Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034480 | sp|Q9ZNV8|AHP2_ARATH | 54.286 | 140 | 63 | 1 | 3 | 141 | 7 | 146 | 2.88e-51 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034480 | G7I2T8 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 8.53e-104 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034480 | Msa0043980 | 0.806836 | 6.780283e-50 | -8.615850e-47 |
| Msa0034480 | Msa0083040 | 0.800092 | 1.694809e-48 | -8.615850e-47 |
| Msa0034480 | Msa0092410 | 0.806689 | 7.279744e-50 | -8.615850e-47 |
| Msa0034480 | Msa0126190 | 0.803937 | 2.745880e-49 | -8.615850e-47 |
| Msa0034480 | Msa0138020 | 0.808709 | 2.710589e-50 | -8.615850e-47 |
| Msa0034480 | Msa0172080 | 0.819603 | 1.065142e-52 | -8.615850e-47 |
| Msa0034480 | Msa0173390 | 0.803385 | 3.575063e-49 | -8.615850e-47 |
| Msa0034480 | Msa0175360 | 0.864042 | 1.616319e-64 | -8.615850e-47 |
| Msa0034480 | Msa0206010 | 0.801531 | 8.617054e-49 | -8.615850e-47 |
| Msa0034480 | Msa0222980 | 0.817607 | 3.021307e-52 | -8.615850e-47 |
| Msa0034480 | Msa0227360 | 0.810830 | 9.485821e-51 | -8.615850e-47 |
| Msa0034480 | Msa0240270 | 0.818890 | 1.547753e-52 | -8.615850e-47 |
| Msa0034480 | Msa0241140 | 0.823417 | 1.401192e-53 | -8.615850e-47 |
| Msa0034480 | Msa0257500 | 0.805306 | 1.422767e-49 | -8.615850e-47 |
| Msa0034480 | Msa0262370 | 0.801142 | 1.035259e-48 | -8.615850e-47 |
| Msa0034480 | Msa0264310 | 0.815439 | 9.239317e-52 | -8.615850e-47 |
| Msa0034480 | Msa0269560 | 0.817674 | 2.917857e-52 | -8.615850e-47 |
| Msa0034480 | Msa0270960 | 0.805101 | 1.570309e-49 | -8.615850e-47 |
| Msa0034480 | Msa0302840 | 0.817320 | 3.504781e-52 | -8.615850e-47 |
| Msa0034480 | Msa0326110 | 0.800280 | 1.552212e-48 | -8.615850e-47 |
| Msa0034480 | Msa0363790 | 0.828528 | 8.552831e-55 | -8.615850e-47 |
| Msa0034480 | Msa0366210 | 0.810554 | 1.087827e-50 | -8.615850e-47 |
| Msa0034480 | Msa0374340 | -0.800457 | 1.428195e-48 | -8.615850e-47 |
| Msa0034480 | Msa0388730 | 0.805638 | 1.212105e-49 | -8.615850e-47 |
| Msa0034480 | Msa0389910 | 0.821221 | 4.531921e-53 | -8.615850e-47 |
| Msa0034480 | Msa0414140 | 0.830639 | 2.621673e-55 | -8.615850e-47 |
| Msa0034480 | Msa0422180 | 0.804266 | 2.345812e-49 | -8.615850e-47 |
| Msa0034480 | Msa0427580 | 0.807497 | 4.911473e-50 | -8.615850e-47 |
| Msa0034480 | Msa0448610 | 0.815454 | 9.166830e-52 | -8.615850e-47 |
| Msa0034480 | Msa0455760 | 0.839355 | 1.664988e-57 | -8.615850e-47 |
| Msa0034480 | Msa0457990 | 0.815763 | 7.824024e-52 | -8.615850e-47 |
| Msa0034480 | Msa0486690 | 0.836583 | 8.595281e-57 | -8.615850e-47 |
| Msa0034480 | Msa0566350 | 0.802964 | 4.369860e-49 | -8.615850e-47 |
| Msa0034480 | Msa0566750 | 0.801087 | 1.062315e-48 | -8.615850e-47 |
| Msa0034480 | Msa0624060 | 0.804063 | 2.585202e-49 | -8.615850e-47 |
| Msa0034480 | Msa0704920 | 0.804124 | 2.511412e-49 | -8.615850e-47 |
| Msa0034480 | Msa0705990 | 0.801335 | 9.450913e-49 | -8.615850e-47 |
| Msa0034480 | Msa0721340 | 0.801120 | 1.046061e-48 | -8.615850e-47 |
| Msa0034480 | Msa0749440 | 0.800882 | 1.170054e-48 | -8.615850e-47 |
| Msa0034480 | Msa0758260 | 0.806552 | 7.782116e-50 | -8.615850e-47 |
| Msa0034480 | Msa0763890 | 0.816076 | 6.662796e-52 | -8.615850e-47 |
| Msa0034480 | Msa0763920 | 0.816880 | 4.401461e-52 | -8.615850e-47 |
| Msa0034480 | Msa0773590 | 0.823761 | 1.163956e-53 | -8.615850e-47 |
| Msa0034480 | Msa0811040 | 0.801999 | 6.906110e-49 | -8.615850e-47 |
