AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0083140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083140 MtrunA17_Chr1g0196481 85.227 176 3 1 51 226 1 153 6.82e-105 299
Msa0083140 MtrunA17_Chr6g0470951 85.093 161 22 1 66 226 1 159 1.37e-98 283
Msa0083140 MtrunA17_Chr6g0460561 84.138 145 23 0 82 226 1 145 1.34e-84 248
Msa0083140 MtrunA17_Chr6g0472721 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0083140 MtrunA17_Chr6g0472711 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0083140 MtrunA17_Chr6g0472741 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0083140 MtrunA17_Chr6g0472631 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0083140 MtrunA17_Chr6g0472671 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0083140 MtrunA17_Chr6g0472701 82.759 145 25 0 82 226 1 145 1.60e-84 247
Msa0083140 MtrunA17_Chr6g0470941 83.448 145 24 0 82 226 1 145 3.22e-84 246
Msa0083140 MtrunA17_Chr6g0472691 82.069 145 26 0 82 226 1 145 6.57e-84 246
Msa0083140 MtrunA17_Chr6g0472731 81.379 145 27 0 82 226 1 145 1.04e-82 243
Msa0083140 MtrunA17_Chr6g0472681 81.379 145 27 0 82 226 1 145 1.07e-82 243
Msa0083140 MtrunA17_Chr6g0460591 82.645 121 21 0 91 211 8 128 1.40e-70 211
Msa0083140 MtrunA17_Chr6g0472651 84.259 108 17 0 82 189 1 108 6.36e-62 189
Msa0083140 MtrunA17_Chr6g0472661 84.259 108 17 0 82 189 1 108 6.36e-62 189
Msa0083140 MtrunA17_Chr6g0460571 85.437 103 15 0 117 219 4 106 9.67e-61 186
Msa0083140 MtrunA17_Chr6g0472621 81.731 104 19 0 82 185 1 104 4.98e-56 174
Msa0083140 MtrunA17_Chr6g0460581 78.723 94 20 0 118 211 3 96 9.42e-51 160
Msa0083140 MtrunA17_Chr6g0472641 80.263 76 15 0 82 157 1 76 1.66e-36 123
Msa0083140 MtrunA17_Chr6g0488751 44.366 142 71 3 70 203 95 236 1.65e-34 125
Msa0083140 MtrunA17_Chr3g0091711 37.079 178 101 4 34 203 28 202 2.45e-32 117
Msa0083140 MtrunA17_Chr3g0091691 37.572 173 97 4 39 203 33 202 2.67e-32 117
Msa0083140 MtrunA17_Chr3g0092081 41.135 141 75 3 71 203 106 246 3.63e-32 119
Msa0083140 MtrunA17_Chr3g0092101 39.716 141 77 3 71 203 103 243 1.87e-29 111
Msa0083140 MtrunA17_Chr3g0091651 35.955 89 53 2 120 204 3 91 1.47e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083140 AT3G63030.1 64.444 135 48 0 71 205 25 159 4.44e-65 200
Msa0083140 AT4G22745.1 56.835 139 60 0 70 208 51 189 4.28e-58 182
Msa0083140 AT5G35330.3 40.426 141 76 3 70 202 55 195 6.58e-31 115
Msa0083140 AT5G35330.1 40.426 141 76 3 70 202 55 195 6.58e-31 115
Msa0083140 AT5G35330.4 40.426 141 76 3 70 202 55 195 6.58e-31 115
Msa0083140 AT5G35330.2 40.426 141 76 3 70 202 55 195 6.58e-31 115
Msa0083140 AT4G00416.1 36.641 131 73 4 71 196 9 134 2.67e-24 95.1
Msa0083140 AT5G35338.2 32.836 134 77 5 76 202 2 129 7.38e-18 77.8

Find 74 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAATAGAAAATATATTT+TGG 0.215768 1_2:+62155616 None:intergenic
TTGAAACCTTGTGGAGTCTT+TGG 0.225609 1_2:+62156084 None:intergenic
TTCTGTTGCTCAATAAATTC+TGG 0.227479 1_2:+62155880 None:intergenic
TGGTGTCTTGCATAATCTTT+GGG 0.244821 1_2:+62155905 None:intergenic
ATGGTGTCTTGCATAATCTT+TGG 0.279956 1_2:+62155904 None:intergenic
TTATTTCTAGATATTGTGTT+AGG 0.290857 1_2:-62155743 Msa0083140:three_prime_UTR
TGTGGAGTCTTTGGAATGTT+AGG 0.313454 1_2:+62156093 None:intergenic
GAGCCTGCTAATATATGTTT+AGG 0.323867 1_2:+62155662 None:intergenic
CACCCCGTCCCAAACTATAT+TGG 0.339399 1_2:+62157615 None:intergenic
ATGCACAACCCGCCCTCAAT+GGG 0.365477 1_2:+62157651 None:intergenic
AATGCAAACTTTGCATGAAA+TGG 0.372986 1_2:-62156263 Msa0083140:CDS
GCTAGAAGAAGATGGAGTTT+TGG 0.380480 1_2:+62157247 None:intergenic
GTTGTTGTTGATGCTAATTA+TGG 0.382170 1_2:-62155785 Msa0083140:three_prime_UTR
ACGGGGTGGGTGCATGGAAG+CGG 0.395232 1_2:-62157600 Msa0083140:CDS
TAGAAAGGATTACTCTAAGT+TGG 0.402694 1_2:-62156046 Msa0083140:CDS
ATATGCTGCTATCTCATTGC+GGG 0.412618 1_2:+62155984 None:intergenic
CGGAAGATCCGCCCCATTGA+GGG 0.417585 1_2:-62157663 Msa0083140:CDS
TGGGTGCATGGAAGCGGAAG+CGG 0.419452 1_2:-62157594 Msa0083140:CDS
TCTGTTGCTCAATAAATTCT+GGG 0.422405 1_2:+62155881 None:intergenic
ACAAGGTTTCAAGAGAATCT+TGG 0.424100 1_2:-62156073 Msa0083140:CDS
AATGCACAACCCGCCCTCAA+TGG 0.433117 1_2:+62157650 None:intergenic
TGCTACAATCAAAAGGCTCT+CGG 0.434619 1_2:+62156190 None:intergenic
ATATTGAATATGATTCTTCT+CGG 0.438557 1_2:-62156134 Msa0083140:CDS
