AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175430 MtrunA17_Chr1g0196481 85.227 176 3 1 51 226 1 153 6.82e-105 299
Msa0175430 MtrunA17_Chr6g0470951 85.093 161 22 1 66 226 1 159 1.37e-98 283
Msa0175430 MtrunA17_Chr6g0460561 84.138 145 23 0 82 226 1 145 1.34e-84 248
Msa0175430 MtrunA17_Chr6g0472721 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0175430 MtrunA17_Chr6g0472711 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0175430 MtrunA17_Chr6g0472741 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0175430 MtrunA17_Chr6g0472631 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0175430 MtrunA17_Chr6g0472671 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0175430 MtrunA17_Chr6g0472701 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0175430 MtrunA17_Chr6g0470941 83.448 145 24 0 82 226 1 145 3.22e-84 246
Msa0175430 MtrunA17_Chr6g0472691 82.069 145 26 0 82 226 1 145 6.57e-84 246
Msa0175430 MtrunA17_Chr6g0472731 81.379 145 27 0 82 226 1 145 1.04e-82 243
Msa0175430 MtrunA17_Chr6g0472681 81.379 145 27 0 82 226 1 145 1.07e-82 243
Msa0175430 MtrunA17_Chr6g0460591 82.645 121 21 0 91 211 8 128 1.40e-70 211
Msa0175430 MtrunA17_Chr6g0472651 84.259 108 17 0 82 189 1 108 6.36e-62 189
Msa0175430 MtrunA17_Chr6g0472661 84.259 108 17 0 82 189 1 108 6.36e-62 189
Msa0175430 MtrunA17_Chr6g0460571 85.437 103 15 0 117 219 4 106 9.67e-61 186
Msa0175430 MtrunA17_Chr6g0472621 81.731 104 19 0 82 185 1 104 4.98e-56 174
Msa0175430 MtrunA17_Chr6g0460581 78.723 94 20 0 118 211 3 96 9.42e-51 160
Msa0175430 MtrunA17_Chr6g0472641 80.263 76 15 0 82 157 1 76 1.66e-36 123
Msa0175430 MtrunA17_Chr6g0488751 44.366 142 71 3 70 203 95 236 1.65e-34 125
Msa0175430 MtrunA17_Chr3g0091711 37.079 178 101 4 34 203 28 202 2.45e-32 117
Msa0175430 MtrunA17_Chr3g0091691 37.572 173 97 4 39 203 33 202 2.67e-32 117
Msa0175430 MtrunA17_Chr3g0092081 41.135 141 75 3 71 203 106 246 3.63e-32 119
Msa0175430 MtrunA17_Chr3g0092101 39.716 141 77 3 71 203 103 243 1.87e-29 111
Msa0175430 MtrunA17_Chr3g0091651 35.955 89 53 2 120 204 3 91 1.47e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175430 AT3G63030.1 64.444 135 48 0 71 205 25 159 4.44e-65 200
Msa0175430 AT4G22745.1 56.835 139 60 0 70 208 51 189 4.28e-58 182
Msa0175430 AT5G35330.3 40.426 141 76 3 70 202 55 195 6.58e-31 115
Msa0175430 AT5G35330.1 40.426 141 76 3 70 202 55 195 6.58e-31 115
Msa0175430 AT5G35330.4 40.426 141 76 3 70 202 55 195 6.58e-31 115
Msa0175430 AT5G35330.2 40.426 141 76 3 70 202 55 195 6.58e-31 115
Msa0175430 AT4G00416.1 36.641 131 73 4 71 196 9 134 2.67e-24 95.1
Msa0175430 AT5G35338.2 32.836 134 77 5 76 202 2 129 7.38e-18 77.8

Find 74 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAATAGAAAATATATTT+TGG 0.215768 1_4:+61401412 None:intergenic
TTGAAACCTTGTGGAGTCTT+TGG 0.225609 1_4:+61401880 None:intergenic
TTCTGTTGCTCAATAAATTC+TGG 0.227479 1_4:+61401676 None:intergenic
TGGTGTCTTGCATAATCTTT+GGG 0.244821 1_4:+61401701 None:intergenic
ATGGTGTCTTGCATAATCTT+TGG 0.279956 1_4:+61401700 None:intergenic
TTATTTCTAGATATTGTGTT+AGG 0.290857 1_4:-61401537 Msa0175430:three_prime_UTR
TGTGGAGTCTTTGGAATGTT+AGG 0.313454 1_4:+61401889 None:intergenic
GAGCCTGCTAATATATGTTT+AGG 0.323867 1_4:+61401458 None:intergenic
CACCCCGTCCCAAACTATAT+TGG 0.339399 1_4:+61403355 None:intergenic
GTTGTTGTTGATGCTAATTA+TGG 0.357109 1_4:-61401579 Msa0175430:three_prime_UTR
ATGCACAACCCGCCCTCAAT+GGG 0.365477 1_4:+61403391 None:intergenic
AATGCAAACTTTGCATGAAA+TGG 0.372986 1_4:-61402059 Msa0175430:CDS
GCTAGAAGAAGATGGAGTTT+TGG 0.380480 1_4:+61402987 None:intergenic
ACGGGGTGGGTGCATGGAAG+CGG 0.395232 1_4:-61403340 Msa0175430:CDS
TTGTTTCAATACCACTGAAT+TGG 0.402047 1_4:+61401512 None:intergenic
TAGAAAGGATTACTCTAAGT+TGG 0.402694 1_4:-61401842 Msa0175430:CDS
ATATGCTGCTATCTCATTGC+GGG 0.412618 1_4:+61401780 None:intergenic
CGGAAGATCCGCCCCATTGA+GGG 0.417585 1_4:-61403403 Msa0175430:CDS
TGGGTGCATGGAAGCGGAAG+CGG 0.419452 1_4:-61403334 Msa0175430:CDS
TCTGTTGCTCAATAAATTCT+GGG 0.422405 1_4:+61401677 None:intergenic
ACAAGGTTTCAAGAGAATCT+TGG 0.424100 1_4:-61401869 Msa0175430:CDS
AATGCACAACCCGCCCTCAA+TGG 0.433117 1_4:+61403390 None:intergenic
TGCTACAATCAAAAGGCTCT+CGG 0.434619 1_4:+61401986 None:intergenic
ATATTGAATATGATTCTTCT+CGG 0.438557 1_4:-61401930 Msa0175430:CDS
GAGAATCTTGGTGCTTAGAA+AGG 0.448776 1_4:-61401857 Msa0175430:CDS
TTGTTTGCTGAATCAATGTC+GGG 0.454590 1_4:-61403012 Msa0175430:CDS
CATGGAAGCGGAAGCGGAAG+CGG 0.473059 1_4:-61403328 Msa0175430:CDS
TTTGGGACGGGGTGGGTGCA+TGG 0.473918 1_4:-61403346 Msa0175430:CDS
