AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0034410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034410 MtrunA17_Chr1g0196481 85.227 176 3 1 51 226 1 153 6.82e-105 299
Msa0034410 MtrunA17_Chr6g0470951 85.093 161 22 1 66 226 1 159 1.37e-98 283
Msa0034410 MtrunA17_Chr6g0460561 84.138 145 23 0 82 226 1 145 1.34e-84 248
Msa0034410 MtrunA17_Chr6g0472721 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0034410 MtrunA17_Chr6g0472711 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0034410 MtrunA17_Chr6g0472741 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0034410 MtrunA17_Chr6g0472631 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0034410 MtrunA17_Chr6g0472671 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0034410 MtrunA17_Chr6g0472701 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0034410 MtrunA17_Chr6g0470941 83.448 145 24 0 82 226 1 145 3.22e-84 246
Msa0034410 MtrunA17_Chr6g0472691 82.069 145 26 0 82 226 1 145 6.57e-84 246
Msa0034410 MtrunA17_Chr6g0472731 81.379 145 27 0 82 226 1 145 1.04e-82 243
Msa0034410 MtrunA17_Chr6g0472681 81.379 145 27 0 82 226 1 145 1.07e-82 243
Msa0034410 MtrunA17_Chr6g0460591 82.645 121 21 0 91 211 8 128 1.40e-70 211
Msa0034410 MtrunA17_Chr6g0472651 84.259 108 17 0 82 189 1 108 6.36e-62 189
Msa0034410 MtrunA17_Chr6g0472661 84.259 108 17 0 82 189 1 108 6.36e-62 189
Msa0034410 MtrunA17_Chr6g0460571 85.437 103 15 0 117 219 4 106 9.67e-61 186
Msa0034410 MtrunA17_Chr6g0472621 81.731 104 19 0 82 185 1 104 4.98e-56 174
Msa0034410 MtrunA17_Chr6g0460581 78.723 94 20 0 118 211 3 96 9.42e-51 160
Msa0034410 MtrunA17_Chr6g0472641 80.263 76 15 0 82 157 1 76 1.66e-36 123
Msa0034410 MtrunA17_Chr6g0488751 44.366 142 71 3 70 203 95 236 1.65e-34 125
Msa0034410 MtrunA17_Chr3g0091711 37.079 178 101 4 34 203 28 202 1.86e-32 117
Msa0034410 MtrunA17_Chr3g0091691 37.079 178 101 4 34 203 28 202 2.48e-32 117
Msa0034410 MtrunA17_Chr3g0092081 41.135 141 75 3 71 203 106 246 3.63e-32 119
Msa0034410 MtrunA17_Chr3g0092101 39.716 141 77 3 71 203 103 243 1.87e-29 111
Msa0034410 MtrunA17_Chr3g0091651 35.955 89 53 2 120 204 3 91 1.47e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034410 AT3G63030.1 64.444 135 48 0 71 205 25 159 4.44e-65 200
Msa0034410 AT4G22745.1 56.835 139 60 0 70 208 51 189 4.28e-58 182
Msa0034410 AT5G35330.3 40.426 141 76 3 70 202 55 195 6.58e-31 115
Msa0034410 AT5G35330.1 40.426 141 76 3 70 202 55 195 6.58e-31 115
Msa0034410 AT5G35330.4 40.426 141 76 3 70 202 55 195 6.58e-31 115
Msa0034410 AT5G35330.2 40.426 141 76 3 70 202 55 195 6.58e-31 115
Msa0034410 AT4G00416.1 36.641 131 73 4 71 196 9 134 2.67e-24 95.1
Msa0034410 AT5G35338.2 32.836 134 77 5 76 202 2 129 7.38e-18 77.8

Find 75 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAATAGAAAATATATTT+TGG 0.215768 1_1:+62384564 None:intergenic
TTGAAACCTTGTGGAGTCTT+TGG 0.225609 1_1:+62385032 None:intergenic
TTCTGTTGCTCAATAAATTC+TGG 0.227479 1_1:+62384828 None:intergenic
TGGTGTCTTGCATAATCTTT+GGG 0.244821 1_1:+62384853 None:intergenic
ATGGTGTCTTGCATAATCTT+TGG 0.279956 1_1:+62384852 None:intergenic
TTATTTCTAGATATTGTGTT+AGG 0.290857 1_1:-62384689 Msa0034410:three_prime_UTR
TGTGGAGTCTTTGGAATGTT+AGG 0.313454 1_1:+62385041 None:intergenic
GAGCCTGCTAATATATGTTT+AGG 0.323867 1_1:+62384610 None:intergenic
GTTGTTGTTGATGCTAATTA+TGG 0.357109 1_1:-62384731 Msa0034410:three_prime_UTR
CACCCCGTTCCAAACTATAT+TGG 0.362174 1_1:+62386567 None:intergenic
ATGCACAACCCGCCCTCAAT+GGG 0.365477 1_1:+62386603 None:intergenic
TGGGTGCATGGAAGCGGAAG+CGG 0.367780 1_1:-62386546 Msa0034410:CDS
AATGCAAACTTTGCATGAAA+TGG 0.372986 1_1:-62385211 Msa0034410:CDS
TCTCCAATATAGTTTGGAAC+GGG 0.374550 1_1:-62386570 Msa0034410:CDS
GCTAGAAGAAGATGGAGTTT+TGG 0.380480 1_1:+62386199 None:intergenic
TTGTTTCAATACCACTGAAT+TGG 0.402047 1_1:+62384664 None:intergenic
TAGAAAGGATTACTCTAAGT+TGG 0.402694 1_1:-62384994 Msa0034410:CDS
ATATGCTGCTATCTCATTGC+GGG 0.412618 1_1:+62384932 None:intergenic
CGGAAGATCCGCCCCATTGA+GGG 0.417585 1_1:-62386615 Msa0034410:CDS
TCTGTTGCTCAATAAATTCT+GGG 0.422405 1_1:+62384829 None:intergenic
ACAAGGTTTCAAGAGAATCT+TGG 0.424100 1_1:-62385021 Msa0034410:CDS
CATGGAAGCGGAAGCGGGAG+CGG 0.425677 1_1:-62386540 Msa0034410:CDS
AATGCACAACCCGCCCTCAA+TGG 0.433117 1_1:+62386602 None:intergenic
TGCTACAATCAAAAGGCTCT+CGG 0.434619 1_1:+62385138 None:intergenic
ATATTGAATATGATTCTTCT+CGG 0.438557 1_1:-62385082 Msa0034410:CDS
GGGTGCATGGAAGCGGAAGC+GGG 0.443855 1_1:-62386545 Msa0034410:CDS
GAGAATCTTGGTGCTTAGAA+AGG 0.448776 1_1:-62385009 Msa0034410:CDS
TTGTTTGCTGAATCAATGTC+GGG 0.454590 1_1:-62386224 Msa0034410:CDS
ACGGGGTGGGTGCATGGAAG+CGG 0.459441 1_1:-62386552 Msa0034410:CDS
TTTGGAACGGGGTGGGTGCA+TGG 0.475938 1_1:-62386558 Msa0034410:CDS