| Msa0034480 | Msa0844110 | 0.803691 | 3.089032e-49 | -8.615850e-47 |
| Msa0034480 | Msa0847470 | 0.804642 | 1.958481e-49 | -8.615850e-47 |
| Msa0034480 | Msa0863720 | 0.800913 | 1.153143e-48 | -8.615850e-47 |
| Msa0034480 | Msa0894710 | 0.804557 | 2.040533e-49 | -8.615850e-47 |
| Msa0034480 | Msa0898750 | 0.811416 | 7.079640e-51 | -8.615850e-47 |
| Msa0034480 | Msa0928130 | 0.801463 | 8.899434e-49 | -8.615850e-47 |
| Msa0034480 | Msa0960390 | 0.803018 | 4.259093e-49 | -8.615850e-47 |
| Msa0034480 | Msa0964310 | 0.821150 | 4.704004e-53 | -8.615850e-47 |
| Msa0034480 | Msa0992580 | 0.807089 | 5.993742e-50 | -8.615850e-47 |
| Msa0034480 | Msa0992600 | 0.817385 | 3.390015e-52 | -8.615850e-47 |
| Msa0034480 | Msa1024680 | 0.817248 | 3.639375e-52 | -8.615850e-47 |
| Msa0034480 | Msa1063400 | 0.829473 | 5.047159e-55 | -8.615850e-47 |
| Msa0034480 | Msa1063420 | 0.813547 | 2.421847e-51 | -8.615850e-47 |
| Msa0034480 | Msa1107260 | 0.800262 | 1.565177e-48 | -8.615850e-47 |
| Msa0034480 | Msa1126240 | 0.815599 | 8.513716e-52 | -8.615850e-47 |
| Msa0034480 | Msa1143020 | 0.804611 | 1.987735e-49 | -8.615850e-47 |
| Msa0034480 | Msa1244930 | 0.810817 | 9.544974e-51 | -8.615850e-47 |
| Msa0034480 | Msa1270660 | 0.826665 | 2.395087e-54 | -8.615850e-47 |
| Msa0034480 | Msa1270730 | 0.823860 | 1.103592e-53 | -8.615850e-47 |
| Msa0034480 | Msa1307180 | 0.803070 | 4.153980e-49 | -8.615850e-47 |
| Msa0034480 | Msa1332050 | 0.810738 | 9.927579e-51 | -8.615850e-47 |
| Msa0034480 | Msa1335230 | 0.810936 | 8.993459e-51 | -8.615850e-47 |
| Msa0034480 | Msa1368360 | 0.811167 | 8.014535e-51 | -8.615850e-47 |
| Msa0034480 | Msa1369920 | -0.835906 | 1.277371e-56 | -8.615850e-47 |
| Msa0034480 | Msa1371940 | 0.804018 | 2.641946e-49 | -8.615850e-47 |
| Msa0034480 | Msa1412130 | 0.813468 | 2.521042e-51 | -8.615850e-47 |
| Msa0034480 | Msa1423820 | 0.823081 | 1.678401e-53 | -8.615850e-47 |
| Msa0034480 | Msa1425260 | 0.808905 | 2.461346e-50 | -8.615850e-47 |
| Msa0034480 | Msa1430550 | 0.800875 | 1.173525e-48 | -8.615850e-47 |
| Msa0034480 | Msa1432130 | 0.802760 | 4.815189e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034480 | MtrunA17_Chr1g0196361 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 1.64e-107 | 302 |
| Msa0034480 | MtrunA17_Chr1g0191351 | 49.645 | 141 | 71 | 0 | 1 | 141 | 4 | 144 | 3.38e-52 | 162 |
| Msa0034480 | MtrunA17_Chr7g0273321 | 51.471 | 136 | 65 | 1 | 7 | 141 | 6 | 141 | 4.51e-50 | 157 |
| Msa0034480 | MtrunA17_Chr2g0286781 | 55.245 | 143 | 64 | 0 | 3 | 145 | 5 | 147 | 7.71e-50 | 156 |
| Msa0034480 | MtrunA17_Chr2g0331021 | 40.769 | 130 | 77 | 0 | 5 | 134 | 7 | 136 | 8.63e-36 | 120 |
| Msa0034480 | MtrunA17_Chr2g0331011 | 40.769 | 130 | 77 | 0 | 5 | 134 | 7 | 136 | 2.15e-35 | 120 |
| Msa0034480 | MtrunA17_Chr2g0333131 | 47.761 | 134 | 67 | 2 | 13 | 143 | 18 | 151 | 6.35e-30 | 106 |
| Msa0034480 | MtrunA17_Chr4g0003251 | 48.872 | 133 | 63 | 3 | 15 | 143 | 8 | 139 | 5.97e-25 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034480 | AT3G29350.1 | 54.286 | 140 | 63 | 1 | 3 | 141 | 7 | 146 | 2.93e-52 | 163 |
| Msa0034480 | AT1G03430.1 | 52.703 | 148 | 69 | 1 | 3 | 149 | 8 | 155 | 9.21e-52 | 162 |
| Msa0034480 | AT5G39340.1 | 52.703 | 148 | 69 | 1 | 3 | 149 | 7 | 154 | 1.69e-50 | 159 |
| Msa0034480 | AT5G39340.4 | 52.703 | 148 | 69 | 1 | 3 | 149 | 40 | 187 | 5.42e-50 | 158 |
| Msa0034480 | AT5G39340.2 | 52.703 | 148 | 69 | 1 | 3 | 149 | 56 | 203 | 1.20e-49 | 158 |