AATATGATTCTTCTCGGACA+TGG 0.476290 1_4:-61401924 Msa0175430:CDS
GCGGAAGATCCGCCCCATTG+AGG 0.480775 1_4:-61403404 Msa0175430:CDS
TGATACACAAGAGGAGTTTG+AGG 0.485320 1_4:-61402028 Msa0175430:CDS
CAATATAGTTTGGGACGGGG+TGG 0.486697 1_4:-61403354 Msa0175430:CDS
TCTCCAATATAGTTTGGGAC+GGG 0.491119 1_4:-61403358 Msa0175430:CDS
AATATAGTTTGGGACGGGGT+GGG 0.496084 1_4:-61403353 Msa0175430:CDS
TATTTCTAGATATTGTGTTA+GGG 0.498956 1_4:-61401536 Msa0175430:three_prime_UTR
TTTCACATGTGGGGTGGTGG+CGG 0.506512 1_4:-61403423 None:intergenic
ATCTCCAATATAGTTTGGGA+CGG 0.510798 1_4:-61403359 Msa0175430:CDS
TAACCTAAACATATATTAGC+AGG 0.512370 1_4:-61401461 Msa0175430:three_prime_UTR
ATGGAAGCGGAAGCGGAAGC+GGG 0.514650 1_4:-61403327 Msa0175430:CDS
TCTTACTACATCACACCTAC+AGG 0.516283 1_4:-61401817 Msa0175430:CDS
AGCGGAAGCGGAAGCGGGAA+CGG 0.516407 1_4:-61403322 Msa0175430:intron
CATATATATCAACTGAGCCC+TGG 0.521418 1_4:+61402088 None:intergenic
ATATGATTCTTCTCGGACAT+GGG 0.527218 1_4:-61401923 Msa0175430:CDS
TTGTTGATGCTAATTATGGT+TGG 0.527749 1_4:-61401575 Msa0175430:three_prime_UTR
GACTTGAGGCAAATTGATTG+AGG 0.537892 1_4:+61401386 None:intergenic
ACTGAGCCCTGGGTCATCGC+CGG 0.538613 1_4:+61402099 None:intergenic
TTTGTTTGCTGAATCAATGT+CGG 0.540179 1_4:-61403013 Msa0175430:CDS
AGAATTTATTGAGCAACAGA+AGG 0.543104 1_4:-61401674 Msa0175430:CDS
ATATATATCAACTGAGCCCT+GGG 0.551958 1_4:+61402089 None:intergenic
GAATCATATTCAATATCAGC+AGG 0.552211 1_4:+61401937 None:intergenic
GCAGATACACCACTGGGTTG+AGG 0.552234 1_4:+61401745 None:intergenic
AAGATCCGCCCCATTGAGGG+CGG 0.556329 1_4:-61403400 Msa0175430:CDS
CTCCAATATAGTTTGGGACG+GGG 0.556947 1_4:-61403357 Msa0175430:CDS
AACTCCATCTTCTTCTAGCA+AGG 0.558032 1_4:-61402983 Msa0175430:intron
AAGATTCTCTTGAAACCTTG+TGG 0.558153 1_4:+61401871 None:intergenic
AGTACCTTGCTAGAAGAAGA+TGG 0.558912 1_4:+61402979 None:intergenic
ACAGAGACCGGCGATGACCC+AGG 0.559040 1_4:-61402106 Msa0175430:intron
AATATATGTTTAGGTTACAA+TGG 0.565398 1_4:+61401467 None:intergenic
AGATCCGCCCCATTGAGGGC+GGG 0.578215 1_4:-61403399 Msa0175430:CDS
CAGAGACCGGCGATGACCCA+GGG 0.581876 1_4:-61402105 Msa0175430:CDS
ATCCGCAGCAGATACACCAC+TGG 0.582537 1_4:+61401738 None:intergenic
ACCCAGTGGTGTATCTGCTG+CGG 0.611469 1_4:-61401740 Msa0175430:CDS
GATATGCTGCTATCTCATTG+CGG 0.625471 1_4:+61401779 None:intergenic
TTGCTCAATAAATTCTGGGA+TGG 0.634957 1_4:+61401681 None:intergenic
AACATTCCAAAGACTCCACA+AGG 0.636979 1_4:-61401886 Msa0175430:CDS
GAGAGTGATTGATACACAAG+AGG 0.640381 1_4:-61402037 Msa0175430:CDS
ACAACCCGCCCTCAATGGGG+CGG 0.643881 1_4:+61403395 None:intergenic
TGTGTTAGGGACCAATTCAG+TGG 0.646630 1_4:-61401523 Msa0175430:three_prime_UTR
GTTTGAGAAATATCATCACA+AGG 0.662203 1_4:-61401613 Msa0175430:exon
TGCACAACCCGCCCTCAATG+GGG 0.667806 1_4:+61403392 None:intergenic
GGTGTCTTGCATAATCTTTG+GGG 0.668330 1_4:+61401702 None:intergenic
GCTCTCGGATGATCTTATGA+CGG 0.668353 1_4:+61402001 None:intergenic
TCCGCAGCAGATACACCACT+GGG 0.695152 1_4:+61401739 None:intergenic
AAAGATCATCCTCAACCCAG+TGG 0.719856 1_4:-61401754 Msa0175430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGAATAGAAAATATATTTT+GGG + chr1_4:61403306-61403325 None:intergenic 10.0%
!!! ATAGAATAGAAAATATATTT+TGG + chr1_4:61403307-61403326 None:intergenic 10.0%
!!! TAGAATAGAAAATATATTTT+GGG + chr1_4:61403306-61403325 None:intergenic 10.0%
!!! ATAGAATAGAAAATATATTT+TGG + chr1_4:61403307-61403326 None:intergenic 10.0%
!!! AACAAATTTAATTTTAGTTC+TGG - chr1_4:61403222-61403241 Msa0175430:intron 15.0%
!!! AACAAATTTAATTTTAGTTC+TGG - chr1_4:61403222-61403241 Msa0175430:intron 15.0%
!!! TTTTTATCTCCAATATAGTT+TGG - chr1_4:61401352-61401371 Msa0175430:three_prime_UTR 20.0%
!!! TTTTATCTCCAATATAGTTT+GGG - chr1_4:61401353-61401372 Msa0175430:three_prime_UTR 20.0%
!!! TAGGCCATTTTTTTTATTTT+CGG + chr1_4:61401489-61401508 None:intergenic 20.0%
!!! TCGATTCCTATTTTTTTTTA+GGG - chr1_4:61401784-61401803 Msa0175430:CDS 20.0%
!! ACAAAACCCTAAAAAAAAAT+AGG + chr1_4:61401793-61401812 None:intergenic 20.0%
!! GAAAAATAGTTGAAAACTAA+GGG + chr1_4:61401819-61401838 None:intergenic 20.0%
!! AGAAAAATAGTTGAAAACTA+AGG + chr1_4:61401820-61401839 None:intergenic 20.0%
!!! TTACTTGTTAATTGAATTGA+AGG - chr1_4:61401899-61401918 Msa0175430:CDS 20.0%
!!! TACTTGTTAATTGAATTGAA+GGG - chr1_4:61401900-61401919 Msa0175430:CDS 20.0%
!!! TGTTAATTTTCTGTTTTGAA+TGG - chr1_4:61402044-61402063 Msa0175430:CDS 20.0%
!!! GTTAATTTTCTGTTTTGAAT+GGG - chr1_4:61402045-61402064 Msa0175430:CDS 20.0%
!!! TTAATTTTCTGTTTTGAATG+GGG - chr1_4:61402046-61402065 Msa0175430:CDS 20.0%
!! CTCAATATAAAAACCTAATA+TGG + chr1_4:61402449-61402468 None:intergenic 20.0%