AATATGATTCTTCTCGGACA+TGG 0.476290 1_1:-62385076 Msa0034410:CDS
GCGGAAGATCCGCCCCATTG+AGG 0.480775 1_1:-62386616 Msa0034410:CDS
AGCGGAAGCGGGAGCGGGAA+CGG 0.483547 1_1:-62386534 Msa0034410:intron
TGATACACAAGAGGAGTTTG+AGG 0.485320 1_1:-62385180 Msa0034410:CDS
ATGGAAGCGGAAGCGGGAGC+GGG 0.498889 1_1:-62386539 Msa0034410:CDS
TATTTCTAGATATTGTGTTA+GGG 0.498956 1_1:-62384688 Msa0034410:three_prime_UTR
TTTCACATGTGGGGTGGTGG+CGG 0.511250 1_1:-62386635 None:intergenic
TAACCTAAACATATATTAGC+AGG 0.512370 1_1:-62384613 Msa0034410:three_prime_UTR
ATCTCCAATATAGTTTGGAA+CGG 0.512818 1_1:-62386571 Msa0034410:CDS
TCTTACTACATCACACCTAC+AGG 0.516283 1_1:-62384969 Msa0034410:CDS
CATATATATCAACTGAGCCC+TGG 0.521418 1_1:+62385240 None:intergenic
ATATGATTCTTCTCGGACAT+GGG 0.527218 1_1:-62385075 Msa0034410:CDS
TTGTTGATGCTAATTATGGT+TGG 0.527749 1_1:-62384727 Msa0034410:three_prime_UTR
GACTTGAGGCAAATTGATTG+AGG 0.537892 1_1:+62384538 None:intergenic
ACTGAGCCCTGGGTCATCGC+CGG 0.538613 1_1:+62385251 None:intergenic
TTTGTTTGCTGAATCAATGT+CGG 0.540179 1_1:-62386225 Msa0034410:CDS
AGAATTTATTGAGCAACAGA+AGG 0.543104 1_1:-62384826 Msa0034410:CDS
ATATATATCAACTGAGCCCT+GGG 0.551958 1_1:+62385241 None:intergenic
GAATCATATTCAATATCAGC+AGG 0.552211 1_1:+62385089 None:intergenic
GCAGATACACCACTGGGTTG+AGG 0.552234 1_1:+62384897 None:intergenic
AAGATCCGCCCCATTGAGGG+CGG 0.556329 1_1:-62386612 Msa0034410:CDS
AATATAGTTTGGAACGGGGT+GGG 0.557685 1_1:-62386565 Msa0034410:CDS
AACTCCATCTTCTTCTAGCA+AGG 0.558032 1_1:-62386195 Msa0034410:intron
AAGATTCTCTTGAAACCTTG+TGG 0.558153 1_1:+62385023 None:intergenic
AGTACCTTGCTAGAAGAAGA+TGG 0.558912 1_1:+62386191 None:intergenic
ACAGAGACCGGCGATGACCC+AGG 0.559040 1_1:-62385258 Msa0034410:intron
AATATATGTTTAGGTTACAA+TGG 0.565398 1_1:+62384619 None:intergenic
AGATCCGCCCCATTGAGGGC+GGG 0.578215 1_1:-62386611 Msa0034410:CDS
CAGAGACCGGCGATGACCCA+GGG 0.581876 1_1:-62385257 Msa0034410:CDS
ATCCGCAGCAGATACACCAC+TGG 0.582537 1_1:+62384890 None:intergenic
CAATATAGTTTGGAACGGGG+TGG 0.611318 1_1:-62386566 Msa0034410:CDS
ACCCAGTGGTGTATCTGCTG+CGG 0.611469 1_1:-62384892 Msa0034410:CDS
GATATGCTGCTATCTCATTG+CGG 0.625471 1_1:+62384931 None:intergenic
CTCCAATATAGTTTGGAACG+GGG 0.629660 1_1:-62386569 Msa0034410:CDS
TTGCTCAATAAATTCTGGGA+TGG 0.634957 1_1:+62384833 None:intergenic
AACATTCCAAAGACTCCACA+AGG 0.636979 1_1:-62385038 Msa0034410:CDS
GAGAGTGATTGATACACAAG+AGG 0.640381 1_1:-62385189 Msa0034410:CDS
ACAACCCGCCCTCAATGGGG+CGG 0.643881 1_1:+62386607 None:intergenic
TGTGTTAGGGACCAATTCAG+TGG 0.646630 1_1:-62384675 Msa0034410:three_prime_UTR
GTTTGAGAAATATCATCACA+AGG 0.662203 1_1:-62384765 Msa0034410:exon
TGCACAACCCGCCCTCAATG+GGG 0.667806 1_1:+62386604 None:intergenic
GGTGTCTTGCATAATCTTTG+GGG 0.668330 1_1:+62384854 None:intergenic
GCTCTCGGATGATCTTATGA+CGG 0.668353 1_1:+62385153 None:intergenic
TCCGCAGCAGATACACCACT+GGG 0.695152 1_1:+62384891 None:intergenic
AAAGATCATCCTCAACCCAG+TGG 0.719856 1_1:-62384906 Msa0034410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGAATAGAAAATATATTTT+GGG + chr1_1:62386515-62386534 None:intergenic 10.0%
!!! ATAGAATAGAAAATATATTT+TGG + chr1_1:62386516-62386535 None:intergenic 10.0%
!!! TAGAATAGAAAATATATTTT+GGG + chr1_1:62386515-62386534 None:intergenic 10.0%
!!! ATAGAATAGAAAATATATTT+TGG + chr1_1:62386516-62386535 None:intergenic 10.0%
!!! AACAAATTTAATTTTAGTTC+TGG - chr1_1:62386431-62386450 Msa0034410:intron 15.0%
!!! AACAAATTTAATTTTAGTTC+TGG - chr1_1:62386431-62386450 Msa0034410:intron 15.0%
!!! TTTTTATCTCCAATATAGTT+TGG - chr1_1:62384501-62384520 Msa0034410:three_prime_UTR 20.0%
!!! TAGGCCATTTTTTTTATTTT+CGG + chr1_1:62384638-62384657 None:intergenic 20.0%
!!! TCGATTCCTATTTTTTTTTT+AGG - chr1_1:62384933-62384952 Msa0034410:CDS 20.0%
!!! CGATTCCTATTTTTTTTTTA+GGG - chr1_1:62384934-62384953 Msa0034410:CDS 20.0%
!! CAAAACCCTAAAAAAAAAAT+AGG + chr1_1:62384942-62384961 None:intergenic 20.0%
!! GAAAAATAGTTGAAAACTAA+GGG + chr1_1:62384969-62384988 None:intergenic 20.0%
!! AGAAAAATAGTTGAAAACTA+AGG + chr1_1:62384970-62384989 None:intergenic 20.0%
!!! TTACTTGTTAATTGAATTGA+AGG - chr1_1:62385049-62385068 Msa0034410:CDS 20.0%
!!! TACTTGTTAATTGAATTGAA+GGG - chr1_1:62385050-62385069 Msa0034410:CDS 20.0%
!!! TGTTAATTTTCTGTTTTGAA+TGG - chr1_1:62385191-62385210 Msa0034410:CDS 20.0%
!!! GTTAATTTTCTGTTTTGAAT+GGG - chr1_1:62385192-62385211 Msa0034410:CDS 20.0%
!!! TTAATTTTCTGTTTTGAATG+GGG - chr1_1:62385193-62385212 Msa0034410:CDS 20.0%
!! TAAATTGTGCACTTATAATT+TGG - chr1_1:62385594-62385613 Msa0034410:intron 20.0%
!! CTCAATATAAAAACCTAATA+TGG + chr1_1:62385658-62385677 None:intergenic 20.0%
!!! ATGGATTATTAAGTCTTTAT+TGG - chr1_1:62385786-62385805 Msa0034410:intron 20.0%
!! TGGATTATTAAGTCTTTATT+GGG - chr1_1:62385787-62385806 Msa0034410:intron 20.0%
