AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0083080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083080 MtrunA17_Chr6g0470951 86.452 155 21 0 16 170 5 159 9.52e-99 281
Msa0083080 MtrunA17_Chr1g0196481 83.125 160 4 1 11 170 17 153 1.77e-92 265
Msa0083080 MtrunA17_Chr6g0460561 84.138 145 23 0 26 170 1 145 5.32e-85 246
Msa0083080 MtrunA17_Chr6g0472721 82.759 145 25 0 26 170 1 145 1.10e-84 245
Msa0083080 MtrunA17_Chr6g0472711 82.759 145 25 0 26 170 1 145 1.10e-84 245
Msa0083080 MtrunA17_Chr6g0472741 82.759 145 25 0 26 170 1 145 1.10e-84 245
Msa0083080 MtrunA17_Chr6g0472631 82.759 145 25 0 26 170 1 145 1.10e-84 245
Msa0083080 MtrunA17_Chr6g0472671 82.759 145 25 0 26 170 1 145 1.10e-84 245
Msa0083080 MtrunA17_Chr6g0472701 82.759 145 25 0 26 170 1 145 1.10e-84 245
Msa0083080 MtrunA17_Chr6g0470941 83.448 145 24 0 26 170 1 145 1.47e-84 245
Msa0083080 MtrunA17_Chr6g0472691 82.069 145 26 0 26 170 1 145 3.95e-84 244
Msa0083080 MtrunA17_Chr6g0472681 81.379 145 27 0 26 170 1 145 6.13e-83 241
Msa0083080 MtrunA17_Chr6g0472731 81.379 145 27 0 26 170 1 145 7.55e-83 241
Msa0083080 MtrunA17_Chr6g0460591 82.645 121 21 0 35 155 8 128 2.62e-71 211
Msa0083080 MtrunA17_Chr6g0472651 84.259 108 17 0 26 133 1 108 1.33e-62 188
Msa0083080 MtrunA17_Chr6g0472661 84.259 108 17 0 26 133 1 108 1.33e-62 188
Msa0083080 MtrunA17_Chr6g0460571 85.437 103 15 0 61 163 4 106 2.84e-61 185
Msa0083080 MtrunA17_Chr6g0472621 81.731 104 19 0 26 129 1 104 3.10e-56 172
Msa0083080 MtrunA17_Chr6g0460581 78.723 94 20 0 62 155 3 96 2.79e-51 159
Msa0083080 MtrunA17_Chr6g0472641 80.263 76 15 0 26 101 1 76 5.70e-37 122
Msa0083080 MtrunA17_Chr6g0488751 44.366 142 71 3 14 147 95 236 9.16e-36 126
Msa0083080 MtrunA17_Chr3g0092081 41.135 141 75 3 15 147 106 246 3.65e-33 119
Msa0083080 MtrunA17_Chr3g0091691 41.135 141 75 3 15 147 62 202 9.45e-33 116
Msa0083080 MtrunA17_Chr3g0091711 41.135 141 75 3 15 147 62 202 9.86e-33 116
Msa0083080 MtrunA17_Chr3g0092101 38.000 150 85 3 6 147 94 243 1.94e-30 112
Msa0083080 MtrunA17_Chr3g0091651 35.955 89 53 2 64 148 3 91 2.30e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083080 AT3G63030.1 64.444 135 48 0 15 149 25 159 3.00e-66 201
Msa0083080 AT4G22745.1 56.835 139 60 0 14 152 51 189 2.68e-59 183
Msa0083080 AT5G35330.3 40.426 141 76 3 14 146 55 195 2.05e-32 117
Msa0083080 AT5G35330.1 40.426 141 76 3 14 146 55 195 2.05e-32 117
Msa0083080 AT5G35330.4 40.426 141 76 3 14 146 55 195 2.05e-32 117
Msa0083080 AT5G35330.2 40.426 141 76 3 14 146 55 195 2.05e-32 117
Msa0083080 AT4G00416.1 36.641 131 73 4 15 140 9 134 4.66e-25 95.1
Msa0083080 AT5G35338.2 32.836 134 77 5 20 146 2 129 1.54e-18 78.2

Find 46 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAACCTTGTGGAGTCTT+TGG 0.225609 1_2:-62079528 None:intergenic
TTCTGTTGCTCAATAAATTC+TGG 0.227479 1_2:-62079732 None:intergenic
TGGTGTCTTGCATAATCTTT+GGG 0.244821 1_2:-62079707 None:intergenic
ATGGTGTCTTGCATAATCTT+TGG 0.279956 1_2:-62079708 None:intergenic
TGTGGAGTCTTTGGAATGTT+AGG 0.313454 1_2:-62079519 None:intergenic
AATGCAAACTTTGCATGAAA+TGG 0.372986 1_2:+62079349 Msa0083080:CDS
GCTAGAAGAAGATGGAGTTT+TGG 0.380480 1_2:-62078362 None:intergenic
TAGAAAGGATTACTCTAAGT+TGG 0.402694 1_2:+62079566 Msa0083080:CDS