| Msa0034480 | AT5G39340.3 | 52.703 | 148 | 69 | 1 | 3 | 149 | 56 | 203 | 1.20e-49 | 158 |
| Msa0034480 | AT1G03430.2 | 54.887 | 133 | 59 | 1 | 3 | 134 | 8 | 140 | 1.75e-49 | 156 |
| Msa0034480 | AT3G21510.1 | 55.474 | 137 | 61 | 0 | 5 | 141 | 7 | 143 | 9.06e-48 | 152 |
| Msa0034480 | AT3G16360.2 | 49.587 | 121 | 61 | 0 | 14 | 134 | 11 | 131 | 4.19e-42 | 137 |
| Msa0034480 | AT3G29350.2 | 55.556 | 108 | 47 | 1 | 3 | 109 | 7 | 114 | 9.64e-41 | 132 |
| Msa0034480 | AT3G16360.1 | 49.580 | 119 | 60 | 0 | 18 | 136 | 9 | 127 | 1.51e-40 | 132 |
| Msa0034480 | AT1G80100.1 | 47.015 | 134 | 68 | 2 | 13 | 143 | 18 | 151 | 5.73e-24 | 91.3 |
| Msa0034480 | AT1G80100.3 | 43.704 | 135 | 75 | 1 | 1 | 134 | 6 | 140 | 1.31e-21 | 85.5 |
| Msa0034480 | AT4G04402.1 | 38.060 | 134 | 72 | 3 | 19 | 141 | 24 | 157 | 5.57e-20 | 81.3 |
| Msa0034480 | AT1G80100.2 | 42.857 | 133 | 53 | 3 | 13 | 143 | 18 | 129 | 1.96e-17 | 73.9 |
Find 33 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATAAGTCTCAAGTTTAT+TGG | 0.165458 | 1_1:-62481704 | None:intergenic |
| CAATCTTAAATACCTATTTA+AGG | 0.205789 | 1_1:+62481316 | Msa0034480:CDS |
| TTAAGAAAACTCACCCTTCC+AGG | 0.303814 | 1_1:-62479814 | None:intergenic |
| GATTATTCCTTCAGAATTAG+AGG | 0.326468 | 1_1:+62481603 | Msa0034480:three_prime_UTR |
| TAATAGTACATACCTTAAAT+AGG | 0.352447 | 1_1:-62481328 | None:intergenic |
| AGACATATATGTGCAAATTA+AGG | 0.357159 | 1_1:+62478588 | Msa0034480:five_prime_UTR |
| TTAGAGGATGTTTGAATGTT+GGG | 0.357279 | 1_1:+62481619 | Msa0034480:three_prime_UTR |
| ATTAGAGGATGTTTGAATGT+TGG | 0.391133 | 1_1:+62481618 | Msa0034480:three_prime_UTR |
| ATAACCTCAATCACAAAATC+AGG | 0.417121 | 1_1:-62479077 | None:intergenic |
| CGAAGCTGCTATGTTTCAAC+AGG | 0.430572 | 1_1:+62478832 | Msa0034480:CDS |
| TTCAGAATGACATGATATAA+TGG | 0.436941 | 1_1:+62481801 | Msa0034480:three_prime_UTR |
| TGCTCATGCCCATCAACAAA+AGG | 0.448350 | 1_1:+62479617 | Msa0034480:CDS |
| TATCTGGTCTGGTCTGAATT+CGG | 0.450453 | 1_1:-62478664 | None:intergenic |
| ATGTCTGCAACAATTGCAAC+AGG | 0.460807 | 1_1:+62481274 | Msa0034480:CDS |
| TTTGGTGTCTGTATCTGGTC+TGG | 0.461752 | 1_1:-62478675 | None:intergenic |
| GGATAGAACAGATGTGGATA+AGG | 0.474274 | 1_1:+62481640 | Msa0034480:three_prime_UTR |
| TCTATTTGTTTAAAATTCAC+AGG | 0.488923 | 1_1:-62479594 | None:intergenic |
| GTTGAAACATAGCAGCTTCG+TGG | 0.501753 | 1_1:-62478829 | None:intergenic |
| GCAGCTGCAACAAGAAATCA+AGG | 0.530569 | 1_1:+62481456 | Msa0034480:intron |
| TGCGAGGCTCAGAACCTGGA+AGG | 0.534171 | 1_1:+62479800 | Msa0034480:CDS |
| GCTCATGCCCATCAACAAAA+GGG | 0.561552 | 1_1:+62479618 | Msa0034480:CDS |
| CAAACATCCTCTAATTCTGA+AGG | 0.563687 | 1_1:-62481610 | None:intergenic |
| CCGTTAGATCTATTCACACA+AGG | 0.588634 | 1_1:+62481482 | Msa0034480:CDS |
| CCTTGTGTGAATAGATCTAA+CGG | 0.596362 | 1_1:-62481482 | None:intergenic |
| GCGAGGCTCAGAACCTGGAA+GGG | 0.598860 | 1_1:+62479801 | Msa0034480:CDS |
| CATATATGTGCAAATTAAGG+AGG | 0.604606 | 1_1:+62478591 | Msa0034480:five_prime_UTR |
| AACACATGGATCACTTACAT+AGG | 0.611392 | 1_1:+62478795 | Msa0034480:exon |
| AACAAAAGGGAAGCAGTGCT+AGG | 0.617678 | 1_1:+62479631 | Msa0034480:CDS |
| TTTGTTTGTTTCCGAAAACG+AGG | 0.622533 | 1_1:-62478618 | None:intergenic |
| CTAAAGGGAAAGAAAGTACA+CGG | 0.622666 | 1_1:+62478563 | Msa0034480:five_prime_UTR |
| CGTTAGATCTATTCACACAA+GGG | 0.658003 | 1_1:+62481483 | Msa0034480:CDS |
| ATGTTGGGATAGAACAGATG+TGG | 0.668847 | 1_1:+62481634 | Msa0034480:three_prime_UTR |