GAGAATCTTGGTGCTTAGAA+AGG 0.448776 1_2:-62156061 Msa0083140:CDS
TTGTTTGCTGAATCAATGTC+GGG 0.454590 1_2:-62157272 Msa0083140:CDS
TTTGTTTCAATACCACTGAA+TGG 0.466412 1_2:+62155715 None:intergenic
CATGGAAGCGGAAGCGGAAG+CGG 0.473059 1_2:-62157588 Msa0083140:CDS
TTTGGGACGGGGTGGGTGCA+TGG 0.473918 1_2:-62157606 Msa0083140:CDS
AATATGATTCTTCTCGGACA+TGG 0.476290 1_2:-62156128 Msa0083140:CDS
GCGGAAGATCCGCCCCATTG+AGG 0.480775 1_2:-62157664 Msa0083140:CDS
TGATACACAAGAGGAGTTTG+AGG 0.485320 1_2:-62156232 Msa0083140:CDS
CAATATAGTTTGGGACGGGG+TGG 0.486697 1_2:-62157614 Msa0083140:CDS
TCTCCAATATAGTTTGGGAC+GGG 0.491119 1_2:-62157618 Msa0083140:CDS
AATATAGTTTGGGACGGGGT+GGG 0.496084 1_2:-62157613 Msa0083140:CDS
TATTTCTAGATATTGTGTTA+GGG 0.498956 1_2:-62155742 Msa0083140:three_prime_UTR
TTTCACATGTGGGGTGGTGG+CGG 0.506512 1_2:-62157683 None:intergenic
ATCTCCAATATAGTTTGGGA+CGG 0.510798 1_2:-62157619 Msa0083140:CDS
TAACCTAAACATATATTAGC+AGG 0.512370 1_2:-62155665 Msa0083140:three_prime_UTR
ATGGAAGCGGAAGCGGAAGC+GGG 0.514650 1_2:-62157587 Msa0083140:CDS
TCTTACTACATCACACCTAC+AGG 0.516283 1_2:-62156021 Msa0083140:CDS
AGCGGAAGCGGAAGCGGGAA+CGG 0.516407 1_2:-62157582 Msa0083140:intron
CATATATATCAACTGAGCCC+TGG 0.521418 1_2:+62156292 None:intergenic
ATATGATTCTTCTCGGACAT+GGG 0.527218 1_2:-62156127 Msa0083140:CDS
TTGTTGATGCTAATTATGGT+TGG 0.527749 1_2:-62155781 Msa0083140:three_prime_UTR
GACTTGAGGCAAATTGATTG+AGG 0.537892 1_2:+62155590 None:intergenic
ACTGAGCCCTGGGTCATCGC+CGG 0.538613 1_2:+62156303 None:intergenic
TTTGTTTGCTGAATCAATGT+CGG 0.540179 1_2:-62157273 Msa0083140:CDS
AGAATTTATTGAGCAACAGA+AGG 0.543104 1_2:-62155878 Msa0083140:CDS
ATATATATCAACTGAGCCCT+GGG 0.551958 1_2:+62156293 None:intergenic
GAATCATATTCAATATCAGC+AGG 0.552211 1_2:+62156141 None:intergenic
GCAGATACACCACTGGGTTG+AGG 0.552234 1_2:+62155949 None:intergenic
AAGATCCGCCCCATTGAGGG+CGG 0.556329 1_2:-62157660 Msa0083140:CDS
CTCCAATATAGTTTGGGACG+GGG 0.556947 1_2:-62157617 Msa0083140:CDS
AACTCCATCTTCTTCTAGCA+AGG 0.558032 1_2:-62157243 Msa0083140:intron
AAGATTCTCTTGAAACCTTG+TGG 0.558153 1_2:+62156075 None:intergenic
AGTACCTTGCTAGAAGAAGA+TGG 0.558912 1_2:+62157239 None:intergenic
ACAGAGACCGGCGATGACCC+AGG 0.559040 1_2:-62156310 Msa0083140:intron
AATATATGTTTAGGTTACAA+TGG 0.565398 1_2:+62155671 None:intergenic
AGATCCGCCCCATTGAGGGC+GGG 0.578215 1_2:-62157659 Msa0083140:CDS
CAGAGACCGGCGATGACCCA+GGG 0.581876 1_2:-62156309 Msa0083140:CDS
ATCCGCAGCAGATACACCAC+TGG 0.582537 1_2:+62155942 None:intergenic
ACCCAGTGGTGTATCTGCTG+CGG 0.611469 1_2:-62155944 Msa0083140:CDS
GATATGCTGCTATCTCATTG+CGG 0.625471 1_2:+62155983 None:intergenic
TTGCTCAATAAATTCTGGGA+TGG 0.634957 1_2:+62155885 None:intergenic
AACATTCCAAAGACTCCACA+AGG 0.636979 1_2:-62156090 Msa0083140:CDS
GAGAGTGATTGATACACAAG+AGG 0.640381 1_2:-62156241 Msa0083140:CDS
ACAACCCGCCCTCAATGGGG+CGG 0.643881 1_2:+62157655 None:intergenic
TGTTAGGGAACACCATTCAG+TGG 0.645154 1_2:-62155727 Msa0083140:three_prime_UTR
GTTTGAGAAATATCATCACA+AGG 0.662203 1_2:-62155817 Msa0083140:exon
TGCACAACCCGCCCTCAATG+GGG 0.667806 1_2:+62157652 None:intergenic
GGTGTCTTGCATAATCTTTG+GGG 0.668330 1_2:+62155906 None:intergenic
GCTCTCGGATGATCTTATGA+CGG 0.668353 1_2:+62156205 None:intergenic
TCCGCAGCAGATACACCACT+GGG 0.695152 1_2:+62155943 None:intergenic
AAAGATCATCCTCAACCCAG+TGG 0.719856 1_2:-62155958 Msa0083140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGAATAGAAAATATATTTT+GGG + chr1_2:62157563-62157582 None:intergenic 10.0%
!!! ATAGAATAGAAAATATATTT+TGG + chr1_2:62157564-62157583 None:intergenic 10.0%
!!! TAGAATAGAAAATATATTTT+GGG + chr1_2:62157563-62157582 None:intergenic 10.0%
!!! ATAGAATAGAAAATATATTT+TGG + chr1_2:62157564-62157583 None:intergenic 10.0%
!!! AACAAATTTAATTTTAGTTC+TGG - chr1_2:62157479-62157498 Msa0083140:intron 15.0%
!!! AACAAATTTAATTTTAGTTC+TGG - chr1_2:62157479-62157498 Msa0083140:intron 15.0%
!!! TTTTTATCTCCAATATAGTT+TGG - chr1_2:62155553-62155572 Msa0083140:three_prime_UTR 20.0%
!!! TTTTATCTCCAATATAGTTT+GGG - chr1_2:62155554-62155573 Msa0083140:three_prime_UTR 20.0%
!!! AGGCCATTTTTTTTTATTTT+CGG + chr1_2:62155689-62155708 None:intergenic 20.0%
!! GAAAAATAGTTGAAAACTAA+GGG + chr1_2:62156019-62156038 None:intergenic 20.0%
!! AGAAAAATAGTTGAAAACTA+AGG + chr1_2:62156020-62156039 None:intergenic 20.0%