ATATGCTGCTATCTCATTGC+GGG 0.412618 1_2:-62079628 None:intergenic
TTGTTTATTTCTTTCTCTCT+TGG 0.417634 1_2:-62078249 None:intergenic
TCTGTTGCTCAATAAATTCT+GGG 0.422405 1_2:-62079731 None:intergenic
ACAAGGTTTCAAGAGAATCT+TGG 0.424100 1_2:+62079539 Msa0083080:CDS
TTATTTCTTTCTCTCTTGGT+AGG 0.426600 1_2:-62078245 None:intergenic
TGCTACAATCAAAAGGCTCT+CGG 0.434619 1_2:-62079422 None:intergenic
CTGAGACAGTGTTTAGAGTT+CGG 0.435132 1_2:-62078296 None:intergenic
ATATTGAATATGATTCTTCT+CGG 0.438557 1_2:+62079478 Msa0083080:CDS
GAGAATCTTGGTGCTTAGAA+AGG 0.448776 1_2:+62079551 Msa0083080:CDS
TTGTTTGCTGAATCAATGTC+GGG 0.454590 1_2:+62078337 Msa0083080:exon
CTTTCTCTCTTGGTAGGTGG+TGG 0.465992 1_2:-62078239 None:intergenic
AATATGATTCTTCTCGGACA+TGG 0.476290 1_2:+62079484 Msa0083080:CDS
TGATACACAAGAGGAGTTTG+AGG 0.485320 1_2:+62079380 Msa0083080:CDS
TCTTACTACATCACACCTAC+AGG 0.516283 1_2:+62079591 Msa0083080:CDS
ATATGATTCTTCTCGGACAT+GGG 0.527218 1_2:+62079485 Msa0083080:CDS
TTTCTTTCTCTCTTGGTAGG+TGG 0.528808 1_2:-62078242 None:intergenic
AAATAAACAACTGTTCCGTT+CGG 0.538892 1_2:+62078262 Msa0083080:five_prime_UTR
TTTGTTTGCTGAATCAATGT+CGG 0.540179 1_2:+62078336 Msa0083080:exon
AGAATTTATTGAGCAACAGA+AGG 0.543104 1_2:+62079734 Msa0083080:CDS
GAATCATATTCAATATCAGC+AGG 0.552211 1_2:-62079471 None:intergenic
GCAGATACACCACTGGGTTG+AGG 0.552234 1_2:-62079663 None:intergenic
AACTCCATCTTCTTCTAGCA+AGG 0.558032 1_2:+62078366 Msa0083080:CDS
AAGATTCTCTTGAAACCTTG+TGG 0.558153 1_2:-62079537 None:intergenic
AGTACCTTGCTAGAAGAAGA+TGG 0.558912 1_2:-62078370 None:intergenic
GGTGGTGGCGTTTATAAGAG+AGG 0.577882 1_2:-62078224 None:intergenic
ATCCGCAGCAGATACACCAC+TGG 0.582537 1_2:-62079670 None:intergenic
ACTCTAAACACTGTCTCAGT+CGG 0.601352 1_2:+62078300 Msa0083080:five_prime_UTR
TAAACAACTGTTCCGTTCGG+TGG 0.609115 1_2:+62078265 Msa0083080:five_prime_UTR
ACCCAGTGGTGTATCTGCTG+CGG 0.611469 1_2:+62079668 Msa0083080:CDS
GATATGCTGCTATCTCATTG+CGG 0.625471 1_2:-62079629 None:intergenic
TTGCTCAATAAATTCTGGGA+TGG 0.634957 1_2:-62079727 None:intergenic
AACATTCCAAAGACTCCACA+AGG 0.636979 1_2:+62079522 Msa0083080:CDS
GAGAGTGATTGATACACAAG+AGG 0.640381 1_2:+62079371 Msa0083080:CDS
GGTGTCTTGCATAATCTTTG+GGG 0.668330 1_2:-62079706 None:intergenic
GCTCTCGGATGATCTTATGA+CGG 0.668353 1_2:-62079407 None:intergenic
TCCGCAGCAGATACACCACT+GGG 0.695152 1_2:-62079669 None:intergenic
TCGGAGAAGATACCACCGAA+CGG 0.717114 1_2:-62078277 None:intergenic
AAAGATCATCCTCAACCCAG+TGG 0.719856 1_2:+62079654 Msa0083080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAATAGTTGAAAACTAA+GGG - chr1_2:62078450-62078469 None:intergenic 20.0%
!! AGAAAAATAGTTGAAAACTA+AGG - chr1_2:62078451-62078470 None:intergenic 20.0%
!!! TTACTTGTTAATTGAATTGA+AGG + chr1_2:62078530-62078549 Msa0083080:intron 20.0%
!!! TACTTGTTAATTGAATTGAA+GGG + chr1_2:62078531-62078550 Msa0083080:intron 20.0%
!!! TGTTAATTTTCTGTTTTGAA+TGG + chr1_2:62078675-62078694 Msa0083080:intron 20.0%
!!! GTTAATTTTCTGTTTTGAAT+GGG + chr1_2:62078676-62078695 Msa0083080:intron 20.0%
!!! TTAATTTTCTGTTTTGAATG+GGG + chr1_2:62078677-62078696 Msa0083080:intron 20.0%
!! TAAATTGTGCACTTATAATT+TGG + chr1_2:62079077-62079096 Msa0083080:intron 20.0%
!! CTCAATATAAAAACCTAATA+TGG - chr1_2:62079141-62079160 None:intergenic 20.0%