!!! ATGGATTATTAAGTCTTTAT+TGG - chr1_4:61402577-61402596 Msa0175430:intron 20.0%
!! TGGATTATTAAGTCTTTATT+GGG - chr1_4:61402578-61402597 Msa0175430:intron 20.0%
!! ATATTGAATATGATTCTTCT+CGG - chr1_4:61402786-61402805 Msa0175430:intron 20.0%
!!! TTATTTCTAGATATTGTGTT+AGG - chr1_4:61403179-61403198 Msa0175430:intron 20.0%
!!! TATTTCTAGATATTGTGTTA+GGG - chr1_4:61403180-61403199 Msa0175430:intron 20.0%
!!! AAATTTAATTTTAGTTCTGG+TGG - chr1_4:61403225-61403244 Msa0175430:intron 20.0%
!!! AATATATGTTTAGGTTACAA+TGG + chr1_4:61403252-61403271 None:intergenic 20.0%
!!! TTTTTATCTCCAATATAGTT+TGG - chr1_4:61401352-61401371 Msa0175430:three_prime_UTR 20.0%
!!! TTTTATCTCCAATATAGTTT+GGG - chr1_4:61401353-61401372 Msa0175430:three_prime_UTR 20.0%
!!! TAGGCCATTTTTTTTATTTT+CGG + chr1_4:61401489-61401508 None:intergenic 20.0%
!!! TCGATTCCTATTTTTTTTTA+GGG - chr1_4:61401784-61401803 Msa0175430:CDS 20.0%
!! ACAAAACCCTAAAAAAAAAT+AGG + chr1_4:61401793-61401812 None:intergenic 20.0%
!! GAAAAATAGTTGAAAACTAA+GGG + chr1_4:61401819-61401838 None:intergenic 20.0%
!! AGAAAAATAGTTGAAAACTA+AGG + chr1_4:61401820-61401839 None:intergenic 20.0%
!!! TTACTTGTTAATTGAATTGA+AGG - chr1_4:61401899-61401918 Msa0175430:CDS 20.0%
!!! TACTTGTTAATTGAATTGAA+GGG - chr1_4:61401900-61401919 Msa0175430:CDS 20.0%
!!! TGTTAATTTTCTGTTTTGAA+TGG - chr1_4:61402044-61402063 Msa0175430:CDS 20.0%
!!! GTTAATTTTCTGTTTTGAAT+GGG - chr1_4:61402045-61402064 Msa0175430:CDS 20.0%
!!! TTAATTTTCTGTTTTGAATG+GGG - chr1_4:61402046-61402065 Msa0175430:CDS 20.0%
!! CTCAATATAAAAACCTAATA+TGG + chr1_4:61402449-61402468 None:intergenic 20.0%
!!! ATGGATTATTAAGTCTTTAT+TGG - chr1_4:61402577-61402596 Msa0175430:intron 20.0%
!! TGGATTATTAAGTCTTTATT+GGG - chr1_4:61402578-61402597 Msa0175430:intron 20.0%
!! ATATTGAATATGATTCTTCT+CGG - chr1_4:61402786-61402805 Msa0175430:intron 20.0%
!!! TTATTTCTAGATATTGTGTT+AGG - chr1_4:61403179-61403198 Msa0175430:intron 20.0%
!!! TATTTCTAGATATTGTGTTA+GGG - chr1_4:61403180-61403199 Msa0175430:intron 20.0%
!!! AAATTTAATTTTAGTTCTGG+TGG - chr1_4:61403225-61403244 Msa0175430:intron 20.0%
!!! AATATATGTTTAGGTTACAA+TGG + chr1_4:61403252-61403271 None:intergenic 20.0%
! AGAGAAATATAACACTCTTT+AGG + chr1_4:61401508-61401527 None:intergenic 25.0%
!! TTGTTTATTTCTTTCTCTCT+TGG + chr1_4:61401619-61401638 None:intergenic 25.0%
!!! CTCGATTCCTATTTTTTTTT+AGG - chr1_4:61401783-61401802 Msa0175430:CDS 25.0%
!! TCTATTCTTGTTAACTCTTT+TGG - chr1_4:61401843-61401862 Msa0175430:CDS 25.0%
!! CTATTCTTGTTAACTCTTTT+GGG - chr1_4:61401844-61401863 Msa0175430:CDS 25.0%
!!! TGATGTTCTTTTTTCGTTTT+AGG - chr1_4:61401868-61401887 Msa0175430:CDS 25.0%
!!! GATGTTCTTTTTTCGTTTTA+GGG - chr1_4:61401869-61401888 Msa0175430:CDS 25.0%
! AAATCGTAGGAGTAAAAAAA+AGG - chr1_4:61402338-61402357 Msa0175430:intron 25.0%
! AATCGTAGGAGTAAAAAAAA+GGG - chr1_4:61402339-61402358 Msa0175430:intron 25.0%
! GAGTAAAAAAAAGGGTTTAA+GGG - chr1_4:61402347-61402366 Msa0175430:intron 25.0%
!!! TTGGTTTTTTGTCAATAGTA+TGG - chr1_4:61402558-61402577 Msa0175430:intron 25.0%
! TAACCTAAACATATATTAGC+AGG - chr1_4:61403255-61403274 Msa0175430:intron 25.0%
! AGAGAAATATAACACTCTTT+AGG + chr1_4:61401508-61401527 None:intergenic 25.0%
!! TTGTTTATTTCTTTCTCTCT+TGG + chr1_4:61401619-61401638 None:intergenic 25.0%
!!! CTCGATTCCTATTTTTTTTT+AGG - chr1_4:61401783-61401802 Msa0175430:CDS 25.0%
!! TCTATTCTTGTTAACTCTTT+TGG - chr1_4:61401843-61401862 Msa0175430:CDS 25.0%
!! CTATTCTTGTTAACTCTTTT+GGG - chr1_4:61401844-61401863 Msa0175430:CDS 25.0%
!!! TGATGTTCTTTTTTCGTTTT+AGG - chr1_4:61401868-61401887 Msa0175430:CDS 25.0%
!!! GATGTTCTTTTTTCGTTTTA+GGG - chr1_4:61401869-61401888 Msa0175430:CDS 25.0%
! AAATCGTAGGAGTAAAAAAA+AGG - chr1_4:61402338-61402357 Msa0175430:intron 25.0%
! AATCGTAGGAGTAAAAAAAA+GGG - chr1_4:61402339-61402358 Msa0175430:intron 25.0%
! GAGTAAAAAAAAGGGTTTAA+GGG - chr1_4:61402347-61402366 Msa0175430:intron 25.0%
!!! TTGGTTTTTTGTCAATAGTA+TGG - chr1_4:61402558-61402577 Msa0175430:intron 25.0%
! TAACCTAAACATATATTAGC+AGG - chr1_4:61403255-61403274 Msa0175430:intron 25.0%
CCTAGGTAATCTATACTATA+GGG - chr1_4:61401456-61401475 Msa0175430:three_prime_UTR 30.0%
CTAGGTAATCTATACTATAG+GGG - chr1_4:61401457-61401476 Msa0175430:three_prime_UTR 30.0%
TAATCTATACTATAGGGGTA+TGG - chr1_4:61401462-61401481 Msa0175430:three_prime_UTR 30.0%
! AATCTATACTATAGGGGTAT+GGG - chr1_4:61401463-61401482 Msa0175430:three_prime_UTR 30.0%
TGGGCCGAAAATAAAAAAAA+TGG - chr1_4:61401482-61401501 Msa0175430:three_prime_UTR 30.0%
! TTATTTCTTTCTCTCTTGGT+AGG + chr1_4:61401615-61401634 None:intergenic 30.0%