!!! TTACTTGTTAATTGAATTGA+AGG - chr1_2:62156099-62156118 Msa0083140:CDS 20.0%
!!! TACTTGTTAATTGAATTGAA+GGG - chr1_2:62156100-62156119 Msa0083140:CDS 20.0%
!!! TGTTAATTTTCTGTTTTGAA+TGG - chr1_2:62156242-62156261 Msa0083140:CDS 20.0%
!!! GTTAATTTTCTGTTTTGAAT+GGG - chr1_2:62156243-62156262 Msa0083140:CDS 20.0%
!!! TTAATTTTCTGTTTTGAATG+GGG - chr1_2:62156244-62156263 Msa0083140:CDS 20.0%
!! TTAAATTGTGCACTATAATT+TGG - chr1_2:62156642-62156661 Msa0083140:intron 20.0%
!! CTCAATATAAAAACCTAATA+TGG + chr1_2:62156706-62156725 None:intergenic 20.0%
!!! ATGGATTATTAAGTCTTTAT+TGG - chr1_2:62156834-62156853 Msa0083140:intron 20.0%
!! TGGATTATTAAGTCTTTATT+GGG - chr1_2:62156835-62156854 Msa0083140:intron 20.0%
!! ATATTGAATATGATTCTTCT+CGG - chr1_2:62157043-62157062 Msa0083140:intron 20.0%
!!! TTATTTCTAGATATTGTGTT+AGG - chr1_2:62157434-62157453 Msa0083140:intron 20.0%
!!! TATTTCTAGATATTGTGTTA+GGG - chr1_2:62157435-62157454 Msa0083140:intron 20.0%
!!! AAATTTAATTTTAGTTCTGG+TGG - chr1_2:62157482-62157501 Msa0083140:intron 20.0%
!!! AATATATGTTTAGGTTACAA+TGG + chr1_2:62157509-62157528 None:intergenic 20.0%
!!! TTTTTATCTCCAATATAGTT+TGG - chr1_2:62155553-62155572 Msa0083140:three_prime_UTR 20.0%
!!! TTTTATCTCCAATATAGTTT+GGG - chr1_2:62155554-62155573 Msa0083140:three_prime_UTR 20.0%
!!! AGGCCATTTTTTTTTATTTT+CGG + chr1_2:62155689-62155708 None:intergenic 20.0%
!! GAAAAATAGTTGAAAACTAA+GGG + chr1_2:62156019-62156038 None:intergenic 20.0%
!! AGAAAAATAGTTGAAAACTA+AGG + chr1_2:62156020-62156039 None:intergenic 20.0%
!!! TTACTTGTTAATTGAATTGA+AGG - chr1_2:62156099-62156118 Msa0083140:CDS 20.0%
!!! TACTTGTTAATTGAATTGAA+GGG - chr1_2:62156100-62156119 Msa0083140:CDS 20.0%
!!! TGTTAATTTTCTGTTTTGAA+TGG - chr1_2:62156242-62156261 Msa0083140:CDS 20.0%
!!! GTTAATTTTCTGTTTTGAAT+GGG - chr1_2:62156243-62156262 Msa0083140:CDS 20.0%
!!! TTAATTTTCTGTTTTGAATG+GGG - chr1_2:62156244-62156263 Msa0083140:CDS 20.0%
!! TTAAATTGTGCACTATAATT+TGG - chr1_2:62156642-62156661 Msa0083140:intron 20.0%
!! CTCAATATAAAAACCTAATA+TGG + chr1_2:62156706-62156725 None:intergenic 20.0%
!!! ATGGATTATTAAGTCTTTAT+TGG - chr1_2:62156834-62156853 Msa0083140:intron 20.0%
!! TGGATTATTAAGTCTTTATT+GGG - chr1_2:62156835-62156854 Msa0083140:intron 20.0%
!! ATATTGAATATGATTCTTCT+CGG - chr1_2:62157043-62157062 Msa0083140:intron 20.0%
!!! TTATTTCTAGATATTGTGTT+AGG - chr1_2:62157434-62157453 Msa0083140:intron 20.0%
!!! TATTTCTAGATATTGTGTTA+GGG - chr1_2:62157435-62157454 Msa0083140:intron 20.0%
!!! AAATTTAATTTTAGTTCTGG+TGG - chr1_2:62157482-62157501 Msa0083140:intron 20.0%
!!! AATATATGTTTAGGTTACAA+TGG + chr1_2:62157509-62157528 None:intergenic 20.0%
! AGAGAAATATAACACTCTTT+AGG + chr1_2:62155709-62155728 None:intergenic 25.0%
!! TTGTTTATTTCTTTCTCTCT+TGG + chr1_2:62155820-62155839 None:intergenic 25.0%
!!! ACTCGATTCCTTTTTTTTTT+AGG - chr1_2:62155983-62156002 Msa0083140:CDS 25.0%
!!! CTCGATTCCTTTTTTTTTTA+GGG - chr1_2:62155984-62156003 Msa0083140:CDS 25.0%
! GACAAAACCCTAAAAAAAAA+AGG + chr1_2:62155994-62156013 None:intergenic 25.0%
!! TCTATTCTTGTTAACTCTTT+TGG - chr1_2:62156043-62156062 Msa0083140:CDS 25.0%
!! CTATTCTTGTTAACTCTTTT+GGG - chr1_2:62156044-62156063 Msa0083140:CDS 25.0%
!!! TGATGTTCTTTTTTCGTTTT+AGG - chr1_2:62156068-62156087 Msa0083140:CDS 25.0%
!!! GATGTTCTTTTTTCGTTTTA+GGG - chr1_2:62156069-62156088 Msa0083140:CDS 25.0%
! AAATCGTAGGAGTAAAAAAA+AGG - chr1_2:62156534-62156553 Msa0083140:intron 25.0%
! AATCGTAGGAGTAAAAAAAA+GGG - chr1_2:62156535-62156554 Msa0083140:intron 25.0%
! GAGTAAAAAAAAGGGTTTAA+GGG - chr1_2:62156543-62156562 Msa0083140:intron 25.0%
! TTATAGTGCACAATTTAACA+TGG + chr1_2:62156640-62156659 None:intergenic 25.0%
!!! TTGGTTTTTTGTCAATAGTA+TGG - chr1_2:62156815-62156834 Msa0083140:intron 25.0%
! TAACCTAAACATATATTAGC+AGG - chr1_2:62157512-62157531 Msa0083140:intron 25.0%
! AGAGAAATATAACACTCTTT+AGG + chr1_2:62155709-62155728 None:intergenic 25.0%
!! TTGTTTATTTCTTTCTCTCT+TGG + chr1_2:62155820-62155839 None:intergenic 25.0%
!!! ACTCGATTCCTTTTTTTTTT+AGG - chr1_2:62155983-62156002 Msa0083140:CDS 25.0%
!!! CTCGATTCCTTTTTTTTTTA+GGG - chr1_2:62155984-62156003 Msa0083140:CDS 25.0%
! GACAAAACCCTAAAAAAAAA+AGG + chr1_2:62155994-62156013 None:intergenic 25.0%
!! TCTATTCTTGTTAACTCTTT+TGG - chr1_2:62156043-62156062 Msa0083140:CDS 25.0%
