2G35720.1 47.059 68 34 1 4 69 15 82 4.82e-12 67.4
Msa0803010 AT1G24120.1 50.000 64 31 1 4 67 20 82 5.21e-12 67.0
Msa0803010 AT4G13830.2 43.284 67 37 1 3 68 65 131 1.45e-11 63.2
Msa0803010 AT4G19570.1 50.000 70 33 1 4 73 66 133 1.53e-11 65.9
Msa0803010 AT3G12170.1 47.619 63 32 1 6 68 13 74 1.53e-11 64.3
Msa0803010 AT4G39150.3 48.485 66 33 1 4 69 6 70 1.85e-11 64.7
Msa0803010 AT4G39150.1 48.485 66 33 1 4 69 6 70 1.85e-11 64.7
Msa0803010 AT4G39150.2 48.485 66 33 1 4 69 6 70 1.85e-11 64.7
Msa0803010 AT3G12170.2 47.619 63 32 1 6 68 49 110 2.42e-11 63.9
Msa0803010 AT3G08970.1 47.761 67 33 1 3 69 26 90 2.76e-11 65.1
Msa0803010 AT3G08970.2 47.761 67 33 1 3 69 26 90 2.76e-11 65.1
Msa0803010 AT5G37750.1 44.048 84 43 2 4 85 70 151 4.11e-11 62.8
Msa0803010 AT3G06340.2 36.697 109 64 2 3 111 66 169 4.91e-11 64.3
Msa0803010 AT3G06340.4 36.697 109 64 2 3 111 66 169 4.91e-11 64.3
Msa0803010 AT3G06340.3 36.697 109 64 2 3 111 66 169 4.91e-11 64.3
Msa0803010 AT3G06340.1 36.697 109 64 2 3 111 66 169 4.91e-11 64.3
Msa0803010 AT3G14200.1 45.312 64 33 1 6 67 14 77 5.68e-11 62.0
Msa0803010 AT1G21080.3 42.667 75 42 1 4 78 6 79 6.58e-11 63.5
Msa0803010 AT1G28210.1 31.694 183 71 8 4 184 48 178 6.72e-11 63.5
Msa0803010 AT1G21080.1 42.667 75 42 1 4 78 6 79 6.77e-11 63.5
Msa0803010 AT1G28210.3 31.694 183 71 8 4 184 48 178 6.89e-11 63.5
Msa0803010 AT1G28210.2 31.694 183 71 8 4 184 48 178 7.16e-11 63.5
Msa0803010 AT5G49060.2 49.231 65 31 1 4 68 99 161 9.56e-11 62.8
Msa0803010 AT5G49060.1 49.231 65 31 1 4 68 99 161 9.56e-11 62.8

Find 225 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGAAACTGTTTGTTTA+TGG 0.141711 5_3:+17985555 None:intergenic
GGTTGTTCATTTCCTTTCTC+TGG 0.197269 5_3:+17980650 None:intergenic
TTTATCTGTTACAACAAAAT+TGG 0.203550 5_3:-17982830 Msa0803010:five_prime_UTR
TTTGGATTACTATGAGATTT+TGG 0.205034 5_3:-17982435 Msa0803010:CDS
TGTGAAGGATTCTTGGAAAT+TGG 0.207598 5_3:+17980395 None:intergenic
TTAAAGTTTGGCCTAATTAC+TGG 0.231076 5_3:+17983014 None:intergenic
TTATTGTCAGGATTCTTATC+AGG 0.253732 5_3:+17982344 None:intergenic
ACAGATTAAACCTTTATTCT+TGG 0.256184 5_3:+17983287 None:intergenic
ACCCTTCTGTGAAGGATTCT+TGG 0.263216 5_3:+17980388 None:intergenic
CTGACCATTGCCATAGAAAA+TGG 0.264965 5_3:-17980461 Msa0803010:CDS
GCCATGTTACCTTGATTTAC+TGG 0.265286 5_3:+17985076 None:intergenic
CTATGAACATTTCTTAGTTC+TGG 0.271872 5_3:+17980306 None:intergenic
CTGACAAGGTTTCTAGAAAA+TGG 0.277463 5_3:+17983039 None:intergenic
GTAGATTTGCTGTGCGTAAT+TGG 0.280019 5_3:-17983260 Msa0803010:five_prime_UTR
CTTGTGTCAATCTAATAATT+TGG 0.282486 5_3:-17984082 Msa0803010:five_prime_UTR
CCTTGTCAGTTCCAGTAATT+AGG 0.282558 5_3:-17983025 Msa0803010:five_prime_UTR
ACATATGGTACGTTGATTAA+TGG 0.286624 5_3:-17984210 Msa0803010:five_prime_UTR
AAATATGCCATCTGCACTTC+TGG 0.292239 5_3:+17981338 None:intergenic
AATCCAACCAGGCTGGAAAA+AGG 0.300367 5_3:-17980690 Msa0803010:CDS
ACCTTCTGCCATCATGAGTT+TGG 0.300403 5_3:+17981373 None:intergenic
CTCGAAGAGATGATAATAAA+TGG 0.305688 5_3:-17984042 Msa0803010:five_prime_UTR
CCATCATGAGTTTGGAAGTA+TGG 0.318658 5_3:+17981381 None:intergenic
GTTCAAAATTCCTGCTAGAT+AGG 0.321641 5_3:-17982803 Msa0803010:five_prime_UTR
TCTATTATTGTGTTGTTTAA+CGG 0.324706 5_3:-17982893 Msa0803010:five_prime_UTR
GAACAAAGCTACTCGAATTC+TGG 0.331117 5_3:-17983515 Msa0803010:five_prime_UTR
ATTATTATTGAACAGGACTA+TGG 0.331207 5_3:+17982554 None:intergenic
CATAGACCAAAATCATAAAA+TGG 0.335673 5_3:+17980185 None:intergenic
TCGTGGGTGTCCAGGTCTTT+TGG 0.336631 5_3:-17981231 Msa0803010:intron
CTTATCAGGGTGCCATTTCA+TGG 0.338061 5_3:+17982358 None:intergenic
TGTATCTTAGCATGCGTACT+AGG 0.338525 5_3:-17983603 Msa0803010:five_prime_UTR
CATATGGTACGTTGATTAAT+GGG 0.347931 5_3:-17984209 Msa0803010:five_prime_UTR
TACAAGACAAGGTAATGATT+TGG 0.349376 5_3:-17980570 Msa0803010:CDS
AAAACATCGGACAAAATAAC+TGG 0.353907 5_3:-17985121 Msa0803010:five_prime_UTR
TGTATTAATGTGTGGACTTT+GGG 0.362633 5_3:-17983446 Msa0803010:five_prime_UTR
GATTCCATGACCAAGAATAA+AGG 0.364161 5_3:-17983297 Msa0803010:five_prime_UTR
GGAGGAAAACCATGTGAAAA+AGG 0.364683 5_3:-17984394 Msa0803010:five_prime_UTR
CACCTTCCAACTTACTACTT+TGG 0.365824 5_3:-17980495 Msa0803010:CDS
CTCATTCCCATTCCTCCATA+AGG 0.366245 5_3:+17981291 None:intergenic
CTTTCGGTGCAATGATTCAT+AGG 0.370622 5_3:-17984632 Msa0803010:five_prime_UTR
AGCCTTGAGGAACTTTATAA+AGG 0.373517 5_3:-17981114 Msa0803010:CDS
ACACAAGATGCACTTGGTTA+TGG 0.374180 5_3:+17980264 None:intergenic
CTTCACAGAAGGGTAATCTT+AGG 0.375432 5_3:-17980379 Msa0803010:CDS
AATGTGGTATACTTAAAGTT+TGG 0.376001 5_3:+17983002 None:intergenic
GGGCGGCGGCTGCAGAGGCA+TGG 0.376556 5_3:-17981268 Msa0803010:CDS
CGTCACGATCACAACACTTT+CGG 0.378618 5_3:-17984648 Msa0803010:five_prime_UTR
TGTAATGATTATTATTGAAC+AGG 0.381434 5_3:+17982547 None:intergenic
CTTGACAGGATGCGGCTTCA+AGG 0.381833 5_3:-17983832 Msa0803010:five_prime_UTR
GCCGGCAACCACTTCTTCAT+AGG 0.383100 5_3:+17980427 None:intergenic
GAATTCGAGTAGCTTTGTTC+AGG 0.383912 5_3:+17983518 None:intergenic
TAGTTTCTGTGAATCAGTTT+AGG 0.385256 5_3:-17984608 Msa0803010:five_prime_UTR
CTCCCGTACATCCCTGCATC+TGG 0.391895 5_3:+17983802 None:intergenic
GTTGTTCATTTCCTTTCTCT+GGG 0.397871 5_3:+17980651 None:intergenic
ATGGAAAGAAGAAAGTGAAT+TGG 0.398728 5_3:+17985505 None:intergenic
GTACTATAAGTGACCATGTT+AGG 0.400289 5_3:+17983907 None:intergenic
AAGCAGAAGTTTGTTGAAGC+TGG 0.402220 5_3:-17983376 Msa0803010:five_prime_UTR
TAATGCTGAAATATTCTGTT+GGG 0.404241 5_3:-17982701 Msa0803010:five_prime_UTR
TTCCAACTTACTACTTTGGA+TGG 0.408557 5_3:-17980491 Msa0803010:CDS
AAGCTCCAACTTGCTCGATT+AGG 0.409800 5_3:+17983697 None:intergenic
TTAACTATATGTAGAAGTTA+TGG 0.409830 5_3:-17984522 Msa0803010:five_prime_UTR
GATATTAGATGGCTGCATTC+CGG 0.411996 5_3:-17983485 Msa0803010:five_prime_UTR
ATAGAAAACTTGCCATGAAA+TGG 0.412382 5_3:-17982370 Msa0803010:CDS
TGGTTCTAGCCTGGTGGATA+AGG 0.413461 5_3:-17983130 Msa0803010:five_prime_UTR
GGCGGCGGCTGCAGAGGCAT+GGG 0.419490 5_3:-17981267 Msa0803010:CDS
ATAGGCCACTTGATGCCATC+AGG 0.421765 5_3:-17984491 Msa0803010:five_prime_UTR
TCAAGCCCTTATGGAGGAAT+GGG 0.422615 5_3:-17981297 Msa0803010:CDS
TCATTCCCATTCCTCCATAA+GGG 0.426221 5_3:+17981292 None:intergenic
GCAAGAAGATTGCGAGGTTA+CGG 0.426679 5_3:-17984556 Msa0803010:five_prime_UTR
ATCAGGCTGGCATCCACGAT+TGG 0.427630 5_3:+17984239 None:intergenic
CTCATGATGGCAGAAGGTTT+AGG 0.431407 5_3:-17981368 Msa0803010:CDS