!! ATATTGAATATGATTCTTCT+CGG - chr1_1:62385995-62386014 Msa0034410:intron 20.0%
!!! TTATTTCTAGATATTGTGTT+AGG - chr1_1:62386388-62386407 Msa0034410:intron 20.0%
!!! TATTTCTAGATATTGTGTTA+GGG - chr1_1:62386389-62386408 Msa0034410:intron 20.0%
!!! AAATTTAATTTTAGTTCTGG+TGG - chr1_1:62386434-62386453 Msa0034410:intron 20.0%
!!! AATATATGTTTAGGTTACAA+TGG + chr1_1:62386461-62386480 None:intergenic 20.0%
!!! TTTTTATCTCCAATATAGTT+TGG - chr1_1:62384501-62384520 Msa0034410:three_prime_UTR 20.0%
!!! TAGGCCATTTTTTTTATTTT+CGG + chr1_1:62384638-62384657 None:intergenic 20.0%
!!! TCGATTCCTATTTTTTTTTT+AGG - chr1_1:62384933-62384952 Msa0034410:CDS 20.0%
!!! CGATTCCTATTTTTTTTTTA+GGG - chr1_1:62384934-62384953 Msa0034410:CDS 20.0%
!! CAAAACCCTAAAAAAAAAAT+AGG + chr1_1:62384942-62384961 None:intergenic 20.0%
!! GAAAAATAGTTGAAAACTAA+GGG + chr1_1:62384969-62384988 None:intergenic 20.0%
!! AGAAAAATAGTTGAAAACTA+AGG + chr1_1:62384970-62384989 None:intergenic 20.0%
!!! TTACTTGTTAATTGAATTGA+AGG - chr1_1:62385049-62385068 Msa0034410:CDS 20.0%
!!! TACTTGTTAATTGAATTGAA+GGG - chr1_1:62385050-62385069 Msa0034410:CDS 20.0%
!!! TGTTAATTTTCTGTTTTGAA+TGG - chr1_1:62385191-62385210 Msa0034410:CDS 20.0%
!!! GTTAATTTTCTGTTTTGAAT+GGG - chr1_1:62385192-62385211 Msa0034410:CDS 20.0%
!!! TTAATTTTCTGTTTTGAATG+GGG - chr1_1:62385193-62385212 Msa0034410:CDS 20.0%
!! TAAATTGTGCACTTATAATT+TGG - chr1_1:62385594-62385613 Msa0034410:intron 20.0%
!! CTCAATATAAAAACCTAATA+TGG + chr1_1:62385658-62385677 None:intergenic 20.0%
!!! ATGGATTATTAAGTCTTTAT+TGG - chr1_1:62385786-62385805 Msa0034410:intron 20.0%
!! TGGATTATTAAGTCTTTATT+GGG - chr1_1:62385787-62385806 Msa0034410:intron 20.0%
!! ATATTGAATATGATTCTTCT+CGG - chr1_1:62385995-62386014 Msa0034410:intron 20.0%
!!! TTATTTCTAGATATTGTGTT+AGG - chr1_1:62386388-62386407 Msa0034410:intron 20.0%
!!! TATTTCTAGATATTGTGTTA+GGG - chr1_1:62386389-62386408 Msa0034410:intron 20.0%
!!! AAATTTAATTTTAGTTCTGG+TGG - chr1_1:62386434-62386453 Msa0034410:intron 20.0%
!!! AATATATGTTTAGGTTACAA+TGG + chr1_1:62386461-62386480 None:intergenic 20.0%
! AGAGAAATATAACACTCTTT+AGG + chr1_1:62384657-62384676 None:intergenic 25.0%
!! TTGTTTATTTCTTTCTCTCT+TGG + chr1_1:62384768-62384787 None:intergenic 25.0%
!! TCTATTCTTGTTAACTCTTT+TGG - chr1_1:62384993-62385012 Msa0034410:CDS 25.0%
!! CTATTCTTGTTAACTCTTTT+GGG - chr1_1:62384994-62385013 Msa0034410:CDS 25.0%
!!! TGATGTTCTTTTTTCGTTTT+AGG - chr1_1:62385018-62385037 Msa0034410:CDS 25.0%
!!! GATGTTCTTTTTTCGTTTTA+GGG - chr1_1:62385019-62385038 Msa0034410:CDS 25.0%
! AAATCGTAGGAGTAAAAAAA+AGG - chr1_1:62385485-62385504 Msa0034410:intron 25.0%
! AATCGTAGGAGTAAAAAAAA+GGG - chr1_1:62385486-62385505 Msa0034410:intron 25.0%
! GAGTAAAAAAAAGGGTTTAA+GGG - chr1_1:62385494-62385513 Msa0034410:intron 25.0%
! TATAAGTGCACAATTTAACA+TGG + chr1_1:62385591-62385610 None:intergenic 25.0%
!!! TTGGTTTTTTGTCAATAGTA+TGG - chr1_1:62385767-62385786 Msa0034410:intron 25.0%
! TAACCTAAACATATATTAGC+AGG - chr1_1:62386464-62386483 Msa0034410:intron 25.0%
! AGAGAAATATAACACTCTTT+AGG + chr1_1:62384657-62384676 None:intergenic 25.0%
!! TTGTTTATTTCTTTCTCTCT+TGG + chr1_1:62384768-62384787 None:intergenic 25.0%
!! TCTATTCTTGTTAACTCTTT+TGG - chr1_1:62384993-62385012 Msa0034410:CDS 25.0%
!! CTATTCTTGTTAACTCTTTT+GGG - chr1_1:62384994-62385013 Msa0034410:CDS 25.0%
!!! TGATGTTCTTTTTTCGTTTT+AGG - chr1_1:62385018-62385037 Msa0034410:CDS 25.0%
!!! GATGTTCTTTTTTCGTTTTA+GGG - chr1_1:62385019-62385038 Msa0034410:CDS 25.0%
! AAATCGTAGGAGTAAAAAAA+AGG - chr1_1:62385485-62385504 Msa0034410:intron 25.0%
! AATCGTAGGAGTAAAAAAAA+GGG - chr1_1:62385486-62385505 Msa0034410:intron 25.0%
! GAGTAAAAAAAAGGGTTTAA+GGG - chr1_1:62385494-62385513 Msa0034410:intron 25.0%
! TATAAGTGCACAATTTAACA+TGG + chr1_1:62385591-62385610 None:intergenic 25.0%
!!! TTGGTTTTTTGTCAATAGTA+TGG - chr1_1:62385767-62385786 Msa0034410:intron 25.0%
! TAACCTAAACATATATTAGC+AGG - chr1_1:62386464-62386483 Msa0034410:intron 25.0%
ATCTCCAATATAGTTTGGAA+CGG - chr1_1:62384506-62384525 Msa0034410:three_prime_UTR 30.0%
CCTAGGTAATCTATACTATA+GGG - chr1_1:62384605-62384624 Msa0034410:three_prime_UTR 30.0%
CTAGGTAATCTATACTATAG+GGG - chr1_1:62384606-62384625 Msa0034410:three_prime_UTR 30.0%
TAATCTATACTATAGGGGTA+TGG - chr1_1:62384611-62384630 Msa0034410:three_prime_UTR 30.0%
! AATCTATACTATAGGGGTAT+GGG - chr1_1:62384612-62384631 Msa0034410:three_prime_UTR 30.0%
TGGGCCGAAAATAAAAAAAA+TGG - chr1_1:62384631-62384650 Msa0034410:three_prime_UTR 30.0%
! TTATTTCTTTCTCTCTTGGT+AGG + chr1_1:62384764-62384783 None:intergenic 30.0%
AAATAAACAACTGTTCCGTT+CGG - chr1_1:62384778-62384797 Msa0034410:exon 30.0%
! TTTGTTTGCTGAATCAATGT+CGG - chr1_1:62384852-62384871 Msa0034410:CDS 30.0%
