Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083080 | XP_003591612.1 | 94.318 | 176 | 4 | 1 | 1 | 170 | 1 | 176 | 2.07e-116 | 337 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083080 | sp|Q9LYB9|MBD4_ARATH | 64.444 | 135 | 48 | 0 | 15 | 149 | 25 | 159 | 2.96e-65 | 201 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083080 | G7I2V8 | 94.318 | 176 | 4 | 1 | 1 | 170 | 1 | 176 | 9.91e-117 | 337 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0034410 | Msa0083080 | 0.852185 | 5.448601e-61 | -8.615850e-47 |
Msa0083080 | Msa0083140 | 0.908007 | 2.735631e-81 | -8.615850e-47 |
Msa0083080 | Msa0175430 | 0.855309 | 6.880804e-62 | -8.615850e-47 |
Msa0083080 | Msa0746430 | 0.912380 | 2.082410e-83 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083080 | MtrunA17_Chr6g0470951 | 86.452 | 155 | 21 | 0 | 16 | 170 | 5 | 159 | 9.52e-99 | 281 |
Msa0083080 | MtrunA17_Chr1g0196481 | 83.125 | 160 | 4 | 1 | 11 | 170 | 17 | 153 | 1.77e-92 | 265 |
Msa0083080 | MtrunA17_Chr6g0460561 | 84.138 | 145 | 23 | 0 | 26 | 170 | 1 | 145 | 5.32e-85 | 246 |
Msa0083080 | MtrunA17_Chr6g0472721 | 82.759 | 145 | 25 | 0 | 26 | 170 | 1 | 145 | 1.10e-84 | 245 |
Msa0083080 | MtrunA17_Chr6g0472711 | 82.759 | 145 | 25 | 0 | 26 | 170 | 1 | 145 | 1.10e-84 | 245 |
Msa0083080 | MtrunA17_Chr6g0472741 | 82.759 | 145 | 25 | 0 | 26 | 170 | 1 | 145 | 1.10e-84 | 245 |
Msa0083080 | MtrunA17_Chr6g0472631 | 82.759 | 145 | 25 | 0 | 26 | 170 | 1 | 145 | 1.10e-84 | 245 |
Msa0083080 | MtrunA17_Chr6g0472671 | 82.759 | 145 | 25 | 0 | 26 | 170 | 1 | 145 | 1.10e-84 | 245 |
Msa0083080 | MtrunA17_Chr6g0472701 | 82.759 | 145 | 25 | 0 | 26 | 170 | 1 | 145 | 1.10e-84 | 245 |
Msa0083080 | MtrunA17_Chr6g0470941 | 83.448 | 145 | 24 | 0 | 26 | 170 | 1 | 145 | 1.47e-84 | 245 |
Msa0083080 | MtrunA17_Chr6g0472691 | 82.069 | 145 | 26 | 0 | 26 | 170 | 1 | 145 | 3.95e-84 | 244 |
Msa0083080 | MtrunA17_Chr6g0472681 | 81.379 | 145 | 27 | 0 | 26 | 170 | 1 | 145 | 6.13e-83 | 241 |
Msa0083080 | MtrunA17_Chr6g0472731 | 81.379 | 145 | 27 | 0 | 26 | 170 | 1 | 145 | 7.55e-83 | 241 |
Msa0083080 | MtrunA17_Chr6g0460591 | 82.645 | 121 | 21 | 0 | 35 | 155 | 8 | 128 | 2.62e-71 | 211 |
Msa0083080 | MtrunA17_Chr6g0472651 | 84.259 | 108 | 17 | 0 | 26 | 133 | 1 | 108 | 1.33e-62 | 188 |
Msa0083080 | MtrunA17_Chr6g0472661 | 84.259 | 108 | 17 | 0 | 26 | 133 | 1 | 108 | 1.33e-62 | 188 |
Msa0083080 | MtrunA17_Chr6g0460571 | 85.437 | 103 | 15 | 0 | 61 | 163 | 4 | 106 | 2.84e-61 | 185 |
Msa0083080 | MtrunA17_Chr6g0472621 | 81.731 | 104 | 19 | 0 | 26 | 129 | 1 | 104 | 3.10e-56 | 172 |
Msa0083080 | MtrunA17_Chr6g0460581 | 78.723 | 94 | 20 | 0 | 62 | 155 | 3 | 96 | 2.79e-51 | 159 |
Msa0083080 | MtrunA17_Chr6g0472641 | 80.263 | 76 | 15 | 0 | 26 | 101 | 1 | 76 | 5.70e-37 | 122 |
Msa0083080 | MtrunA17_Chr6g0488751 | 44.366 | 142 | 71 | 3 | 14 | 147 | 95 | 236 | 9.16e-36 | 126 |
Msa0083080 | MtrunA17_Chr3g0092081 | 41.135 | 141 | 75 | 3 | 15 | 147 | 106 | 246 | 3.65e-33 | 119 |
Msa0083080 | MtrunA17_Chr3g0091691 | 41.135 | 141 | 75 | 3 | 15 | 147 | 62 | 202 | 9.45e-33 | 116 |
Msa0083080 | MtrunA17_Chr3g0091711 | 41.135 | 141 | 75 | 3 | 15 | 147 | 62 | 202 | 9.86e-33 | 116 |
Msa0083080 | MtrunA17_Chr3g0092101 | 38.000 | 150 | 85 | 3 | 6 | 147 | 94 | 243 | 1.94e-30 | 112 |
Msa0083080 | MtrunA17_Chr3g0091651 | 35.955 | 89 | 53 | 2 | 64 | 148 | 3 | 91 | 2.30e-12 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083080 | AT3G63030.1 | 64.444 | 135 | 48 | 0 | 15 | 149 | 25 | 159 | 3.00e-66 | 201 |
Msa0083080 | AT4G22745.1 | 56.835 | 139 | 60 | 0 | 14 | 152 | 51 | 189 | 2.68e-59 | 183 |
Msa0083080 | AT5G35330.3 | 40.426 | 141 | 76 | 3 | 14 | 146 | 55 | 195 | 2.05e-32 | 117 |