TAAACCTTTATTCTTGGTCA+TGG 0.433411 5_3:+17983293 None:intergenic
TCAGCATCATTCTTATTGTC+AGG 0.435149 5_3:+17982332 None:intergenic
ACCATGTCTGTCGGTGTTTG+TGG 0.435390 5_3:-17982736 Msa0803010:five_prime_UTR
ATATCTGCAGCAATGACATT+TGG 0.437256 5_3:+17980629 None:intergenic
TGGAAAGAAGAAAGTGAATT+GGG 0.437955 5_3:+17985506 None:intergenic
ATGGGAGGTGCCTTGCGTCT+TGG 0.439334 5_3:+17981156 None:intergenic
TCCTATGAAGAAGTGGTTGC+CGG 0.441137 5_3:-17980428 Msa0803010:CDS
TTCATTGATGAGATGGCTCT+TGG 0.442511 5_3:-17983730 Msa0803010:five_prime_UTR
TGTGGTGAACGGAAAGCGTT+AGG 0.443296 5_3:+17985482 None:intergenic
ATTCTGCAACAGATGAGTAT+AGG 0.444169 5_3:-17984680 Msa0803010:intron
ATGTATTAATGTGTGGACTT+TGG 0.444914 5_3:-17983447 Msa0803010:five_prime_UTR
AGTCCAACATTATTACTTGA+AGG 0.445082 5_3:-17980128 Msa0803010:three_prime_UTR
GGAATGGGAATGAGGGGCGG+CGG 0.451910 5_3:-17981282 Msa0803010:CDS
TACGCATGCTAAGATACAAT+TGG 0.453192 5_3:+17983608 None:intergenic
CTGGAGGAGATGATATTAGA+TGG 0.454455 5_3:-17983496 Msa0803010:five_prime_UTR
GGACTTTATTTATGACACTA+AGG 0.455078 5_3:+17980146 None:intergenic
GTACCATATGTATACGAATC+AGG 0.455428 5_3:+17984222 None:intergenic
TTACAAGGAGATGCGAGAAA+AGG 0.456525 5_3:-17984361 Msa0803010:five_prime_UTR
AGGAGCTACTGAGCTATTGC+TGG 0.458525 5_3:-17983407 Msa0803010:five_prime_UTR
ATGAGGGGCGGCGGCTGCAG+AGG 0.461247 5_3:-17981273 Msa0803010:CDS
GTTTCAGCATCAACCGTGCT+AGG 0.461527 5_3:+17980335 None:intergenic
CACATATACCTCATATGCTT+CGG 0.461738 5_3:+17982289 None:intergenic
GAAAGCAAAGTAGTGGAAGA+TGG 0.462215 5_3:-17982459 Msa0803010:exon
AATATGCCATCTGCACTTCT+GGG 0.462504 5_3:+17981339 None:intergenic
TATTGTCAGGATTCTTATCA+GGG 0.462954 5_3:+17982345 None:intergenic
ACTTATAGTACTTTAATCAA+TGG 0.464152 5_3:-17983895 Msa0803010:five_prime_UTR
TTGGATGAGATGGAGGAGAA+AGG 0.469622 5_3:-17984147 Msa0803010:five_prime_UTR
CTTATGGAGGAATGGGAATG+AGG 0.472062 5_3:-17981290 Msa0803010:CDS
AAAGTAGTGGAAGATGGGTT+TGG 0.472595 5_3:-17982453 Msa0803010:exon
TTCAAGCCCTTATGGAGGAA+TGG 0.472986 5_3:-17981298 Msa0803010:CDS
CAGCCTGATTCGTATACATA+TGG 0.475246 5_3:-17984225 Msa0803010:five_prime_UTR
ACTCATATCCGAAGCATATG+AGG 0.475266 5_3:-17982297 Msa0803010:intron
ATGGATGGTTTGTGTAAAAG+TGG 0.477196 5_3:-17983985 Msa0803010:five_prime_UTR
ATCAATGGACTGTGTAAAGA+AGG 0.477246 5_3:-17983880 Msa0803010:five_prime_UTR
GTATCTTAGCATGCGTACTA+GGG 0.479861 5_3:-17983602 Msa0803010:five_prime_UTR
TACGGTATTTGATATTCTTG+TGG 0.480602 5_3:-17984415 Msa0803010:five_prime_UTR
CAACATTATTGCAAAGACCT+TGG 0.481900 5_3:+17983647 None:intergenic
AATGGAGTTGTTAGAAGTGA+TGG 0.484604 5_3:-17983947 Msa0803010:five_prime_UTR
TACAAGGAGATGCGAGAAAA+GGG 0.485030 5_3:-17984360 Msa0803010:five_prime_UTR
GTTGATCAGAAACTTCACTT+TGG 0.486721 5_3:+17982591 None:intergenic
AAACCAGATGCAGGGATGTA+CGG 0.487990 5_3:-17983805 Msa0803010:five_prime_UTR
AAAATCACTTTCCCAGAGAA+AGG 0.488986 5_3:-17980662 Msa0803010:CDS
ACTTATAGTTCTTTAATGGA+TGG 0.489822 5_3:-17984000 Msa0803010:five_prime_UTR
TCAGGCTGGCATCCACGATT+GGG 0.490719 5_3:+17984240 None:intergenic
GAAAAGTGAAAGCAAAGTAG+TGG 0.495138 5_3:-17982466 Msa0803010:five_prime_UTR
ACATTCCACATTCCCTCATC+CGG 0.496913 5_3:+17983466 None:intergenic
ATTGTTAGTATTTCCTCCAC+AGG 0.497108 5_3:+17980716 None:intergenic
GGAAATTGGCATCCTTTCGC+CGG 0.499695 5_3:+17980409 None:intergenic
TTTATGGAAGAAGATTTAAG+AGG 0.499755 5_3:+17985571 None:intergenic
AGATGGCTGCATTCCGGATG+AGG 0.501610 5_3:-17983479 Msa0803010:five_prime_UTR
TTGACAGGATGCGGCTTCAA+GGG 0.502557 5_3:-17983831 Msa0803010:five_prime_UTR
AAAGCAAAGTAGTGGAAGAT+GGG 0.505371 5_3:-17982458 Msa0803010:exon
CGCCTTGATCAAAATATTGA+GGG 0.505835 5_3:+17984317 None:intergenic
GTCCATCCAAAGTAGTAAGT+TGG 0.505940 5_3:+17980489 None:intergenic
GATTGATCGCACGAGAATGC+AGG 0.507692 5_3:+17985594 None:intergenic
AGGGGTATCTCTGTTGAGAT+TGG 0.508364 5_3:-17983583 Msa0803010:five_prime_UTR
CAAGGGTTGAAACCAGATGC+AGG 0.510190 5_3:-17983814 Msa0803010:five_prime_UTR
AGCAGAAGTTTGTTGAAGCT+GGG 0.510507 5_3:-17983375 Msa0803010:five_prime_UTR
AACCAGATGCAGGGATGTAC+GGG 0.512657 5_3:-17983804 Msa0803010:five_prime_UTR
TAGAGATTCTTGACAGGATG+CGG 0.517119 5_3:-17983840 Msa0803010:five_prime_UTR
TTCCAAGAATCCTTCACAGA+AGG 0.519442 5_3:-17980390 Msa0803010:CDS
CCTAATTACTGGAACTGACA+AGG 0.522114 5_3:+17983025 None:intergenic
CTAATGCTGAAATATTCTGT+TGG 0.522702 5_3:-17982702 Msa0803010:five_prime_UTR
TGATCAAACCCATTACATGA+TGG 0.522879 5_3:-17983075 Msa0803010:five_prime_UTR
AATCCTTCAAGTAATAATGT+TGG 0.523941 5_3:+17980125 None:intergenic
ATTGATGAGATGGCTCTTGG+CGG 0.525844 5_3:-17983727 Msa0803010:five_prime_UTR
AAGCTGTAGAGATTCTTGAC+AGG 0.525923 5_3:-17983846 Msa0803010:five_prime_UTR
TTCAAAATTCCTGCTAGATA+GGG 0.527697 5_3:-17982802 Msa0803010:five_prime_UTR
AGCAAACTTCATTGATGAGA+TGG 0.529445 5_3:-17983737 Msa0803010:five_prime_UTR
AAAGGAACTGTTGGATGAGA+TGG 0.530854 5_3:-17984157 Msa0803010:five_prime_UTR
GGAGGAATGGGAATGAGGGG+CGG 0.532345 5_3:-17981285 Msa0803010:CDS
TCCAAGAATCCTTCACAGAA+GGG 0.533320 5_3:-17980389 Msa0803010:CDS
TTATGGAGGAATGGGAATGA+GGG 0.534716 5_3:-17981289 Msa0803010:CDS
GCGCCTTGATCAAAATATTG+AGG 0.536873 5_3:+17984316 None:intergenic
TTGAGGGAAACAACACTTGG+TGG 0.539675 5_3:+17984333 None:intergenic
GATTTGCTGTGCGTAATTGG+AGG 0.540099 5_3:-17983257 Msa0803010:five_prime_UTR
TGGACATTCTTCACAAGCAA+TGG 0.541650 5_3:-17983965 Msa0803010:five_prime_UTR
GACTTTATTTATGACACTAA+GGG 0.541822 5_3:+17980147 None:intergenic
TAGTCAGGCAAAGGAACTGT+TGG 0.544319 5_3:-17984166 Msa0803010:five_prime_UTR
AAGAAGTGGTTGCCGGCGAA+AGG 0.544486 5_3:-17980421 Msa0803010:CDS
ACATATTTACCCTATCTAGC+AGG 0.545164 5_3:+17982793 None:intergenic
TGCAGAGGCATGGGCATGAG+AGG 0.547127 5_3:-17981258 Msa0803010:CDS
TAATGTGTGGACTTTGGGAT+CGG 0.547364 5_3:-17983441 Msa0803010:five_prime_UTR
GACGCAGAAGTCTTACCTTA+CGG 0.549292 5_3:-17984433 Msa0803010:five_prime_UTR
GTATGTTTGCCTTATCCACC+AGG 0.553164 5_3:+17983121 None:intergenic
AGTTACACTAGTTTGATACA+TGG 0.553978 5_3:-17984105 Msa0803010:five_prime_UTR
TGTTGCATTCCAGTAAATCA+AGG 0.554299 5_3:-17985085 Msa0803010:intron
TGTCAATCTAATAATTTGGA+CGG 0.554613 5_3:-17984078 Msa0803010:five_prime_UTR
TTCGAATTCATCTCCGATGT+CGG 0.555714 5_3:-17985456 Msa0803010:intron
CACAATGTATTTACAAGACA+AGG 0.557753 5_3:-17980581 Msa0803010:CDS
TTATGGAAGAAGATTTAAGA+GGG 0.558081 5_3:+17985572 None:intergenic