AAAAAAATCTTACGCACCTA+GGG + chr1_1:62385119-62385138 None:intergenic 30.0%
AAAAAAAATCTTACGCACCT+AGG + chr1_1:62385120-62385139 None:intergenic 30.0%
!!! GTGCAGATTTTTTTTTATCC+TGG - chr1_1:62385142-62385161 Msa0034410:CDS 30.0%
ATTGTTAAACCAAGATAGAG+TGG - chr1_1:62385224-62385243 Msa0034410:CDS 30.0%
! TGTTATGTTGCTGTTAAGTA+TGG - chr1_1:62385285-62385304 Msa0034410:intron 30.0%
! GTTATGTTGCTGTTAAGTAT+GGG - chr1_1:62385286-62385305 Msa0034410:intron 30.0%
AATATCAGATCTGCAACAAA+AGG - chr1_1:62385314-62385333 Msa0034410:intron 30.0%
! TTGCTAAATTGTTTCTCTTC+CGG - chr1_1:62385421-62385440 Msa0034410:intron 30.0%
TGAAATCCAGACAAATCAAA+GGG + chr1_1:62385465-62385484 None:intergenic 30.0%
TTGAAATCCAGACAAATCAA+AGG + chr1_1:62385466-62385485 None:intergenic 30.0%
GGAGTAAAAAAAAGGGTTTA+AGG - chr1_1:62385493-62385512 Msa0034410:intron 30.0%
ATTGTGCACTTATAATTTGG+TGG - chr1_1:62385597-62385616 Msa0034410:intron 30.0%
ATAGACTGTGATACCATATT+AGG - chr1_1:62385642-62385661 Msa0034410:intron 30.0%
!!! GCTTATCACTTTTTTAACAC+AGG - chr1_1:62385742-62385761 Msa0034410:intron 30.0%
AATGCAAACTTTGCATGAAA+TGG - chr1_1:62385866-62385885 Msa0034410:intron 30.0%
GAATCATATTCAATATCAGC+AGG + chr1_1:62385991-62386010 None:intergenic 30.0%
TAGAAAGGATTACTCTAAGT+TGG - chr1_1:62386083-62386102 Msa0034410:intron 30.0%
TCTGTTGCTCAATAAATTCT+GGG + chr1_1:62386251-62386270 None:intergenic 30.0%
TTCTGTTGCTCAATAAATTC+TGG + chr1_1:62386252-62386271 None:intergenic 30.0%
AGAATTTATTGAGCAACAGA+AGG - chr1_1:62386251-62386270 Msa0034410:intron 30.0%
GTTTGAGAAATATCATCACA+AGG - chr1_1:62386312-62386331 Msa0034410:intron 30.0%
! GTTGTTGTTGATGCTAATTA+TGG - chr1_1:62386346-62386365 Msa0034410:intron 30.0%
TTGTTGATGCTAATTATGGT+TGG - chr1_1:62386350-62386369 Msa0034410:intron 30.0%
TTGTTTCAATACCACTGAAT+TGG + chr1_1:62386416-62386435 None:intergenic 30.0%
TAGAAGAAAAAGAAGACTTG+AGG + chr1_1:62386556-62386575 None:intergenic 30.0%
ATCTCCAATATAGTTTGGAA+CGG - chr1_1:62384506-62384525 Msa0034410:three_prime_UTR 30.0%
CCTAGGTAATCTATACTATA+GGG - chr1_1:62384605-62384624 Msa0034410:three_prime_UTR 30.0%
CTAGGTAATCTATACTATAG+GGG - chr1_1:62384606-62384625 Msa0034410:three_prime_UTR 30.0%
TAATCTATACTATAGGGGTA+TGG - chr1_1:62384611-62384630 Msa0034410:three_prime_UTR 30.0%
! AATCTATACTATAGGGGTAT+GGG - chr1_1:62384612-62384631 Msa0034410:three_prime_UTR 30.0%
TGGGCCGAAAATAAAAAAAA+TGG - chr1_1:62384631-62384650 Msa0034410:three_prime_UTR 30.0%
! TTATTTCTTTCTCTCTTGGT+AGG + chr1_1:62384764-62384783 None:intergenic 30.0%
AAATAAACAACTGTTCCGTT+CGG - chr1_1:62384778-62384797 Msa0034410:exon 30.0%
! TTTGTTTGCTGAATCAATGT+CGG - chr1_1:62384852-62384871 Msa0034410:CDS 30.0%
AAAAAAATCTTACGCACCTA+GGG + chr1_1:62385119-62385138 None:intergenic 30.0%
AAAAAAAATCTTACGCACCT+AGG + chr1_1:62385120-62385139 None:intergenic 30.0%
!!! GTGCAGATTTTTTTTTATCC+TGG - chr1_1:62385142-62385161 Msa0034410:CDS 30.0%
ATTGTTAAACCAAGATAGAG+TGG - chr1_1:62385224-62385243 Msa0034410:CDS 30.0%
! TGTTATGTTGCTGTTAAGTA+TGG - chr1_1:62385285-62385304 Msa0034410:intron 30.0%
! GTTATGTTGCTGTTAAGTAT+GGG - chr1_1:62385286-62385305 Msa0034410:intron 30.0%
AATATCAGATCTGCAACAAA+AGG - chr1_1:62385314-62385333 Msa0034410:intron 30.0%
! TTGCTAAATTGTTTCTCTTC+CGG - chr1_1:62385421-62385440 Msa0034410:intron 30.0%
TGAAATCCAGACAAATCAAA+GGG + chr1_1:62385465-62385484 None:intergenic 30.0%
TTGAAATCCAGACAAATCAA+AGG + chr1_1:62385466-62385485 None:intergenic 30.0%
GGAGTAAAAAAAAGGGTTTA+AGG - chr1_1:62385493-62385512 Msa0034410:intron 30.0%
ATTGTGCACTTATAATTTGG+TGG - chr1_1:62385597-62385616 Msa0034410:intron 30.0%
ATAGACTGTGATACCATATT+AGG - chr1_1:62385642-62385661 Msa0034410:intron 30.0%
!!! GCTTATCACTTTTTTAACAC+AGG - chr1_1:62385742-62385761 Msa0034410:intron 30.0%
AATGCAAACTTTGCATGAAA+TGG - chr1_1:62385866-62385885 Msa0034410:intron 30.0%
GAATCATATTCAATATCAGC+AGG + chr1_1:62385991-62386010 None:intergenic 30.0%
TAGAAAGGATTACTCTAAGT+TGG - chr1_1:62386083-62386102 Msa0034410:intron 30.0%
TCTGTTGCTCAATAAATTCT+GGG + chr1_1:62386251-62386270 None:intergenic 30.0%
TTCTGTTGCTCAATAAATTC+TGG + chr1_1:62386252-62386271 None:intergenic 30.0%
AGAATTTATTGAGCAACAGA+AGG - chr1_1:62386251-62386270 Msa0034410:intron 30.0%
GTTTGAGAAATATCATCACA+AGG - chr1_1:62386312-62386331 Msa0034410:intron 30.0%
! GTTGTTGTTGATGCTAATTA+TGG - chr1_1:62386346-62386365 Msa0034410:intron 30.0%
TTGTTGATGCTAATTATGGT+TGG - chr1_1:62386350-62386369 Msa0034410:intron 30.0%
TTGTTTCAATACCACTGAAT+TGG + chr1_1:62386416-62386435 None:intergenic 30.0%
TAGAAGAAAAAGAAGACTTG+AGG + chr1_1:62386556-62386575 None:intergenic 30.0%
! TCTCCAATATAGTTTGGAAC+GGG - chr1_1:62384507-62384526 Msa0034410:three_prime_UTR 35.0%