AAATAAACAACTGTTCCGTT+CGG - chr1_4:61401629-61401648 Msa0175430:exon 30.0%
! TTTGTTTGCTGAATCAATGT+CGG - chr1_4:61401703-61401722 Msa0175430:CDS 30.0%
AAAATAATCTTACGCACCTA+GGG + chr1_4:61401969-61401988 None:intergenic 30.0%
AAAAATAATCTTACGCACCT+AGG + chr1_4:61401970-61401989 None:intergenic 30.0%
!!! GTGCAGATTTTTTTTTATCC+TGG - chr1_4:61401995-61402014 Msa0175430:CDS 30.0%
ATTGTTAAACCAAGATAGAG+TGG - chr1_4:61402077-61402096 Msa0175430:CDS 30.0%
AATATCAGATCTGCAACAAA+AGG - chr1_4:61402167-61402186 Msa0175430:intron 30.0%
! TTGCTAAATTGTTTCTCTTC+CGG - chr1_4:61402274-61402293 Msa0175430:intron 30.0%
TGAAATCCAGACAAATCAAA+GGG + chr1_4:61402318-61402337 None:intergenic 30.0%
TTGAAATCCAGACAAATCAA+AGG + chr1_4:61402319-61402338 None:intergenic 30.0%
GGAGTAAAAAAAAGGGTTTA+AGG - chr1_4:61402346-61402365 Msa0175430:intron 30.0%
!!! GCTTATCACTTTTTTAACAC+AGG - chr1_4:61402533-61402552 Msa0175430:intron 30.0%
AATGCAAACTTTGCATGAAA+TGG - chr1_4:61402657-61402676 Msa0175430:intron 30.0%
GAATCATATTCAATATCAGC+AGG + chr1_4:61402782-61402801 None:intergenic 30.0%
TAGAAAGGATTACTCTAAGT+TGG - chr1_4:61402874-61402893 Msa0175430:intron 30.0%
TCTGTTGCTCAATAAATTCT+GGG + chr1_4:61403042-61403061 None:intergenic 30.0%
TTCTGTTGCTCAATAAATTC+TGG + chr1_4:61403043-61403062 None:intergenic 30.0%
AGAATTTATTGAGCAACAGA+AGG - chr1_4:61403042-61403061 Msa0175430:intron 30.0%
GTTTGAGAAATATCATCACA+AGG - chr1_4:61403103-61403122 Msa0175430:intron 30.0%
! GTTGTTGTTGATGCTAATTA+TGG - chr1_4:61403137-61403156 Msa0175430:intron 30.0%
TTGTTGATGCTAATTATGGT+TGG - chr1_4:61403141-61403160 Msa0175430:intron 30.0%
TTGTTTCAATACCACTGAAT+TGG + chr1_4:61403207-61403226 None:intergenic 30.0%
TAGAAGAAAAAGAAGACTTG+AGG + chr1_4:61403347-61403366 None:intergenic 30.0%
CCTAGGTAATCTATACTATA+GGG - chr1_4:61401456-61401475 Msa0175430:three_prime_UTR 30.0%
CTAGGTAATCTATACTATAG+GGG - chr1_4:61401457-61401476 Msa0175430:three_prime_UTR 30.0%
TAATCTATACTATAGGGGTA+TGG - chr1_4:61401462-61401481 Msa0175430:three_prime_UTR 30.0%
! AATCTATACTATAGGGGTAT+GGG - chr1_4:61401463-61401482 Msa0175430:three_prime_UTR 30.0%
TGGGCCGAAAATAAAAAAAA+TGG - chr1_4:61401482-61401501 Msa0175430:three_prime_UTR 30.0%
! TTATTTCTTTCTCTCTTGGT+AGG + chr1_4:61401615-61401634 None:intergenic 30.0%
AAATAAACAACTGTTCCGTT+CGG - chr1_4:61401629-61401648 Msa0175430:exon 30.0%
! TTTGTTTGCTGAATCAATGT+CGG - chr1_4:61401703-61401722 Msa0175430:CDS 30.0%
AAAATAATCTTACGCACCTA+GGG + chr1_4:61401969-61401988 None:intergenic 30.0%
AAAAATAATCTTACGCACCT+AGG + chr1_4:61401970-61401989 None:intergenic 30.0%
!!! GTGCAGATTTTTTTTTATCC+TGG - chr1_4:61401995-61402014 Msa0175430:CDS 30.0%
ATTGTTAAACCAAGATAGAG+TGG - chr1_4:61402077-61402096 Msa0175430:CDS 30.0%
AATATCAGATCTGCAACAAA+AGG - chr1_4:61402167-61402186 Msa0175430:intron 30.0%
! TTGCTAAATTGTTTCTCTTC+CGG - chr1_4:61402274-61402293 Msa0175430:intron 30.0%
TGAAATCCAGACAAATCAAA+GGG + chr1_4:61402318-61402337 None:intergenic 30.0%
TTGAAATCCAGACAAATCAA+AGG + chr1_4:61402319-61402338 None:intergenic 30.0%
GGAGTAAAAAAAAGGGTTTA+AGG - chr1_4:61402346-61402365 Msa0175430:intron 30.0%
!!! GCTTATCACTTTTTTAACAC+AGG - chr1_4:61402533-61402552 Msa0175430:intron 30.0%
AATGCAAACTTTGCATGAAA+TGG - chr1_4:61402657-61402676 Msa0175430:intron 30.0%
GAATCATATTCAATATCAGC+AGG + chr1_4:61402782-61402801 None:intergenic 30.0%
TAGAAAGGATTACTCTAAGT+TGG - chr1_4:61402874-61402893 Msa0175430:intron 30.0%
TCTGTTGCTCAATAAATTCT+GGG + chr1_4:61403042-61403061 None:intergenic 30.0%
TTCTGTTGCTCAATAAATTC+TGG + chr1_4:61403043-61403062 None:intergenic 30.0%
AGAATTTATTGAGCAACAGA+AGG - chr1_4:61403042-61403061 Msa0175430:intron 30.0%
GTTTGAGAAATATCATCACA+AGG - chr1_4:61403103-61403122 Msa0175430:intron 30.0%
! GTTGTTGTTGATGCTAATTA+TGG - chr1_4:61403137-61403156 Msa0175430:intron 30.0%
TTGTTGATGCTAATTATGGT+TGG - chr1_4:61403141-61403160 Msa0175430:intron 30.0%
TTGTTTCAATACCACTGAAT+TGG + chr1_4:61403207-61403226 None:intergenic 30.0%
TAGAAGAAAAAGAAGACTTG+AGG + chr1_4:61403347-61403366 None:intergenic 30.0%
ATCTCCAATATAGTTTGGGA+CGG - chr1_4:61401357-61401376 Msa0175430:three_prime_UTR 35.0%
GCCTAGGTAATCTATACTAT+AGG - chr1_4:61401455-61401474 Msa0175430:three_prime_UTR 35.0%
CCCTATAGTATAGATTACCT+AGG + chr1_4:61401459-61401478 None:intergenic 35.0%
AGATCCGTTAAAAATCTGCT+TGG - chr1_4:61401531-61401550 Msa0175430:three_prime_UTR 35.0%
GATCCGTTAAAAATCTGCTT+GGG - chr1_4:61401532-61401551 Msa0175430:three_prime_UTR 35.0%
! TGTCCCAAGCAGATTTTTAA+CGG + chr1_4:61401538-61401557 None:intergenic 35.0%
! TTGTTTGCTGAATCAATGTC+GGG - chr1_4:61401704-61401723 Msa0175430:CDS 35.0%