CAATTGAAATCCAACCAGGC+TGG 0.559519 5_3:-17980697 Msa0803010:CDS
CCATACTTCCAAACTCATGA+TGG 0.563682 5_3:-17981381 Msa0803010:CDS
GTGAACGGAAAGCGTTAGGA+TGG 0.563921 5_3:+17985486 None:intergenic
GGTATTTGATATTCTTGTGG+AGG 0.566202 5_3:-17984412 Msa0803010:five_prime_UTR
TGATCCATCCTATGAAGAAG+TGG 0.566754 5_3:-17980435 Msa0803010:CDS
AATGAAGCAAGAAGATTGCG+AGG 0.566982 5_3:-17984562 Msa0803010:five_prime_UTR
GCAACAGATGAGTATAGGAA+TGG 0.567993 5_3:-17984675 Msa0803010:intron
GAAGTTATGGACGTGTGCAT+AGG 0.571819 5_3:-17984509 Msa0803010:five_prime_UTR
CATATGTATACGAATCAGGC+TGG 0.574821 5_3:+17984226 None:intergenic
CTAAGATTACCCTTCTGTGA+AGG 0.575988 5_3:+17980380 None:intergenic
GCATTCCGGATGAGGGAATG+TGG 0.576334 5_3:-17983471 Msa0803010:five_prime_UTR
TACAATTGGAATGAGCGAGT+TGG 0.577733 5_3:+17983622 None:intergenic
AACAAAATGAACCAAAACAT+CGG 0.577758 5_3:-17985134 Msa0803010:five_prime_UTR
TGTCTTGTAAATACATTGTG+AGG 0.577798 5_3:+17980584 None:intergenic
GCAACCACTTCTTCATAGGA+TGG 0.578289 5_3:+17980431 None:intergenic
GCTGCACTGTCACCTGCTGT+AGG 0.578443 5_3:+17981405 None:intergenic
GATGGCTGCATTCCGGATGA+GGG 0.578984 5_3:-17983478 Msa0803010:five_prime_UTR
AAAGAAAGTCCTATCTTGAG+TGG 0.579591 5_3:-17982493 Msa0803010:five_prime_UTR
TATCCACCAGGCTAGAACCA+TGG 0.582402 5_3:+17983133 None:intergenic
CTAGTGTAACTAACAACAGA+AGG 0.583490 5_3:+17984117 None:intergenic
TCCAAACTCATGATGGCAGA+AGG 0.585224 5_3:-17981374 Msa0803010:CDS
TTCAATCCCAGAAGTGCAGA+TGG 0.585321 5_3:-17981345 Msa0803010:CDS
TAAAGTTCCTCAAGGCTGCA+AGG 0.586456 5_3:+17981120 None:intergenic
TACCTTTATAAAGTTCCTCA+AGG 0.588311 5_3:+17981112 None:intergenic
CAAGAATATCAAATACCGTA+AGG 0.590388 5_3:+17984418 None:intergenic
TAAATTGCCTTGCAGCCTTG+AGG 0.591013 5_3:-17981127 Msa0803010:CDS
AATGTGTGGACTTTCTCTGA+TGG 0.591588 5_3:-17983325 Msa0803010:five_prime_UTR
TTTCCATGGTTCTAGCCTGG+TGG 0.591889 5_3:-17983136 Msa0803010:five_prime_UTR
CTTACTACTTTGGATGGACG+AGG 0.593609 5_3:-17980485 Msa0803010:CDS
TAGGCCACTTGATGCCATCA+GGG 0.594845 5_3:-17984490 Msa0803010:five_prime_UTR
TTTCAGCATCAACCGTGCTA+GGG 0.595565 5_3:+17980336 None:intergenic
ATGCATAACATGGTTGTCCA+AGG 0.596435 5_3:-17983664 Msa0803010:five_prime_UTR
CAAAAGATATTACTTGCAGA+AGG 0.606997 5_3:-17980539 Msa0803010:CDS
GGAACTGTTGGATGAGATGG+AGG 0.611124 5_3:-17984154 Msa0803010:five_prime_UTR
ATCCAAAGTAGTAAGTTGGA+AGG 0.613336 5_3:+17980493 None:intergenic
TCTCACCTAATCGAGCAAGT+TGG 0.613681 5_3:-17983702 Msa0803010:five_prime_UTR
CATCTTATAGAAAACCCTGA+TGG 0.614744 5_3:+17984476 None:intergenic
CAACATCACATTCCCTAGCA+CGG 0.615494 5_3:-17980348 Msa0803010:CDS
AGAAGATTGCGAGGTTACGG+AGG 0.616046 5_3:-17984553 Msa0803010:five_prime_UTR
TTTGCACTATGAAAAGAATG+TGG 0.619290 5_3:+17982986 None:intergenic
TACTATACACAAGATGCACT+TGG 0.619548 5_3:+17980258 None:intergenic
AGAGTGTCTACAAACAGAGC+AGG 0.623091 5_3:+17983218 None:intergenic
CTGTTACAACAAAATTGGAG+AGG 0.623790 5_3:-17982825 Msa0803010:five_prime_UTR
CTAACAATTGAAATCCAACC+AGG 0.624854 5_3:-17980701 Msa0803010:CDS
TTTCGTGAAATGCCCAATCG+TGG 0.626478 5_3:-17984252 Msa0803010:five_prime_UTR
GAGAGAGAACTGACCGACAT+CGG 0.629723 5_3:+17985443 None:intergenic
AAGGGTTGAAACCAGATGCA+GGG 0.632193 5_3:-17983813 Msa0803010:five_prime_UTR
AATGCTGAAATATTCTGTTG+GGG 0.632569 5_3:-17982700 Msa0803010:five_prime_UTR
AATAATAGATAAAATATCTG+AGG 0.635109 5_3:+17982907 None:intergenic
TCATGTCAGAATGCATAACA+TGG 0.636786 5_3:-17983674 Msa0803010:five_prime_UTR
AATCAGTTTAGGCAAGCTGA+AGG 0.639031 5_3:-17984597 Msa0803010:five_prime_UTR
TCCACAAACACCGACAGACA+TGG 0.640708 5_3:+17982735 None:intergenic
GAGTCAAGCTCCAAGACGCA+AGG 0.642529 5_3:-17981166 Msa0803010:CDS
GAAAGCTGCAAGCAGCACAA+AGG 0.647125 5_3:+17983767 None:intergenic
ATGTGGAATGTATTAATGTG+TGG 0.649960 5_3:-17983454 Msa0803010:five_prime_UTR
TATCTTAGCATGCGTACTAG+GGG 0.654059 5_3:-17983601 Msa0803010:five_prime_UTR
AAAACCCTGATGGCATCAAG+TGG 0.657938 5_3:+17984486 None:intergenic
GACTGAAATGTATTAATGTG+TGG 0.658305 5_3:-17983339 Msa0803010:five_prime_UTR
ATTCTCACTATACTTTAACA+AGG 0.659955 5_3:-17982867 Msa0803010:five_prime_UTR
CAAAGCTACTCGAATTCTGG+AGG 0.661635 5_3:-17983512 Msa0803010:five_prime_UTR
AATGGGTTTGATCAAAACAG+AGG 0.666607 5_3:+17983084 None:intergenic
GTAAGGTAAGACTTCTGCGT+CGG 0.668696 5_3:+17984435 None:intergenic
ATATTGAGGGAAACAACACT+TGG 0.678647 5_3:+17984330 None:intergenic
TATGGAGGAATGGGAATGAG+GGG 0.684119 5_3:-17981288 Msa0803010:CDS
ATGTACGGGAGAATCATAAG+CGG 0.716926 5_3:-17983790 Msa0803010:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTTTTTTTTTTGAAT+CGG + chr5_3:17980413-17980432 None:intergenic 10.0%
!!! ATTTTTAAGTATTTTCAATT+TGG - chr5_3:17980893-17980912 Msa0803010:intron 10.0%
!!! TTTTTAAGTATTTTCAATTT+GGG - chr5_3:17980894-17980913 Msa0803010:intron 10.0%
!!! TGAATTCATTTTTTTTTGTT+AGG - chr5_3:17980294-17980313 Msa0803010:three_prime_UTR 15.0%
!! TCAATCAAAAATGATAAAAA+TGG + chr5_3:17980513-17980532 None:intergenic 15.0%
!!! TACTTAAAAATGAATGATTT+TGG + chr5_3:17980884-17980903 None:intergenic 15.0%
!!! TTTTACTTATAGTTCTTTAA+TGG - chr5_3:17981704-17981723 Msa0803010:intron 15.0%
!!! TTTTCTGATTACTATTTATA+TGG - chr5_3:17982771-17982790 Msa0803010:five_prime_UTR 15.0%
!! AATAATAGATAAAATATCTG+AGG + chr5_3:17982804-17982823 None:intergenic 15.0%
!! TTAACTATATGTAGAAGTTA+TGG - chr5_3:17981186-17981205 Msa0803010:CDS 20.0%
!! GAACTATAAGTAAAAACATT+TGG + chr5_3:17981699-17981718 None:intergenic 20.0%
!! ACTTATAGTACTTTAATCAA+TGG - chr5_3:17981813-17981832 Msa0803010:intron 20.0%
!! AAAAATAACCATCATGTAAT+GGG + chr5_3:17982644-17982663 None:intergenic 20.0%
!! TAAAAATAACCATCATGTAA+TGG + chr5_3:17982645-17982664 None:intergenic 20.0%
!! AGTAATCAGAAAAATAAGAA+TGG + chr5_3:17982764-17982783 None:intergenic 20.0%
!!! TCTATTATTGTGTTGTTTAA+CGG - chr5_3:17982815-17982834 Msa0803010:five_prime_UTR 20.0%
!! TTTATCTGTTACAACAAAAT+TGG - chr5_3:17982878-17982897 Msa0803010:five_prime_UTR 20.0%
!! TGTAATGATTATTATTGAAC+AGG + chr5_3:17983164-17983183 None:intergenic 20.0%
!!! AAATTGAAAATTGAGGATTT+TGG + chr5_3:17983728-17983747 None:intergenic 20.0%
!! AAGGAAAAAATTGAAAATTG+AGG + chr5_3:17983735-17983754 None:intergenic 20.0%
!!! TTTTTATTTTGGTAAAACCA+AGG + chr5_3:17983984-17984003 None:intergenic 20.0%
!!! ATTGAAATTTTACTGAATGA+TGG + chr5_3:17984091-17984110 None:intergenic 20.0%