!! CTATTCTTGTTAACTCTTTT+GGG - chr1_2:62156044-62156063 Msa0083140:CDS 25.0%
!!! TGATGTTCTTTTTTCGTTTT+AGG - chr1_2:62156068-62156087 Msa0083140:CDS 25.0%
!!! GATGTTCTTTTTTCGTTTTA+GGG - chr1_2:62156069-62156088 Msa0083140:CDS 25.0%
! AAATCGTAGGAGTAAAAAAA+AGG - chr1_2:62156534-62156553 Msa0083140:intron 25.0%
! AATCGTAGGAGTAAAAAAAA+GGG - chr1_2:62156535-62156554 Msa0083140:intron 25.0%
! GAGTAAAAAAAAGGGTTTAA+GGG - chr1_2:62156543-62156562 Msa0083140:intron 25.0%
! TTATAGTGCACAATTTAACA+TGG + chr1_2:62156640-62156659 None:intergenic 25.0%
!!! TTGGTTTTTTGTCAATAGTA+TGG - chr1_2:62156815-62156834 Msa0083140:intron 25.0%
! TAACCTAAACATATATTAGC+AGG - chr1_2:62157512-62157531 Msa0083140:intron 25.0%
CCTAGGTAATCTATACTATA+GGG - chr1_2:62155656-62155675 Msa0083140:three_prime_UTR 30.0%
CTAGGTAATCTATACTATAG+GGG - chr1_2:62155657-62155676 Msa0083140:three_prime_UTR 30.0%
TAATCTATACTATAGGGGTA+TGG - chr1_2:62155662-62155681 Msa0083140:three_prime_UTR 30.0%
! AATCTATACTATAGGGGTAT+GGG - chr1_2:62155663-62155682 Msa0083140:three_prime_UTR 30.0%
GGGCCGAAAATAAAAAAAAA+TGG - chr1_2:62155683-62155702 Msa0083140:three_prime_UTR 30.0%
! TTATTTCTTTCTCTCTTGGT+AGG + chr1_2:62155816-62155835 None:intergenic 30.0%
AAATAAACAACTGTTCCGTT+CGG - chr1_2:62155830-62155849 Msa0083140:exon 30.0%
! TTTGTTTGCTGAATCAATGT+CGG - chr1_2:62155904-62155923 Msa0083140:CDS 30.0%
AAAAAAATCTTACGCACCTA+GGG + chr1_2:62156169-62156188 None:intergenic 30.0%
AAAAAAAATCTTACGCACCT+AGG + chr1_2:62156170-62156189 None:intergenic 30.0%
!!! TTGCAGATTTGTTTTTATCC+TGG - chr1_2:62156193-62156212 Msa0083140:CDS 30.0%
ATTGTTAAACCAAGATAGAG+TGG - chr1_2:62156275-62156294 Msa0083140:CDS 30.0%
! TGTTATGTTGCTGTTAAGTA+TGG - chr1_2:62156336-62156355 Msa0083140:intron 30.0%
! GTTATGTTGCTGTTAAGTAT+GGG - chr1_2:62156337-62156356 Msa0083140:intron 30.0%
AATATCAGATCTGCAACAAA+AGG - chr1_2:62156365-62156384 Msa0083140:intron 30.0%
! TTGCTAAATTGTTTCTCTTC+CGG - chr1_2:62156470-62156489 Msa0083140:intron 30.0%
TGAAATCCAGACAAATCAAA+GGG + chr1_2:62156514-62156533 None:intergenic 30.0%
TTGAAATCCAGACAAATCAA+AGG + chr1_2:62156515-62156534 None:intergenic 30.0%
GGAGTAAAAAAAAGGGTTTA+AGG - chr1_2:62156542-62156561 Msa0083140:intron 30.0%
AATTGTGCACTATAATTTGG+TGG - chr1_2:62156645-62156664 Msa0083140:intron 30.0%
ATAGACTGTGATACCATATT+AGG - chr1_2:62156690-62156709 Msa0083140:intron 30.0%
!!! GCTTATCACTTTTTTAACAC+AGG - chr1_2:62156790-62156809 Msa0083140:intron 30.0%
AATGCAAACTTTGCATGAAA+TGG - chr1_2:62156914-62156933 Msa0083140:intron 30.0%
GAATCATATTCAATATCAGC+AGG + chr1_2:62157039-62157058 None:intergenic 30.0%
TAGAAAGGATTACTCTAAGT+TGG - chr1_2:62157131-62157150 Msa0083140:intron 30.0%
TCTGTTGCTCAATAAATTCT+GGG + chr1_2:62157299-62157318 None:intergenic 30.0%
TTCTGTTGCTCAATAAATTC+TGG + chr1_2:62157300-62157319 None:intergenic 30.0%
AGAATTTATTGAGCAACAGA+AGG - chr1_2:62157299-62157318 Msa0083140:intron 30.0%
GTTTGAGAAATATCATCACA+AGG - chr1_2:62157360-62157379 Msa0083140:intron 30.0%
! GTTGTTGTTGATGCTAATTA+TGG - chr1_2:62157392-62157411 Msa0083140:intron 30.0%
TTGTTGATGCTAATTATGGT+TGG - chr1_2:62157396-62157415 Msa0083140:intron 30.0%
TTTGTTTCAATACCACTGAA+TGG + chr1_2:62157465-62157484 None:intergenic 30.0%
TAGAAGAAAAAGAAGACTTG+AGG + chr1_2:62157604-62157623 None:intergenic 30.0%
CCTAGGTAATCTATACTATA+GGG - chr1_2:62155656-62155675 Msa0083140:three_prime_UTR 30.0%
CTAGGTAATCTATACTATAG+GGG - chr1_2:62155657-62155676 Msa0083140:three_prime_UTR 30.0%
TAATCTATACTATAGGGGTA+TGG - chr1_2:62155662-62155681 Msa0083140:three_prime_UTR 30.0%
! AATCTATACTATAGGGGTAT+GGG - chr1_2:62155663-62155682 Msa0083140:three_prime_UTR 30.0%
GGGCCGAAAATAAAAAAAAA+TGG - chr1_2:62155683-62155702 Msa0083140:three_prime_UTR 30.0%
! TTATTTCTTTCTCTCTTGGT+AGG + chr1_2:62155816-62155835 None:intergenic 30.0%
AAATAAACAACTGTTCCGTT+CGG - chr1_2:62155830-62155849 Msa0083140:exon 30.0%
! TTTGTTTGCTGAATCAATGT+CGG - chr1_2:62155904-62155923 Msa0083140:CDS 30.0%
AAAAAAATCTTACGCACCTA+GGG + chr1_2:62156169-62156188 None:intergenic 30.0%
AAAAAAAATCTTACGCACCT+AGG + chr1_2:62156170-62156189 None:intergenic 30.0%
!!! TTGCAGATTTGTTTTTATCC+TGG - chr1_2:62156193-62156212 Msa0083140:CDS 30.0%
ATTGTTAAACCAAGATAGAG+TGG - chr1_2:62156275-62156294 Msa0083140:CDS 30.0%