!!! ATGGATTATTAAGTCTTTAT+TGG + chr1_2:62079269-62079288 Msa0083080:intron 20.0%
!! TGGATTATTAAGTCTTTATT+GGG + chr1_2:62079270-62079289 Msa0083080:intron 20.0%
!! ATATTGAATATGATTCTTCT+CGG + chr1_2:62079478-62079497 Msa0083080:CDS 20.0%
!! GAAAAATAGTTGAAAACTAA+GGG - chr1_2:62078450-62078469 None:intergenic 20.0%
!! AGAAAAATAGTTGAAAACTA+AGG - chr1_2:62078451-62078470 None:intergenic 20.0%
!!! TTACTTGTTAATTGAATTGA+AGG + chr1_2:62078530-62078549 Msa0083080:intron 20.0%
!!! TACTTGTTAATTGAATTGAA+GGG + chr1_2:62078531-62078550 Msa0083080:intron 20.0%
!!! TGTTAATTTTCTGTTTTGAA+TGG + chr1_2:62078675-62078694 Msa0083080:intron 20.0%
!!! GTTAATTTTCTGTTTTGAAT+GGG + chr1_2:62078676-62078695 Msa0083080:intron 20.0%
!!! TTAATTTTCTGTTTTGAATG+GGG + chr1_2:62078677-62078696 Msa0083080:intron 20.0%
!! TAAATTGTGCACTTATAATT+TGG + chr1_2:62079077-62079096 Msa0083080:intron 20.0%
!! CTCAATATAAAAACCTAATA+TGG - chr1_2:62079141-62079160 None:intergenic 20.0%
!!! ATGGATTATTAAGTCTTTAT+TGG + chr1_2:62079269-62079288 Msa0083080:intron 20.0%
!! TGGATTATTAAGTCTTTATT+GGG + chr1_2:62079270-62079289 Msa0083080:intron 20.0%
!! ATATTGAATATGATTCTTCT+CGG + chr1_2:62079478-62079497 Msa0083080:CDS 20.0%
!! TTGTTTATTTCTTTCTCTCT+TGG - chr1_2:62078252-62078271 None:intergenic 25.0%
!!! ACTCGATTCCTTTTTTTTTA+GGG + chr1_2:62078415-62078434 Msa0083080:intron 25.0%
! TGACAAAACCCTAAAAAAAA+AGG - chr1_2:62078426-62078445 None:intergenic 25.0%
!! TCTATTCTTGTTAACTCTTT+TGG + chr1_2:62078474-62078493 Msa0083080:intron 25.0%
!! CTATTCTTGTTAACTCTTTT+GGG + chr1_2:62078475-62078494 Msa0083080:intron 25.0%
!!! TGATGTTCTTTTTTCGTTTT+AGG + chr1_2:62078499-62078518 Msa0083080:intron 25.0%
!!! GATGTTCTTTTTTCGTTTTA+GGG + chr1_2:62078500-62078519 Msa0083080:intron 25.0%
! AAATCGTAGGAGTAAAAAAA+AGG + chr1_2:62078968-62078987 Msa0083080:intron 25.0%
! AATCGTAGGAGTAAAAAAAA+GGG + chr1_2:62078969-62078988 Msa0083080:intron 25.0%
! GAGTAAAAAAAAGGGTTTAA+GGG + chr1_2:62078977-62078996 Msa0083080:intron 25.0%
! TATAAGTGCACAATTTAACA+TGG - chr1_2:62079074-62079093 None:intergenic 25.0%
!!! TTGGTTTTTTGTCAATAGTA+TGG + chr1_2:62079250-62079269 Msa0083080:intron 25.0%
!! TTGTTTATTTCTTTCTCTCT+TGG - chr1_2:62078252-62078271 None:intergenic 25.0%
!!! ACTCGATTCCTTTTTTTTTA+GGG + chr1_2:62078415-62078434 Msa0083080:intron 25.0%
! TGACAAAACCCTAAAAAAAA+AGG - chr1_2:62078426-62078445 None:intergenic 25.0%
!! TCTATTCTTGTTAACTCTTT+TGG + chr1_2:62078474-62078493 Msa0083080:intron 25.0%
!! CTATTCTTGTTAACTCTTTT+GGG + chr1_2:62078475-62078494 Msa0083080:intron 25.0%
!!! TGATGTTCTTTTTTCGTTTT+AGG + chr1_2:62078499-62078518 Msa0083080:intron 25.0%
!!! GATGTTCTTTTTTCGTTTTA+GGG + chr1_2:62078500-62078519 Msa0083080:intron 25.0%
! AAATCGTAGGAGTAAAAAAA+AGG + chr1_2:62078968-62078987 Msa0083080:intron 25.0%
! AATCGTAGGAGTAAAAAAAA+GGG + chr1_2:62078969-62078988 Msa0083080:intron 25.0%
! GAGTAAAAAAAAGGGTTTAA+GGG + chr1_2:62078977-62078996 Msa0083080:intron 25.0%
! TATAAGTGCACAATTTAACA+TGG - chr1_2:62079074-62079093 None:intergenic 25.0%
!!! TTGGTTTTTTGTCAATAGTA+TGG + chr1_2:62079250-62079269 Msa0083080:intron 25.0%
! TTATTTCTTTCTCTCTTGGT+AGG - chr1_2:62078248-62078267 None:intergenic 30.0%