!!! TTTCTTCCATTTTATGATTT+TGG - chr5_3:17985517-17985536 Msa0803010:five_prime_UTR 20.0%
! TTATGGAAGAAGATTTAAGA+GGG + chr5_3:17980139-17980158 None:intergenic 25.0%
! TTTATGGAAGAAGATTTAAG+AGG + chr5_3:17980140-17980159 None:intergenic 25.0%
! AAGAAGAAACTGTTTGTTTA+TGG + chr5_3:17980156-17980175 None:intergenic 25.0%
! TTCTGACAATTAATTTCCTT+TGG - chr5_3:17980323-17980342 Msa0803010:CDS 25.0%
! ATGAACGTATATTTAGTGTT+TGG - chr5_3:17980355-17980374 Msa0803010:CDS 25.0%
! TATTTAGTGTTTGGTATCTT+AGG - chr5_3:17980364-17980383 Msa0803010:CDS 25.0%
! AACAAAATGAACCAAAACAT+CGG - chr5_3:17980574-17980593 Msa0803010:CDS 25.0%
!!! ATTTTCAATTTGGGTTATCA+TGG - chr5_3:17980903-17980922 Msa0803010:intron 25.0%
!! CTAGTAAAACTTTGTTTAAG+TGG - chr5_3:17980926-17980945 Msa0803010:intron 25.0%
!!! ACTGAATTTGTAATTTGCTT+TGG + chr5_3:17980952-17980971 None:intergenic 25.0%
! CAAACTTAGAAAAATTAGTC+AGG - chr5_3:17981527-17981546 Msa0803010:intron 25.0%
! CTTGTGTCAATCTAATAATT+TGG - chr5_3:17981626-17981645 Msa0803010:intron 25.0%
! TGTCAATCTAATAATTTGGA+CGG - chr5_3:17981630-17981649 Msa0803010:intron 25.0%
! ACTTATAGTTCTTTAATGGA+TGG - chr5_3:17981708-17981727 Msa0803010:intron 25.0%
! ACAGATTAAACCTTTATTCT+TGG + chr5_3:17982424-17982443 None:intergenic 25.0%
! AATGTGGTATACTTAAAGTT+TGG + chr5_3:17982709-17982728 None:intergenic 25.0%
! ATTCTCACTATACTTTAACA+AGG - chr5_3:17982841-17982860 Msa0803010:five_prime_UTR 25.0%
! TAATGCTGAAATATTCTGTT+GGG - chr5_3:17983007-17983026 Msa0803010:five_prime_UTR 25.0%
! ATTATTATTGAACAGGACTA+TGG + chr5_3:17983157-17983176 None:intergenic 25.0%
!! TTTGGATTACTATGAGATTT+TGG - chr5_3:17983273-17983292 Msa0803010:five_prime_UTR 25.0%
! GTTTAATTGCTACAAAACTA+TGG - chr5_3:17983464-17983483 Msa0803010:five_prime_UTR 25.0%
!!! ATTATCTTGTTTCTCTGTTT+TGG - chr5_3:17983534-17983553 Msa0803010:five_prime_UTR 25.0%
!!! AAAATTGAGGATTTTGGTAA+GGG + chr5_3:17983722-17983741 None:intergenic 25.0%
!! ATATGTTTTTCCATATACCA+CGG + chr5_3:17983886-17983905 None:intergenic 25.0%
! GGAAAAACATATCTTATGAT+AGG - chr5_3:17983894-17983913 Msa0803010:five_prime_UTR 25.0%
! GTAACTAAGATCAATTTAAG+AGG + chr5_3:17983924-17983943 None:intergenic 25.0%
! ATTGATCTTAGTTACTTCAA+AGG - chr5_3:17983929-17983948 Msa0803010:five_prime_UTR 25.0%
!!! GCACACAATTCTTTTTATTT+TGG + chr5_3:17983995-17984014 None:intergenic 25.0%
!! ACTTGTTGAGTAATGTTATA+AGG - chr5_3:17984038-17984057 Msa0803010:five_prime_UTR 25.0%
! CTTGTTGAGTAATGTTATAA+GGG - chr5_3:17984039-17984058 Msa0803010:five_prime_UTR 25.0%
!!! CAAGGCAATTTATTTTCAAT+GGG + chr5_3:17984573-17984592 None:intergenic 25.0%
! AGTTTCAATACATTTCTAAC+TGG - chr5_3:17984777-17984796 Msa0803010:intron 25.0%
! ATAAGATGTAGTTACAAAGT+TGG + chr5_3:17984843-17984862 None:intergenic 25.0%
! CATAGACCAAAATCATAAAA+TGG + chr5_3:17985526-17985545 None:intergenic 25.0%
!! GACTTTATTTATGACACTAA+GGG + chr5_3:17985564-17985583 None:intergenic 25.0%
! AATCCTTCAAGTAATAATGT+TGG + chr5_3:17985586-17985605 None:intergenic 25.0%
TGGAAAGAAGAAAGTGAATT+GGG + chr5_3:17980205-17980224 None:intergenic 30.0%
ATGGAAAGAAGAAAGTGAAT+TGG + chr5_3:17980206-17980225 None:intergenic 30.0%
! AATTCGAATTTTGTGGTGAA+CGG + chr5_3:17980240-17980259 None:intergenic 30.0%
CGTTCATAATCAAAATCCAA+AGG + chr5_3:17980342-17980361 None:intergenic 30.0%
! TTACAGAGCATGTTTTCAAT+CGG - chr5_3:17980447-17980466 Msa0803010:CDS 30.0%
!!! AAAACTGCTACGTTTTTTCT+TGG - chr5_3:17980479-17980498 Msa0803010:CDS 30.0%
! TTGCGTTTTCAGTAAATAAC+TGG - chr5_3:17980550-17980569 Msa0803010:CDS 30.0%
!! AGTTATTTTGTCCGATGTTT+TGG + chr5_3:17980588-17980607 None:intergenic 30.0%
AAAACATCGGACAAAATAAC+TGG - chr5_3:17980587-17980606 Msa0803010:CDS 30.0%
ACTGTGATTGGAGAATTTAA+TGG + chr5_3:17980660-17980679 None:intergenic 30.0%
!! TTAGGTTTAGTTTGAGACTT+GGG + chr5_3:17980780-17980799 None:intergenic 30.0%
AAAAGATACTACACTGAATC+TGG + chr5_3:17980853-17980872 None:intergenic 30.0%
AAAGCTAATAAAAGCCGAAA+AGG - chr5_3:17980978-17980997 Msa0803010:intron 30.0%
TAGTTTCTGTGAATCAGTTT+AGG - chr5_3:17981100-17981119 Msa0803010:CDS 30.0%
CAAGAATATCAAATACCGTA+AGG + chr5_3:17981293-17981312 None:intergenic 30.0%
TACGGTATTTGATATTCTTG+TGG - chr5_3:17981293-17981312 Msa0803010:CDS 30.0%
!!! AAAGGCTATTGGTTTTTACA+AGG - chr5_3:17981332-17981351 Msa0803010:CDS 30.0%
!!! TTCCCTCAATATTTTGATCA+AGG - chr5_3:17981389-17981408 Msa0803010:CDS 30.0%
! ACATATGGTACGTTGATTAA+TGG - chr5_3:17981498-17981517 Msa0803010:intron 30.0%
! CATATGGTACGTTGATTAAT+GGG - chr5_3:17981499-17981518 Msa0803010:intron 30.0%
TAGAAAAATTAGTCAGGCAA+AGG - chr5_3:17981533-17981552 Msa0803010:intron 30.0%
! AGTTACACTAGTTTGATACA+TGG - chr5_3:17981603-17981622 Msa0803010:intron 30.0%
CTCGAAGAGATGATAATAAA+TGG - chr5_3:17981666-17981685 Msa0803010:intron 30.0%
ATGTGGAATGTATTAATGTG+TGG - chr5_3:17982254-17982273 Msa0803010:intron 30.0%
ATGTATTAATGTGTGGACTT+TGG - chr5_3:17982261-17982280 Msa0803010:intron 30.0%
TGTATTAATGTGTGGACTTT+GGG - chr5_3:17982262-17982281 Msa0803010:intron 30.0%
GACTGAAATGTATTAATGTG+TGG - chr5_3:17982369-17982388 Msa0803010:CDS 30.0%
TAAACCTTTATTCTTGGTCA+TGG + chr5_3:17982418-17982437 None:intergenic 30.0%
TTACAGTTTCAAAAAAGGTC+GGG + chr5_3:17982525-17982544 None:intergenic 30.0%
GTTACAGTTTCAAAAAAGGT+CGG + chr5_3:17982526-17982545 None:intergenic 30.0%
CATCGTTACAGTTTCAAAAA+AGG + chr5_3:17982530-17982549 None:intergenic 30.0%
! TGTTGCAAAAAGATTTTCCA+TGG - chr5_3:17982558-17982577 Msa0803010:five_prime_UTR 30.0%
TTAAAGTTTGGCCTAATTAC+TGG + chr5_3:17982697-17982716 None:intergenic 30.0%
TTTGCACTATGAAAAGAATG+TGG + chr5_3:17982725-17982744 None:intergenic 30.0%
TTCAAAATTCCTGCTAGATA+GGG - chr5_3:17982906-17982925 Msa0803010:five_prime_UTR 30.0%
CTAATGCTGAAATATTCTGT+TGG - chr5_3:17983006-17983025 Msa0803010:five_prime_UTR 30.0%
AATGCTGAAATATTCTGTTG+GGG - chr5_3:17983008-17983027 Msa0803010:five_prime_UTR 30.0%
ATAGAAAACTTGCCATGAAA+TGG - chr5_3:17983338-17983357 Msa0803010:five_prime_UTR 30.0%
TATTGTCAGGATTCTTATCA+GGG + chr5_3:17983366-17983385 None:intergenic 30.0%
TTATTGTCAGGATTCTTATC+AGG + chr5_3:17983367-17983386 None:intergenic 30.0%
!! TGTTTACTGTCTTTTGTTTG+AGG - chr5_3:17983580-17983599 Msa0803010:five_prime_UTR 30.0%
AAATTCTTTGACCCTTCTTA+GGG + chr5_3:17983680-17983699 None:intergenic 30.0%
AAAATTCTTTGACCCTTCTT+AGG + chr5_3:17983681-17983700 None:intergenic 30.0%