| TCGAATCAGAAAATAACACA+TGG | 0.680378 | 1_1:+62478781 | Msa0034480:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAGTACTAAAAATT+TGG | - | chr1_1:62478696-62478715 | None:intergenic | 10.0% |
| !! | TATTATTCTCTTTAATTAAT+TGG | + | chr1_1:62479168-62479187 | Msa0034480:intron | 10.0% |
| !! | TAAGAATACAAAAGAAAAAA+GGG | - | chr1_1:62478916-62478935 | None:intergenic | 15.0% |
| !! | ATAAGAATACAAAAGAAAAA+AGG | - | chr1_1:62478917-62478936 | None:intergenic | 15.0% |
| !!! | AATTTGATATTATTGGTTAT+TGG | + | chr1_1:62478992-62479011 | Msa0034480:intron | 15.0% |
| !!! | ATTTGATATTATTGGTTATT+GGG | + | chr1_1:62478993-62479012 | Msa0034480:intron | 15.0% |
| !! | AACATCTTAATCAATTAAAA+AGG | + | chr1_1:62479315-62479334 | Msa0034480:intron | 15.0% |
| !! | ATTTGAAAAAGAAAAATAAC+AGG | - | chr1_1:62480490-62480509 | None:intergenic | 15.0% |
| !! | AATACAAGCAATATAATATA+CGG | - | chr1_1:62481428-62481447 | None:intergenic | 15.0% |
| !!! | TTTTTGACTTGAAATTGAAA+AGG | - | chr1_1:62478721-62478740 | None:intergenic | 20.0% |
| !!! | TTTGATATTATTGGTTATTG+GGG | + | chr1_1:62478994-62479013 | Msa0034480:intron | 20.0% |
| !! | TAATAGTAATAGTACTTACA+GGG | - | chr1_1:62479153-62479172 | None:intergenic | 20.0% |
| !! | ATAATAGTAATAGTACTTAC+AGG | - | chr1_1:62479154-62479173 | None:intergenic | 20.0% |
| !! | AATTATTGAATAATATGTGC+CGG | + | chr1_1:62479386-62479405 | Msa0034480:intron | 20.0% |
| !!! | TCTATTTGTTTAAAATTCAC+AGG | - | chr1_1:62479597-62479616 | None:intergenic | 20.0% |
| !! | TAAATAAAATCTACTTCCAT+AGG | - | chr1_1:62479707-62479726 | None:intergenic | 20.0% |
| !!! | ATTTATTTGTTAAACAGTGT+TGG | + | chr1_1:62479734-62479753 | Msa0034480:intron | 20.0% |
| !! | ATACAAACAAAAACAATTTG+GGG | - | chr1_1:62480332-62480351 | None:intergenic | 20.0% |
| !! | CATACAAACAAAAACAATTT+GGG | - | chr1_1:62480333-62480352 | None:intergenic | 20.0% |
| !! | TCATACAAACAAAAACAATT+TGG | - | chr1_1:62480334-62480353 | None:intergenic | 20.0% |
| !! | CACATCAATTTATATGTATT+AGG | - | chr1_1:62480393-62480412 | None:intergenic | 20.0% |
| !! | AAAGAAAAATAACAGGAATT+AGG | - | chr1_1:62480483-62480502 | None:intergenic | 20.0% |
| !!! | TCTGATTTGTATTATATGAA+AGG | + | chr1_1:62480798-62480817 | Msa0034480:intron | 20.0% |
| !!! | TGAAAGTCTAAAATTTAAGA+TGG | + | chr1_1:62481028-62481047 | Msa0034480:intron | 20.0% |
| !!! | TCTATTTTATACCTGTTATT+CGG | + | chr1_1:62481059-62481078 | Msa0034480:intron | 20.0% |
| !!! | CAAAAAAAAATGTTATTTGC+AGG | + | chr1_1:62481243-62481262 | Msa0034480:intron | 20.0% |
| !! | CAATCTTAAATACCTATTTA+AGG | + | chr1_1:62481316-62481335 | Msa0034480:CDS | 20.0% |
| !! | TAATAGTACATACCTTAAAT+AGG | - | chr1_1:62481331-62481350 | None:intergenic | 20.0% |
| !!! | GTACTATTACGTTTAATTTT+CGG | + | chr1_1:62481342-62481361 | Msa0034480:intron | 20.0% |
| ! | AGACATATATGTGCAAATTA+AGG | + | chr1_1:62478588-62478607 | Msa0034480:five_prime_UTR | 25.0% |
| ! | ACATGTAACGAAAAGATTAT+AGG | - | chr1_1:62478860-62478879 | None:intergenic | 25.0% |
| !! | TTGATATTATTGGTTATTGG+GGG | + | chr1_1:62478995-62479014 | Msa0034480:intron | 25.0% |
| ! | ATTATTGAATAATATGTGCC+GGG | + | chr1_1:62479387-62479406 | Msa0034480:intron | 25.0% |
| !! | TTTTCTTTGAATTAGATCCT+CGG | - | chr1_1:62480060-62480079 | None:intergenic | 25.0% |
| ! | AAAGTTTGTGCAAAACTTTA+CGG | + | chr1_1:62480574-62480593 | Msa0034480:intron | 25.0% |
| !! | TTTCATTTGGTTTATAGGTA+GGG | - | chr1_1:62480675-62480694 | None:intergenic | 25.0% |