AAATAAACAACTGTTCCGTT+CGG + chr1_2:62078262-62078281 Msa0083080:five_prime_UTR 30.0%
! TTTGTTTGCTGAATCAATGT+CGG + chr1_2:62078336-62078355 Msa0083080:exon 30.0%
!!! CACTCGATTCCTTTTTTTTT+AGG + chr1_2:62078414-62078433 Msa0083080:intron 30.0%
AAAAAAATCTTACGCACCTA+GGG - chr1_2:62078600-62078619 None:intergenic 30.0%
AAAAAAAATCTTACGCACCT+AGG - chr1_2:62078601-62078620 None:intergenic 30.0%
ATTGTTAAACCAAGATAGAG+TGG + chr1_2:62078708-62078727 Msa0083080:intron 30.0%
! TGTTATGTTGCTGTTAAGTA+TGG + chr1_2:62078769-62078788 Msa0083080:intron 30.0%
! GTTATGTTGCTGTTAAGTAT+GGG + chr1_2:62078770-62078789 Msa0083080:intron 30.0%
AATATCAGATCTGCAACAAA+AGG + chr1_2:62078798-62078817 Msa0083080:intron 30.0%
! TTGCTAAATTGTTTCTCTTC+CGG + chr1_2:62078904-62078923 Msa0083080:intron 30.0%
TGAAATCCAGACAAATCAAA+GGG - chr1_2:62078948-62078967 None:intergenic 30.0%
TTGAAATCCAGACAAATCAA+AGG - chr1_2:62078949-62078968 None:intergenic 30.0%
GGAGTAAAAAAAAGGGTTTA+AGG + chr1_2:62078976-62078995 Msa0083080:intron 30.0%
ATTGTGCACTTATAATTTGG+TGG + chr1_2:62079080-62079099 Msa0083080:intron 30.0%
ATAGACTGTGATACCATATT+AGG + chr1_2:62079125-62079144 Msa0083080:intron 30.0%
!!! GCTTATCACTTTTTTAACAC+AGG + chr1_2:62079225-62079244 Msa0083080:intron 30.0%
AATGCAAACTTTGCATGAAA+TGG + chr1_2:62079349-62079368 Msa0083080:CDS 30.0%
GAATCATATTCAATATCAGC+AGG - chr1_2:62079474-62079493 None:intergenic 30.0%
TAGAAAGGATTACTCTAAGT+TGG + chr1_2:62079566-62079585 Msa0083080:CDS 30.0%
TCTGTTGCTCAATAAATTCT+GGG - chr1_2:62079734-62079753 None:intergenic 30.0%
TTCTGTTGCTCAATAAATTC+TGG - chr1_2:62079735-62079754 None:intergenic 30.0%
AGAATTTATTGAGCAACAGA+AGG + chr1_2:62079734-62079753 Msa0083080:CDS 30.0%
! TTATTTCTTTCTCTCTTGGT+AGG - chr1_2:62078248-62078267 None:intergenic 30.0%
AAATAAACAACTGTTCCGTT+CGG + chr1_2:62078262-62078281 Msa0083080:five_prime_UTR 30.0%
! TTTGTTTGCTGAATCAATGT+CGG + chr1_2:62078336-62078355 Msa0083080:exon 30.0%
!!! CACTCGATTCCTTTTTTTTT+AGG + chr1_2:62078414-62078433 Msa0083080:intron 30.0%
AAAAAAATCTTACGCACCTA+GGG - chr1_2:62078600-62078619 None:intergenic 30.0%
AAAAAAAATCTTACGCACCT+AGG - chr1_2:62078601-62078620 None:intergenic 30.0%
ATTGTTAAACCAAGATAGAG+TGG + chr1_2:62078708-62078727 Msa0083080:intron 30.0%
! TGTTATGTTGCTGTTAAGTA+TGG + chr1_2:62078769-62078788 Msa0083080:intron 30.0%
! GTTATGTTGCTGTTAAGTAT+GGG + chr1_2:62078770-62078789 Msa0083080:intron 30.0%
AATATCAGATCTGCAACAAA+AGG + chr1_2:62078798-62078817 Msa0083080:intron 30.0%
! TTGCTAAATTGTTTCTCTTC+CGG + chr1_2:62078904-62078923 Msa0083080:intron 30.0%
TGAAATCCAGACAAATCAAA+GGG - chr1_2:62078948-62078967 None:intergenic 30.0%
TTGAAATCCAGACAAATCAA+AGG - chr1_2:62078949-62078968 None:intergenic 30.0%
GGAGTAAAAAAAAGGGTTTA+AGG + chr1_2:62078976-62078995 Msa0083080:intron 30.0%
ATTGTGCACTTATAATTTGG+TGG + chr1_2:62079080-62079099 Msa0083080:intron 30.0%
ATAGACTGTGATACCATATT+AGG + chr1_2:62079125-62079144 Msa0083080:intron 30.0%
!!! GCTTATCACTTTTTTAACAC+AGG + chr1_2:62079225-62079244 Msa0083080:intron 30.0%
AATGCAAACTTTGCATGAAA+TGG + chr1_2:62079349-62079368 Msa0083080:CDS 30.0%
GAATCATATTCAATATCAGC+AGG - chr1_2:62079474-62079493 None:intergenic 30.0%
TAGAAAGGATTACTCTAAGT+TGG + chr1_2:62079566-62079585 Msa0083080:CDS 30.0%