GCCTAGGTAATCTATACTAT+AGG - chr1_1:62384604-62384623 Msa0034410:three_prime_UTR 35.0%
CCCTATAGTATAGATTACCT+AGG + chr1_1:62384608-62384627 None:intergenic 35.0%
AGATCCGTTAAAAATCTGCT+TGG - chr1_1:62384680-62384699 Msa0034410:three_prime_UTR 35.0%
GATCCGTTAAAAATCTGCTT+GGG - chr1_1:62384681-62384700 Msa0034410:three_prime_UTR 35.0%
! TGTCCCAAGCAGATTTTTAA+CGG + chr1_1:62384687-62384706 None:intergenic 35.0%
! TTGTTTGCTGAATCAATGTC+GGG - chr1_1:62384853-62384872 Msa0034410:CDS 35.0%
! TCTAGTTTCTCATAAGATCC+AGG + chr1_1:62385163-62385182 None:intergenic 35.0%
CAGAAAATTCCACTCTATCT+TGG + chr1_1:62385236-62385255 None:intergenic 35.0%
TGTCTGGATTTCAAAATCGT+AGG - chr1_1:62385472-62385491 Msa0034410:intron 35.0%
!!! TTAAGGGTTTTTTGCATGTC+TGG - chr1_1:62385510-62385529 Msa0034410:intron 35.0%
! TTTTGCATGTCTGGATTATC+CGG - chr1_1:62385519-62385538 Msa0034410:intron 35.0%
!!! CACTTTTTTAACACAGGACT+TGG - chr1_1:62385748-62385767 Msa0034410:intron 35.0%
ATATATATCAACTGAGCCCT+GGG + chr1_1:62385839-62385858 None:intergenic 35.0%
!! GCCTTTTGATTGTAGCAAAA+AGG - chr1_1:62385945-62385964 Msa0034410:intron 35.0%
! GCCTTTTTGCTACAATCAAA+AGG + chr1_1:62385949-62385968 None:intergenic 35.0%
AATATGATTCTTCTCGGACA+TGG - chr1_1:62386001-62386020 Msa0034410:intron 35.0%
ATATGATTCTTCTCGGACAT+GGG - chr1_1:62386002-62386021 Msa0034410:intron 35.0%
AAGATTCTCTTGAAACCTTG+TGG + chr1_1:62386057-62386076 None:intergenic 35.0%
ACAAGGTTTCAAGAGAATCT+TGG - chr1_1:62386056-62386075 Msa0034410:intron 35.0%
!!! GTTCTCAGTTTTTTACCTGT+AGG + chr1_1:62386126-62386145 None:intergenic 35.0%
TGGTGTCTTGCATAATCTTT+GGG + chr1_1:62386227-62386246 None:intergenic 35.0%
ATGGTGTCTTGCATAATCTT+TGG + chr1_1:62386228-62386247 None:intergenic 35.0%
! TTGCTCAATAAATTCTGGGA+TGG + chr1_1:62386247-62386266 None:intergenic 35.0%
GAGCCTGCTAATATATGTTT+AGG + chr1_1:62386470-62386489 None:intergenic 35.0%
! TCTCCAATATAGTTTGGAAC+GGG - chr1_1:62384507-62384526 Msa0034410:three_prime_UTR 35.0%
GCCTAGGTAATCTATACTAT+AGG - chr1_1:62384604-62384623 Msa0034410:three_prime_UTR 35.0%
CCCTATAGTATAGATTACCT+AGG + chr1_1:62384608-62384627 None:intergenic 35.0%
AGATCCGTTAAAAATCTGCT+TGG - chr1_1:62384680-62384699 Msa0034410:three_prime_UTR 35.0%
GATCCGTTAAAAATCTGCTT+GGG - chr1_1:62384681-62384700 Msa0034410:three_prime_UTR 35.0%
! TGTCCCAAGCAGATTTTTAA+CGG + chr1_1:62384687-62384706 None:intergenic 35.0%
! TTGTTTGCTGAATCAATGTC+GGG - chr1_1:62384853-62384872 Msa0034410:CDS 35.0%
! TCTAGTTTCTCATAAGATCC+AGG + chr1_1:62385163-62385182 None:intergenic 35.0%
CAGAAAATTCCACTCTATCT+TGG + chr1_1:62385236-62385255 None:intergenic 35.0%
TGTCTGGATTTCAAAATCGT+AGG - chr1_1:62385472-62385491 Msa0034410:intron 35.0%
!!! TTAAGGGTTTTTTGCATGTC+TGG - chr1_1:62385510-62385529 Msa0034410:intron 35.0%
! TTTTGCATGTCTGGATTATC+CGG - chr1_1:62385519-62385538 Msa0034410:intron 35.0%
!!! CACTTTTTTAACACAGGACT+TGG - chr1_1:62385748-62385767 Msa0034410:intron 35.0%
ATATATATCAACTGAGCCCT+GGG + chr1_1:62385839-62385858 None:intergenic 35.0%
!! GCCTTTTGATTGTAGCAAAA+AGG - chr1_1:62385945-62385964 Msa0034410:intron 35.0%
! GCCTTTTTGCTACAATCAAA+AGG + chr1_1:62385949-62385968 None:intergenic 35.0%
AATATGATTCTTCTCGGACA+TGG - chr1_1:62386001-62386020 Msa0034410:intron 35.0%
ATATGATTCTTCTCGGACAT+GGG - chr1_1:62386002-62386021 Msa0034410:intron 35.0%
AAGATTCTCTTGAAACCTTG+TGG + chr1_1:62386057-62386076 None:intergenic 35.0%
ACAAGGTTTCAAGAGAATCT+TGG - chr1_1:62386056-62386075 Msa0034410:intron 35.0%
!!! GTTCTCAGTTTTTTACCTGT+AGG + chr1_1:62386126-62386145 None:intergenic 35.0%
TGGTGTCTTGCATAATCTTT+GGG + chr1_1:62386227-62386246 None:intergenic 35.0%
ATGGTGTCTTGCATAATCTT+TGG + chr1_1:62386228-62386247 None:intergenic 35.0%
! TTGCTCAATAAATTCTGGGA+TGG + chr1_1:62386247-62386266 None:intergenic 35.0%
GAGCCTGCTAATATATGTTT+AGG + chr1_1:62386470-62386489 None:intergenic 35.0%
! CTCCAATATAGTTTGGAACG+GGG - chr1_1:62384508-62384527 Msa0034410:three_prime_UTR 40.0%
! AATATAGTTTGGAACGGGGT+GGG - chr1_1:62384512-62384531 Msa0034410:three_prime_UTR 40.0%
! AGATTACCTAGGCATTGCAA+CGG + chr1_1:62384597-62384616 None:intergenic 40.0%
TTTCTTTCTCTCTTGGTAGG+TGG + chr1_1:62384761-62384780 None:intergenic 40.0%
! CTGAGACAGTGTTTAGAGTT+CGG + chr1_1:62384815-62384834 None:intergenic 40.0%
! GCTAGAAGAAGATGGAGTTT+TGG + chr1_1:62384881-62384900 None:intergenic 40.0%
AACTCCATCTTCTTCTAGCA+AGG - chr1_1:62384882-62384901 Msa0034410:CDS 40.0%
AGTACCTTGCTAGAAGAAGA+TGG + chr1_1:62384889-62384908 None:intergenic 40.0%
TCAATTTGATTCCGTACCCT+AGG - chr1_1:62385100-62385119 Msa0034410:CDS 40.0%
! ATGTTGCTGTTAAGTATGGG+TGG - chr1_1:62385289-62385308 Msa0034410:intron 40.0%
AGACAAATCAAAGGGCTTTG+CGG + chr1_1:62385457-62385476 None:intergenic 40.0%
GATTATCCGGACAAATCAGA+GGG - chr1_1:62385532-62385551 Msa0034410:intron 40.0%