!! GAAAATTGAGGATTTTGGTA+AGG + chr5_3:17983723-17983742 None:intergenic 30.0%
ACATTCAGATTGGATAATGA+AGG + chr5_3:17983754-17983773 None:intergenic 30.0%
TTCATTATCCAATCTGAATG+TGG - chr5_3:17983753-17983772 Msa0803010:five_prime_UTR 30.0%
! TTTGACTTTCATCCTAAGTA+AGG - chr5_3:17983819-17983838 Msa0803010:five_prime_UTR 30.0%
GATGGAAAATAAGTACAACA+AGG + chr5_3:17984073-17984092 None:intergenic 30.0%
! TCTGACGTAGTATATTGATT+TGG - chr5_3:17984201-17984220 Msa0803010:five_prime_UTR 30.0%
!! AGTATATTGATTTGGCTTCA+TGG - chr5_3:17984209-17984228 Msa0803010:five_prime_UTR 30.0%
! TCATAAATTGCTCTCTTTTG+CGG + chr5_3:17984249-17984268 None:intergenic 30.0%
!! CTGTAGGCATTTCATTTTTA+AGG + chr5_3:17984290-17984309 None:intergenic 30.0%
! ATTTTCGGCAAAGATGTATT+TGG - chr5_3:17984504-17984523 Msa0803010:five_prime_UTR 30.0%
!! GCAAGGCAATTTATTTTCAA+TGG + chr5_3:17984574-17984593 None:intergenic 30.0%
TACCTTTATAAAGTTCCTCA+AGG + chr5_3:17984599-17984618 None:intergenic 30.0%
CAAAAAGATGAAGATCTCAA+GGG - chr5_3:17984623-17984642 Msa0803010:five_prime_UTR 30.0%
TGATGTGAATTAAAAAGCCA+GGG + chr5_3:17984681-17984700 None:intergenic 30.0%
TTGATGTGAATTAAAAAGCC+AGG + chr5_3:17984682-17984701 None:intergenic 30.0%
TTCAATACATTTCTAACTGG+CGG - chr5_3:17984780-17984799 Msa0803010:intron 30.0%
TGTCTTGTAAATACATTGTG+AGG + chr5_3:17985127-17985146 None:intergenic 30.0%
CACAATGTATTTACAAGACA+AGG - chr5_3:17985127-17985146 Msa0803010:five_prime_UTR 30.0%
TACAAGACAAGGTAATGATT+TGG - chr5_3:17985138-17985157 Msa0803010:five_prime_UTR 30.0%
CAAAAGATATTACTTGCAGA+AGG - chr5_3:17985169-17985188 Msa0803010:intron 30.0%
! AATTCCATTTTCTATGGCAA+TGG + chr5_3:17985254-17985273 None:intergenic 30.0%
! TGGATCAATTCCATTTTCTA+TGG + chr5_3:17985260-17985279 None:intergenic 30.0%
CTATGAACATTTCTTAGTTC+TGG + chr5_3:17985405-17985424 None:intergenic 30.0%
! GGACTTTATTTATGACACTA+AGG + chr5_3:17985565-17985584 None:intergenic 30.0%
AGTCCAACATTATTACTTGA+AGG - chr5_3:17985580-17985599 Msa0803010:five_prime_UTR 30.0%
! GGAGATGAATTCGAATTTTG+TGG + chr5_3:17980247-17980266 None:intergenic 35.0%
TGTTGCATTCCAGTAAATCA+AGG - chr5_3:17980623-17980642 Msa0803010:CDS 35.0%
TCCAGTAAATCAAGGTAACA+TGG - chr5_3:17980631-17980650 Msa0803010:CDS 35.0%
CACGAAATCAAAACTGTGAT+TGG + chr5_3:17980672-17980691 None:intergenic 35.0%
TCAGTTAACACAGTTCTCAA+AGG - chr5_3:17980710-17980729 Msa0803010:CDS 35.0%
!! GTTAGGTTTAGTTTGAGACT+TGG + chr5_3:17980781-17980800 None:intergenic 35.0%
TAACTCCAACATTGAACACA+CGG - chr5_3:17980797-17980816 Msa0803010:intron 35.0%
!!! AGCTTTGTTTACGTCCTTTT+CGG + chr5_3:17980995-17981014 None:intergenic 35.0%
ATTCTGCAACAGATGAGTAT+AGG - chr5_3:17981028-17981047 Msa0803010:intron 35.0%
CATCTTATAGAAAACCCTGA+TGG + chr5_3:17981235-17981254 None:intergenic 35.0%
! CATCAGGGTTTTCTATAAGA+TGG - chr5_3:17981233-17981252 Msa0803010:intron 35.0%
! AGGGTTTTCTATAAGATGGA+AGG - chr5_3:17981237-17981256 Msa0803010:intron 35.0%
! CTATAAGATGGAAGGTTTTC+AGG - chr5_3:17981245-17981264 Msa0803010:intron 35.0%
GGTATTTGATATTCTTGTGG+AGG - chr5_3:17981296-17981315 Msa0803010:CDS 35.0%
AACCATGTGAAAAAGGCTAT+TGG - chr5_3:17981321-17981340 Msa0803010:CDS 35.0%
!! AACCAATAGCCTTTTTCACA+TGG + chr5_3:17981326-17981345 None:intergenic 35.0%
ATATTGAGGGAAACAACACT+TGG + chr5_3:17981381-17981400 None:intergenic 35.0%
CGCCTTGATCAAAATATTGA+GGG + chr5_3:17981394-17981413 None:intergenic 35.0%
GTACCATATGTATACGAATC+AGG + chr5_3:17981489-17981508 None:intergenic 35.0%
CTAGTGTAACTAACAACAGA+AGG + chr5_3:17981594-17981613 None:intergenic 35.0%
! ATGGATGGTTTGTGTAAAAG+TGG - chr5_3:17981723-17981742 Msa0803010:intron 35.0%
AATGGAGTTGTTAGAAGTGA+TGG - chr5_3:17981761-17981780 Msa0803010:intron 35.0%
GTACTATAAGTGACCATGTT+AGG + chr5_3:17981804-17981823 None:intergenic 35.0%
!! ATCAATGGACTGTGTAAAGA+AGG - chr5_3:17981828-17981847 Msa0803010:intron 35.0%
AGCAAACTTCATTGATGAGA+TGG - chr5_3:17981971-17981990 Msa0803010:intron 35.0%
TCATGTCAGAATGCATAACA+TGG - chr5_3:17982034-17982053 Msa0803010:intron 35.0%
CAACATTATTGCAAAGACCT+TGG + chr5_3:17982064-17982083 None:intergenic 35.0%
TACGCATGCTAAGATACAAT+TGG + chr5_3:17982103-17982122 None:intergenic 35.0%
!! GTCAAATGTTTTTGCAAGAG+AGG - chr5_3:17982164-17982183 Msa0803010:intron 35.0%
GATTCCATGACCAAGAATAA+AGG - chr5_3:17982411-17982430 Msa0803010:CDS 35.0%
! AATGGGTTTGATCAAAACAG+AGG + chr5_3:17982627-17982646 None:intergenic 35.0%
TGATCAAACCCATTACATGA+TGG - chr5_3:17982633-17982652 Msa0803010:five_prime_UTR 35.0%
! CTGACAAGGTTTCTAGAAAA+TGG + chr5_3:17982672-17982691 None:intergenic 35.0%
CTGTTACAACAAAATTGGAG+AGG - chr5_3:17982883-17982902 Msa0803010:five_prime_UTR 35.0%
GTTCAAAATTCCTGCTAGAT+AGG - chr5_3:17982905-17982924 Msa0803010:five_prime_UTR 35.0%
ACATATTTACCCTATCTAGC+AGG + chr5_3:17982918-17982937 None:intergenic 35.0%
GTTGATCAGAAACTTCACTT+TGG + chr5_3:17983120-17983139 None:intergenic 35.0%
!!! CAGGTTTTTTGTCTTGTTTC+TGG + chr5_3:17983191-17983210 None:intergenic 35.0%
! GATAGGACTTTCTTTTCTTC+AGG + chr5_3:17983210-17983229 None:intergenic 35.0%
AAAGAAAGTCCTATCTTGAG+TGG - chr5_3:17983215-17983234 Msa0803010:five_prime_UTR 35.0%
! TTTTCTCTTCCACTCAAGAT+AGG + chr5_3:17983227-17983246 None:intergenic 35.0%
GAAAAGTGAAAGCAAAGTAG+TGG - chr5_3:17983242-17983261 Msa0803010:five_prime_UTR 35.0%
! AAAGCAAAGTAGTGGAAGAT+GGG - chr5_3:17983250-17983269 Msa0803010:five_prime_UTR 35.0%
! GGATTACTATGAGATTTTGG+AGG - chr5_3:17983276-17983295 Msa0803010:five_prime_UTR 35.0%
TCAGCATCATTCTTATTGTC+AGG + chr5_3:17983379-17983398 None:intergenic 35.0%
CACATATACCTCATATGCTT+CGG + chr5_3:17983422-17983441 None:intergenic 35.0%
! ACTGATCATTCATGTTTCTG+AGG - chr5_3:17983490-17983509 Msa0803010:five_prime_UTR 35.0%
! GTGTTTGAGATCCAATTTGA+TGG - chr5_3:17983614-17983633 Msa0803010:five_prime_UTR 35.0%
ACTGATTGTAGCCATCAAAT+TGG + chr5_3:17983628-17983647 None:intergenic 35.0%
TACAATCAGTGACATACAGT+CGG - chr5_3:17983638-17983657 Msa0803010:five_prime_UTR 35.0%
AATTCTTTGACCCTTCTTAG+GGG + chr5_3:17983679-17983698 None:intergenic 35.0%
AACATGGATAGACAAAGAGT+TGG + chr5_3:17984140-17984159 None:intergenic 35.0%
TCTTTGTCTATCCATGTTGT+GGG - chr5_3:17984142-17984161 Msa0803010:five_prime_UTR 35.0%
CAGATTCTGTGAACATTTCA+TGG + chr5_3:17984185-17984204 None:intergenic 35.0%
!! ATATTGATTTGGCTTCATGG+AGG - chr5_3:17984212-17984231 Msa0803010:five_prime_UTR 35.0%