TCTGTTGCTCAATAAATTCT+GGG - chr1_2:62079734-62079753 None:intergenic 30.0%
TTCTGTTGCTCAATAAATTC+TGG - chr1_2:62079735-62079754 None:intergenic 30.0%
AGAATTTATTGAGCAACAGA+AGG + chr1_2:62079734-62079753 Msa0083080:CDS 30.0%
! TTGTTTGCTGAATCAATGTC+GGG + chr1_2:62078337-62078356 Msa0083080:exon 35.0%
!!! GTGCAGATTTGTTTTTATCC+TGG + chr1_2:62078626-62078645 Msa0083080:intron 35.0%
! TCTAGTTTCTCATAAGATCC+AGG - chr1_2:62078647-62078666 None:intergenic 35.0%
CAGAAAATTCCACTCTATCT+TGG - chr1_2:62078720-62078739 None:intergenic 35.0%
TGTCTGGATTTCAAAATCGT+AGG + chr1_2:62078955-62078974 Msa0083080:intron 35.0%
!!! TTAAGGGTTTTTTGCATGTC+TGG + chr1_2:62078993-62079012 Msa0083080:intron 35.0%
! TTTTGCATGTCTGGATTATC+CGG + chr1_2:62079002-62079021 Msa0083080:intron 35.0%
!!! CACTTTTTTAACACAGGACT+TGG + chr1_2:62079231-62079250 Msa0083080:intron 35.0%
ATATATATCAACTGAGCCCT+GGG - chr1_2:62079322-62079341 None:intergenic 35.0%
!! GCCTTTTGATTGTAGCAAAA+AGG + chr1_2:62079428-62079447 Msa0083080:CDS 35.0%
! GCCTTTTTGCTACAATCAAA+AGG - chr1_2:62079432-62079451 None:intergenic 35.0%
AATATGATTCTTCTCGGACA+TGG + chr1_2:62079484-62079503 Msa0083080:CDS 35.0%
ATATGATTCTTCTCGGACAT+GGG + chr1_2:62079485-62079504 Msa0083080:CDS 35.0%
AAGATTCTCTTGAAACCTTG+TGG - chr1_2:62079540-62079559 None:intergenic 35.0%
ACAAGGTTTCAAGAGAATCT+TGG + chr1_2:62079539-62079558 Msa0083080:CDS 35.0%
!!! GTTCTCAGTTTTTTACCTGT+AGG - chr1_2:62079609-62079628 None:intergenic 35.0%
TGGTGTCTTGCATAATCTTT+GGG - chr1_2:62079710-62079729 None:intergenic 35.0%
ATGGTGTCTTGCATAATCTT+TGG - chr1_2:62079711-62079730 None:intergenic 35.0%
! TTGCTCAATAAATTCTGGGA+TGG - chr1_2:62079730-62079749 None:intergenic 35.0%
! TTGTTTGCTGAATCAATGTC+GGG + chr1_2:62078337-62078356 Msa0083080:exon 35.0%
!!! GTGCAGATTTGTTTTTATCC+TGG + chr1_2:62078626-62078645 Msa0083080:intron 35.0%
! TCTAGTTTCTCATAAGATCC+AGG - chr1_2:62078647-62078666 None:intergenic 35.0%
CAGAAAATTCCACTCTATCT+TGG - chr1_2:62078720-62078739 None:intergenic 35.0%
TGTCTGGATTTCAAAATCGT+AGG + chr1_2:62078955-62078974 Msa0083080:intron 35.0%
!!! TTAAGGGTTTTTTGCATGTC+TGG + chr1_2:62078993-62079012 Msa0083080:intron 35.0%
! TTTTGCATGTCTGGATTATC+CGG + chr1_2:62079002-62079021 Msa0083080:intron 35.0%
!!! CACTTTTTTAACACAGGACT+TGG + chr1_2:62079231-62079250 Msa0083080:intron 35.0%
ATATATATCAACTGAGCCCT+GGG - chr1_2:62079322-62079341 None:intergenic 35.0%
!! GCCTTTTGATTGTAGCAAAA+AGG + chr1_2:62079428-62079447 Msa0083080:CDS 35.0%
! GCCTTTTTGCTACAATCAAA+AGG - chr1_2:62079432-62079451 None:intergenic 35.0%
AATATGATTCTTCTCGGACA+TGG + chr1_2:62079484-62079503 Msa0083080:CDS 35.0%
ATATGATTCTTCTCGGACAT+GGG + chr1_2:62079485-62079504 Msa0083080:CDS 35.0%
AAGATTCTCTTGAAACCTTG+TGG - chr1_2:62079540-62079559 None:intergenic 35.0%
ACAAGGTTTCAAGAGAATCT+TGG + chr1_2:62079539-62079558 Msa0083080:CDS 35.0%
!!! GTTCTCAGTTTTTTACCTGT+AGG - chr1_2:62079609-62079628 None:intergenic 35.0%
TGGTGTCTTGCATAATCTTT+GGG - chr1_2:62079710-62079729 None:intergenic 35.0%
ATGGTGTCTTGCATAATCTT+TGG - chr1_2:62079711-62079730 None:intergenic 35.0%
! TTGCTCAATAAATTCTGGGA+TGG - chr1_2:62079730-62079749 None:intergenic 35.0%
TTTCTTTCTCTCTTGGTAGG+TGG - chr1_2:62078245-62078264 None:intergenic 40.0%