Msa0083080 | AT5G35330.1 | 40.426 | 141 | 76 | 3 | 14 | 146 | 55 | 195 | 2.05e-32 | 117 |
Msa0083080 | AT5G35330.4 | 40.426 | 141 | 76 | 3 | 14 | 146 | 55 | 195 | 2.05e-32 | 117 |
Msa0083080 | AT5G35330.2 | 40.426 | 141 | 76 | 3 | 14 | 146 | 55 | 195 | 2.05e-32 | 117 |
Msa0083080 | AT4G00416.1 | 36.641 | 131 | 73 | 4 | 15 | 140 | 9 | 134 | 4.66e-25 | 95.1 |
Msa0083080 | AT5G35338.2 | 32.836 | 134 | 77 | 5 | 20 | 146 | 2 | 129 | 1.54e-18 | 78.2 |
Find 46 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAAACCTTGTGGAGTCTT+TGG | 0.225609 | 1_2:-62079528 | None:intergenic |
TTCTGTTGCTCAATAAATTC+TGG | 0.227479 | 1_2:-62079732 | None:intergenic |
TGGTGTCTTGCATAATCTTT+GGG | 0.244821 | 1_2:-62079707 | None:intergenic |
ATGGTGTCTTGCATAATCTT+TGG | 0.279956 | 1_2:-62079708 | None:intergenic |
TGTGGAGTCTTTGGAATGTT+AGG | 0.313454 | 1_2:-62079519 | None:intergenic |
AATGCAAACTTTGCATGAAA+TGG | 0.372986 | 1_2:+62079349 | Msa0083080:CDS |
GCTAGAAGAAGATGGAGTTT+TGG | 0.380480 | 1_2:-62078362 | None:intergenic |
TAGAAAGGATTACTCTAAGT+TGG | 0.402694 | 1_2:+62079566 | Msa0083080:CDS |
ATATGCTGCTATCTCATTGC+GGG | 0.412618 | 1_2:-62079628 | None:intergenic |
TTGTTTATTTCTTTCTCTCT+TGG | 0.417634 | 1_2:-62078249 | None:intergenic |
TCTGTTGCTCAATAAATTCT+GGG | 0.422405 | 1_2:-62079731 | None:intergenic |
ACAAGGTTTCAAGAGAATCT+TGG | 0.424100 | 1_2:+62079539 | Msa0083080:CDS |
TTATTTCTTTCTCTCTTGGT+AGG | 0.426600 | 1_2:-62078245 | None:intergenic |
TGCTACAATCAAAAGGCTCT+CGG | 0.434619 | 1_2:-62079422 | None:intergenic |
CTGAGACAGTGTTTAGAGTT+CGG | 0.435132 | 1_2:-62078296 | None:intergenic |
ATATTGAATATGATTCTTCT+CGG | 0.438557 | 1_2:+62079478 | Msa0083080:CDS |
GAGAATCTTGGTGCTTAGAA+AGG | 0.448776 | 1_2:+62079551 | Msa0083080:CDS |
TTGTTTGCTGAATCAATGTC+GGG | 0.454590 | 1_2:+62078337 | Msa0083080:exon |
CTTTCTCTCTTGGTAGGTGG+TGG | 0.465992 | 1_2:-62078239 | None:intergenic |
AATATGATTCTTCTCGGACA+TGG | 0.476290 | 1_2:+62079484 | Msa0083080:CDS |
TGATACACAAGAGGAGTTTG+AGG | 0.485320 | 1_2:+62079380 | Msa0083080:CDS |
TCTTACTACATCACACCTAC+AGG | 0.516283 | 1_2:+62079591 | Msa0083080:CDS |
ATATGATTCTTCTCGGACAT+GGG | 0.527218 | 1_2:+62079485 | Msa0083080:CDS |
TTTCTTTCTCTCTTGGTAGG+TGG | 0.528808 | 1_2:-62078242 | None:intergenic |
AAATAAACAACTGTTCCGTT+CGG | 0.538892 | 1_2:+62078262 | Msa0083080:five_prime_UTR |
TTTGTTTGCTGAATCAATGT+CGG | 0.540179 | 1_2:+62078336 | Msa0083080:exon |
AGAATTTATTGAGCAACAGA+AGG | 0.543104 | 1_2:+62079734 | Msa0083080:CDS |
GAATCATATTCAATATCAGC+AGG | 0.552211 | 1_2:-62079471 | None:intergenic |
GCAGATACACCACTGGGTTG+AGG | 0.552234 | 1_2:-62079663 | None:intergenic |
AACTCCATCTTCTTCTAGCA+AGG | 0.558032 | 1_2:+62078366 | Msa0083080:CDS |
AAGATTCTCTTGAAACCTTG+TGG | 0.558153 | 1_2:-62079537 | None:intergenic |
AGTACCTTGCTAGAAGAAGA+TGG | 0.558912 | 1_2:-62078370 | None:intergenic |
GGTGGTGGCGTTTATAAGAG+AGG | 0.577882 | 1_2:-62078224 | None:intergenic |
ATCCGCAGCAGATACACCAC+TGG | 0.582537 | 1_2:-62079670 | None:intergenic |
ACTCTAAACACTGTCTCAGT+CGG | 0.601352 | 1_2:+62078300 | Msa0083080:five_prime_UTR |
TAAACAACTGTTCCGTTCGG+TGG | 0.609115 | 1_2:+62078265 | Msa0083080:five_prime_UTR |
ACCCAGTGGTGTATCTGCTG+CGG | 0.611469 | 1_2:+62079668 | Msa0083080:CDS |
GATATGCTGCTATCTCATTG+CGG | 0.625471 | 1_2:-62079629 | None:intergenic |
TTGCTCAATAAATTCTGGGA+TGG | 0.634957 | 1_2:-62079727 | None:intergenic |
AACATTCCAAAGACTCCACA+AGG | 0.636979 | 1_2:+62079522 | Msa0083080:CDS |
GAGAGTGATTGATACACAAG+AGG | 0.640381 | 1_2:+62079371 | Msa0083080:CDS |
GGTGTCTTGCATAATCTTTG+GGG | 0.668330 | 1_2:-62079706 | None:intergenic |
GCTCTCGGATGATCTTATGA+CGG | 0.668353 | 1_2:-62079407 | None:intergenic |
TCCGCAGCAGATACACCACT+GGG | 0.695152 | 1_2:-62079669 | None:intergenic |
TCGGAGAAGATACCACCGAA+CGG | 0.717114 | 1_2:-62078277 | None:intergenic |