! TCTAGTTTCTCATAAGATCC+AGG + chr1_4:61402016-61402035 None:intergenic 35.0%
CAGAAAATTCCACTCTATCT+TGG + chr1_4:61402089-61402108 None:intergenic 35.0%
TGTTATGCTGCTGTTAAGTA+TGG - chr1_4:61402138-61402157 Msa0175430:intron 35.0%
GTTATGCTGCTGTTAAGTAT+GGG - chr1_4:61402139-61402158 Msa0175430:intron 35.0%
TGTCTGGATTTCAAAATCGT+AGG - chr1_4:61402325-61402344 Msa0175430:intron 35.0%
!!! TTAAGGGTTTTTTGCATGTC+TGG - chr1_4:61402363-61402382 Msa0175430:intron 35.0%
! TTTTGCATGTCTGGATTATC+CGG - chr1_4:61402372-61402391 Msa0175430:intron 35.0%
AGGAACTGTGATACCATATT+AGG - chr1_4:61402433-61402452 Msa0175430:intron 35.0%
!!! CACTTTTTTAACACAGGACT+TGG - chr1_4:61402539-61402558 Msa0175430:intron 35.0%
ATATATATCAACTGAGCCCT+GGG + chr1_4:61402630-61402649 None:intergenic 35.0%
!! GCCTTTTGATTGTAGCAAAA+AGG - chr1_4:61402736-61402755 Msa0175430:intron 35.0%
! GCCTTTTTGCTACAATCAAA+AGG + chr1_4:61402740-61402759 None:intergenic 35.0%
AATATGATTCTTCTCGGACA+TGG - chr1_4:61402792-61402811 Msa0175430:intron 35.0%
ATATGATTCTTCTCGGACAT+GGG - chr1_4:61402793-61402812 Msa0175430:intron 35.0%
AAGATTCTCTTGAAACCTTG+TGG + chr1_4:61402848-61402867 None:intergenic 35.0%
ACAAGGTTTCAAGAGAATCT+TGG - chr1_4:61402847-61402866 Msa0175430:intron 35.0%
!!! GTTCTCAGTTTTTTACCTGT+AGG + chr1_4:61402917-61402936 None:intergenic 35.0%
TGGTGTCTTGCATAATCTTT+GGG + chr1_4:61403018-61403037 None:intergenic 35.0%
ATGGTGTCTTGCATAATCTT+TGG + chr1_4:61403019-61403038 None:intergenic 35.0%
! TTGCTCAATAAATTCTGGGA+TGG + chr1_4:61403038-61403057 None:intergenic 35.0%
GAGCCTGCTAATATATGTTT+AGG + chr1_4:61403261-61403280 None:intergenic 35.0%
ATCTCCAATATAGTTTGGGA+CGG - chr1_4:61401357-61401376 Msa0175430:three_prime_UTR 35.0%
GCCTAGGTAATCTATACTAT+AGG - chr1_4:61401455-61401474 Msa0175430:three_prime_UTR 35.0%
CCCTATAGTATAGATTACCT+AGG + chr1_4:61401459-61401478 None:intergenic 35.0%
AGATCCGTTAAAAATCTGCT+TGG - chr1_4:61401531-61401550 Msa0175430:three_prime_UTR 35.0%
GATCCGTTAAAAATCTGCTT+GGG - chr1_4:61401532-61401551 Msa0175430:three_prime_UTR 35.0%
! TGTCCCAAGCAGATTTTTAA+CGG + chr1_4:61401538-61401557 None:intergenic 35.0%
! TTGTTTGCTGAATCAATGTC+GGG - chr1_4:61401704-61401723 Msa0175430:CDS 35.0%
! TCTAGTTTCTCATAAGATCC+AGG + chr1_4:61402016-61402035 None:intergenic 35.0%
CAGAAAATTCCACTCTATCT+TGG + chr1_4:61402089-61402108 None:intergenic 35.0%
TGTTATGCTGCTGTTAAGTA+TGG - chr1_4:61402138-61402157 Msa0175430:intron 35.0%
GTTATGCTGCTGTTAAGTAT+GGG - chr1_4:61402139-61402158 Msa0175430:intron 35.0%
TGTCTGGATTTCAAAATCGT+AGG - chr1_4:61402325-61402344 Msa0175430:intron 35.0%
!!! TTAAGGGTTTTTTGCATGTC+TGG - chr1_4:61402363-61402382 Msa0175430:intron 35.0%
! TTTTGCATGTCTGGATTATC+CGG - chr1_4:61402372-61402391 Msa0175430:intron 35.0%
AGGAACTGTGATACCATATT+AGG - chr1_4:61402433-61402452 Msa0175430:intron 35.0%
!!! CACTTTTTTAACACAGGACT+TGG - chr1_4:61402539-61402558 Msa0175430:intron 35.0%
ATATATATCAACTGAGCCCT+GGG + chr1_4:61402630-61402649 None:intergenic 35.0%
!! GCCTTTTGATTGTAGCAAAA+AGG - chr1_4:61402736-61402755 Msa0175430:intron 35.0%
! GCCTTTTTGCTACAATCAAA+AGG + chr1_4:61402740-61402759 None:intergenic 35.0%
AATATGATTCTTCTCGGACA+TGG - chr1_4:61402792-61402811 Msa0175430:intron 35.0%
ATATGATTCTTCTCGGACAT+GGG - chr1_4:61402793-61402812 Msa0175430:intron 35.0%
AAGATTCTCTTGAAACCTTG+TGG + chr1_4:61402848-61402867 None:intergenic 35.0%
ACAAGGTTTCAAGAGAATCT+TGG - chr1_4:61402847-61402866 Msa0175430:intron 35.0%
!!! GTTCTCAGTTTTTTACCTGT+AGG + chr1_4:61402917-61402936 None:intergenic 35.0%
TGGTGTCTTGCATAATCTTT+GGG + chr1_4:61403018-61403037 None:intergenic 35.0%
ATGGTGTCTTGCATAATCTT+TGG + chr1_4:61403019-61403038 None:intergenic 35.0%
! TTGCTCAATAAATTCTGGGA+TGG + chr1_4:61403038-61403057 None:intergenic 35.0%
GAGCCTGCTAATATATGTTT+AGG + chr1_4:61403261-61403280 None:intergenic 35.0%
! TCTCCAATATAGTTTGGGAC+GGG - chr1_4:61401358-61401377 Msa0175430:three_prime_UTR 40.0%
! ATTACCTAGGCATTGCAACT+GGG + chr1_4:61401446-61401465 None:intergenic 40.0%
TTTCTTTCTCTCTTGGTAGG+TGG + chr1_4:61401612-61401631 None:intergenic 40.0%
! CTGAGACAGTGTTTAGAGTT+CGG + chr1_4:61401666-61401685 None:intergenic 40.0%
! GCTAGAAGAAGATGGAGTTT+TGG + chr1_4:61401732-61401751 None:intergenic 40.0%
AACTCCATCTTCTTCTAGCA+AGG - chr1_4:61401733-61401752 Msa0175430:CDS 40.0%
AGTACCTTGCTAGAAGAAGA+TGG + chr1_4:61401740-61401759 None:intergenic 40.0%
TCAATTTGATTCCGTACCCT+AGG - chr1_4:61401950-61401969 Msa0175430:CDS 40.0%
AGACAAATCAAAGGGCTTTG+CGG + chr1_4:61402310-61402329 None:intergenic 40.0%
GATTATCCGGACAAATCAGA+GGG - chr1_4:61402385-61402404 Msa0175430:intron 40.0%