! CTGAGACAGTGTTTAGAGTT+CGG - chr1_2:62078299-62078318 None:intergenic 40.0%
ACTCTAAACACTGTCTCAGT+CGG + chr1_2:62078300-62078319 Msa0083080:five_prime_UTR 40.0%
! GCTAGAAGAAGATGGAGTTT+TGG - chr1_2:62078365-62078384 None:intergenic 40.0%
AACTCCATCTTCTTCTAGCA+AGG + chr1_2:62078366-62078385 Msa0083080:CDS 40.0%
AGTACCTTGCTAGAAGAAGA+TGG - chr1_2:62078373-62078392 None:intergenic 40.0%
TCAATTTGATTCCGAACCCT+AGG + chr1_2:62078581-62078600 Msa0083080:intron 40.0%
! ATGTTGCTGTTAAGTATGGG+TGG + chr1_2:62078773-62078792 Msa0083080:intron 40.0%
AGACAAATCAAAGGGCTTTG+CGG - chr1_2:62078940-62078959 None:intergenic 40.0%
GATTATCCGGACAAATCAGA+GGG + chr1_2:62079015-62079034 Msa0083080:intron 40.0%
AGTCTAACTCATCCCAAAAC+CGG + chr1_2:62079159-62079178 Msa0083080:intron 40.0%
!! ACACCATATAAGCCGGTTTT+GGG - chr1_2:62079174-62079193 None:intergenic 40.0%
!! TACACCATATAAGCCGGTTT+TGG - chr1_2:62079175-62079194 None:intergenic 40.0%
ACACTCTACACCATATAAGC+CGG - chr1_2:62079181-62079200 None:intergenic 40.0%
CATATATATCAACTGAGCCC+TGG - chr1_2:62079323-62079342 None:intergenic 40.0%
GAGAGTGATTGATACACAAG+AGG + chr1_2:62079371-62079390 Msa0083080:CDS 40.0%
TGATACACAAGAGGAGTTTG+AGG + chr1_2:62079380-62079399 Msa0083080:CDS 40.0%
TGCTACAATCAAAAGGCTCT+CGG - chr1_2:62079425-62079444 None:intergenic 40.0%
!! TGTGGAGTCTTTGGAATGTT+AGG - chr1_2:62079522-62079541 None:intergenic 40.0%
AACATTCCAAAGACTCCACA+AGG + chr1_2:62079522-62079541 Msa0083080:CDS 40.0%
TTGAAACCTTGTGGAGTCTT+TGG - chr1_2:62079531-62079550 None:intergenic 40.0%
!! GAGAATCTTGGTGCTTAGAA+AGG + chr1_2:62079551-62079570 Msa0083080:CDS 40.0%
TCTTACTACATCACACCTAC+AGG + chr1_2:62079591-62079610 Msa0083080:CDS 40.0%
ATATGCTGCTATCTCATTGC+GGG - chr1_2:62079631-62079650 None:intergenic 40.0%
GATATGCTGCTATCTCATTG+CGG - chr1_2:62079632-62079651 None:intergenic 40.0%
GGTGTCTTGCATAATCTTTG+GGG - chr1_2:62079709-62079728 None:intergenic 40.0%
TTTCTTTCTCTCTTGGTAGG+TGG - chr1_2:62078245-62078264 None:intergenic 40.0%
! CTGAGACAGTGTTTAGAGTT+CGG - chr1_2:62078299-62078318 None:intergenic 40.0%
ACTCTAAACACTGTCTCAGT+CGG + chr1_2:62078300-62078319 Msa0083080:five_prime_UTR 40.0%
! GCTAGAAGAAGATGGAGTTT+TGG - chr1_2:62078365-62078384 None:intergenic 40.0%
AACTCCATCTTCTTCTAGCA+AGG + chr1_2:62078366-62078385 Msa0083080:CDS 40.0%
AGTACCTTGCTAGAAGAAGA+TGG - chr1_2:62078373-62078392 None:intergenic 40.0%
TCAATTTGATTCCGAACCCT+AGG + chr1_2:62078581-62078600 Msa0083080:intron 40.0%
! ATGTTGCTGTTAAGTATGGG+TGG + chr1_2:62078773-62078792 Msa0083080:intron 40.0%
AGACAAATCAAAGGGCTTTG+CGG - chr1_2:62078940-62078959 None:intergenic 40.0%
GATTATCCGGACAAATCAGA+GGG + chr1_2:62079015-62079034 Msa0083080:intron 40.0%
AGTCTAACTCATCCCAAAAC+CGG + chr1_2:62079159-62079178 Msa0083080:intron 40.0%
!! ACACCATATAAGCCGGTTTT+GGG - chr1_2:62079174-62079193 None:intergenic 40.0%
!! TACACCATATAAGCCGGTTT+TGG - chr1_2:62079175-62079194 None:intergenic 40.0%
ACACTCTACACCATATAAGC+CGG - chr1_2:62079181-62079200 None:intergenic 40.0%
CATATATATCAACTGAGCCC+TGG - chr1_2:62079323-62079342 None:intergenic 40.0%
GAGAGTGATTGATACACAAG+AGG + chr1_2:62079371-62079390 Msa0083080:CDS 40.0%
TGATACACAAGAGGAGTTTG+AGG + chr1_2:62079380-62079399 Msa0083080:CDS 40.0%