AGTCTAACTCATCCCAAAAC+CGG - chr1_1:62385676-62385695 Msa0034410:intron 40.0%
!! ACACCATATAAGCCGGTTTT+GGG + chr1_1:62385691-62385710 None:intergenic 40.0%
!! TACACCATATAAGCCGGTTT+TGG + chr1_1:62385692-62385711 None:intergenic 40.0%
ACACTCTACACCATATAAGC+CGG + chr1_1:62385698-62385717 None:intergenic 40.0%
CATATATATCAACTGAGCCC+TGG + chr1_1:62385840-62385859 None:intergenic 40.0%
GAGAGTGATTGATACACAAG+AGG - chr1_1:62385888-62385907 Msa0034410:intron 40.0%
TGATACACAAGAGGAGTTTG+AGG - chr1_1:62385897-62385916 Msa0034410:intron 40.0%
TGCTACAATCAAAAGGCTCT+CGG + chr1_1:62385942-62385961 None:intergenic 40.0%
!! TGTGGAGTCTTTGGAATGTT+AGG + chr1_1:62386039-62386058 None:intergenic 40.0%
AACATTCCAAAGACTCCACA+AGG - chr1_1:62386039-62386058 Msa0034410:intron 40.0%
TTGAAACCTTGTGGAGTCTT+TGG + chr1_1:62386048-62386067 None:intergenic 40.0%
!! GAGAATCTTGGTGCTTAGAA+AGG - chr1_1:62386068-62386087 Msa0034410:intron 40.0%
TCTTACTACATCACACCTAC+AGG - chr1_1:62386108-62386127 Msa0034410:intron 40.0%
ATATGCTGCTATCTCATTGC+GGG + chr1_1:62386148-62386167 None:intergenic 40.0%
GATATGCTGCTATCTCATTG+CGG + chr1_1:62386149-62386168 None:intergenic 40.0%
GGTGTCTTGCATAATCTTTG+GGG + chr1_1:62386226-62386245 None:intergenic 40.0%
GACTTGAGGCAAATTGATTG+AGG + chr1_1:62386542-62386561 None:intergenic 40.0%
! CTCCAATATAGTTTGGAACG+GGG - chr1_1:62384508-62384527 Msa0034410:three_prime_UTR 40.0%
! AATATAGTTTGGAACGGGGT+GGG - chr1_1:62384512-62384531 Msa0034410:three_prime_UTR 40.0%
! AGATTACCTAGGCATTGCAA+CGG + chr1_1:62384597-62384616 None:intergenic 40.0%
TTTCTTTCTCTCTTGGTAGG+TGG + chr1_1:62384761-62384780 None:intergenic 40.0%
! CTGAGACAGTGTTTAGAGTT+CGG + chr1_1:62384815-62384834 None:intergenic 40.0%
! GCTAGAAGAAGATGGAGTTT+TGG + chr1_1:62384881-62384900 None:intergenic 40.0%
AACTCCATCTTCTTCTAGCA+AGG - chr1_1:62384882-62384901 Msa0034410:CDS 40.0%
AGTACCTTGCTAGAAGAAGA+TGG + chr1_1:62384889-62384908 None:intergenic 40.0%
TCAATTTGATTCCGTACCCT+AGG - chr1_1:62385100-62385119 Msa0034410:CDS 40.0%
! ATGTTGCTGTTAAGTATGGG+TGG - chr1_1:62385289-62385308 Msa0034410:intron 40.0%
AGACAAATCAAAGGGCTTTG+CGG + chr1_1:62385457-62385476 None:intergenic 40.0%
GATTATCCGGACAAATCAGA+GGG - chr1_1:62385532-62385551 Msa0034410:intron 40.0%
AGTCTAACTCATCCCAAAAC+CGG - chr1_1:62385676-62385695 Msa0034410:intron 40.0%
!! ACACCATATAAGCCGGTTTT+GGG + chr1_1:62385691-62385710 None:intergenic 40.0%
!! TACACCATATAAGCCGGTTT+TGG + chr1_1:62385692-62385711 None:intergenic 40.0%
ACACTCTACACCATATAAGC+CGG + chr1_1:62385698-62385717 None:intergenic 40.0%
CATATATATCAACTGAGCCC+TGG + chr1_1:62385840-62385859 None:intergenic 40.0%
GAGAGTGATTGATACACAAG+AGG - chr1_1:62385888-62385907 Msa0034410:intron 40.0%
TGATACACAAGAGGAGTTTG+AGG - chr1_1:62385897-62385916 Msa0034410:intron 40.0%
TGCTACAATCAAAAGGCTCT+CGG + chr1_1:62385942-62385961 None:intergenic 40.0%
!! TGTGGAGTCTTTGGAATGTT+AGG + chr1_1:62386039-62386058 None:intergenic 40.0%
AACATTCCAAAGACTCCACA+AGG - chr1_1:62386039-62386058 Msa0034410:intron 40.0%
TTGAAACCTTGTGGAGTCTT+TGG + chr1_1:62386048-62386067 None:intergenic 40.0%
!! GAGAATCTTGGTGCTTAGAA+AGG - chr1_1:62386068-62386087 Msa0034410:intron 40.0%
TCTTACTACATCACACCTAC+AGG - chr1_1:62386108-62386127 Msa0034410:intron 40.0%
ATATGCTGCTATCTCATTGC+GGG + chr1_1:62386148-62386167 None:intergenic 40.0%
GATATGCTGCTATCTCATTG+CGG + chr1_1:62386149-62386168 None:intergenic 40.0%
GGTGTCTTGCATAATCTTTG+GGG + chr1_1:62386226-62386245 None:intergenic 40.0%
GACTTGAGGCAAATTGATTG+AGG + chr1_1:62386542-62386561 None:intergenic 40.0%
CACCCCGTTCCAAACTATAT+TGG + chr1_1:62384513-62384532 None:intergenic 45.0%
! CAATATAGTTTGGAACGGGG+TGG - chr1_1:62384511-62384530 Msa0034410:three_prime_UTR 45.0%
! ATTACCTAGGCATTGCAACG+GGG + chr1_1:62384595-62384614 None:intergenic 45.0%
! GATTACCTAGGCATTGCAAC+GGG + chr1_1:62384596-62384615 None:intergenic 45.0%
TAAACAACTGTTCCGTTCGG+TGG - chr1_1:62384781-62384800 Msa0034410:exon 45.0%
AATCTTACGCACCTAGGGTA+CGG + chr1_1:62385114-62385133 None:intergenic 45.0%
!! GCAAAGCCCTTTGATTTGTC+TGG - chr1_1:62385456-62385475 Msa0034410:intron 45.0%
GGATTATCCGGACAAATCAG+AGG - chr1_1:62385531-62385550 Msa0034410:intron 45.0%
! TCAAAGCCCTCTGATTTGTC+CGG + chr1_1:62385541-62385560 None:intergenic 45.0%
! AATTTGGTGGATGACCTGAC+TGG - chr1_1:62385610-62385629 Msa0034410:intron 45.0%
TCTATCCAGTGATTCCAGTC+AGG + chr1_1:62385627-62385646 None:intergenic 45.0%
! CATCCCAAAACCGGCTTATA+TGG - chr1_1:62385685-62385704 Msa0034410:intron 45.0%
GGGTTTATTGTGACAGAGAC+CGG - chr1_1:62385807-62385826 Msa0034410:intron 45.0%
GCTCTCGGATGATCTTATGA+CGG + chr1_1:62385927-62385946 None:intergenic 45.0%
AAAGATCATCCTCAACCCAG+TGG - chr1_1:62386171-62386190 Msa0034410:intron 45.0%