AGTCTAACTCATCCCAAAAC+CGG - chr1_4:61402467-61402486 Msa0175430:intron 40.0%
!! ACACCATATAAGCCGGTTTT+GGG + chr1_4:61402482-61402501 None:intergenic 40.0%
!! TACACCATATAAGCCGGTTT+TGG + chr1_4:61402483-61402502 None:intergenic 40.0%
ACACTCTACACCATATAAGC+CGG + chr1_4:61402489-61402508 None:intergenic 40.0%
CATATATATCAACTGAGCCC+TGG + chr1_4:61402631-61402650 None:intergenic 40.0%
GAGAGTGATTGATACACAAG+AGG - chr1_4:61402679-61402698 Msa0175430:intron 40.0%
TGATACACAAGAGGAGTTTG+AGG - chr1_4:61402688-61402707 Msa0175430:intron 40.0%
TGCTACAATCAAAAGGCTCT+CGG + chr1_4:61402733-61402752 None:intergenic 40.0%
!! TGTGGAGTCTTTGGAATGTT+AGG + chr1_4:61402830-61402849 None:intergenic 40.0%
AACATTCCAAAGACTCCACA+AGG - chr1_4:61402830-61402849 Msa0175430:intron 40.0%
TTGAAACCTTGTGGAGTCTT+TGG + chr1_4:61402839-61402858 None:intergenic 40.0%
!! GAGAATCTTGGTGCTTAGAA+AGG - chr1_4:61402859-61402878 Msa0175430:intron 40.0%
TCTTACTACATCACACCTAC+AGG - chr1_4:61402899-61402918 Msa0175430:intron 40.0%
ATATGCTGCTATCTCATTGC+GGG + chr1_4:61402939-61402958 None:intergenic 40.0%
GATATGCTGCTATCTCATTG+CGG + chr1_4:61402940-61402959 None:intergenic 40.0%
GGTGTCTTGCATAATCTTTG+GGG + chr1_4:61403017-61403036 None:intergenic 40.0%
GACTTGAGGCAAATTGATTG+AGG + chr1_4:61403333-61403352 None:intergenic 40.0%
! TCTCCAATATAGTTTGGGAC+GGG - chr1_4:61401358-61401377 Msa0175430:three_prime_UTR 40.0%
! ATTACCTAGGCATTGCAACT+GGG + chr1_4:61401446-61401465 None:intergenic 40.0%
TTTCTTTCTCTCTTGGTAGG+TGG + chr1_4:61401612-61401631 None:intergenic 40.0%
! CTGAGACAGTGTTTAGAGTT+CGG + chr1_4:61401666-61401685 None:intergenic 40.0%
! GCTAGAAGAAGATGGAGTTT+TGG + chr1_4:61401732-61401751 None:intergenic 40.0%
AACTCCATCTTCTTCTAGCA+AGG - chr1_4:61401733-61401752 Msa0175430:CDS 40.0%
AGTACCTTGCTAGAAGAAGA+TGG + chr1_4:61401740-61401759 None:intergenic 40.0%
TCAATTTGATTCCGTACCCT+AGG - chr1_4:61401950-61401969 Msa0175430:CDS 40.0%
AGACAAATCAAAGGGCTTTG+CGG + chr1_4:61402310-61402329 None:intergenic 40.0%
GATTATCCGGACAAATCAGA+GGG - chr1_4:61402385-61402404 Msa0175430:intron 40.0%
AGTCTAACTCATCCCAAAAC+CGG - chr1_4:61402467-61402486 Msa0175430:intron 40.0%
!! ACACCATATAAGCCGGTTTT+GGG + chr1_4:61402482-61402501 None:intergenic 40.0%
!! TACACCATATAAGCCGGTTT+TGG + chr1_4:61402483-61402502 None:intergenic 40.0%
ACACTCTACACCATATAAGC+CGG + chr1_4:61402489-61402508 None:intergenic 40.0%
CATATATATCAACTGAGCCC+TGG + chr1_4:61402631-61402650 None:intergenic 40.0%
GAGAGTGATTGATACACAAG+AGG - chr1_4:61402679-61402698 Msa0175430:intron 40.0%
TGATACACAAGAGGAGTTTG+AGG - chr1_4:61402688-61402707 Msa0175430:intron 40.0%
TGCTACAATCAAAAGGCTCT+CGG + chr1_4:61402733-61402752 None:intergenic 40.0%
!! TGTGGAGTCTTTGGAATGTT+AGG + chr1_4:61402830-61402849 None:intergenic 40.0%
AACATTCCAAAGACTCCACA+AGG - chr1_4:61402830-61402849 Msa0175430:intron 40.0%
TTGAAACCTTGTGGAGTCTT+TGG + chr1_4:61402839-61402858 None:intergenic 40.0%
!! GAGAATCTTGGTGCTTAGAA+AGG - chr1_4:61402859-61402878 Msa0175430:intron 40.0%
TCTTACTACATCACACCTAC+AGG - chr1_4:61402899-61402918 Msa0175430:intron 40.0%
ATATGCTGCTATCTCATTGC+GGG + chr1_4:61402939-61402958 None:intergenic 40.0%
GATATGCTGCTATCTCATTG+CGG + chr1_4:61402940-61402959 None:intergenic 40.0%
GGTGTCTTGCATAATCTTTG+GGG + chr1_4:61403017-61403036 None:intergenic 40.0%
GACTTGAGGCAAATTGATTG+AGG + chr1_4:61403333-61403352 None:intergenic 40.0%
! CTCCAATATAGTTTGGGACG+GGG - chr1_4:61401359-61401378 Msa0175430:three_prime_UTR 45.0%
! AATATAGTTTGGGACGGGGT+GGG - chr1_4:61401363-61401382 Msa0175430:three_prime_UTR 45.0%
! GATTACCTAGGCATTGCAAC+TGG + chr1_4:61401447-61401466 None:intergenic 45.0%
TAAACAACTGTTCCGTTCGG+TGG - chr1_4:61401632-61401651 Msa0175430:CDS 45.0%
AATCTTACGCACCTAGGGTA+CGG + chr1_4:61401964-61401983 None:intergenic 45.0%
ATGCTGCTGTTAAGTATGGG+TGG - chr1_4:61402142-61402161 Msa0175430:intron 45.0%
!! GCAAAGCCCTTTGATTTGTC+TGG - chr1_4:61402309-61402328 Msa0175430:intron 45.0%
GGATTATCCGGACAAATCAG+AGG - chr1_4:61402384-61402403 Msa0175430:intron 45.0%
! TCAAAGCCCTCTGATTTGTC+CGG + chr1_4:61402394-61402413 None:intergenic 45.0%
! CATCCCAAAACCGGCTTATA+TGG - chr1_4:61402476-61402495 Msa0175430:intron 45.0%
GGGTTTATTGTGACAGAGAC+CGG - chr1_4:61402598-61402617 Msa0175430:intron 45.0%
GCTCTCGGATGATCTTATGA+CGG + chr1_4:61402718-61402737 None:intergenic 45.0%
AAAGATCATCCTCAACCCAG+TGG - chr1_4:61402962-61402981 Msa0175430:intron 45.0%
TGTGTTAGGGACCAATTCAG+TGG - chr1_4:61403193-61403212 Msa0175430:intron 45.0%
! CTCCAATATAGTTTGGGACG+GGG - chr1_4:61401359-61401378 Msa0175430:three_prime_UTR 45.0%