! TGTTATGTTGCTGTTAAGTA+TGG - chr1_2:62156336-62156355 Msa0083140:intron 30.0%
! GTTATGTTGCTGTTAAGTAT+GGG - chr1_2:62156337-62156356 Msa0083140:intron 30.0%
AATATCAGATCTGCAACAAA+AGG - chr1_2:62156365-62156384 Msa0083140:intron 30.0%
! TTGCTAAATTGTTTCTCTTC+CGG - chr1_2:62156470-62156489 Msa0083140:intron 30.0%
TGAAATCCAGACAAATCAAA+GGG + chr1_2:62156514-62156533 None:intergenic 30.0%
TTGAAATCCAGACAAATCAA+AGG + chr1_2:62156515-62156534 None:intergenic 30.0%
GGAGTAAAAAAAAGGGTTTA+AGG - chr1_2:62156542-62156561 Msa0083140:intron 30.0%
AATTGTGCACTATAATTTGG+TGG - chr1_2:62156645-62156664 Msa0083140:intron 30.0%
ATAGACTGTGATACCATATT+AGG - chr1_2:62156690-62156709 Msa0083140:intron 30.0%
!!! GCTTATCACTTTTTTAACAC+AGG - chr1_2:62156790-62156809 Msa0083140:intron 30.0%
AATGCAAACTTTGCATGAAA+TGG - chr1_2:62156914-62156933 Msa0083140:intron 30.0%
GAATCATATTCAATATCAGC+AGG + chr1_2:62157039-62157058 None:intergenic 30.0%
TAGAAAGGATTACTCTAAGT+TGG - chr1_2:62157131-62157150 Msa0083140:intron 30.0%
TCTGTTGCTCAATAAATTCT+GGG + chr1_2:62157299-62157318 None:intergenic 30.0%
TTCTGTTGCTCAATAAATTC+TGG + chr1_2:62157300-62157319 None:intergenic 30.0%
AGAATTTATTGAGCAACAGA+AGG - chr1_2:62157299-62157318 Msa0083140:intron 30.0%
GTTTGAGAAATATCATCACA+AGG - chr1_2:62157360-62157379 Msa0083140:intron 30.0%
! GTTGTTGTTGATGCTAATTA+TGG - chr1_2:62157392-62157411 Msa0083140:intron 30.0%
TTGTTGATGCTAATTATGGT+TGG - chr1_2:62157396-62157415 Msa0083140:intron 30.0%
TTTGTTTCAATACCACTGAA+TGG + chr1_2:62157465-62157484 None:intergenic 30.0%
TAGAAGAAAAAGAAGACTTG+AGG + chr1_2:62157604-62157623 None:intergenic 30.0%
ATCTCCAATATAGTTTGGGA+CGG - chr1_2:62155558-62155577 Msa0083140:three_prime_UTR 35.0%
GCCTAGGTAATCTATACTAT+AGG - chr1_2:62155655-62155674 Msa0083140:three_prime_UTR 35.0%
CCCTATAGTATAGATTACCT+AGG + chr1_2:62155659-62155678 None:intergenic 35.0%
AGATCCGTTAAAAATCTGCT+TGG - chr1_2:62155732-62155751 Msa0083140:three_prime_UTR 35.0%
GATCCGTTAAAAATCTGCTT+GGG - chr1_2:62155733-62155752 Msa0083140:three_prime_UTR 35.0%
! TGTCCCAAGCAGATTTTTAA+CGG + chr1_2:62155739-62155758 None:intergenic 35.0%
! TTGTTTGCTGAATCAATGTC+GGG - chr1_2:62155905-62155924 Msa0083140:CDS 35.0%
! TCTAGTTTCTCATAAGATCC+AGG + chr1_2:62156214-62156233 None:intergenic 35.0%
CAGAAAATTCCACTCTATCT+TGG + chr1_2:62156287-62156306 None:intergenic 35.0%
TGTCTGGATTTCAAAATCGT+AGG - chr1_2:62156521-62156540 Msa0083140:intron 35.0%
!!! TTAAGGGTTTTTTGCATGTC+TGG - chr1_2:62156559-62156578 Msa0083140:intron 35.0%
! TTTTGCATGTCTGGATTATC+CGG - chr1_2:62156568-62156587 Msa0083140:intron 35.0%
!!! CACTTTTTTAACACAGGACT+TGG - chr1_2:62156796-62156815 Msa0083140:intron 35.0%
ATATATATCAACTGAGCCCT+GGG + chr1_2:62156887-62156906 None:intergenic 35.0%
!! GCCTTTTGATTGTAGCAAAA+AGG - chr1_2:62156993-62157012 Msa0083140:intron 35.0%
! GCCTTTTTGCTACAATCAAA+AGG + chr1_2:62156997-62157016 None:intergenic 35.0%
AATATGATTCTTCTCGGACA+TGG - chr1_2:62157049-62157068 Msa0083140:intron 35.0%
ATATGATTCTTCTCGGACAT+GGG - chr1_2:62157050-62157069 Msa0083140:intron 35.0%
AAGATTCTCTTGAAACCTTG+TGG + chr1_2:62157105-62157124 None:intergenic 35.0%
ACAAGGTTTCAAGAGAATCT+TGG - chr1_2:62157104-62157123 Msa0083140:intron 35.0%
!!! GTTCTCAGTTTTTTACCTGT+AGG + chr1_2:62157174-62157193 None:intergenic 35.0%
TGGTGTCTTGCATAATCTTT+GGG + chr1_2:62157275-62157294 None:intergenic 35.0%
ATGGTGTCTTGCATAATCTT+TGG + chr1_2:62157276-62157295 None:intergenic 35.0%
! TTGCTCAATAAATTCTGGGA+TGG + chr1_2:62157295-62157314 None:intergenic 35.0%
GAGCCTGCTAATATATGTTT+AGG + chr1_2:62157518-62157537 None:intergenic 35.0%
ATCTCCAATATAGTTTGGGA+CGG - chr1_2:62155558-62155577 Msa0083140:three_prime_UTR 35.0%
GCCTAGGTAATCTATACTAT+AGG - chr1_2:62155655-62155674 Msa0083140:three_prime_UTR 35.0%
CCCTATAGTATAGATTACCT+AGG + chr1_2:62155659-62155678 None:intergenic 35.0%
AGATCCGTTAAAAATCTGCT+TGG - chr1_2:62155732-62155751 Msa0083140:three_prime_UTR 35.0%
GATCCGTTAAAAATCTGCTT+GGG - chr1_2:62155733-62155752 Msa0083140:three_prime_UTR 35.0%
! TGTCCCAAGCAGATTTTTAA+CGG + chr1_2:62155739-62155758 None:intergenic 35.0%
! TTGTTTGCTGAATCAATGTC+GGG - chr1_2:62155905-62155924 Msa0083140:CDS 35.0%
! TCTAGTTTCTCATAAGATCC+AGG + chr1_2:62156214-62156233 None:intergenic 35.0%