AAAGATCATCCTCAACCCAG+TGG | 0.719856 | 1_2:+62079654 | Msa0083080:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAAAAATAGTTGAAAACTAA+GGG | - | chr1_2:62078450-62078469 | None:intergenic | 20.0% |
!! | AGAAAAATAGTTGAAAACTA+AGG | - | chr1_2:62078451-62078470 | None:intergenic | 20.0% |
!!! | TTACTTGTTAATTGAATTGA+AGG | + | chr1_2:62078530-62078549 | Msa0083080:intron | 20.0% |
!!! | TACTTGTTAATTGAATTGAA+GGG | + | chr1_2:62078531-62078550 | Msa0083080:intron | 20.0% |
!!! | TGTTAATTTTCTGTTTTGAA+TGG | + | chr1_2:62078675-62078694 | Msa0083080:intron | 20.0% |
!!! | GTTAATTTTCTGTTTTGAAT+GGG | + | chr1_2:62078676-62078695 | Msa0083080:intron | 20.0% |
!!! | TTAATTTTCTGTTTTGAATG+GGG | + | chr1_2:62078677-62078696 | Msa0083080:intron | 20.0% |
!! | TAAATTGTGCACTTATAATT+TGG | + | chr1_2:62079077-62079096 | Msa0083080:intron | 20.0% |
!! | CTCAATATAAAAACCTAATA+TGG | - | chr1_2:62079141-62079160 | None:intergenic | 20.0% |
!!! | ATGGATTATTAAGTCTTTAT+TGG | + | chr1_2:62079269-62079288 | Msa0083080:intron | 20.0% |
!! | TGGATTATTAAGTCTTTATT+GGG | + | chr1_2:62079270-62079289 | Msa0083080:intron | 20.0% |
!! | ATATTGAATATGATTCTTCT+CGG | + | chr1_2:62079478-62079497 | Msa0083080:CDS | 20.0% |
!! | GAAAAATAGTTGAAAACTAA+GGG | - | chr1_2:62078450-62078469 | None:intergenic | 20.0% |
!! | AGAAAAATAGTTGAAAACTA+AGG | - | chr1_2:62078451-62078470 | None:intergenic | 20.0% |
!!! | TTACTTGTTAATTGAATTGA+AGG | + | chr1_2:62078530-62078549 | Msa0083080:intron | 20.0% |
!!! | TACTTGTTAATTGAATTGAA+GGG | + | chr1_2:62078531-62078550 | Msa0083080:intron | 20.0% |
!!! | TGTTAATTTTCTGTTTTGAA+TGG | + | chr1_2:62078675-62078694 | Msa0083080:intron | 20.0% |
!!! | GTTAATTTTCTGTTTTGAAT+GGG | + | chr1_2:62078676-62078695 | Msa0083080:intron | 20.0% |
!!! | TTAATTTTCTGTTTTGAATG+GGG | + | chr1_2:62078677-62078696 | Msa0083080:intron | 20.0% |
!! | TAAATTGTGCACTTATAATT+TGG | + | chr1_2:62079077-62079096 | Msa0083080:intron | 20.0% |
!! | CTCAATATAAAAACCTAATA+TGG | - | chr1_2:62079141-62079160 | None:intergenic | 20.0% |
!!! | ATGGATTATTAAGTCTTTAT+TGG | + | chr1_2:62079269-62079288 | Msa0083080:intron | 20.0% |
!! | TGGATTATTAAGTCTTTATT+GGG | + | chr1_2:62079270-62079289 | Msa0083080:intron | 20.0% |
!! | ATATTGAATATGATTCTTCT+CGG | + | chr1_2:62079478-62079497 | Msa0083080:CDS | 20.0% |
!! | TTGTTTATTTCTTTCTCTCT+TGG | - | chr1_2:62078252-62078271 | None:intergenic | 25.0% |
!!! | ACTCGATTCCTTTTTTTTTA+GGG | + | chr1_2:62078415-62078434 | Msa0083080:intron | 25.0% |
! | TGACAAAACCCTAAAAAAAA+AGG | - | chr1_2:62078426-62078445 | None:intergenic | 25.0% |
!! | TCTATTCTTGTTAACTCTTT+TGG | + | chr1_2:62078474-62078493 | Msa0083080:intron | 25.0% |
!! | CTATTCTTGTTAACTCTTTT+GGG | + | chr1_2:62078475-62078494 | Msa0083080:intron | 25.0% |
!!! | TGATGTTCTTTTTTCGTTTT+AGG | + | chr1_2:62078499-62078518 | Msa0083080:intron | 25.0% |
!!! | GATGTTCTTTTTTCGTTTTA+GGG | + | chr1_2:62078500-62078519 | Msa0083080:intron | 25.0% |
! | AAATCGTAGGAGTAAAAAAA+AGG | + | chr1_2:62078968-62078987 | Msa0083080:intron | 25.0% |
! | AATCGTAGGAGTAAAAAAAA+GGG | + | chr1_2:62078969-62078988 | Msa0083080:intron | 25.0% |
! | GAGTAAAAAAAAGGGTTTAA+GGG | + | chr1_2:62078977-62078996 | Msa0083080:intron | 25.0% |
! | TATAAGTGCACAATTTAACA+TGG | - | chr1_2:62079074-62079093 | None:intergenic | 25.0% |
!!! | TTGGTTTTTTGTCAATAGTA+TGG | + | chr1_2:62079250-62079269 | Msa0083080:intron | 25.0% |
!! | TTGTTTATTTCTTTCTCTCT+TGG | - | chr1_2:62078252-62078271 | None:intergenic | 25.0% |
!!! | ACTCGATTCCTTTTTTTTTA+GGG | + | chr1_2:62078415-62078434 | Msa0083080:intron | 25.0% |
! | TGACAAAACCCTAAAAAAAA+AGG | - | chr1_2:62078426-62078445 | None:intergenic | 25.0% |