! AATATAGTTTGGGACGGGGT+GGG - chr1_4:61401363-61401382 Msa0175430:three_prime_UTR 45.0%
! GATTACCTAGGCATTGCAAC+TGG + chr1_4:61401447-61401466 None:intergenic 45.0%
TAAACAACTGTTCCGTTCGG+TGG - chr1_4:61401632-61401651 Msa0175430:CDS 45.0%
AATCTTACGCACCTAGGGTA+CGG + chr1_4:61401964-61401983 None:intergenic 45.0%
ATGCTGCTGTTAAGTATGGG+TGG - chr1_4:61402142-61402161 Msa0175430:intron 45.0%
!! GCAAAGCCCTTTGATTTGTC+TGG - chr1_4:61402309-61402328 Msa0175430:intron 45.0%
GGATTATCCGGACAAATCAG+AGG - chr1_4:61402384-61402403 Msa0175430:intron 45.0%
! TCAAAGCCCTCTGATTTGTC+CGG + chr1_4:61402394-61402413 None:intergenic 45.0%
! CATCCCAAAACCGGCTTATA+TGG - chr1_4:61402476-61402495 Msa0175430:intron 45.0%
GGGTTTATTGTGACAGAGAC+CGG - chr1_4:61402598-61402617 Msa0175430:intron 45.0%
GCTCTCGGATGATCTTATGA+CGG + chr1_4:61402718-61402737 None:intergenic 45.0%
AAAGATCATCCTCAACCCAG+TGG - chr1_4:61402962-61402981 Msa0175430:intron 45.0%
TGTGTTAGGGACCAATTCAG+TGG - chr1_4:61403193-61403212 Msa0175430:intron 45.0%
CACCCCGTCCCAAACTATAT+TGG + chr1_4:61401364-61401383 None:intergenic 50.0%
! CAATATAGTTTGGGACGGGG+TGG - chr1_4:61401362-61401381 Msa0175430:three_prime_UTR 50.0%
! GGTGGTGGCGTTTATAAGAG+AGG + chr1_4:61401594-61401613 None:intergenic 50.0%
CTTTCTCTCTTGGTAGGTGG+TGG + chr1_4:61401609-61401628 None:intergenic 50.0%
TCGGAGAAGATACCACCGAA+CGG + chr1_4:61401647-61401666 None:intergenic 50.0%
!! TCAGAGGGCTTTGAAAAGCG+CGG - chr1_4:61402400-61402419 Msa0175430:intron 50.0%
CACCCCGTCCCAAACTATAT+TGG + chr1_4:61401364-61401383 None:intergenic 50.0%
! CAATATAGTTTGGGACGGGG+TGG - chr1_4:61401362-61401381 Msa0175430:three_prime_UTR 50.0%
! GGTGGTGGCGTTTATAAGAG+AGG + chr1_4:61401594-61401613 None:intergenic 50.0%
CTTTCTCTCTTGGTAGGTGG+TGG + chr1_4:61401609-61401628 None:intergenic 50.0%
TCGGAGAAGATACCACCGAA+CGG + chr1_4:61401647-61401666 None:intergenic 50.0%
!! TCAGAGGGCTTTGAAAAGCG+CGG - chr1_4:61402400-61402419 Msa0175430:intron 50.0%
ATGCACAACCCGCCCTCAAT+GGG + chr1_4:61401328-61401347 None:intergenic 55.0%
AATGCACAACCCGCCCTCAA+TGG + chr1_4:61401329-61401348 None:intergenic 55.0%
! ACCTAGGCATTGCAACTGGG+CGG + chr1_4:61401443-61401462 None:intergenic 55.0%
TCAAAGGGCTTTGCGGAGCA+CGG + chr1_4:61402303-61402322 None:intergenic 55.0%
!! CAGAGGGCTTTGAAAAGCGC+GGG - chr1_4:61402401-61402420 Msa0175430:intron 55.0%
!! GCTTTGAAAAGCGCGGGAGT+TGG - chr1_4:61402407-61402426 Msa0175430:intron 55.0%
! AAAAGCGCGGGAGTTGGAAG+AGG - chr1_4:61402413-61402432 Msa0175430:intron 55.0%
GCAGATACACCACTGGGTTG+AGG + chr1_4:61402974-61402993 None:intergenic 55.0%
ACCCAGTGGTGTATCTGCTG+CGG - chr1_4:61402976-61402995 Msa0175430:intron 55.0%
TCCGCAGCAGATACACCACT+GGG + chr1_4:61402980-61402999 None:intergenic 55.0%
ATCCGCAGCAGATACACCAC+TGG + chr1_4:61402981-61403000 None:intergenic 55.0%
ATGCACAACCCGCCCTCAAT+GGG + chr1_4:61401328-61401347 None:intergenic 55.0%
AATGCACAACCCGCCCTCAA+TGG + chr1_4:61401329-61401348 None:intergenic 55.0%
! ACCTAGGCATTGCAACTGGG+CGG + chr1_4:61401443-61401462 None:intergenic 55.0%
TCAAAGGGCTTTGCGGAGCA+CGG + chr1_4:61402303-61402322 None:intergenic 55.0%
!! CAGAGGGCTTTGAAAAGCGC+GGG - chr1_4:61402401-61402420 Msa0175430:intron 55.0%
!! GCTTTGAAAAGCGCGGGAGT+TGG - chr1_4:61402407-61402426 Msa0175430:intron 55.0%
! AAAAGCGCGGGAGTTGGAAG+AGG - chr1_4:61402413-61402432 Msa0175430:intron 55.0%
GCAGATACACCACTGGGTTG+AGG + chr1_4:61402974-61402993 None:intergenic 55.0%
ACCCAGTGGTGTATCTGCTG+CGG - chr1_4:61402976-61402995 Msa0175430:intron 55.0%
TCCGCAGCAGATACACCACT+GGG + chr1_4:61402980-61402999 None:intergenic 55.0%
ATCCGCAGCAGATACACCAC+TGG + chr1_4:61402981-61403000 None:intergenic 55.0%
CGGAAGATCCGCCCCATTGA+GGG - chr1_4:61401313-61401332 Msa0175430:three_prime_UTR 60.0%
AAGATCCGCCCCATTGAGGG+CGG - chr1_4:61401316-61401335 Msa0175430:three_prime_UTR 60.0%
TGCACAACCCGCCCTCAATG+GGG + chr1_4:61401327-61401346 None:intergenic 60.0%
TGGGTGCATGGAAGCGGAAG+CGG - chr1_4:61401382-61401401 Msa0175430:three_prime_UTR 60.0%
CATGGAAGCGGAAGCGGAAG+CGG - chr1_4:61401388-61401407 Msa0175430:three_prime_UTR 60.0%
ATGGAAGCGGAAGCGGAAGC+GGG - chr1_4:61401389-61401408 Msa0175430:three_prime_UTR 60.0%
! CCTAGGCATTGCAACTGGGC+GGG + chr1_4:61401442-61401461 None:intergenic 60.0%
CGGAAGATCCGCCCCATTGA+GGG - chr1_4:61401313-61401332 Msa0175430:three_prime_UTR 60.0%
AAGATCCGCCCCATTGAGGG+CGG - chr1_4:61401316-61401335 Msa0175430:three_prime_UTR 60.0%
TGCACAACCCGCCCTCAATG+GGG + chr1_4:61401327-61401346 None:intergenic 60.0%
TGGGTGCATGGAAGCGGAAG+CGG - chr1_4:61401382-61401401 Msa0175430:three_prime_UTR 60.0%