AAAAATGAAATGCCTACAGC+AGG - chr5_3:17984291-17984310 Msa0803010:five_prime_UTR 35.0%
! GGCATATTTGCAGAAGTTTT+TGG - chr5_3:17984384-17984403 Msa0803010:five_prime_UTR 35.0%
! AGGTCTTTTGGCGATATTTT+CGG - chr5_3:17984489-17984508 Msa0803010:five_prime_UTR 35.0%
!! GGCAATTTATTTTCAATGGG+AGG + chr5_3:17984570-17984589 None:intergenic 35.0%
AGCCTTGAGGAACTTTATAA+AGG - chr5_3:17984594-17984613 Msa0803010:five_prime_UTR 35.0%
! CCTTGAGATCTTCATCTTTT+TGG + chr5_3:17984625-17984644 None:intergenic 35.0%
CCAAAAAGATGAAGATCTCA+AGG - chr5_3:17984622-17984641 Msa0803010:five_prime_UTR 35.0%
GATGTGAATTAAAAAGCCAG+GGG + chr5_3:17984680-17984699 None:intergenic 35.0%
!!! GCAGAATGAGAGTTTTTTGT+TGG - chr5_3:17984738-17984757 Msa0803010:intron 35.0%
ACTTGTAGACACACATGAAA+GGG + chr5_3:17984921-17984940 None:intergenic 35.0%
TACTTGTAGACACACATGAA+AGG + chr5_3:17984922-17984941 None:intergenic 35.0%
ATTGTTAGTATTTCCTCCAC+AGG + chr5_3:17984995-17985014 None:intergenic 35.0%
CTAACAATTGAAATCCAACC+AGG - chr5_3:17985007-17985026 Msa0803010:intron 35.0%
AAAATCACTTTCCCAGAGAA+AGG - chr5_3:17985046-17985065 Msa0803010:intron 35.0%
GTTGTTCATTTCCTTTCTCT+GGG + chr5_3:17985060-17985079 None:intergenic 35.0%
! ATCCAAAGTAGTAAGTTGGA+AGG + chr5_3:17985218-17985237 None:intergenic 35.0%
TTCCAACTTACTACTTTGGA+TGG - chr5_3:17985217-17985236 Msa0803010:intron 35.0%
TGTGAAGGATTCTTGGAAAT+TGG + chr5_3:17985316-17985335 None:intergenic 35.0%
TACTATACACAAGATGCACT+TGG + chr5_3:17985453-17985472 None:intergenic 35.0%
TTCGAATTCATCTCCGATGT+CGG - chr5_3:17980252-17980271 Msa0803010:three_prime_UTR 40.0%
GCCATGTTACCTTGATTTAC+TGG + chr5_3:17980635-17980654 None:intergenic 40.0%
! GGTGAAGCATTTCATCAAAC+GGG + chr5_3:17980759-17980778 None:intergenic 40.0%
! GGGTGAAGCATTTCATCAAA+CGG + chr5_3:17980760-17980779 None:intergenic 40.0%
GTGTGTTCAATGTTGGAGTT+AGG + chr5_3:17980798-17980817 None:intergenic 40.0%
AATCACCGTGTGTTCAATGT+TGG + chr5_3:17980805-17980824 None:intergenic 40.0%
AGATACTACACTGAATCTGG+TGG + chr5_3:17980850-17980869 None:intergenic 40.0%
GCAACAGATGAGTATAGGAA+TGG - chr5_3:17981033-17981052 Msa0803010:intron 40.0%
! CTTTCGGTGCAATGATTCAT+AGG - chr5_3:17981076-17981095 Msa0803010:CDS 40.0%
AATCAGTTTAGGCAAGCTGA+AGG - chr5_3:17981111-17981130 Msa0803010:CDS 40.0%
AATGAAGCAAGAAGATTGCG+AGG - chr5_3:17981146-17981165 Msa0803010:CDS 40.0%
GGAGGAAAACCATGTGAAAA+AGG - chr5_3:17981314-17981333 Msa0803010:CDS 40.0%
TTACAAGGAGATGCGAGAAA+AGG - chr5_3:17981347-17981366 Msa0803010:CDS 40.0%
TACAAGGAGATGCGAGAAAA+GGG - chr5_3:17981348-17981367 Msa0803010:CDS 40.0%
GCGCCTTGATCAAAATATTG+AGG + chr5_3:17981395-17981414 None:intergenic 40.0%
CATATGTATACGAATCAGGC+TGG + chr5_3:17981485-17981504 None:intergenic 40.0%
! CAGCCTGATTCGTATACATA+TGG - chr5_3:17981483-17981502 Msa0803010:intron 40.0%
AAAGGAACTGTTGGATGAGA+TGG - chr5_3:17981551-17981570 Msa0803010:intron 40.0%
TGGACATTCTTCACAAGCAA+TGG - chr5_3:17981743-17981762 Msa0803010:intron 40.0%
! AAGACGTCTTTTGCCTAACA+TGG - chr5_3:17981788-17981807 Msa0803010:intron 40.0%
AAGCTGTAGAGATTCTTGAC+AGG - chr5_3:17981862-17981881 Msa0803010:intron 40.0%
TAGAGATTCTTGACAGGATG+CGG - chr5_3:17981868-17981887 Msa0803010:intron 40.0%
ATGTACGGGAGAATCATAAG+CGG - chr5_3:17981918-17981937 Msa0803010:intron 40.0%
TTCATTGATGAGATGGCTCT+TGG - chr5_3:17981978-17981997 Msa0803010:intron 40.0%
ATGCATAACATGGTTGTCCA+AGG - chr5_3:17982044-17982063 Msa0803010:intron 40.0%
TACAATTGGAATGAGCGAGT+TGG + chr5_3:17982089-17982108 None:intergenic 40.0%
TGTATCTTAGCATGCGTACT+AGG - chr5_3:17982105-17982124 Msa0803010:intron 40.0%
GTATCTTAGCATGCGTACTA+GGG - chr5_3:17982106-17982125 Msa0803010:intron 40.0%
TATCTTAGCATGCGTACTAG+GGG - chr5_3:17982107-17982126 Msa0803010:intron 40.0%
!! GAATTCGAGTAGCTTTGTTC+AGG + chr5_3:17982193-17982212 None:intergenic 40.0%
GAACAAAGCTACTCGAATTC+TGG - chr5_3:17982193-17982212 Msa0803010:intron 40.0%
CTGGAGGAGATGATATTAGA+TGG - chr5_3:17982212-17982231 Msa0803010:intron 40.0%
GATATTAGATGGCTGCATTC+CGG - chr5_3:17982223-17982242 Msa0803010:intron 40.0%
!! TAATGTGTGGACTTTGGGAT+CGG - chr5_3:17982267-17982286 Msa0803010:intron 40.0%
!! AAGCAGAAGTTTGTTGAAGC+TGG - chr5_3:17982332-17982351 Msa0803010:CDS 40.0%
!! AGCAGAAGTTTGTTGAAGCT+GGG - chr5_3:17982333-17982352 Msa0803010:CDS 40.0%
AATGTGTGGACTTTCTCTGA+TGG - chr5_3:17982383-17982402 Msa0803010:CDS 40.0%
!! GTAGATTTGCTGTGCGTAAT+TGG - chr5_3:17982448-17982467 Msa0803010:exon 40.0%
CCTAATTACTGGAACTGACA+AGG + chr5_3:17982686-17982705 None:intergenic 40.0%
CCTTGTCAGTTCCAGTAATT+AGG - chr5_3:17982683-17982702 Msa0803010:five_prime_UTR 40.0%
! TTTTGACACACCATGTCTGT+CGG - chr5_3:17982963-17982982 Msa0803010:five_prime_UTR 40.0%
! GAAAGCAAAGTAGTGGAAGA+TGG - chr5_3:17983249-17983268 Msa0803010:five_prime_UTR 40.0%
! AAAGTAGTGGAAGATGGGTT+TGG - chr5_3:17983255-17983274 Msa0803010:five_prime_UTR 40.0%
ACTCATATCCGAAGCATATG+AGG - chr5_3:17983411-17983430 Msa0803010:five_prime_UTR 40.0%
ATACAGTCGGATGAAAACTG+AGG - chr5_3:17983651-17983670 Msa0803010:five_prime_UTR 40.0%
AAATAGCGCCACATTCAGAT+TGG + chr5_3:17983764-17983783 None:intergenic 40.0%
TTACATGGCACTCCTTACTT+AGG + chr5_3:17983834-17983853 None:intergenic 40.0%
ATGTAAGCATCATTGGTCCA+GGG - chr5_3:17983848-17983867 Msa0803010:five_prime_UTR 40.0%
CTCTTTGTCTATCCATGTTG+TGG - chr5_3:17984141-17984160 Msa0803010:five_prime_UTR 40.0%
CTTTGTCTATCCATGTTGTG+GGG - chr5_3:17984143-17984162 Msa0803010:five_prime_UTR 40.0%
CCATCATGAGTTTGGAAGTA+TGG + chr5_3:17984330-17984349 None:intergenic 40.0%
CCATACTTCCAAACTCATGA+TGG - chr5_3:17984327-17984346 Msa0803010:five_prime_UTR 40.0%
AATATGCCATCTGCACTTCT+GGG + chr5_3:17984372-17984391 None:intergenic 40.0%
AAATATGCCATCTGCACTTC+TGG + chr5_3:17984373-17984392 None:intergenic 40.0%
!!! TTTGGCTTTTCAAGCCCTTA+TGG - chr5_3:17984402-17984421 Msa0803010:five_prime_UTR 40.0%
TCATTCCCATTCCTCCATAA+GGG + chr5_3:17984419-17984438 None:intergenic 40.0%
TTATGGAGGAATGGGAATGA+GGG - chr5_3:17984419-17984438 Msa0803010:five_prime_UTR 40.0%
GAAAATATCGCCAAAAGACC+TGG + chr5_3:17984490-17984509 None:intergenic 40.0%
AGGGAAATTGCATATGCAAG+TGG - chr5_3:17984642-17984661 Msa0803010:five_prime_UTR 40.0%
GGGAAATTGCATATGCAAGT+GGG - chr5_3:17984643-17984662 Msa0803010:five_prime_UTR 40.0%
TAGACACACATGAAAGGGAA+CGG + chr5_3:17984916-17984935 None:intergenic 40.0%