!! | TCTATTCTTGTTAACTCTTT+TGG | + | chr1_2:62078474-62078493 | Msa0083080:intron | 25.0% |
!! | CTATTCTTGTTAACTCTTTT+GGG | + | chr1_2:62078475-62078494 | Msa0083080:intron | 25.0% |
!!! | TGATGTTCTTTTTTCGTTTT+AGG | + | chr1_2:62078499-62078518 | Msa0083080:intron | 25.0% |
!!! | GATGTTCTTTTTTCGTTTTA+GGG | + | chr1_2:62078500-62078519 | Msa0083080:intron | 25.0% |
! | AAATCGTAGGAGTAAAAAAA+AGG | + | chr1_2:62078968-62078987 | Msa0083080:intron | 25.0% |
! | AATCGTAGGAGTAAAAAAAA+GGG | + | chr1_2:62078969-62078988 | Msa0083080:intron | 25.0% |
! | GAGTAAAAAAAAGGGTTTAA+GGG | + | chr1_2:62078977-62078996 | Msa0083080:intron | 25.0% |
! | TATAAGTGCACAATTTAACA+TGG | - | chr1_2:62079074-62079093 | None:intergenic | 25.0% |
!!! | TTGGTTTTTTGTCAATAGTA+TGG | + | chr1_2:62079250-62079269 | Msa0083080:intron | 25.0% |
! | TTATTTCTTTCTCTCTTGGT+AGG | - | chr1_2:62078248-62078267 | None:intergenic | 30.0% |
AAATAAACAACTGTTCCGTT+CGG | + | chr1_2:62078262-62078281 | Msa0083080:five_prime_UTR | 30.0% | |
! | TTTGTTTGCTGAATCAATGT+CGG | + | chr1_2:62078336-62078355 | Msa0083080:exon | 30.0% |
!!! | CACTCGATTCCTTTTTTTTT+AGG | + | chr1_2:62078414-62078433 | Msa0083080:intron | 30.0% |
AAAAAAATCTTACGCACCTA+GGG | - | chr1_2:62078600-62078619 | None:intergenic | 30.0% | |
AAAAAAAATCTTACGCACCT+AGG | - | chr1_2:62078601-62078620 | None:intergenic | 30.0% | |
ATTGTTAAACCAAGATAGAG+TGG | + | chr1_2:62078708-62078727 | Msa0083080:intron | 30.0% | |
! | TGTTATGTTGCTGTTAAGTA+TGG | + | chr1_2:62078769-62078788 | Msa0083080:intron | 30.0% |
! | GTTATGTTGCTGTTAAGTAT+GGG | + | chr1_2:62078770-62078789 | Msa0083080:intron | 30.0% |
AATATCAGATCTGCAACAAA+AGG | + | chr1_2:62078798-62078817 | Msa0083080:intron | 30.0% | |
! | TTGCTAAATTGTTTCTCTTC+CGG | + | chr1_2:62078904-62078923 | Msa0083080:intron | 30.0% |
TGAAATCCAGACAAATCAAA+GGG | - | chr1_2:62078948-62078967 | None:intergenic | 30.0% | |
TTGAAATCCAGACAAATCAA+AGG | - | chr1_2:62078949-62078968 | None:intergenic | 30.0% | |
GGAGTAAAAAAAAGGGTTTA+AGG | + | chr1_2:62078976-62078995 | Msa0083080:intron | 30.0% | |
ATTGTGCACTTATAATTTGG+TGG | + | chr1_2:62079080-62079099 | Msa0083080:intron | 30.0% | |
ATAGACTGTGATACCATATT+AGG | + | chr1_2:62079125-62079144 | Msa0083080:intron | 30.0% | |
!!! | GCTTATCACTTTTTTAACAC+AGG | + | chr1_2:62079225-62079244 | Msa0083080:intron | 30.0% |
AATGCAAACTTTGCATGAAA+TGG | + | chr1_2:62079349-62079368 | Msa0083080:CDS | 30.0% | |
GAATCATATTCAATATCAGC+AGG | - | chr1_2:62079474-62079493 | None:intergenic | 30.0% | |
TAGAAAGGATTACTCTAAGT+TGG | + | chr1_2:62079566-62079585 | Msa0083080:CDS | 30.0% | |
TCTGTTGCTCAATAAATTCT+GGG | - | chr1_2:62079734-62079753 | None:intergenic | 30.0% | |
TTCTGTTGCTCAATAAATTC+TGG | - | chr1_2:62079735-62079754 | None:intergenic | 30.0% | |
AGAATTTATTGAGCAACAGA+AGG | + | chr1_2:62079734-62079753 | Msa0083080:CDS | 30.0% | |
! | TTATTTCTTTCTCTCTTGGT+AGG | - | chr1_2:62078248-62078267 | None:intergenic | 30.0% |
AAATAAACAACTGTTCCGTT+CGG | + | chr1_2:62078262-62078281 | Msa0083080:five_prime_UTR | 30.0% | |
! | TTTGTTTGCTGAATCAATGT+CGG | + | chr1_2:62078336-62078355 | Msa0083080:exon | 30.0% |
!!! | CACTCGATTCCTTTTTTTTT+AGG | + | chr1_2:62078414-62078433 | Msa0083080:intron | 30.0% |
AAAAAAATCTTACGCACCTA+GGG | - | chr1_2:62078600-62078619 | None:intergenic | 30.0% | |
AAAAAAAATCTTACGCACCT+AGG | - | chr1_2:62078601-62078620 | None:intergenic | 30.0% | |
ATTGTTAAACCAAGATAGAG+TGG | + | chr1_2:62078708-62078727 | Msa0083080:intron | 30.0% | |
! | TGTTATGTTGCTGTTAAGTA+TGG | + | chr1_2:62078769-62078788 | Msa0083080:intron | 30.0% |
! | GTTATGTTGCTGTTAAGTAT+GGG | + | chr1_2:62078770-62078789 | Msa0083080:intron | 30.0% |
AATATCAGATCTGCAACAAA+AGG | + | chr1_2:62078798-62078817 | Msa0083080:intron | 30.0% | |