CATGGAAGCGGAAGCGGAAG+CGG - chr1_4:61401388-61401407 Msa0175430:three_prime_UTR 60.0%
ATGGAAGCGGAAGCGGAAGC+GGG - chr1_4:61401389-61401408 Msa0175430:three_prime_UTR 60.0%
! CCTAGGCATTGCAACTGGGC+GGG + chr1_4:61401442-61401461 None:intergenic 60.0%
GCGGAAGATCCGCCCCATTG+AGG - chr1_4:61401312-61401331 Msa0175430:three_prime_UTR 65.0%
AGATCCGCCCCATTGAGGGC+GGG - chr1_4:61401317-61401336 Msa0175430:three_prime_UTR 65.0%
ACAACCCGCCCTCAATGGGG+CGG + chr1_4:61401324-61401343 None:intergenic 65.0%
! TTTGGGACGGGGTGGGTGCA+TGG - chr1_4:61401370-61401389 Msa0175430:three_prime_UTR 65.0%
ACGGGGTGGGTGCATGGAAG+CGG - chr1_4:61401376-61401395 Msa0175430:three_prime_UTR 65.0%
AGCGGAAGCGGAAGCGGGAA+CGG - chr1_4:61401394-61401413 Msa0175430:three_prime_UTR 65.0%
ATTGCAACTGGGCGGGTCGG+AGG + chr1_4:61401435-61401454 None:intergenic 65.0%
GGCATTGCAACTGGGCGGGT+CGG + chr1_4:61401438-61401457 None:intergenic 65.0%
CCCGCCCAGTTGCAATGCCT+AGG - chr1_4:61401439-61401458 Msa0175430:three_prime_UTR 65.0%
GCTTTGCGGAGCACGGAGAC+CGG + chr1_4:61402296-61402315 None:intergenic 65.0%
ACAGAGACCGGCGATGACCC+AGG - chr1_4:61402610-61402629 Msa0175430:intron 65.0%
CAGAGACCGGCGATGACCCA+GGG - chr1_4:61402611-61402630 Msa0175430:intron 65.0%
ACTGAGCCCTGGGTCATCGC+CGG + chr1_4:61402620-61402639 None:intergenic 65.0%
GCGGAAGATCCGCCCCATTG+AGG - chr1_4:61401312-61401331 Msa0175430:three_prime_UTR 65.0%
AGATCCGCCCCATTGAGGGC+GGG - chr1_4:61401317-61401336 Msa0175430:three_prime_UTR 65.0%
ACAACCCGCCCTCAATGGGG+CGG + chr1_4:61401324-61401343 None:intergenic 65.0%
! TTTGGGACGGGGTGGGTGCA+TGG - chr1_4:61401370-61401389 Msa0175430:three_prime_UTR 65.0%
ACGGGGTGGGTGCATGGAAG+CGG - chr1_4:61401376-61401395 Msa0175430:three_prime_UTR 65.0%
AGCGGAAGCGGAAGCGGGAA+CGG - chr1_4:61401394-61401413 Msa0175430:three_prime_UTR 65.0%
ATTGCAACTGGGCGGGTCGG+AGG + chr1_4:61401435-61401454 None:intergenic 65.0%
GGCATTGCAACTGGGCGGGT+CGG + chr1_4:61401438-61401457 None:intergenic 65.0%
CCCGCCCAGTTGCAATGCCT+AGG - chr1_4:61401439-61401458 Msa0175430:three_prime_UTR 65.0%
GCTTTGCGGAGCACGGAGAC+CGG + chr1_4:61402296-61402315 None:intergenic 65.0%
ACAGAGACCGGCGATGACCC+AGG - chr1_4:61402610-61402629 Msa0175430:intron 65.0%
CAGAGACCGGCGATGACCCA+GGG - chr1_4:61402611-61402630 Msa0175430:intron 65.0%
ACTGAGCCCTGGGTCATCGC+CGG + chr1_4:61402620-61402639 None:intergenic 65.0%
CAACTGGGCGGGTCGGAGGC+GGG + chr1_4:61401431-61401450 None:intergenic 75.0%
GCAACTGGGCGGGTCGGAGG+CGG + chr1_4:61401432-61401451 None:intergenic 75.0%
CAACTGGGCGGGTCGGAGGC+GGG + chr1_4:61401431-61401450 None:intergenic 75.0%
GCAACTGGGCGGGTCGGAGG+CGG + chr1_4:61401432-61401451 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 61401299 61403439 61401299 ID=Msa0175430;Name=Msa0175430
chr1_4 mRNA 61401299 61403439 61401299 ID=Msa0175430-mRNA-1;Parent=Msa0175430;Name=Msa0175430-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0.33|0.66|1|1|3|331|226
chr1_4 exon 61401299 61402124 61401299 ID=Msa0175430-mRNA-1:exon:19658;Parent=Msa0175430-mRNA-1
chr1_4 exon 61402984 61403052 61402984 ID=Msa0175430-mRNA-1:exon:19657;Parent=Msa0175430-mRNA-1
chr1_4 exon 61403323 61403439 61403323 ID=Msa0175430-mRNA-1:exon:19656;Parent=Msa0175430-mRNA-1
chr1_4 CDS 61403323 61403439 61403323 ID=Msa0175430-mRNA-1:cds;Parent=Msa0175430-mRNA-1
chr1_4 CDS 61402984 61403052 61402984 ID=Msa0175430-mRNA-1:cds;Parent=Msa0175430-mRNA-1
chr1_4 CDS 61401630 61402124 61401630 ID=Msa0175430-mRNA-1:cds;Parent=Msa0175430-mRNA-1
chr1_4 three_prime_UTR 61401299 61401629 61401299 ID=Msa0175430-mRNA-1:three_prime_utr;Parent=Msa0175430-mRNA-1
Gene Sequence

>Msa0175430

ATGTGGGGTGGTGGCGGAAGATCCGCCCCATTGAGGGCGGGTTGTGCATTCAATTTTTATCTCCAATATAGTTTGGGACGGGGTGGGTGCATGGAAGCGGAAGCGGAAGCGGGAACGTCAGAGCGTGAGAGAAATTTGTTTGCTGAATCAATGTCGGGCTCCAAAACTCCATCTTCTTCTAGCAAGAGACCGGCGATGACCCAGGGCTCAGTTGATATATATGCTGCACAATGCAAACTTTGCATGAAATGGAGAGTGATTGATACACAAGAGGAGTTTGAGGAGATCCGTCATAAGATCATCCGAGAGCCTTTTGATTGTAGCAAAAAGGCTAATCGTAGCTGTGATGATCCTGCTGATATTGAATATGATTCTTCTCGGACATGGGTCATTGACAAGCCTAACATTCCAAAGACTCCACAAGGTTTCAAGAGAATCTTGGTGCTTAGAAAGGATTACTCTAAGTTGGACTCTTACTACATCACACCTACAGGTAAAAAACTGAGAACCCGCAATGAGATAGCAGCATATCTTAAAGATCATCCTCAACCCAGTGGTGTATCTGCTGCGGATTTTGATTTTTCATCCCCAAAGATTATGCAAGACACCATCCCAGAATTTATTGAGCAACAGAAGGATTCTGCAAACAAAAAAGCTAAGATATCTAAAGATGAAGTTTGA
Protein sequence

>Msa0175430

MWGGGGRSAPLRAGCAFNFYLQYSLGRGGCMEAEAEAGTSERERNLFAESMSGSKTPSSSSKRPAMTQGSVDIYAAQCKLCMKWRVIDTQEEFEEIRHKIIREPFDCSKKANRSCDDPADIEYDSSRTWVIDKPNIPKTPQGFKRILVLRKDYSKLDSYYITPTGKKLRTRNEIAAYLKDHPQPSGVSAADFDFSSPKIMQDTIPEFIEQQKDSANKKAKISKDEV*