CAGAAAATTCCACTCTATCT+TGG + chr1_2:62156287-62156306 None:intergenic 35.0%
TGTCTGGATTTCAAAATCGT+AGG - chr1_2:62156521-62156540 Msa0083140:intron 35.0%
!!! TTAAGGGTTTTTTGCATGTC+TGG - chr1_2:62156559-62156578 Msa0083140:intron 35.0%
! TTTTGCATGTCTGGATTATC+CGG - chr1_2:62156568-62156587 Msa0083140:intron 35.0%
!!! CACTTTTTTAACACAGGACT+TGG - chr1_2:62156796-62156815 Msa0083140:intron 35.0%
ATATATATCAACTGAGCCCT+GGG + chr1_2:62156887-62156906 None:intergenic 35.0%
!! GCCTTTTGATTGTAGCAAAA+AGG - chr1_2:62156993-62157012 Msa0083140:intron 35.0%
! GCCTTTTTGCTACAATCAAA+AGG + chr1_2:62156997-62157016 None:intergenic 35.0%
AATATGATTCTTCTCGGACA+TGG - chr1_2:62157049-62157068 Msa0083140:intron 35.0%
ATATGATTCTTCTCGGACAT+GGG - chr1_2:62157050-62157069 Msa0083140:intron 35.0%
AAGATTCTCTTGAAACCTTG+TGG + chr1_2:62157105-62157124 None:intergenic 35.0%
ACAAGGTTTCAAGAGAATCT+TGG - chr1_2:62157104-62157123 Msa0083140:intron 35.0%
!!! GTTCTCAGTTTTTTACCTGT+AGG + chr1_2:62157174-62157193 None:intergenic 35.0%
TGGTGTCTTGCATAATCTTT+GGG + chr1_2:62157275-62157294 None:intergenic 35.0%
ATGGTGTCTTGCATAATCTT+TGG + chr1_2:62157276-62157295 None:intergenic 35.0%
! TTGCTCAATAAATTCTGGGA+TGG + chr1_2:62157295-62157314 None:intergenic 35.0%
GAGCCTGCTAATATATGTTT+AGG + chr1_2:62157518-62157537 None:intergenic 35.0%
! TCTCCAATATAGTTTGGGAC+GGG - chr1_2:62155559-62155578 Msa0083140:three_prime_UTR 40.0%
! AGATTACCTAGGCATTGCAA+CGG + chr1_2:62155648-62155667 None:intergenic 40.0%
TTTCTTTCTCTCTTGGTAGG+TGG + chr1_2:62155813-62155832 None:intergenic 40.0%
! CTGAGACAGTGTTTAGAGTT+CGG + chr1_2:62155867-62155886 None:intergenic 40.0%
! GCTAGAAGAAGATGGAGTTT+TGG + chr1_2:62155933-62155952 None:intergenic 40.0%
AACTCCATCTTCTTCTAGCA+AGG - chr1_2:62155934-62155953 Msa0083140:CDS 40.0%
AGTACCTTGCTAGAAGAAGA+TGG + chr1_2:62155941-62155960 None:intergenic 40.0%
TCAATTTGATTCCGAACCCT+AGG - chr1_2:62156150-62156169 Msa0083140:CDS 40.0%
! ATGTTGCTGTTAAGTATGGG+TGG - chr1_2:62156340-62156359 Msa0083140:intron 40.0%
AGACAAATCAAAGGGCTTTG+CGG + chr1_2:62156506-62156525 None:intergenic 40.0%
GATTATCCGGACAAATCAGA+GGG - chr1_2:62156581-62156600 Msa0083140:intron 40.0%
AGTCTAACTCATCCCAAAAC+CGG - chr1_2:62156724-62156743 Msa0083140:intron 40.0%
!! ACACCATATAAGCCGGTTTT+GGG + chr1_2:62156739-62156758 None:intergenic 40.0%
!! TACACCATATAAGCCGGTTT+TGG + chr1_2:62156740-62156759 None:intergenic 40.0%
ACACTCTACACCATATAAGC+CGG + chr1_2:62156746-62156765 None:intergenic 40.0%
CATATATATCAACTGAGCCC+TGG + chr1_2:62156888-62156907 None:intergenic 40.0%
GAGAGTGATTGATACACAAG+AGG - chr1_2:62156936-62156955 Msa0083140:intron 40.0%
TGATACACAAGAGGAGTTTG+AGG - chr1_2:62156945-62156964 Msa0083140:intron 40.0%
TGCTACAATCAAAAGGCTCT+CGG + chr1_2:62156990-62157009 None:intergenic 40.0%
!! TGTGGAGTCTTTGGAATGTT+AGG + chr1_2:62157087-62157106 None:intergenic 40.0%
AACATTCCAAAGACTCCACA+AGG - chr1_2:62157087-62157106 Msa0083140:intron 40.0%
TTGAAACCTTGTGGAGTCTT+TGG + chr1_2:62157096-62157115 None:intergenic 40.0%
!! GAGAATCTTGGTGCTTAGAA+AGG - chr1_2:62157116-62157135 Msa0083140:intron 40.0%
TCTTACTACATCACACCTAC+AGG - chr1_2:62157156-62157175 Msa0083140:intron 40.0%
ATATGCTGCTATCTCATTGC+GGG + chr1_2:62157196-62157215 None:intergenic 40.0%
GATATGCTGCTATCTCATTG+CGG + chr1_2:62157197-62157216 None:intergenic 40.0%
GGTGTCTTGCATAATCTTTG+GGG + chr1_2:62157274-62157293 None:intergenic 40.0%
GACTTGAGGCAAATTGATTG+AGG + chr1_2:62157590-62157609 None:intergenic 40.0%
! TCTCCAATATAGTTTGGGAC+GGG - chr1_2:62155559-62155578 Msa0083140:three_prime_UTR 40.0%
! AGATTACCTAGGCATTGCAA+CGG + chr1_2:62155648-62155667 None:intergenic 40.0%
TTTCTTTCTCTCTTGGTAGG+TGG + chr1_2:62155813-62155832 None:intergenic 40.0%
! CTGAGACAGTGTTTAGAGTT+CGG + chr1_2:62155867-62155886 None:intergenic 40.0%
! GCTAGAAGAAGATGGAGTTT+TGG + chr1_2:62155933-62155952 None:intergenic 40.0%
AACTCCATCTTCTTCTAGCA+AGG - chr1_2:62155934-62155953 Msa0083140:CDS 40.0%
AGTACCTTGCTAGAAGAAGA+TGG + chr1_2:62155941-62155960 None:intergenic 40.0%
TCAATTTGATTCCGAACCCT+AGG - chr1_2:62156150-62156169 Msa0083140:CDS 40.0%
! ATGTTGCTGTTAAGTATGGG+TGG - chr1_2:62156340-62156359 Msa0083140:intron 40.0%
AGACAAATCAAAGGGCTTTG+CGG + chr1_2:62156506-62156525 None:intergenic 40.0%
GATTATCCGGACAAATCAGA+GGG - chr1_2:62156581-62156600 Msa0083140:intron 40.0%