TGTGTTAGGGACCAATTCAG+TGG - chr1_1:62386402-62386421 Msa0034410:intron 45.0%
CACCCCGTTCCAAACTATAT+TGG + chr1_1:62384513-62384532 None:intergenic 45.0%
! CAATATAGTTTGGAACGGGG+TGG - chr1_1:62384511-62384530 Msa0034410:three_prime_UTR 45.0%
! ATTACCTAGGCATTGCAACG+GGG + chr1_1:62384595-62384614 None:intergenic 45.0%
! GATTACCTAGGCATTGCAAC+GGG + chr1_1:62384596-62384615 None:intergenic 45.0%
TAAACAACTGTTCCGTTCGG+TGG - chr1_1:62384781-62384800 Msa0034410:exon 45.0%
AATCTTACGCACCTAGGGTA+CGG + chr1_1:62385114-62385133 None:intergenic 45.0%
!! GCAAAGCCCTTTGATTTGTC+TGG - chr1_1:62385456-62385475 Msa0034410:intron 45.0%
GGATTATCCGGACAAATCAG+AGG - chr1_1:62385531-62385550 Msa0034410:intron 45.0%
! TCAAAGCCCTCTGATTTGTC+CGG + chr1_1:62385541-62385560 None:intergenic 45.0%
! AATTTGGTGGATGACCTGAC+TGG - chr1_1:62385610-62385629 Msa0034410:intron 45.0%
TCTATCCAGTGATTCCAGTC+AGG + chr1_1:62385627-62385646 None:intergenic 45.0%
! CATCCCAAAACCGGCTTATA+TGG - chr1_1:62385685-62385704 Msa0034410:intron 45.0%
GGGTTTATTGTGACAGAGAC+CGG - chr1_1:62385807-62385826 Msa0034410:intron 45.0%
GCTCTCGGATGATCTTATGA+CGG + chr1_1:62385927-62385946 None:intergenic 45.0%
AAAGATCATCCTCAACCCAG+TGG - chr1_1:62386171-62386190 Msa0034410:intron 45.0%
TGTGTTAGGGACCAATTCAG+TGG - chr1_1:62386402-62386421 Msa0034410:intron 45.0%
! GGTGGTGGCGTTTATAAGAG+AGG + chr1_1:62384743-62384762 None:intergenic 50.0%
CTTTCTCTCTTGGTAGGTGG+TGG + chr1_1:62384758-62384777 None:intergenic 50.0%
TCGGAGAAGATACCACCGAA+CGG + chr1_1:62384796-62384815 None:intergenic 50.0%
!! TCAGAGGGCTTTGAAAAGCG+CGG - chr1_1:62385547-62385566 Msa0034410:intron 50.0%
GATGACCTGACTGGAATCAC+TGG - chr1_1:62385619-62385638 Msa0034410:intron 50.0%
! GGTGGTGGCGTTTATAAGAG+AGG + chr1_1:62384743-62384762 None:intergenic 50.0%
CTTTCTCTCTTGGTAGGTGG+TGG + chr1_1:62384758-62384777 None:intergenic 50.0%
TCGGAGAAGATACCACCGAA+CGG + chr1_1:62384796-62384815 None:intergenic 50.0%
!! TCAGAGGGCTTTGAAAAGCG+CGG - chr1_1:62385547-62385566 Msa0034410:intron 50.0%
GATGACCTGACTGGAATCAC+TGG - chr1_1:62385619-62385638 Msa0034410:intron 50.0%
ATGCACAACCCGCCCTCAAT+GGG + chr1_1:62384477-62384496 None:intergenic 55.0%
AATGCACAACCCGCCCTCAA+TGG + chr1_1:62384478-62384497 None:intergenic 55.0%
TCAAAGGGCTTTGCGGAGCA+CGG + chr1_1:62385450-62385469 None:intergenic 55.0%
!! CAGAGGGCTTTGAAAAGCGC+GGG - chr1_1:62385548-62385567 Msa0034410:intron 55.0%
!! GCTTTGAAAAGCGCGGGAGT+TGG - chr1_1:62385554-62385573 Msa0034410:intron 55.0%
! AAAAGCGCGGGAGTTGGAAG+AGG - chr1_1:62385560-62385579 Msa0034410:intron 55.0%
GCAGATACACCACTGGGTTG+AGG + chr1_1:62386183-62386202 None:intergenic 55.0%
ACCCAGTGGTGTATCTGCTG+CGG - chr1_1:62386185-62386204 Msa0034410:intron 55.0%
TCCGCAGCAGATACACCACT+GGG + chr1_1:62386189-62386208 None:intergenic 55.0%
ATCCGCAGCAGATACACCAC+TGG + chr1_1:62386190-62386209 None:intergenic 55.0%
ATGCACAACCCGCCCTCAAT+GGG + chr1_1:62384477-62384496 None:intergenic 55.0%
AATGCACAACCCGCCCTCAA+TGG + chr1_1:62384478-62384497 None:intergenic 55.0%
TCAAAGGGCTTTGCGGAGCA+CGG + chr1_1:62385450-62385469 None:intergenic 55.0%
!! CAGAGGGCTTTGAAAAGCGC+GGG - chr1_1:62385548-62385567 Msa0034410:intron 55.0%
!! GCTTTGAAAAGCGCGGGAGT+TGG - chr1_1:62385554-62385573 Msa0034410:intron 55.0%
! AAAAGCGCGGGAGTTGGAAG+AGG - chr1_1:62385560-62385579 Msa0034410:intron 55.0%
GCAGATACACCACTGGGTTG+AGG + chr1_1:62386183-62386202 None:intergenic 55.0%
ACCCAGTGGTGTATCTGCTG+CGG - chr1_1:62386185-62386204 Msa0034410:intron 55.0%
TCCGCAGCAGATACACCACT+GGG + chr1_1:62386189-62386208 None:intergenic 55.0%
ATCCGCAGCAGATACACCAC+TGG + chr1_1:62386190-62386209 None:intergenic 55.0%
CGGAAGATCCGCCCCATTGA+GGG - chr1_1:62384462-62384481 Msa0034410:three_prime_UTR 60.0%
AAGATCCGCCCCATTGAGGG+CGG - chr1_1:62384465-62384484 Msa0034410:three_prime_UTR 60.0%
TGCACAACCCGCCCTCAATG+GGG + chr1_1:62384476-62384495 None:intergenic 60.0%
! TTTGGAACGGGGTGGGTGCA+TGG - chr1_1:62384519-62384538 Msa0034410:three_prime_UTR 60.0%
TGGGTGCATGGAAGCGGAAG+CGG - chr1_1:62384531-62384550 Msa0034410:three_prime_UTR 60.0%
! ACCTAGGCATTGCAACGGGG+CGG + chr1_1:62384592-62384611 None:intergenic 60.0%
CGGAAGATCCGCCCCATTGA+GGG - chr1_1:62384462-62384481 Msa0034410:three_prime_UTR 60.0%
AAGATCCGCCCCATTGAGGG+CGG - chr1_1:62384465-62384484 Msa0034410:three_prime_UTR 60.0%
TGCACAACCCGCCCTCAATG+GGG + chr1_1:62384476-62384495 None:intergenic 60.0%
! TTTGGAACGGGGTGGGTGCA+TGG - chr1_1:62384519-62384538 Msa0034410:three_prime_UTR 60.0%
TGGGTGCATGGAAGCGGAAG+CGG - chr1_1:62384531-62384550 Msa0034410:three_prime_UTR 60.0%
! ACCTAGGCATTGCAACGGGG+CGG + chr1_1:62384592-62384611 None:intergenic 60.0%
GCGGAAGATCCGCCCCATTG+AGG - chr1_1:62384461-62384480 Msa0034410:three_prime_UTR 65.0%