| !! | ATTTCATTTGGTTTATAGGT+AGG | - | chr1_1:62480676-62480695 | None:intergenic | 25.0% |
| !! | AGACATTTCATTTGGTTTAT+AGG | - | chr1_1:62480680-62480699 | None:intergenic | 25.0% |
| ! | GTTTATTGAGAAAGTAGTAT+TGG | + | chr1_1:62480714-62480733 | Msa0034480:intron | 25.0% |
| ! | ACTAAACAAATAGAATCTAC+AGG | + | chr1_1:62480853-62480872 | Msa0034480:intron | 25.0% |
| !! | AGATAGCAACGAAATTATTT+TGG | + | chr1_1:62480942-62480961 | Msa0034480:intron | 25.0% |
| ! | CTCAAAACTTATCAAAACAA+TGG | + | chr1_1:62481180-62481199 | Msa0034480:intron | 25.0% |
| ! | ATGAATACTCCAACATTTAT+AGG | - | chr1_1:62481220-62481239 | None:intergenic | 25.0% |
| !! | TTTTCTTGATTTCTAACTGT+TGG | - | chr1_1:62481529-62481548 | None:intergenic | 25.0% |
| ! | GAAATAAGTCTCAAGTTTAT+TGG | - | chr1_1:62481707-62481726 | None:intergenic | 25.0% |
| !!! | AGAGAGATTGTTTTGACTAA+AGG | + | chr1_1:62478547-62478566 | Msa0034480:five_prime_UTR | 30.0% |
| !!! | GAGAGATTGTTTTGACTAAA+GGG | + | chr1_1:62478548-62478567 | Msa0034480:five_prime_UTR | 30.0% |
| CATATATGTGCAAATTAAGG+AGG | + | chr1_1:62478591-62478610 | Msa0034480:five_prime_UTR | 30.0% | |
| !! | AAAAATTTGGTGTCTGTATC+TGG | - | chr1_1:62478683-62478702 | None:intergenic | 30.0% |
| CTCAATTCAACAGAAAAACA+GGG | - | chr1_1:62478753-62478772 | None:intergenic | 30.0% | |
| TCTCAATTCAACAGAAAAAC+AGG | - | chr1_1:62478754-62478773 | None:intergenic | 30.0% | |
| TCGAATCAGAAAATAACACA+TGG | + | chr1_1:62478781-62478800 | Msa0034480:exon | 30.0% | |
| ATAACCTCAATCACAAAATC+AGG | - | chr1_1:62479080-62479099 | None:intergenic | 30.0% | |
| GTTATACCAAAAACTTTCGT+AGG | + | chr1_1:62479499-62479518 | Msa0034480:intron | 30.0% | |
| !!! | CTTTTAGTTTGTTTGATGCA+TGG | + | chr1_1:62479525-62479544 | Msa0034480:intron | 30.0% |
| GATGCATGGAAATATTAAAC+TGG | + | chr1_1:62479539-62479558 | Msa0034480:intron | 30.0% | |
| GCTAGAGTTAAAAATGTTTG+TGG | + | chr1_1:62479761-62479780 | Msa0034480:CDS | 30.0% | |
| CTTAAATTCTTTCATGTTCC+CGG | + | chr1_1:62479832-62479851 | Msa0034480:intron | 30.0% | |
| TTTAAGCAGCTAAATGTTTC+CGG | - | chr1_1:62479854-62479873 | None:intergenic | 30.0% | |
| GTAAGGGTTAAATGCTAAAT+AGG | - | chr1_1:62480203-62480222 | None:intergenic | 30.0% | |
| CAAGACAGAATTATAGGTAA+GGG | - | chr1_1:62480219-62480238 | None:intergenic | 30.0% | |
| ACGAATTAAGCTAAAATCAG+TGG | - | chr1_1:62480267-62480286 | None:intergenic | 30.0% | |
| !!! | ACTGATTTTAGCTTAATTCG+TGG | + | chr1_1:62480266-62480285 | Msa0034480:intron | 30.0% |
| GAAAAATAACAGGAATTAGG+AGG | - | chr1_1:62480480-62480499 | None:intergenic | 30.0% | |
| TCAAAAGTAGAGAATTGTGT+AGG | - | chr1_1:62480545-62480564 | None:intergenic | 30.0% | |
| AAGTTTGTGCAAAACTTTAC+GGG | + | chr1_1:62480575-62480594 | Msa0034480:intron | 30.0% | |
| GACTTAGAAGACATTTCATT+TGG | - | chr1_1:62480688-62480707 | None:intergenic | 30.0% | |
| TACTACTTTCTCAATAAACG+TGG | - | chr1_1:62480713-62480732 | None:intergenic | 30.0% | |
| GATTATTGTGGACATTTCAT+TGG | - | chr1_1:62481109-62481128 | None:intergenic | 30.0% | |
| TGTCCACAATAATCCTTAAA+AGG | + | chr1_1:62481115-62481134 | Msa0034480:intron | 30.0% | |
| ! | TCAAGCTATTTCGTTAAAGA+CGG | + | chr1_1:62481367-62481386 | Msa0034480:intron | 30.0% |
| AATAGATGATGTCTATTAGG+AGG | - | chr1_1:62481405-62481424 | None:intergenic | 30.0% | |
| GATTATTCCTTCAGAATTAG+AGG | + | chr1_1:62481603-62481622 | Msa0034480:three_prime_UTR | 30.0% | |
| ATTAGAGGATGTTTGAATGT+TGG | + | chr1_1:62481618-62481637 | Msa0034480:three_prime_UTR | 30.0% | |