! | TTGCTAAATTGTTTCTCTTC+CGG | + | chr1_2:62078904-62078923 | Msa0083080:intron | 30.0% |
TGAAATCCAGACAAATCAAA+GGG | - | chr1_2:62078948-62078967 | None:intergenic | 30.0% | |
TTGAAATCCAGACAAATCAA+AGG | - | chr1_2:62078949-62078968 | None:intergenic | 30.0% | |
GGAGTAAAAAAAAGGGTTTA+AGG | + | chr1_2:62078976-62078995 | Msa0083080:intron | 30.0% | |
ATTGTGCACTTATAATTTGG+TGG | + | chr1_2:62079080-62079099 | Msa0083080:intron | 30.0% | |
ATAGACTGTGATACCATATT+AGG | + | chr1_2:62079125-62079144 | Msa0083080:intron | 30.0% | |
!!! | GCTTATCACTTTTTTAACAC+AGG | + | chr1_2:62079225-62079244 | Msa0083080:intron | 30.0% |
AATGCAAACTTTGCATGAAA+TGG | + | chr1_2:62079349-62079368 | Msa0083080:CDS | 30.0% | |
GAATCATATTCAATATCAGC+AGG | - | chr1_2:62079474-62079493 | None:intergenic | 30.0% | |
TAGAAAGGATTACTCTAAGT+TGG | + | chr1_2:62079566-62079585 | Msa0083080:CDS | 30.0% | |
TCTGTTGCTCAATAAATTCT+GGG | - | chr1_2:62079734-62079753 | None:intergenic | 30.0% | |
TTCTGTTGCTCAATAAATTC+TGG | - | chr1_2:62079735-62079754 | None:intergenic | 30.0% | |
AGAATTTATTGAGCAACAGA+AGG | + | chr1_2:62079734-62079753 | Msa0083080:CDS | 30.0% | |
! | TTGTTTGCTGAATCAATGTC+GGG | + | chr1_2:62078337-62078356 | Msa0083080:exon | 35.0% |
!!! | GTGCAGATTTGTTTTTATCC+TGG | + | chr1_2:62078626-62078645 | Msa0083080:intron | 35.0% |
! | TCTAGTTTCTCATAAGATCC+AGG | - | chr1_2:62078647-62078666 | None:intergenic | 35.0% |
CAGAAAATTCCACTCTATCT+TGG | - | chr1_2:62078720-62078739 | None:intergenic | 35.0% | |
TGTCTGGATTTCAAAATCGT+AGG | + | chr1_2:62078955-62078974 | Msa0083080:intron | 35.0% | |
!!! | TTAAGGGTTTTTTGCATGTC+TGG | + | chr1_2:62078993-62079012 | Msa0083080:intron | 35.0% |
! | TTTTGCATGTCTGGATTATC+CGG | + | chr1_2:62079002-62079021 | Msa0083080:intron | 35.0% |
!!! | CACTTTTTTAACACAGGACT+TGG | + | chr1_2:62079231-62079250 | Msa0083080:intron | 35.0% |
ATATATATCAACTGAGCCCT+GGG | - | chr1_2:62079322-62079341 | None:intergenic | 35.0% | |
!! | GCCTTTTGATTGTAGCAAAA+AGG | + | chr1_2:62079428-62079447 | Msa0083080:CDS | 35.0% |
! | GCCTTTTTGCTACAATCAAA+AGG | - | chr1_2:62079432-62079451 | None:intergenic | 35.0% |
AATATGATTCTTCTCGGACA+TGG | + | chr1_2:62079484-62079503 | Msa0083080:CDS | 35.0% | |
ATATGATTCTTCTCGGACAT+GGG | + | chr1_2:62079485-62079504 | Msa0083080:CDS | 35.0% | |
AAGATTCTCTTGAAACCTTG+TGG | - | chr1_2:62079540-62079559 | None:intergenic | 35.0% | |
ACAAGGTTTCAAGAGAATCT+TGG | + | chr1_2:62079539-62079558 | Msa0083080:CDS | 35.0% | |
!!! | GTTCTCAGTTTTTTACCTGT+AGG | - | chr1_2:62079609-62079628 | None:intergenic | 35.0% |
TGGTGTCTTGCATAATCTTT+GGG | - | chr1_2:62079710-62079729 | None:intergenic | 35.0% | |
ATGGTGTCTTGCATAATCTT+TGG | - | chr1_2:62079711-62079730 | None:intergenic | 35.0% | |
! | TTGCTCAATAAATTCTGGGA+TGG | - | chr1_2:62079730-62079749 | None:intergenic | 35.0% |
! | TTGTTTGCTGAATCAATGTC+GGG | + | chr1_2:62078337-62078356 | Msa0083080:exon | 35.0% |
!!! | GTGCAGATTTGTTTTTATCC+TGG | + | chr1_2:62078626-62078645 | Msa0083080:intron | 35.0% |
! | TCTAGTTTCTCATAAGATCC+AGG | - | chr1_2:62078647-62078666 | None:intergenic | 35.0% |
CAGAAAATTCCACTCTATCT+TGG | - | chr1_2:62078720-62078739 | None:intergenic | 35.0% | |
TGTCTGGATTTCAAAATCGT+AGG | + | chr1_2:62078955-62078974 | Msa0083080:intron | 35.0% | |
!!! | TTAAGGGTTTTTTGCATGTC+TGG | + | chr1_2:62078993-62079012 | Msa0083080:intron | 35.0% |
! | TTTTGCATGTCTGGATTATC+CGG | + | chr1_2:62079002-62079021 | Msa0083080:intron | 35.0% |
!!! | CACTTTTTTAACACAGGACT+TGG | + | chr1_2:62079231-62079250 | Msa0083080:intron | 35.0% |
ATATATATCAACTGAGCCCT+GGG | - | chr1_2:62079322-62079341 | None:intergenic | 35.0% | |
!! | GCCTTTTGATTGTAGCAAAA+AGG | + | chr1_2:62079428-62079447 | Msa0083080:CDS | 35.0% |