TGCTACAATCAAAAGGCTCT+CGG - chr1_2:62079425-62079444 None:intergenic 40.0%
!! TGTGGAGTCTTTGGAATGTT+AGG - chr1_2:62079522-62079541 None:intergenic 40.0%
AACATTCCAAAGACTCCACA+AGG + chr1_2:62079522-62079541 Msa0083080:CDS 40.0%
TTGAAACCTTGTGGAGTCTT+TGG - chr1_2:62079531-62079550 None:intergenic 40.0%
!! GAGAATCTTGGTGCTTAGAA+AGG + chr1_2:62079551-62079570 Msa0083080:CDS 40.0%
TCTTACTACATCACACCTAC+AGG + chr1_2:62079591-62079610 Msa0083080:CDS 40.0%
ATATGCTGCTATCTCATTGC+GGG - chr1_2:62079631-62079650 None:intergenic 40.0%
GATATGCTGCTATCTCATTG+CGG - chr1_2:62079632-62079651 None:intergenic 40.0%
GGTGTCTTGCATAATCTTTG+GGG - chr1_2:62079709-62079728 None:intergenic 40.0%
TAAACAACTGTTCCGTTCGG+TGG + chr1_2:62078265-62078284 Msa0083080:five_prime_UTR 45.0%
AATCTTACGCACCTAGGGTT+CGG - chr1_2:62078595-62078614 None:intergenic 45.0%
!! GCAAAGCCCTTTGATTTGTC+TGG + chr1_2:62078939-62078958 Msa0083080:intron 45.0%
GGATTATCCGGACAAATCAG+AGG + chr1_2:62079014-62079033 Msa0083080:intron 45.0%
! TCAAAGCCCTCTGATTTGTC+CGG - chr1_2:62079024-62079043 None:intergenic 45.0%
! AATTTGGTGGATGACCTGAC+TGG + chr1_2:62079093-62079112 Msa0083080:intron 45.0%
TCTATCCAGTGATTCCAGTC+AGG - chr1_2:62079110-62079129 None:intergenic 45.0%
! CATCCCAAAACCGGCTTATA+TGG + chr1_2:62079168-62079187 Msa0083080:intron 45.0%
GGGTTTATTGTGACAGAGAC+CGG + chr1_2:62079290-62079309 Msa0083080:intron 45.0%
GCTCTCGGATGATCTTATGA+CGG - chr1_2:62079410-62079429 None:intergenic 45.0%
AAAGATCATCCTCAACCCAG+TGG + chr1_2:62079654-62079673 Msa0083080:CDS 45.0%
TAAACAACTGTTCCGTTCGG+TGG + chr1_2:62078265-62078284 Msa0083080:five_prime_UTR 45.0%
AATCTTACGCACCTAGGGTT+CGG - chr1_2:62078595-62078614 None:intergenic 45.0%
!! GCAAAGCCCTTTGATTTGTC+TGG + chr1_2:62078939-62078958 Msa0083080:intron 45.0%
GGATTATCCGGACAAATCAG+AGG + chr1_2:62079014-62079033 Msa0083080:intron 45.0%
! TCAAAGCCCTCTGATTTGTC+CGG - chr1_2:62079024-62079043 None:intergenic 45.0%
! AATTTGGTGGATGACCTGAC+TGG + chr1_2:62079093-62079112 Msa0083080:intron 45.0%
TCTATCCAGTGATTCCAGTC+AGG - chr1_2:62079110-62079129 None:intergenic 45.0%
! CATCCCAAAACCGGCTTATA+TGG + chr1_2:62079168-62079187 Msa0083080:intron 45.0%
GGGTTTATTGTGACAGAGAC+CGG + chr1_2:62079290-62079309 Msa0083080:intron 45.0%
GCTCTCGGATGATCTTATGA+CGG - chr1_2:62079410-62079429 None:intergenic 45.0%
AAAGATCATCCTCAACCCAG+TGG + chr1_2:62079654-62079673 Msa0083080:CDS 45.0%
! GGTGGTGGCGTTTATAAGAG+AGG - chr1_2:62078227-62078246 None:intergenic 50.0%
CTTTCTCTCTTGGTAGGTGG+TGG - chr1_2:62078242-62078261 None:intergenic 50.0%
TCGGAGAAGATACCACCGAA+CGG - chr1_2:62078280-62078299 None:intergenic 50.0%
!! TCAGAGGGCTTTGAAAAGCG+CGG + chr1_2:62079030-62079049 Msa0083080:intron 50.0%
GATGACCTGACTGGAATCAC+TGG + chr1_2:62079102-62079121 Msa0083080:intron 50.0%
! GGTGGTGGCGTTTATAAGAG+AGG - chr1_2:62078227-62078246 None:intergenic 50.0%
CTTTCTCTCTTGGTAGGTGG+TGG - chr1_2:62078242-62078261 None:intergenic 50.0%
TCGGAGAAGATACCACCGAA+CGG - chr1_2:62078280-62078299 None:intergenic 50.0%
!! TCAGAGGGCTTTGAAAAGCG+CGG + chr1_2:62079030-62079049 Msa0083080:intron 50.0%
GATGACCTGACTGGAATCAC+TGG + chr1_2:62079102-62079121 Msa0083080:intron 50.0%
TCAAAGGGCTTTGCGGAGCA+CGG - chr1_2:62078933-62078952 None:intergenic 55.0%