| TTAGAGGATGTTTGAATGTT+GGG | + | chr1_1:62481619-62481638 | Msa0034480:three_prime_UTR | 30.0% | |
| ! | CTAAAGGGAAAGAAAGTACA+CGG | + | chr1_1:62478563-62478582 | Msa0034480:five_prime_UTR | 35.0% |
| TTTGTTTGTTTCCGAAAACG+AGG | - | chr1_1:62478621-62478640 | None:intergenic | 35.0% | |
| AACACATGGATCACTTACAT+AGG | + | chr1_1:62478795-62478814 | Msa0034480:exon | 35.0% | |
| ! | TAGTCCTGATTTTGTGATTG+AGG | + | chr1_1:62479073-62479092 | Msa0034480:CDS | 35.0% |
| GTTAGTGTCAATATCGTATC+TGG | - | chr1_1:62479254-62479273 | None:intergenic | 35.0% | |
| TACATAGCACAAAAGTTGGA+GGG | + | chr1_1:62479424-62479443 | Msa0034480:intron | 35.0% | |
| !!! | GAAAGTTTTTGGTATAACCC+AGG | - | chr1_1:62479497-62479516 | None:intergenic | 35.0% |
| ! | AAGTCACCTACGAAAGTTTT+TGG | - | chr1_1:62479508-62479527 | None:intergenic | 35.0% |
| TGTATTAGTGCACTAACCTA+TGG | + | chr1_1:62479688-62479707 | Msa0034480:intron | 35.0% | |
| TTAAGCAGCTAAATGTTTCC+GGG | - | chr1_1:62479853-62479872 | None:intergenic | 35.0% | |
| GGATTACAAAAGATACTACC+GGG | - | chr1_1:62480128-62480147 | None:intergenic | 35.0% | |
| GGGATTACAAAAGATACTAC+CGG | - | chr1_1:62480129-62480148 | None:intergenic | 35.0% | |
| !!! | GCTGAGAATAAGTTTTAGAG+GGG | - | chr1_1:62480149-62480168 | None:intergenic | 35.0% |
| !!! | CGCTGAGAATAAGTTTTAGA+GGG | - | chr1_1:62480150-62480169 | None:intergenic | 35.0% |
| !! | ACGCTGAGAATAAGTTTTAG+AGG | - | chr1_1:62480151-62480170 | None:intergenic | 35.0% |
| AACTTATTCTCAGCGTTCTT+TGG | + | chr1_1:62480155-62480174 | Msa0034480:intron | 35.0% | |
| CCAAGACAGAATTATAGGTA+AGG | - | chr1_1:62480220-62480239 | None:intergenic | 35.0% | |
| CCTTACCTATAATTCTGTCT+TGG | + | chr1_1:62480217-62480236 | Msa0034480:intron | 35.0% | |
| !!! | CCTTTTTTTACACTCAGAAG+GGG | - | chr1_1:62480432-62480451 | None:intergenic | 35.0% |
| !!! | CCCTTTTTTTACACTCAGAA+GGG | - | chr1_1:62480433-62480452 | None:intergenic | 35.0% |
| CCCTTCTGAGTGTAAAAAAA+GGG | + | chr1_1:62480430-62480449 | Msa0034480:intron | 35.0% | |
| ! | GCAAAAAAGTGTACACAGTT+TGG | + | chr1_1:62480452-62480471 | Msa0034480:intron | 35.0% |
| AAATGAGCAAACAGAAAACG+TGG | + | chr1_1:62480894-62480913 | Msa0034480:intron | 35.0% | |
| AATGAGCAAACAGAAAACGT+GGG | + | chr1_1:62480895-62480914 | Msa0034480:intron | 35.0% | |
| CAAGCTTAGACAAATACAAG+TGG | - | chr1_1:62481085-62481104 | None:intergenic | 35.0% | |
| !! | ACGCCTTTTAAGGATTATTG+TGG | - | chr1_1:62481121-62481140 | None:intergenic | 35.0% |
| ! | TCCTTAAAAGGCGTATTCAA+TGG | + | chr1_1:62481127-62481146 | Msa0034480:intron | 35.0% |
| ! | ACCATTGAATACGCCTTTTA+AGG | - | chr1_1:62481131-62481150 | None:intergenic | 35.0% |
| ACATCACTGCCTATAAATGT+TGG | + | chr1_1:62481208-62481227 | Msa0034480:intron | 35.0% | |
| CGGAATAGATGATGTCTATT+AGG | - | chr1_1:62481408-62481427 | None:intergenic | 35.0% | |
| CCTTGTGTGAATAGATCTAA+CGG | - | chr1_1:62481485-62481504 | None:intergenic | 35.0% | |
| CGTTAGATCTATTCACACAA+GGG | + | chr1_1:62481483-62481502 | Msa0034480:CDS | 35.0% | |
| !!! | TTGCTTGTTTTGGTTTTTGC+TGG | + | chr1_1:62481581-62481600 | Msa0034480:three_prime_UTR | 35.0% |
| CAAACATCCTCTAATTCTGA+AGG | - | chr1_1:62481613-62481632 | None:intergenic | 35.0% | |
| ! | AAGGAGGAAATCCTCGTTTT+CGG | + | chr1_1:62478607-62478626 | Msa0034480:five_prime_UTR | 40.0% |
| TATCTGGTCTGGTCTGAATT+CGG | - | chr1_1:62478667-62478686 | None:intergenic | 40.0% | |