AGTCTAACTCATCCCAAAAC+CGG - chr1_2:62156724-62156743 Msa0083140:intron 40.0%
!! ACACCATATAAGCCGGTTTT+GGG + chr1_2:62156739-62156758 None:intergenic 40.0%
!! TACACCATATAAGCCGGTTT+TGG + chr1_2:62156740-62156759 None:intergenic 40.0%
ACACTCTACACCATATAAGC+CGG + chr1_2:62156746-62156765 None:intergenic 40.0%
CATATATATCAACTGAGCCC+TGG + chr1_2:62156888-62156907 None:intergenic 40.0%
GAGAGTGATTGATACACAAG+AGG - chr1_2:62156936-62156955 Msa0083140:intron 40.0%
TGATACACAAGAGGAGTTTG+AGG - chr1_2:62156945-62156964 Msa0083140:intron 40.0%
TGCTACAATCAAAAGGCTCT+CGG + chr1_2:62156990-62157009 None:intergenic 40.0%
!! TGTGGAGTCTTTGGAATGTT+AGG + chr1_2:62157087-62157106 None:intergenic 40.0%
AACATTCCAAAGACTCCACA+AGG - chr1_2:62157087-62157106 Msa0083140:intron 40.0%
TTGAAACCTTGTGGAGTCTT+TGG + chr1_2:62157096-62157115 None:intergenic 40.0%
!! GAGAATCTTGGTGCTTAGAA+AGG - chr1_2:62157116-62157135 Msa0083140:intron 40.0%
TCTTACTACATCACACCTAC+AGG - chr1_2:62157156-62157175 Msa0083140:intron 40.0%
ATATGCTGCTATCTCATTGC+GGG + chr1_2:62157196-62157215 None:intergenic 40.0%
GATATGCTGCTATCTCATTG+CGG + chr1_2:62157197-62157216 None:intergenic 40.0%
GGTGTCTTGCATAATCTTTG+GGG + chr1_2:62157274-62157293 None:intergenic 40.0%
GACTTGAGGCAAATTGATTG+AGG + chr1_2:62157590-62157609 None:intergenic 40.0%
! CTCCAATATAGTTTGGGACG+GGG - chr1_2:62155560-62155579 Msa0083140:three_prime_UTR 45.0%
! AATATAGTTTGGGACGGGGT+GGG - chr1_2:62155564-62155583 Msa0083140:three_prime_UTR 45.0%
! ATTACCTAGGCATTGCAACG+GGG + chr1_2:62155646-62155665 None:intergenic 45.0%
! GATTACCTAGGCATTGCAAC+GGG + chr1_2:62155647-62155666 None:intergenic 45.0%
TAAACAACTGTTCCGTTCGG+TGG - chr1_2:62155833-62155852 Msa0083140:exon 45.0%
AATCTTACGCACCTAGGGTT+CGG + chr1_2:62156164-62156183 None:intergenic 45.0%
!! GCAAAGCCCTTTGATTTGTC+TGG - chr1_2:62156505-62156524 Msa0083140:intron 45.0%
GGATTATCCGGACAAATCAG+AGG - chr1_2:62156580-62156599 Msa0083140:intron 45.0%
! TCAAAGCCCTCTGATTTGTC+CGG + chr1_2:62156590-62156609 None:intergenic 45.0%
! AATTTGGTGGATGACCTGAC+TGG - chr1_2:62156658-62156677 Msa0083140:intron 45.0%
TCTATCCAGTGATTCCAGTC+AGG + chr1_2:62156675-62156694 None:intergenic 45.0%
! CATCCCAAAACCGGCTTATA+TGG - chr1_2:62156733-62156752 Msa0083140:intron 45.0%
GGGTTTATTGTGACAGAGAC+CGG - chr1_2:62156855-62156874 Msa0083140:intron 45.0%
GCTCTCGGATGATCTTATGA+CGG + chr1_2:62156975-62156994 None:intergenic 45.0%
AAAGATCATCCTCAACCCAG+TGG - chr1_2:62157219-62157238 Msa0083140:intron 45.0%
TGTTAGGGAACACCATTCAG+TGG - chr1_2:62157450-62157469 Msa0083140:intron 45.0%
! CTCCAATATAGTTTGGGACG+GGG - chr1_2:62155560-62155579 Msa0083140:three_prime_UTR 45.0%
! AATATAGTTTGGGACGGGGT+GGG - chr1_2:62155564-62155583 Msa0083140:three_prime_UTR 45.0%
! ATTACCTAGGCATTGCAACG+GGG + chr1_2:62155646-62155665 None:intergenic 45.0%
! GATTACCTAGGCATTGCAAC+GGG + chr1_2:62155647-62155666 None:intergenic 45.0%
TAAACAACTGTTCCGTTCGG+TGG - chr1_2:62155833-62155852 Msa0083140:exon 45.0%
AATCTTACGCACCTAGGGTT+CGG + chr1_2:62156164-62156183 None:intergenic 45.0%
!! GCAAAGCCCTTTGATTTGTC+TGG - chr1_2:62156505-62156524 Msa0083140:intron 45.0%
GGATTATCCGGACAAATCAG+AGG - chr1_2:62156580-62156599 Msa0083140:intron 45.0%
! TCAAAGCCCTCTGATTTGTC+CGG + chr1_2:62156590-62156609 None:intergenic 45.0%
! AATTTGGTGGATGACCTGAC+TGG - chr1_2:62156658-62156677 Msa0083140:intron 45.0%
TCTATCCAGTGATTCCAGTC+AGG + chr1_2:62156675-62156694 None:intergenic 45.0%
! CATCCCAAAACCGGCTTATA+TGG - chr1_2:62156733-62156752 Msa0083140:intron 45.0%
GGGTTTATTGTGACAGAGAC+CGG - chr1_2:62156855-62156874 Msa0083140:intron 45.0%
GCTCTCGGATGATCTTATGA+CGG + chr1_2:62156975-62156994 None:intergenic 45.0%
AAAGATCATCCTCAACCCAG+TGG - chr1_2:62157219-62157238 Msa0083140:intron 45.0%
TGTTAGGGAACACCATTCAG+TGG - chr1_2:62157450-62157469 Msa0083140:intron 45.0%
CACCCCGTCCCAAACTATAT+TGG + chr1_2:62155565-62155584 None:intergenic 50.0%
! CAATATAGTTTGGGACGGGG+TGG - chr1_2:62155563-62155582 Msa0083140:three_prime_UTR 50.0%
! GGTGGTGGCGTTTATAAGAG+AGG + chr1_2:62155795-62155814 None:intergenic 50.0%
CTTTCTCTCTTGGTAGGTGG+TGG + chr1_2:62155810-62155829 None:intergenic 50.0%
TCGGAGAAGATACCACCGAA+CGG + chr1_2:62155848-62155867 None:intergenic 50.0%
!! TCAGAGGGCTTTGAAAAGCG+CGG - chr1_2:62156596-62156615 Msa0083140:intron 50.0%