! TTTTGCTGCAAACACACATG+CGG + chr5_3:17984966-17984985 None:intergenic 40.0%
GGTTGTTCATTTCCTTTCTC+TGG + chr5_3:17985061-17985080 None:intergenic 40.0%
CACCTTCCAACTTACTACTT+TGG - chr5_3:17985213-17985232 Msa0803010:intron 40.0%
GTCCATCCAAAGTAGTAAGT+TGG + chr5_3:17985222-17985241 None:intergenic 40.0%
CTGACCATTGCCATAGAAAA+TGG - chr5_3:17985247-17985266 Msa0803010:intron 40.0%
TGATCCATCCTATGAAGAAG+TGG - chr5_3:17985273-17985292 Msa0803010:intron 40.0%
TTCCAAGAATCCTTCACAGA+AGG - chr5_3:17985318-17985337 Msa0803010:intron 40.0%
TCCAAGAATCCTTCACAGAA+GGG - chr5_3:17985319-17985338 Msa0803010:intron 40.0%
CTAAGATTACCCTTCTGTGA+AGG + chr5_3:17985331-17985350 None:intergenic 40.0%
CTTCACAGAAGGGTAATCTT+AGG - chr5_3:17985329-17985348 Msa0803010:intron 40.0%
ACACAAGATGCACTTGGTTA+TGG + chr5_3:17985447-17985466 None:intergenic 40.0%
CGTCACGATCACAACACTTT+CGG - chr5_3:17981060-17981079 Msa0803010:intron 45.0%
GCAAGAAGATTGCGAGGTTA+CGG - chr5_3:17981152-17981171 Msa0803010:CDS 45.0%
GAAGTTATGGACGTGTGCAT+AGG - chr5_3:17981199-17981218 Msa0803010:CDS 45.0%
AAAACCCTGATGGCATCAAG+TGG + chr5_3:17981225-17981244 None:intergenic 45.0%
GTAAGGTAAGACTTCTGCGT+CGG + chr5_3:17981276-17981295 None:intergenic 45.0%
GACGCAGAAGTCTTACCTTA+CGG - chr5_3:17981275-17981294 Msa0803010:CDS 45.0%
TTGAGGGAAACAACACTTGG+TGG + chr5_3:17981378-17981397 None:intergenic 45.0%
TTTCGTGAAATGCCCAATCG+TGG - chr5_3:17981456-17981475 Msa0803010:CDS 45.0%
TAGTCAGGCAAAGGAACTGT+TGG - chr5_3:17981542-17981561 Msa0803010:intron 45.0%
TTGGATGAGATGGAGGAGAA+AGG - chr5_3:17981561-17981580 Msa0803010:intron 45.0%
AAGGGTTGAAACCAGATGCA+GGG - chr5_3:17981895-17981914 Msa0803010:intron 45.0%
AAACCAGATGCAGGGATGTA+CGG - chr5_3:17981903-17981922 Msa0803010:intron 45.0%
ATTGATGAGATGGCTCTTGG+CGG - chr5_3:17981981-17982000 Msa0803010:intron 45.0%
TCTCACCTAATCGAGCAAGT+TGG - chr5_3:17982006-17982025 Msa0803010:intron 45.0%
! AAGCTCCAACTTGCTCGATT+AGG + chr5_3:17982014-17982033 None:intergenic 45.0%
!! AGGGGTATCTCTGTTGAGAT+TGG - chr5_3:17982125-17982144 Msa0803010:intron 45.0%
CAAAGCTACTCGAATTCTGG+AGG - chr5_3:17982196-17982215 Msa0803010:intron 45.0%
ACATTCCACATTCCCTCATC+CGG + chr5_3:17982245-17982264 None:intergenic 45.0%
TGGGATCGGAAAAAAGTTCG+AGG - chr5_3:17982281-17982300 Msa0803010:intron 45.0%
!! GATTTGCTGTGCGTAATTGG+AGG - chr5_3:17982451-17982470 Msa0803010:exon 45.0%
! AGAGTGTCTACAAACAGAGC+AGG + chr5_3:17982493-17982512 None:intergenic 45.0%
!!! GATTTTCCATGGTTCTAGCC+TGG - chr5_3:17982569-17982588 Msa0803010:five_prime_UTR 45.0%
GTATGTTTGCCTTATCCACC+AGG + chr5_3:17982590-17982609 None:intergenic 45.0%
!! CTTATCAGGGTGCCATTTCA+TGG + chr5_3:17983353-17983372 None:intergenic 45.0%
AAACTGAGGATCCCCTAAGA+AGG - chr5_3:17983665-17983684 Msa0803010:five_prime_UTR 45.0%
AACTGAGGATCCCCTAAGAA+GGG - chr5_3:17983666-17983685 Msa0803010:five_prime_UTR 45.0%
GAGTGCCATGTAAGCATCAT+TGG - chr5_3:17983841-17983860 Msa0803010:five_prime_UTR 45.0%
CTGGACCAATGATGCTTACA+TGG + chr5_3:17983849-17983868 None:intergenic 45.0%
CATGTAAGCATCATTGGTCC+AGG - chr5_3:17983847-17983866 Msa0803010:five_prime_UTR 45.0%
! GTTTTTCCATATACCACGGC+CGG + chr5_3:17983882-17983901 None:intergenic 45.0%
GTTGCACGTAGATGATACCT+TGG - chr5_3:17983964-17983983 Msa0803010:five_prime_UTR 45.0%
TCTATCCATGTTGTGGGGAA+TGG - chr5_3:17984148-17984167 Msa0803010:five_prime_UTR 45.0%
CTATCCATGTTGTGGGGAAT+GGG - chr5_3:17984149-17984168 Msa0803010:five_prime_UTR 45.0%
TATCCATGTTGTGGGGAATG+GGG - chr5_3:17984150-17984169 Msa0803010:five_prime_UTR 45.0%
TCCAAACTCATGATGGCAGA+AGG - chr5_3:17984334-17984353 Msa0803010:five_prime_UTR 45.0%
ACCTTCTGCCATCATGAGTT+TGG + chr5_3:17984338-17984357 None:intergenic 45.0%
CTCATGATGGCAGAAGGTTT+AGG - chr5_3:17984340-17984359 Msa0803010:five_prime_UTR 45.0%
! TTCAATCCCAGAAGTGCAGA+TGG - chr5_3:17984363-17984382 Msa0803010:five_prime_UTR 45.0%
TTCAAGCCCTTATGGAGGAA+TGG - chr5_3:17984410-17984429 Msa0803010:five_prime_UTR 45.0%
TCAAGCCCTTATGGAGGAAT+GGG - chr5_3:17984411-17984430 Msa0803010:five_prime_UTR 45.0%
CTCATTCCCATTCCTCCATA+AGG + chr5_3:17984420-17984439 None:intergenic 45.0%
CTTATGGAGGAATGGGAATG+AGG - chr5_3:17984418-17984437 Msa0803010:five_prime_UTR 45.0%
TATGGAGGAATGGGAATGAG+GGG - chr5_3:17984420-17984439 Msa0803010:five_prime_UTR 45.0%
TAAATTGCCTTGCAGCCTTG+AGG - chr5_3:17984581-17984600 Msa0803010:five_prime_UTR 45.0%
TAAAGTTCCTCAAGGCTGCA+AGG + chr5_3:17984591-17984610 None:intergenic 45.0%
AGACACACATGAAAGGGAAC+GGG + chr5_3:17984915-17984934 None:intergenic 45.0%
TTTGCTGCAAACACACATGC+GGG + chr5_3:17984965-17984984 None:intergenic 45.0%
TGCAGCAAAAACTGTACCTG+TGG - chr5_3:17984976-17984995 Msa0803010:intron 45.0%
AGCAAAAACTGTACCTGTGG+AGG - chr5_3:17984979-17984998 Msa0803010:intron 45.0%
CAATTGAAATCCAACCAGGC+TGG - chr5_3:17985011-17985030 Msa0803010:intron 45.0%
AATCCAACCAGGCTGGAAAA+AGG - chr5_3:17985018-17985037 Msa0803010:intron 45.0%
ATCCAACCAGGCTGGAAAAA+GGG - chr5_3:17985019-17985038 Msa0803010:intron 45.0%
CTTACTACTTTGGATGGACG+AGG - chr5_3:17985223-17985242 Msa0803010:intron 45.0%
GCAACCACTTCTTCATAGGA+TGG + chr5_3:17985280-17985299 None:intergenic 45.0%
TCCTATGAAGAAGTGGTTGC+CGG - chr5_3:17985280-17985299 Msa0803010:intron 45.0%
ACCCTTCTGTGAAGGATTCT+TGG + chr5_3:17985323-17985342 None:intergenic 45.0%
CAACATCACATTCCCTAGCA+CGG - chr5_3:17985360-17985379 Msa0803010:intron 45.0%
TTTCAGCATCAACCGTGCTA+GGG + chr5_3:17985375-17985394 None:intergenic 45.0%
GATTGATCGCACGAGAATGC+AGG + chr5_3:17980117-17980136 None:intergenic 50.0%
!! GTGAACGGAAAGCGTTAGGA+TGG + chr5_3:17980225-17980244 None:intergenic 50.0%
!! TGTGGTGAACGGAAAGCGTT+AGG + chr5_3:17980229-17980248 None:intergenic 50.0%
GAGAGAGAACTGACCGACAT+CGG + chr5_3:17980268-17980287 None:intergenic 50.0%
AGAAGATTGCGAGGTTACGG+AGG - chr5_3:17981155-17981174 Msa0803010:CDS 50.0%
ATAGGCCACTTGATGCCATC+AGG - chr5_3:17981217-17981236 Msa0803010:CDS 50.0%
TAGGCCACTTGATGCCATCA+GGG - chr5_3:17981218-17981237 Msa0803010:CDS 50.0%
GGAACTGTTGGATGAGATGG+AGG - chr5_3:17981554-17981573 Msa0803010:intron 50.0%
TTGACAGGATGCGGCTTCAA+GGG - chr5_3:17981877-17981896 Msa0803010:intron 50.0%
CAAGGGTTGAAACCAGATGC+AGG - chr5_3:17981894-17981913 Msa0803010:intron 50.0%
AACCAGATGCAGGGATGTAC+GGG - chr5_3:17981904-17981923 Msa0803010:intron 50.0%
GAAAGCTGCAAGCAGCACAA+AGG + chr5_3:17981944-17981963 None:intergenic 50.0%