! | GCCTTTTTGCTACAATCAAA+AGG | - | chr1_2:62079432-62079451 | None:intergenic | 35.0% |
AATATGATTCTTCTCGGACA+TGG | + | chr1_2:62079484-62079503 | Msa0083080:CDS | 35.0% | |
ATATGATTCTTCTCGGACAT+GGG | + | chr1_2:62079485-62079504 | Msa0083080:CDS | 35.0% | |
AAGATTCTCTTGAAACCTTG+TGG | - | chr1_2:62079540-62079559 | None:intergenic | 35.0% | |
ACAAGGTTTCAAGAGAATCT+TGG | + | chr1_2:62079539-62079558 | Msa0083080:CDS | 35.0% | |
!!! | GTTCTCAGTTTTTTACCTGT+AGG | - | chr1_2:62079609-62079628 | None:intergenic | 35.0% |
TGGTGTCTTGCATAATCTTT+GGG | - | chr1_2:62079710-62079729 | None:intergenic | 35.0% | |
ATGGTGTCTTGCATAATCTT+TGG | - | chr1_2:62079711-62079730 | None:intergenic | 35.0% | |
! | TTGCTCAATAAATTCTGGGA+TGG | - | chr1_2:62079730-62079749 | None:intergenic | 35.0% |
TTTCTTTCTCTCTTGGTAGG+TGG | - | chr1_2:62078245-62078264 | None:intergenic | 40.0% | |
! | CTGAGACAGTGTTTAGAGTT+CGG | - | chr1_2:62078299-62078318 | None:intergenic | 40.0% |
ACTCTAAACACTGTCTCAGT+CGG | + | chr1_2:62078300-62078319 | Msa0083080:five_prime_UTR | 40.0% | |
! | GCTAGAAGAAGATGGAGTTT+TGG | - | chr1_2:62078365-62078384 | None:intergenic | 40.0% |
AACTCCATCTTCTTCTAGCA+AGG | + | chr1_2:62078366-62078385 | Msa0083080:CDS | 40.0% | |
AGTACCTTGCTAGAAGAAGA+TGG | - | chr1_2:62078373-62078392 | None:intergenic | 40.0% | |
TCAATTTGATTCCGAACCCT+AGG | + | chr1_2:62078581-62078600 | Msa0083080:intron | 40.0% | |
! | ATGTTGCTGTTAAGTATGGG+TGG | + | chr1_2:62078773-62078792 | Msa0083080:intron | 40.0% |
AGACAAATCAAAGGGCTTTG+CGG | - | chr1_2:62078940-62078959 | None:intergenic | 40.0% | |
GATTATCCGGACAAATCAGA+GGG | + | chr1_2:62079015-62079034 | Msa0083080:intron | 40.0% | |
AGTCTAACTCATCCCAAAAC+CGG | + | chr1_2:62079159-62079178 | Msa0083080:intron | 40.0% | |
!! | ACACCATATAAGCCGGTTTT+GGG | - | chr1_2:62079174-62079193 | None:intergenic | 40.0% |
!! | TACACCATATAAGCCGGTTT+TGG | - | chr1_2:62079175-62079194 | None:intergenic | 40.0% |
ACACTCTACACCATATAAGC+CGG | - | chr1_2:62079181-62079200 | None:intergenic | 40.0% | |
CATATATATCAACTGAGCCC+TGG | - | chr1_2:62079323-62079342 | None:intergenic | 40.0% | |
GAGAGTGATTGATACACAAG+AGG | + | chr1_2:62079371-62079390 | Msa0083080:CDS | 40.0% | |
TGATACACAAGAGGAGTTTG+AGG | + | chr1_2:62079380-62079399 | Msa0083080:CDS | 40.0% | |
TGCTACAATCAAAAGGCTCT+CGG | - | chr1_2:62079425-62079444 | None:intergenic | 40.0% | |
!! | TGTGGAGTCTTTGGAATGTT+AGG | - | chr1_2:62079522-62079541 | None:intergenic | 40.0% |
AACATTCCAAAGACTCCACA+AGG | + | chr1_2:62079522-62079541 | Msa0083080:CDS | 40.0% | |
TTGAAACCTTGTGGAGTCTT+TGG | - | chr1_2:62079531-62079550 | None:intergenic | 40.0% | |
!! | GAGAATCTTGGTGCTTAGAA+AGG | + | chr1_2:62079551-62079570 | Msa0083080:CDS | 40.0% |
TCTTACTACATCACACCTAC+AGG | + | chr1_2:62079591-62079610 | Msa0083080:CDS | 40.0% | |
ATATGCTGCTATCTCATTGC+GGG | - | chr1_2:62079631-62079650 | None:intergenic | 40.0% | |
GATATGCTGCTATCTCATTG+CGG | - | chr1_2:62079632-62079651 | None:intergenic | 40.0% | |
GGTGTCTTGCATAATCTTTG+GGG | - | chr1_2:62079709-62079728 | None:intergenic | 40.0% | |
TTTCTTTCTCTCTTGGTAGG+TGG | - | chr1_2:62078245-62078264 | None:intergenic | 40.0% | |
! | CTGAGACAGTGTTTAGAGTT+CGG | - | chr1_2:62078299-62078318 | None:intergenic | 40.0% |
ACTCTAAACACTGTCTCAGT+CGG | + | chr1_2:62078300-62078319 | Msa0083080:five_prime_UTR | 40.0% | |
! | GCTAGAAGAAGATGGAGTTT+TGG | - | chr1_2:62078365-62078384 | None:intergenic | 40.0% |
AACTCCATCTTCTTCTAGCA+AGG | + | chr1_2:62078366-62078385 | Msa0083080:CDS | 40.0% | |
AGTACCTTGCTAGAAGAAGA+TGG | - | chr1_2:62078373-62078392 | None:intergenic | 40.0% | |
TCAATTTGATTCCGAACCCT+AGG | + | chr1_2:62078581-62078600 | Msa0083080:intron | 40.0% | |