| CAACAGAAAAACAGGGTTGA+AGG | - | chr1_1:62478746-62478765 | None:intergenic | 40.0% | |
| GTGCTACATAGCACAAAAGT+TGG | + | chr1_1:62479420-62479439 | Msa0034480:intron | 40.0% | |
| CTACATAGCACAAAAGTTGG+AGG | + | chr1_1:62479423-62479442 | Msa0034480:intron | 40.0% | |
| ACCCTAGGATACGACAATTT+GGG | - | chr1_1:62479468-62479487 | None:intergenic | 40.0% | |
| TACCCTAGGATACGACAATT+TGG | - | chr1_1:62479469-62479488 | None:intergenic | 40.0% | |
| ! | ACTGCTTCCCTTTTGTTGAT+GGG | - | chr1_1:62479628-62479647 | None:intergenic | 40.0% |
| ! | CACGTTCAGAAATTTTTGCG+AGG | + | chr1_1:62479784-62479803 | Msa0034480:CDS | 40.0% |
| TTAAGAAAACTCACCCTTCC+AGG | - | chr1_1:62479817-62479836 | None:intergenic | 40.0% | |
| CATATGTCCCCATGTATGTT+TGG | + | chr1_1:62479980-62479999 | Msa0034480:intron | 40.0% | |
| TTCGACACCAAACATACATG+GGG | - | chr1_1:62479990-62480009 | None:intergenic | 40.0% | |
| CTTCGACACCAAACATACAT+GGG | - | chr1_1:62479991-62480010 | None:intergenic | 40.0% | |
| ACTTCGACACCAAACATACA+TGG | - | chr1_1:62479992-62480011 | None:intergenic | 40.0% | |
| ! | AAAGCTTTAGCAATCTACCG+AGG | + | chr1_1:62480040-62480059 | Msa0034480:intron | 40.0% |
| AACTACATCTTGAATCTGCC+CGG | + | chr1_1:62480107-62480126 | Msa0034480:intron | 40.0% | |
| GGAGTCCAAGACAGAATTAT+AGG | - | chr1_1:62480225-62480244 | None:intergenic | 40.0% | |
| CTCCTTCACAACTTATCTTG+AGG | + | chr1_1:62480241-62480260 | Msa0034480:intron | 40.0% | |
| CCCCTTCTGAGTGTAAAAAA+AGG | + | chr1_1:62480429-62480448 | Msa0034480:intron | 40.0% | |
| !!! | GCCCTTTTTTTACACTCAGA+AGG | - | chr1_1:62480434-62480453 | None:intergenic | 40.0% |
| TATAGGTAGGGAAACGTAGA+AGG | - | chr1_1:62480663-62480682 | None:intergenic | 40.0% | |
| TGTATACTTCGTGCAGTCAT+TGG | - | chr1_1:62480824-62480843 | None:intergenic | 40.0% | |
| GCTCATTTATCACTGTGTTG+TGG | - | chr1_1:62480882-62480901 | None:intergenic | 40.0% | |
| ! | CAATAAGTTGAGAGAGACGA+CGG | + | chr1_1:62480918-62480937 | Msa0034480:intron | 40.0% |
| AGACTTTAATCCTCACCTCT+TGG | + | chr1_1:62480980-62480999 | Msa0034480:intron | 40.0% | |
| AAAAGTTAGTCCAAGAGGTG+AGG | - | chr1_1:62480993-62481012 | None:intergenic | 40.0% | |
| ! | ACCTCTTGGACTAACTTTTG+AGG | + | chr1_1:62480994-62481013 | Msa0034480:intron | 40.0% |
| ACCTCAAAAGTTAGTCCAAG+AGG | - | chr1_1:62480998-62481017 | None:intergenic | 40.0% | |
| AATACAAGTGGCCGAATAAC+AGG | - | chr1_1:62481073-62481092 | None:intergenic | 40.0% | |
| GCGTATTCAATGGTTTGACT+TGG | + | chr1_1:62481137-62481156 | Msa0034480:intron | 40.0% | |
| ATGTCTGCAACAATTGCAAC+AGG | + | chr1_1:62481274-62481293 | Msa0034480:CDS | 40.0% | |
| CCGTTAGATCTATTCACACA+AGG | + | chr1_1:62481482-62481501 | Msa0034480:CDS | 40.0% | |
| !! | GCAGCTGATTTTGCTTGTTT+TGG | + | chr1_1:62481571-62481590 | Msa0034480:three_prime_UTR | 40.0% |
| ATGTTGGGATAGAACAGATG+TGG | + | chr1_1:62481634-62481653 | Msa0034480:three_prime_UTR | 40.0% | |
| GGATAGAACAGATGTGGATA+AGG | + | chr1_1:62481640-62481659 | Msa0034480:three_prime_UTR | 40.0% | |
| !! | TTTGGTGTCTGTATCTGGTC+TGG | - | chr1_1:62478678-62478697 | None:intergenic | 45.0% |
| GTTGAAACATAGCAGCTTCG+TGG | - | chr1_1:62478832-62478851 | None:intergenic | 45.0% | |
| CGAAGCTGCTATGTTTCAAC+AGG | + | chr1_1:62478832-62478851 | Msa0034480:CDS | 45.0% | |
| ! | TTATTGGTTATTGGGGGAGC+AGG | + | chr1_1:62479001-62479020 | Msa0034480:intron | 45.0% |
| ! | TATTGGTTATTGGGGGAGCA+GGG | + | chr1_1:62479002-62479021 | Msa0034480:intron | 45.0% |