AGGAGCTACTGAGCTATTGC+TGG - chr5_3:17982301-17982320 Msa0803010:CDS 50.0%
!! TTTCCATGGTTCTAGCCTGG+TGG - chr5_3:17982572-17982591 Msa0803010:five_prime_UTR 50.0%
TATCCACCAGGCTAGAACCA+TGG + chr5_3:17982578-17982597 None:intergenic 50.0%
!! TGGTTCTAGCCTGGTGGATA+AGG - chr5_3:17982578-17982597 Msa0803010:five_prime_UTR 50.0%
! ACCATGTCTGTCGGTGTTTG+TGG - chr5_3:17982972-17982991 Msa0803010:five_prime_UTR 50.0%
TCCACAAACACCGACAGACA+TGG + chr5_3:17982976-17982995 None:intergenic 50.0%
TTGGTCCAGGGTTTGATCTC+CGG - chr5_3:17983860-17983879 Msa0803010:five_prime_UTR 50.0%
!! GGCTTTTCAAGCCCTTATGG+AGG - chr5_3:17984405-17984424 Msa0803010:five_prime_UTR 50.0%
! TTCCCTTTTTCCAGCCTGGT+TGG + chr5_3:17985024-17985043 None:intergenic 50.0%
! TTCGTTCCCTTTTTCCAGCC+TGG + chr5_3:17985028-17985047 None:intergenic 50.0%
GGAAATTGGCATCCTTTCGC+CGG + chr5_3:17985302-17985321 None:intergenic 50.0%
GTTTCAGCATCAACCGTGCT+AGG + chr5_3:17985376-17985395 None:intergenic 50.0%
! CAAGGCGCTCTGCAAAAACG+AGG - chr5_3:17981407-17981426 Msa0803010:CDS 55.0%
TCAGGCTGGCATCCACGATT+GGG + chr5_3:17981471-17981490 None:intergenic 55.0%
ATCAGGCTGGCATCCACGAT+TGG + chr5_3:17981472-17981491 None:intergenic 55.0%
CTTGACAGGATGCGGCTTCA+AGG - chr5_3:17981876-17981895 Msa0803010:intron 55.0%
AGATGGCTGCATTCCGGATG+AGG - chr5_3:17982229-17982248 Msa0803010:intron 55.0%
GATGGCTGCATTCCGGATGA+GGG - chr5_3:17982230-17982249 Msa0803010:intron 55.0%
GCATTCCGGATGAGGGAATG+TGG - chr5_3:17982237-17982256 Msa0803010:intron 55.0%
TGATCTCCGGCCGTGGTATA+TGG - chr5_3:17983873-17983892 Msa0803010:five_prime_UTR 55.0%
CATCCCCATTCCCCACAACA+TGG + chr5_3:17984156-17984175 None:intergenic 55.0%
! TCGTGGGTGTCCAGGTCTTT+TGG - chr5_3:17984477-17984496 Msa0803010:five_prime_UTR 55.0%
GAGTCAAGCTCCAAGACGCA+AGG - chr5_3:17984542-17984561 Msa0803010:five_prime_UTR 55.0%
GTGGGTAAATGCTCTTCCCC+TGG - chr5_3:17984661-17984680 Msa0803010:five_prime_UTR 55.0%
GCCGGCAACCACTTCTTCAT+AGG + chr5_3:17985284-17985303 None:intergenic 55.0%
AAGAAGTGGTTGCCGGCGAA+AGG - chr5_3:17985287-17985306 Msa0803010:intron 55.0%
CTCCCGTACATCCCTGCATC+TGG + chr5_3:17981909-17981928 None:intergenic 60.0%
GCTGCACTGTCACCTGCTGT+AGG + chr5_3:17984306-17984325 None:intergenic 60.0%
GGAGGAATGGGAATGAGGGG+CGG - chr5_3:17984423-17984442 Msa0803010:five_prime_UTR 60.0%
! TGCAGAGGCATGGGCATGAG+AGG - chr5_3:17984450-17984469 Msa0803010:five_prime_UTR 60.0%
TGGGCATGAGAGGTCAGTCG+TGG - chr5_3:17984460-17984479 Msa0803010:five_prime_UTR 60.0%
GGGCATGAGAGGTCAGTCGT+GGG - chr5_3:17984461-17984480 Msa0803010:five_prime_UTR 60.0%
!! ATGGGAGGTGCCTTGCGTCT+TGG + chr5_3:17984555-17984574 None:intergenic 60.0%
CACGGCCGGAGATCAAACCC+TGG + chr5_3:17983868-17983887 None:intergenic 65.0%
CAGGGTTTGATCTCCGGCCG+TGG - chr5_3:17983866-17983885 Msa0803010:five_prime_UTR 65.0%
GGAATGGGAATGAGGGGCGG+CGG - chr5_3:17984426-17984445 Msa0803010:five_prime_UTR 65.0%
GAGGTCAGTCGTGGGTGTCC+AGG - chr5_3:17984469-17984488 Msa0803010:five_prime_UTR 65.0%
ATGAGGGGCGGCGGCTGCAG+AGG - chr5_3:17984435-17984454 Msa0803010:five_prime_UTR 75.0%
! GGCGGCGGCTGCAGAGGCAT+GGG - chr5_3:17984441-17984460 Msa0803010:five_prime_UTR 75.0%
! GGGCGGCGGCTGCAGAGGCA+TGG - chr5_3:17984440-17984459 Msa0803010:five_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 17980095 17985635 17980095 ID=Msa0803010;Name=Msa0803010
chr5_3 mRNA 17980095 17985635 17980095 ID=Msa0803010-mRNA-1;Parent=Msa0803010;Name=Msa0803010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=2490|0.6|0.66|1|0.2|0.16|6|224|336
chr5_3 exon 17980095 17980749 17980095 ID=Msa0803010-mRNA-1:exon:7372;Parent=Msa0803010-mRNA-1
chr5_3 exon 17981070 17981239 17981070 ID=Msa0803010-mRNA-1:exon:7371;Parent=Msa0803010-mRNA-1
chr5_3 exon 17981252 17981496 17981252 ID=Msa0803010-mRNA-1:exon:7370;Parent=Msa0803010-mRNA-1
chr5_3 exon 17982298 17984690 17982298 ID=Msa0803010-mRNA-1:exon:7369;Parent=Msa0803010-mRNA-1
chr5_3 exon 17985086 17985168 17985086 ID=Msa0803010-mRNA-1:exon:7368;Parent=Msa0803010-mRNA-1
chr5_3 exon 17985457 17985635 17985457 ID=Msa0803010-mRNA-1:exon:7367;Parent=Msa0803010-mRNA-1
chr5_3 five_prime_UTR 17985457 17985635 17985457 ID=Msa0803010-mRNA-1:five_prime_utr;Parent=Msa0803010-mRNA-1
chr5_3 five_prime_UTR 17985086 17985168 17985086 ID=Msa0803010-mRNA-1:five_prime_utr;Parent=Msa0803010-mRNA-1
chr5_3 five_prime_UTR 17982463 17984690 17982463 ID=Msa0803010-mRNA-1:five_prime_utr;Parent=Msa0803010-mRNA-1
chr5_3 CDS 17982298 17982462 17982298 ID=Msa0803010-mRNA-1:cds;Parent=Msa0803010-mRNA-1
chr5_3 CDS 17981252 17981496 17981252 ID=Msa0803010-mRNA-1:cds;Parent=Msa0803010-mRNA-1
chr5_3 CDS 17981070 17981239 17981070 ID=Msa0803010-mRNA-1:cds;Parent=Msa0803010-mRNA-1
chr5_3 CDS 17980319 17980749 17980319 ID=Msa0803010-mRNA-1:cds;Parent=Msa0803010-mRNA-1
chr5_3 three_prime_UTR 17980095 17980318 17980095 ID=Msa0803010-mRNA-1:three_prime_utr;Parent=Msa0803010-mRNA-1
Gene Sequence

>Msa0803010

ATGGGTTTGGATTACTATGAGATTTTGGAGGTTGACAAGAATGCTACAGATGATGAGTTGAAGAAAGCATATAGAAAACTTGCCATGAAATGGCACCCTGATAAGAATCCTGACAATAAGAATGATGCTGAGACTAAATTCAAACTCATATCCGAAGCATATGAGGTTCTAAGTGATCCGCAAAAGAGAGCAATTTATGATCAGTATGAAGAAAGCAGCCTTAAAAATGAAATGCCTACAGCAGGTGACAGTGCAGCTCCATACTTCCAAACTCATGATGGCAGAAGGTTTAGGTTCAATCCCAGAAGTGCAGATGGCATATTTGCAGAAGTTTTTGGCTTTTCAAGCCCTTATGGAGGAATGGGAATGAGGGGCGGCGGCTGCAGAGGCATGGGCATGAGAGGTCAGTCGTCTTTTGGCGATATTTTCGGCAAAGATGTATTTGGAGAAAGCAGACAAACGAGTCAAGCTCCAAGACGCAAGGCACCTCCCATTGAAAATAAATTGCCTTGCAGCCTTGAGGAACTTTATAAAGGTACTACCAAAAAGATGAAGATCTCAAGGGAAATTGCATATGCAACAAAAACTGTACCTGTGGAGGAAATACTAACAATTGAAATCCAACCAGGCTGGAAAAAGGGAACGAAAATCACTTTCCCAGAGAAAGGAAATGAACAACCAAATGTCATTGCTGCAGATATCGTATTCATTATTGACGAGAAACCTCACAATGTATTTACAAGACAAGGTAATGATTTGGTTATGACACAAAAGATATTACTTGCAGAAGGAGAAGCTCTAAGCAGAAGCTACACCTTCCAACTTACTACTTTGGATGGACGAGGTCTGACCATTGCCATAGAAAATGGAATTGATCCATCCTATGAAGAAGTGGTTGCCGGCGAAAGGATGCCAATTTCCAAGAATCCTTCACAGAAGGGTAATCTTAGGATCAAATTCAACATCACATTCCCTAGCACGGTTGATGCTGAAACAGAAAGCCAGAACTAA
Protein sequence

>Msa0803010

MGLDYYEILEVDKNATDDELKKAYRKLAMKWHPDKNPDNKNDAETKFKLISEAYEVLSDPQKRAIYDQYEESSLKNEMPTAGDSAAPYFQTHDGRRFRFNPRSADGIFAEVFGFSSPYGGMGMRGGGCRGMGMRGQSSFGDIFGKDVFGESRQTSQAPRRKAPPIENKLPCSLEELYKGTTKKMKISREIAYATKTVPVEEILTIEIQPGWKKGTKITFPEKGNEQPNVIAADIVFIIDEKPHNVFTRQGNDLVMTQKILLAEGEALSRSYTFQLTTLDGRGLTIAIENGIDPSYEEVVAGERMPISKNPSQKGNLRIKFNITFPSTVDAETESQN*