! | ATGTTGCTGTTAAGTATGGG+TGG | + | chr1_2:62078773-62078792 | Msa0083080:intron | 40.0% |
AGACAAATCAAAGGGCTTTG+CGG | - | chr1_2:62078940-62078959 | None:intergenic | 40.0% | |
GATTATCCGGACAAATCAGA+GGG | + | chr1_2:62079015-62079034 | Msa0083080:intron | 40.0% | |
AGTCTAACTCATCCCAAAAC+CGG | + | chr1_2:62079159-62079178 | Msa0083080:intron | 40.0% | |
!! | ACACCATATAAGCCGGTTTT+GGG | - | chr1_2:62079174-62079193 | None:intergenic | 40.0% |
!! | TACACCATATAAGCCGGTTT+TGG | - | chr1_2:62079175-62079194 | None:intergenic | 40.0% |
ACACTCTACACCATATAAGC+CGG | - | chr1_2:62079181-62079200 | None:intergenic | 40.0% | |
CATATATATCAACTGAGCCC+TGG | - | chr1_2:62079323-62079342 | None:intergenic | 40.0% | |
GAGAGTGATTGATACACAAG+AGG | + | chr1_2:62079371-62079390 | Msa0083080:CDS | 40.0% | |
TGATACACAAGAGGAGTTTG+AGG | + | chr1_2:62079380-62079399 | Msa0083080:CDS | 40.0% | |
TGCTACAATCAAAAGGCTCT+CGG | - | chr1_2:62079425-62079444 | None:intergenic | 40.0% | |
!! | TGTGGAGTCTTTGGAATGTT+AGG | - | chr1_2:62079522-62079541 | None:intergenic | 40.0% |
AACATTCCAAAGACTCCACA+AGG | + | chr1_2:62079522-62079541 | Msa0083080:CDS | 40.0% | |
TTGAAACCTTGTGGAGTCTT+TGG | - | chr1_2:62079531-62079550 | None:intergenic | 40.0% | |
!! | GAGAATCTTGGTGCTTAGAA+AGG | + | chr1_2:62079551-62079570 | Msa0083080:CDS | 40.0% |
TCTTACTACATCACACCTAC+AGG | + | chr1_2:62079591-62079610 | Msa0083080:CDS | 40.0% | |
ATATGCTGCTATCTCATTGC+GGG | - | chr1_2:62079631-62079650 | None:intergenic | 40.0% | |
GATATGCTGCTATCTCATTG+CGG | - | chr1_2:62079632-62079651 | None:intergenic | 40.0% | |
GGTGTCTTGCATAATCTTTG+GGG | - | chr1_2:62079709-62079728 | None:intergenic | 40.0% | |
TAAACAACTGTTCCGTTCGG+TGG | + | chr1_2:62078265-62078284 | Msa0083080:five_prime_UTR | 45.0% | |
AATCTTACGCACCTAGGGTT+CGG | - | chr1_2:62078595-62078614 | None:intergenic | 45.0% | |
!! | GCAAAGCCCTTTGATTTGTC+TGG | + | chr1_2:62078939-62078958 | Msa0083080:intron | 45.0% |
GGATTATCCGGACAAATCAG+AGG | + | chr1_2:62079014-62079033 | Msa0083080:intron | 45.0% | |
! | TCAAAGCCCTCTGATTTGTC+CGG | - | chr1_2:62079024-62079043 | None:intergenic | 45.0% |
! | AATTTGGTGGATGACCTGAC+TGG | + | chr1_2:62079093-62079112 | Msa0083080:intron | 45.0% |
TCTATCCAGTGATTCCAGTC+AGG | - | chr1_2:62079110-62079129 | None:intergenic | 45.0% | |
! | CATCCCAAAACCGGCTTATA+TGG | + | chr1_2:62079168-62079187 | Msa0083080:intron | 45.0% |
GGGTTTATTGTGACAGAGAC+CGG | + | chr1_2:62079290-62079309 | Msa0083080:intron | 45.0% | |
GCTCTCGGATGATCTTATGA+CGG | - | chr1_2:62079410-62079429 | None:intergenic | 45.0% | |
AAAGATCATCCTCAACCCAG+TGG | + | chr1_2:62079654-62079673 | Msa0083080:CDS | 45.0% | |
TAAACAACTGTTCCGTTCGG+TGG | + | chr1_2:62078265-62078284 | Msa0083080:five_prime_UTR | 45.0% | |
AATCTTACGCACCTAGGGTT+CGG | - | chr1_2:62078595-62078614 | None:intergenic | 45.0% | |
!! | GCAAAGCCCTTTGATTTGTC+TGG | + | chr1_2:62078939-62078958 | Msa0083080:intron | 45.0% |
GGATTATCCGGACAAATCAG+AGG | + | chr1_2:62079014-62079033 | Msa0083080:intron | 45.0% | |
! | TCAAAGCCCTCTGATTTGTC+CGG | - | chr1_2:62079024-62079043 | None:intergenic | 45.0% |
! | AATTTGGTGGATGACCTGAC+TGG | + | chr1_2:62079093-62079112 | Msa0083080:intron | 45.0% |
TCTATCCAGTGATTCCAGTC+AGG | - | chr1_2:62079110-62079129 | None:intergenic | 45.0% | |
! | CATCCCAAAACCGGCTTATA+TGG | + | chr1_2:62079168-62079187 | Msa0083080:intron | 45.0% |
GGGTTTATTGTGACAGAGAC+CGG | + | chr1_2:62079290-62079309 | Msa0083080:intron | 45.0% | |
GCTCTCGGATGATCTTATGA+CGG | - | chr1_2:62079410-62079429 | None:intergenic | 45.0% | |
AAAGATCATCCTCAACCCAG+TGG | + | chr1_2:62079654-62079673 | Msa0083080:CDS | 45.0% | |
! | GGTGGTGGCGTTTATAAGAG+AGG | - | chr1_2:62078227-62078246 | None:intergenic | 50.0% |