AGATCCGCCCCATTGAGGGC+GGG - chr1_1:62384466-62384485 Msa0034410:three_prime_UTR 65.0%
ACAACCCGCCCTCAATGGGG+CGG + chr1_1:62384473-62384492 None:intergenic 65.0%
ACGGGGTGGGTGCATGGAAG+CGG - chr1_1:62384525-62384544 Msa0034410:three_prime_UTR 65.0%
GGGTGCATGGAAGCGGAAGC+GGG - chr1_1:62384532-62384551 Msa0034410:three_prime_UTR 65.0%
CATGGAAGCGGAAGCGGGAG+CGG - chr1_1:62384537-62384556 Msa0034410:three_prime_UTR 65.0%
ATGGAAGCGGAAGCGGGAGC+GGG - chr1_1:62384538-62384557 Msa0034410:three_prime_UTR 65.0%
! CCTAGGCATTGCAACGGGGC+GGG + chr1_1:62384591-62384610 None:intergenic 65.0%
GCTTTGCGGAGCACGGAGAC+CGG + chr1_1:62385443-62385462 None:intergenic 65.0%
ACAGAGACCGGCGATGACCC+AGG - chr1_1:62385819-62385838 Msa0034410:intron 65.0%
CAGAGACCGGCGATGACCCA+GGG - chr1_1:62385820-62385839 Msa0034410:intron 65.0%
ACTGAGCCCTGGGTCATCGC+CGG + chr1_1:62385829-62385848 None:intergenic 65.0%
GCGGAAGATCCGCCCCATTG+AGG - chr1_1:62384461-62384480 Msa0034410:three_prime_UTR 65.0%
AGATCCGCCCCATTGAGGGC+GGG - chr1_1:62384466-62384485 Msa0034410:three_prime_UTR 65.0%
ACAACCCGCCCTCAATGGGG+CGG + chr1_1:62384473-62384492 None:intergenic 65.0%
ACGGGGTGGGTGCATGGAAG+CGG - chr1_1:62384525-62384544 Msa0034410:three_prime_UTR 65.0%
GGGTGCATGGAAGCGGAAGC+GGG - chr1_1:62384532-62384551 Msa0034410:three_prime_UTR 65.0%
CATGGAAGCGGAAGCGGGAG+CGG - chr1_1:62384537-62384556 Msa0034410:three_prime_UTR 65.0%
ATGGAAGCGGAAGCGGGAGC+GGG - chr1_1:62384538-62384557 Msa0034410:three_prime_UTR 65.0%
! CCTAGGCATTGCAACGGGGC+GGG + chr1_1:62384591-62384610 None:intergenic 65.0%
GCTTTGCGGAGCACGGAGAC+CGG + chr1_1:62385443-62385462 None:intergenic 65.0%
ACAGAGACCGGCGATGACCC+AGG - chr1_1:62385819-62385838 Msa0034410:intron 65.0%
CAGAGACCGGCGATGACCCA+GGG - chr1_1:62385820-62385839 Msa0034410:intron 65.0%
ACTGAGCCCTGGGTCATCGC+CGG + chr1_1:62385829-62385848 None:intergenic 65.0%
AGCGGAAGCGGGAGCGGGAA+CGG - chr1_1:62384543-62384562 Msa0034410:three_prime_UTR 70.0%
ATTGCAACGGGGCGGGTCGG+AGG + chr1_1:62384584-62384603 None:intergenic 70.0%
GGCATTGCAACGGGGCGGGT+CGG + chr1_1:62384587-62384606 None:intergenic 70.0%
CCCGCCCCGTTGCAATGCCT+AGG - chr1_1:62384588-62384607 Msa0034410:three_prime_UTR 70.0%
AGCGGAAGCGGGAGCGGGAA+CGG - chr1_1:62384543-62384562 Msa0034410:three_prime_UTR 70.0%
ATTGCAACGGGGCGGGTCGG+AGG + chr1_1:62384584-62384603 None:intergenic 70.0%
GGCATTGCAACGGGGCGGGT+CGG + chr1_1:62384587-62384606 None:intergenic 70.0%
CCCGCCCCGTTGCAATGCCT+AGG - chr1_1:62384588-62384607 Msa0034410:three_prime_UTR 70.0%
! CAACGGGGCGGGTCGGAGGC+GGG + chr1_1:62384580-62384599 None:intergenic 80.0%
! GCAACGGGGCGGGTCGGAGG+CGG + chr1_1:62384581-62384600 None:intergenic 80.0%
! CAACGGGGCGGGTCGGAGGC+GGG + chr1_1:62384580-62384599 None:intergenic 80.0%
! GCAACGGGGCGGGTCGGAGG+CGG + chr1_1:62384581-62384600 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 62384448 62386651 62384448 ID=Msa0034410;Name=Msa0034410
chr1_1 mRNA 62384448 62386651 62384448 ID=Msa0034410-mRNA-1;Parent=Msa0034410;Name=Msa0034410-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0.33|0.66|1|1|3|334|226
chr1_1 exon 62384448 62385276 62384448 ID=Msa0034410-mRNA-1:exon:19697;Parent=Msa0034410-mRNA-1
chr1_1 exon 62386196 62386264 62386196 ID=Msa0034410-mRNA-1:exon:19696;Parent=Msa0034410-mRNA-1
chr1_1 exon 62386535 62386651 62386535 ID=Msa0034410-mRNA-1:exon:19695;Parent=Msa0034410-mRNA-1
chr1_1 CDS 62386535 62386651 62386535 ID=Msa0034410-mRNA-1:cds;Parent=Msa0034410-mRNA-1
chr1_1 CDS 62386196 62386264 62386196 ID=Msa0034410-mRNA-1:cds;Parent=Msa0034410-mRNA-1
chr1_1 CDS 62384782 62385276 62384782 ID=Msa0034410-mRNA-1:cds;Parent=Msa0034410-mRNA-1
chr1_1 three_prime_UTR 62384448 62384781 62384448 ID=Msa0034410-mRNA-1:three_prime_utr;Parent=Msa0034410-mRNA-1
Gene Sequence

>Msa0034410

ATGTGGGGTGGTGGCGGAAGATCCGCCCCATTGAGGGCGGGTTGTGCATTCAATTTTTATCTCCAATATAGTTTGGAACGGGGTGGGTGCATGGAAGCGGAAGCGGGAGCGGGAACGTCAGAGCGTGAGAGAAATTTGTTTGCTGAATCAATGTCGGGCTCCAAAACTCCATCTTCTTCTAGCAAGAGACCGGCGATGACCCAGGGCTCAGTTGATATATATGCTGCACAATGCAAACTTTGCATGAAATGGAGAGTGATTGATACACAAGAGGAGTTTGAGGAGATCCGTCATAAGATCATCCGAGAGCCTTTTGATTGTAGCAAAAAGGCTAATCGTAGCTGTGATGATCCTGCTGATATTGAATATGATTCTTCTCGGACATGGGTCATTGACAAGCCTAACATTCCAAAGACTCCACAAGGTTTCAAGAGAATCTTGGTGCTTAGAAAGGATTACTCTAAGTTGGACTCTTACTACATCACACCTACAGGTAAAAAACTGAGAACCCGCAATGAGATAGCAGCATATCTTAAAGATCATCCTCAACCCAGTGGTGTATCTGCTGCGGATTTTGATTTTTCATCCCCAAAGATTATGCAAGACACCATCCCAGAATTTATTGAGCAACAGAAGGATTCTGCAAACAAAAAAGCTAAGATATCTAAAGATGAAGTTTGA
Protein sequence

>Msa0034410

MWGGGGRSAPLRAGCAFNFYLQYSLERGGCMEAEAGAGTSERERNLFAESMSGSKTPSSSSKRPAMTQGSVDIYAAQCKLCMKWRVIDTQEEFEEIRHKIIREPFDCSKKANRSCDDPADIEYDSSRTWVIDKPNIPKTPQGFKRILVLRKDYSKLDSYYITPTGKKLRTRNEIAAYLKDHPQPSGVSAADFDFSSPKIMQDTIPEFIEQQKDSANKKAKISKDEV*