| CTAGGATACGACAATTTGGG+CGG | - | chr1_1:62479465-62479484 | None:intergenic | 45.0% | |
| GCCCAAATTGTCGTATCCTA+GGG | + | chr1_1:62479464-62479483 | Msa0034480:intron | 45.0% | |
| TATCCTAGGGTACGATACCT+GGG | + | chr1_1:62479477-62479496 | Msa0034480:intron | 45.0% | |
| TGCTCATGCCCATCAACAAA+AGG | + | chr1_1:62479617-62479636 | Msa0034480:CDS | 45.0% | |
| GCTCATGCCCATCAACAAAA+GGG | + | chr1_1:62479618-62479637 | Msa0034480:CDS | 45.0% | |
| ! | CACTGCTTCCCTTTTGTTGA+TGG | - | chr1_1:62479629-62479648 | None:intergenic | 45.0% |
| AACAAAAGGGAAGCAGTGCT+AGG | + | chr1_1:62479631-62479650 | Msa0034480:CDS | 45.0% | |
| GGCCTCAAGATAAGTTGTGA+AGG | - | chr1_1:62480246-62480265 | None:intergenic | 45.0% | |
| GCAGCTGCAACAAGAAATCA+AGG | + | chr1_1:62481456-62481475 | Msa0034480:intron | 45.0% | |
| !! | TTTAATAAATTTGATATTAT+TGG | + | chr1_1:62478985-62479004 | Msa0034480:intron | 5.0% |
| CGCCCAAATTGTCGTATCCT+AGG | + | chr1_1:62479463-62479482 | Msa0034480:intron | 50.0% | |
| GTATCCTAGGGTACGATACC+TGG | + | chr1_1:62479476-62479495 | Msa0034480:intron | 50.0% | |
| ! | TAACCCAGGTATCGTACCCT+AGG | - | chr1_1:62479483-62479502 | None:intergenic | 50.0% |
| ! | TTTTTGCGAGGCTCAGAACC+TGG | + | chr1_1:62479796-62479815 | Msa0034480:CDS | 50.0% |
| ATTGGGGGAGCAGGGTTATC+TGG | + | chr1_1:62479010-62479029 | Msa0034480:intron | 55.0% | |
| TGTAGCACGTGTGCGACACC+CGG | - | chr1_1:62479408-62479427 | None:intergenic | 60.0% | |
| TGCGAGGCTCAGAACCTGGA+AGG | + | chr1_1:62479800-62479819 | Msa0034480:CDS | 60.0% | |
| GCGAGGCTCAGAACCTGGAA+GGG | + | chr1_1:62479801-62479820 | Msa0034480:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 62478524 | 62481821 | 62478524 | ID=Msa0034480;Name=Msa0034480 |
| chr1_1 | mRNA | 62478524 | 62481821 | 62478524 | ID=Msa0034480-mRNA-1;Parent=Msa0034480;Name=Msa0034480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=276|1|1|1|1|1|6|311|149 |
| chr1_1 | exon | 62478524 | 62478853 | 62478524 | ID=Msa0034480-mRNA-1:exon:19704;Parent=Msa0034480-mRNA-1 |
| chr1_1 | exon | 62479023 | 62479153 | 62479023 | ID=Msa0034480-mRNA-1:exon:19705;Parent=Msa0034480-mRNA-1 |
| chr1_1 | exon | 62479584 | 62479652 | 62479584 | ID=Msa0034480-mRNA-1:exon:19706;Parent=Msa0034480-mRNA-1 |
| chr1_1 | exon | 62479751 | 62479822 | 62479751 | ID=Msa0034480-mRNA-1:exon:19707;Parent=Msa0034480-mRNA-1 |
| chr1_1 | exon | 62481265 | 62481337 | 62481265 | ID=Msa0034480-mRNA-1:exon:19708;Parent=Msa0034480-mRNA-1 |
| chr1_1 | exon | 62481460 | 62481821 | 62481460 | ID=Msa0034480-mRNA-1:exon:19709;Parent=Msa0034480-mRNA-1 |
| chr1_1 | five_prime_UTR | 62478524 | 62478799 | 62478524 | ID=Msa0034480-mRNA-1:five_prime_utr;Parent=Msa0034480-mRNA-1 |
| chr1_1 | CDS | 62478800 | 62478853 | 62478800 | ID=Msa0034480-mRNA-1:cds;Parent=Msa0034480-mRNA-1 |
| chr1_1 | CDS | 62479023 | 62479153 | 62479023 | ID=Msa0034480-mRNA-1:cds;Parent=Msa0034480-mRNA-1 |
| chr1_1 | CDS | 62479584 | 62479652 | 62479584 | ID=Msa0034480-mRNA-1:cds;Parent=Msa0034480-mRNA-1 |
| chr1_1 | CDS | 62479751 | 62479822 | 62479751 | ID=Msa0034480-mRNA-1:cds;Parent=Msa0034480-mRNA-1 |
| chr1_1 | CDS | 62481265 | 62481337 | 62481265 | ID=Msa0034480-mRNA-1:cds;Parent=Msa0034480-mRNA-1 |
| chr1_1 | CDS | 62481460 | 62481510 | 62481460 | ID=Msa0034480-mRNA-1:cds;Parent=Msa0034480-mRNA-1 |
| chr1_1 | three_prime_UTR | 62481511 | 62481821 | 62481511 | ID=Msa0034480-mRNA-1:three_prime_utr;Parent=Msa0034480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