!! CAGAGGGCTTTGAAAAGCGC+GGG + chr1_2:62079031-62079050 Msa0083080:intron 55.0%
!! GCTTTGAAAAGCGCGGGAGT+TGG + chr1_2:62079037-62079056 Msa0083080:intron 55.0%
! AAAAGCGCGGGAGTTGGAAG+AGG + chr1_2:62079043-62079062 Msa0083080:intron 55.0%
GCAGATACACCACTGGGTTG+AGG - chr1_2:62079666-62079685 None:intergenic 55.0%
ACCCAGTGGTGTATCTGCTG+CGG + chr1_2:62079668-62079687 Msa0083080:CDS 55.0%
TCCGCAGCAGATACACCACT+GGG - chr1_2:62079672-62079691 None:intergenic 55.0%
ATCCGCAGCAGATACACCAC+TGG - chr1_2:62079673-62079692 None:intergenic 55.0%
TCAAAGGGCTTTGCGGAGCA+CGG - chr1_2:62078933-62078952 None:intergenic 55.0%
!! CAGAGGGCTTTGAAAAGCGC+GGG + chr1_2:62079031-62079050 Msa0083080:intron 55.0%
!! GCTTTGAAAAGCGCGGGAGT+TGG + chr1_2:62079037-62079056 Msa0083080:intron 55.0%
! AAAAGCGCGGGAGTTGGAAG+AGG + chr1_2:62079043-62079062 Msa0083080:intron 55.0%
GCAGATACACCACTGGGTTG+AGG - chr1_2:62079666-62079685 None:intergenic 55.0%
ACCCAGTGGTGTATCTGCTG+CGG + chr1_2:62079668-62079687 Msa0083080:CDS 55.0%
TCCGCAGCAGATACACCACT+GGG - chr1_2:62079672-62079691 None:intergenic 55.0%
ATCCGCAGCAGATACACCAC+TGG - chr1_2:62079673-62079692 None:intergenic 55.0%
GCTTTGCGGAGCACGGAGAC+CGG - chr1_2:62078926-62078945 None:intergenic 65.0%
ACAGAGACCGGCGATGACCC+AGG + chr1_2:62079302-62079321 Msa0083080:intron 65.0%
CAGAGACCGGCGATGACCCA+GGG + chr1_2:62079303-62079322 Msa0083080:intron 65.0%
ACTGAGCCCTGGGTCATCGC+CGG - chr1_2:62079312-62079331 None:intergenic 65.0%
GCTTTGCGGAGCACGGAGAC+CGG - chr1_2:62078926-62078945 None:intergenic 65.0%
ACAGAGACCGGCGATGACCC+AGG + chr1_2:62079302-62079321 Msa0083080:intron 65.0%
CAGAGACCGGCGATGACCCA+GGG + chr1_2:62079303-62079322 Msa0083080:intron 65.0%
ACTGAGCCCTGGGTCATCGC+CGG - chr1_2:62079312-62079331 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 62078189 62079800 62078189 ID=Msa0083080;Name=Msa0083080
chr1_2 mRNA 62078189 62079800 62078189 ID=Msa0083080-mRNA-1;Parent=Msa0083080;Name=Msa0083080-mRNA-1;_AED=0.17;_eAED=0.17;_QI=163|0|0.5|1|1|1|2|0|170
chr1_2 exon 62078189 62078387 62078189 ID=Msa0083080-mRNA-1:exon:20575;Parent=Msa0083080-mRNA-1
chr1_2 exon 62079324 62079800 62079324 ID=Msa0083080-mRNA-1:exon:20576;Parent=Msa0083080-mRNA-1
chr1_2 five_prime_UTR 62078189 62078351 62078189 ID=Msa0083080-mRNA-1:five_prime_utr;Parent=Msa0083080-mRNA-1
chr1_2 CDS 62078352 62078387 62078352 ID=Msa0083080-mRNA-1:cds;Parent=Msa0083080-mRNA-1
chr1_2 CDS 62079324 62079800 62079324 ID=Msa0083080-mRNA-1:cds;Parent=Msa0083080-mRNA-1
Gene Sequence

>Msa0083080

ATGTCGGGCTCCAAAACTCCATCTTCTTCTAGCAAGGGCTCAGTTGATATATATGCTGCACAATGCAAACTTTGCATGAAATGGAGAGTGATTGATACACAAGAGGAGTTTGAGGAGATCCGTCATAAGATCATCCGAGAGCCTTTTGATTGTAGCAAAAAGGCTAATCGTAGCTGTGATGATCCTGCTGATATTGAATATGATTCTTCTCGGACATGGGTCATTGACAAGCCTAACATTCCAAAGACTCCACAAGGTTTCAAGAGAATCTTGGTGCTTAGAAAGGATTACTCTAAGTTGGACTCTTACTACATCACACCTACAGGTAAAAAACTGAGAACCCGCAATGAGATAGCAGCATATCTTAAAGATCATCCTCAACCCAGTGGTGTATCTGCTGCGGATTTTGATTTTTCATCCCCAAAGATTATGCAAGACACCATCCCAGAATTTATTGAGCAACAGAAGGATTCTGCAAACAAAAAAGCTAAGATATCTAAAGATGAAGTTTGA

Protein sequence

>Msa0083080

MSGSKTPSSSSKGSVDIYAAQCKLCMKWRVIDTQEEFEEIRHKIIREPFDCSKKANRSCDDPADIEYDSSRTWVIDKPNIPKTPQGFKRILVLRKDYSKLDSYYITPTGKKLRTRNEIAAYLKDHPQPSGVSAADFDFSSPKIMQDTIPEFIEQQKDSANKKAKISKDEV*