CTTTCTCTCTTGGTAGGTGG+TGG | - | chr1_2:62078242-62078261 | None:intergenic | 50.0% | |
TCGGAGAAGATACCACCGAA+CGG | - | chr1_2:62078280-62078299 | None:intergenic | 50.0% | |
!! | TCAGAGGGCTTTGAAAAGCG+CGG | + | chr1_2:62079030-62079049 | Msa0083080:intron | 50.0% |
GATGACCTGACTGGAATCAC+TGG | + | chr1_2:62079102-62079121 | Msa0083080:intron | 50.0% | |
! | GGTGGTGGCGTTTATAAGAG+AGG | - | chr1_2:62078227-62078246 | None:intergenic | 50.0% |
CTTTCTCTCTTGGTAGGTGG+TGG | - | chr1_2:62078242-62078261 | None:intergenic | 50.0% | |
TCGGAGAAGATACCACCGAA+CGG | - | chr1_2:62078280-62078299 | None:intergenic | 50.0% | |
!! | TCAGAGGGCTTTGAAAAGCG+CGG | + | chr1_2:62079030-62079049 | Msa0083080:intron | 50.0% |
GATGACCTGACTGGAATCAC+TGG | + | chr1_2:62079102-62079121 | Msa0083080:intron | 50.0% | |
TCAAAGGGCTTTGCGGAGCA+CGG | - | chr1_2:62078933-62078952 | None:intergenic | 55.0% | |
!! | CAGAGGGCTTTGAAAAGCGC+GGG | + | chr1_2:62079031-62079050 | Msa0083080:intron | 55.0% |
!! | GCTTTGAAAAGCGCGGGAGT+TGG | + | chr1_2:62079037-62079056 | Msa0083080:intron | 55.0% |
! | AAAAGCGCGGGAGTTGGAAG+AGG | + | chr1_2:62079043-62079062 | Msa0083080:intron | 55.0% |
GCAGATACACCACTGGGTTG+AGG | - | chr1_2:62079666-62079685 | None:intergenic | 55.0% | |
ACCCAGTGGTGTATCTGCTG+CGG | + | chr1_2:62079668-62079687 | Msa0083080:CDS | 55.0% | |
TCCGCAGCAGATACACCACT+GGG | - | chr1_2:62079672-62079691 | None:intergenic | 55.0% | |
ATCCGCAGCAGATACACCAC+TGG | - | chr1_2:62079673-62079692 | None:intergenic | 55.0% | |
TCAAAGGGCTTTGCGGAGCA+CGG | - | chr1_2:62078933-62078952 | None:intergenic | 55.0% | |
!! | CAGAGGGCTTTGAAAAGCGC+GGG | + | chr1_2:62079031-62079050 | Msa0083080:intron | 55.0% |
!! | GCTTTGAAAAGCGCGGGAGT+TGG | + | chr1_2:62079037-62079056 | Msa0083080:intron | 55.0% |
! | AAAAGCGCGGGAGTTGGAAG+AGG | + | chr1_2:62079043-62079062 | Msa0083080:intron | 55.0% |
GCAGATACACCACTGGGTTG+AGG | - | chr1_2:62079666-62079685 | None:intergenic | 55.0% | |
ACCCAGTGGTGTATCTGCTG+CGG | + | chr1_2:62079668-62079687 | Msa0083080:CDS | 55.0% | |
TCCGCAGCAGATACACCACT+GGG | - | chr1_2:62079672-62079691 | None:intergenic | 55.0% | |
ATCCGCAGCAGATACACCAC+TGG | - | chr1_2:62079673-62079692 | None:intergenic | 55.0% | |
GCTTTGCGGAGCACGGAGAC+CGG | - | chr1_2:62078926-62078945 | None:intergenic | 65.0% | |
ACAGAGACCGGCGATGACCC+AGG | + | chr1_2:62079302-62079321 | Msa0083080:intron | 65.0% | |
CAGAGACCGGCGATGACCCA+GGG | + | chr1_2:62079303-62079322 | Msa0083080:intron | 65.0% | |
ACTGAGCCCTGGGTCATCGC+CGG | - | chr1_2:62079312-62079331 | None:intergenic | 65.0% | |
GCTTTGCGGAGCACGGAGAC+CGG | - | chr1_2:62078926-62078945 | None:intergenic | 65.0% | |
ACAGAGACCGGCGATGACCC+AGG | + | chr1_2:62079302-62079321 | Msa0083080:intron | 65.0% | |
CAGAGACCGGCGATGACCCA+GGG | + | chr1_2:62079303-62079322 | Msa0083080:intron | 65.0% | |
ACTGAGCCCTGGGTCATCGC+CGG | - | chr1_2:62079312-62079331 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 62078189 | 62079800 | 62078189 | ID=Msa0083080;Name=Msa0083080 |
chr1_2 | mRNA | 62078189 | 62079800 | 62078189 | ID=Msa0083080-mRNA-1;Parent=Msa0083080;Name=Msa0083080-mRNA-1;_AED=0.17;_eAED=0.17;_QI=163|0|0.5|1|1|1|2|0|170 |
chr1_2 | exon | 62078189 | 62078387 | 62078189 | ID=Msa0083080-mRNA-1:exon:20575;Parent=Msa0083080-mRNA-1 |
chr1_2 | exon | 62079324 | 62079800 | 62079324 | ID=Msa0083080-mRNA-1:exon:20576;Parent=Msa0083080-mRNA-1 |
chr1_2 | five_prime_UTR | 62078189 | 62078351 | 62078189 | ID=Msa0083080-mRNA-1:five_prime_utr;Parent=Msa0083080-mRNA-1 |
chr1_2 | CDS | 62078352 | 62078387 | 62078352 | ID=Msa0083080-mRNA-1:cds;Parent=Msa0083080-mRNA-1 |
chr1_2 | CDS | 62079324 | 62079800 | 62079324 | ID=Msa0083080-mRNA-1:cds;Parent=Msa0083080-mRNA-1 |
Gene Sequence |
Protein sequence |