GATGACCTGACTGGAATCAC+TGG - chr1_2:62156667-62156686 Msa0083140:intron 50.0%
CACCCCGTCCCAAACTATAT+TGG + chr1_2:62155565-62155584 None:intergenic 50.0%
! CAATATAGTTTGGGACGGGG+TGG - chr1_2:62155563-62155582 Msa0083140:three_prime_UTR 50.0%
! GGTGGTGGCGTTTATAAGAG+AGG + chr1_2:62155795-62155814 None:intergenic 50.0%
CTTTCTCTCTTGGTAGGTGG+TGG + chr1_2:62155810-62155829 None:intergenic 50.0%
TCGGAGAAGATACCACCGAA+CGG + chr1_2:62155848-62155867 None:intergenic 50.0%
!! TCAGAGGGCTTTGAAAAGCG+CGG - chr1_2:62156596-62156615 Msa0083140:intron 50.0%
GATGACCTGACTGGAATCAC+TGG - chr1_2:62156667-62156686 Msa0083140:intron 50.0%
ATGCACAACCCGCCCTCAAT+GGG + chr1_2:62155529-62155548 None:intergenic 55.0%
AATGCACAACCCGCCCTCAA+TGG + chr1_2:62155530-62155549 None:intergenic 55.0%
TCAAAGGGCTTTGCGGAGCA+CGG + chr1_2:62156499-62156518 None:intergenic 55.0%
!! CAGAGGGCTTTGAAAAGCGC+GGG - chr1_2:62156597-62156616 Msa0083140:intron 55.0%
!! GCTTTGAAAAGCGCGGGAGT+TGG - chr1_2:62156603-62156622 Msa0083140:intron 55.0%
! AAAAGCGCGGGAGTTGGAAG+AGG - chr1_2:62156609-62156628 Msa0083140:intron 55.0%
GCAGATACACCACTGGGTTG+AGG + chr1_2:62157231-62157250 None:intergenic 55.0%
ACCCAGTGGTGTATCTGCTG+CGG - chr1_2:62157233-62157252 Msa0083140:intron 55.0%
TCCGCAGCAGATACACCACT+GGG + chr1_2:62157237-62157256 None:intergenic 55.0%
ATCCGCAGCAGATACACCAC+TGG + chr1_2:62157238-62157257 None:intergenic 55.0%
ATGCACAACCCGCCCTCAAT+GGG + chr1_2:62155529-62155548 None:intergenic 55.0%
AATGCACAACCCGCCCTCAA+TGG + chr1_2:62155530-62155549 None:intergenic 55.0%
TCAAAGGGCTTTGCGGAGCA+CGG + chr1_2:62156499-62156518 None:intergenic 55.0%
!! CAGAGGGCTTTGAAAAGCGC+GGG - chr1_2:62156597-62156616 Msa0083140:intron 55.0%
!! GCTTTGAAAAGCGCGGGAGT+TGG - chr1_2:62156603-62156622 Msa0083140:intron 55.0%
! AAAAGCGCGGGAGTTGGAAG+AGG - chr1_2:62156609-62156628 Msa0083140:intron 55.0%
GCAGATACACCACTGGGTTG+AGG + chr1_2:62157231-62157250 None:intergenic 55.0%
ACCCAGTGGTGTATCTGCTG+CGG - chr1_2:62157233-62157252 Msa0083140:intron 55.0%
TCCGCAGCAGATACACCACT+GGG + chr1_2:62157237-62157256 None:intergenic 55.0%
ATCCGCAGCAGATACACCAC+TGG + chr1_2:62157238-62157257 None:intergenic 55.0%
CGGAAGATCCGCCCCATTGA+GGG - chr1_2:62155514-62155533 Msa0083140:three_prime_UTR 60.0%
AAGATCCGCCCCATTGAGGG+CGG - chr1_2:62155517-62155536 Msa0083140:three_prime_UTR 60.0%
TGCACAACCCGCCCTCAATG+GGG + chr1_2:62155528-62155547 None:intergenic 60.0%
TGGGTGCATGGAAGCGGAAG+CGG - chr1_2:62155583-62155602 Msa0083140:three_prime_UTR 60.0%
CATGGAAGCGGAAGCGGAAG+CGG - chr1_2:62155589-62155608 Msa0083140:three_prime_UTR 60.0%
ATGGAAGCGGAAGCGGAAGC+GGG - chr1_2:62155590-62155609 Msa0083140:three_prime_UTR 60.0%
! ACCTAGGCATTGCAACGGGG+CGG + chr1_2:62155643-62155662 None:intergenic 60.0%
CGGAAGATCCGCCCCATTGA+GGG - chr1_2:62155514-62155533 Msa0083140:three_prime_UTR 60.0%
AAGATCCGCCCCATTGAGGG+CGG - chr1_2:62155517-62155536 Msa0083140:three_prime_UTR 60.0%
TGCACAACCCGCCCTCAATG+GGG + chr1_2:62155528-62155547 None:intergenic 60.0%
TGGGTGCATGGAAGCGGAAG+CGG - chr1_2:62155583-62155602 Msa0083140:three_prime_UTR 60.0%
CATGGAAGCGGAAGCGGAAG+CGG - chr1_2:62155589-62155608 Msa0083140:three_prime_UTR 60.0%
ATGGAAGCGGAAGCGGAAGC+GGG - chr1_2:62155590-62155609 Msa0083140:three_prime_UTR 60.0%
! ACCTAGGCATTGCAACGGGG+CGG + chr1_2:62155643-62155662 None:intergenic 60.0%
GCGGAAGATCCGCCCCATTG+AGG - chr1_2:62155513-62155532 Msa0083140:three_prime_UTR 65.0%
AGATCCGCCCCATTGAGGGC+GGG - chr1_2:62155518-62155537 Msa0083140:three_prime_UTR 65.0%
ACAACCCGCCCTCAATGGGG+CGG + chr1_2:62155525-62155544 None:intergenic 65.0%
! TTTGGGACGGGGTGGGTGCA+TGG - chr1_2:62155571-62155590 Msa0083140:three_prime_UTR 65.0%
ACGGGGTGGGTGCATGGAAG+CGG - chr1_2:62155577-62155596 Msa0083140:three_prime_UTR 65.0%
AGCGGAAGCGGAAGCGGGAA+CGG - chr1_2:62155595-62155614 Msa0083140:three_prime_UTR 65.0%
! AGGCATTGCAACGGGGCGGT+CGG + chr1_2:62155639-62155658 None:intergenic 65.0%
ACCGCCCCGTTGCAATGCCT+AGG - chr1_2:62155639-62155658 Msa0083140:three_prime_UTR 65.0%
GCTTTGCGGAGCACGGAGAC+CGG + chr1_2:62156492-62156511 None:intergenic 65.0%
ACAGAGACCGGCGATGACCC+AGG - chr1_2:62156867-62156886 Msa0083140:intron 65.0%
CAGAGACCGGCGATGACCCA+GGG - chr1_2:62156868-62156887 Msa0083140:intron 65.0%
ACTGAGCCCTGGGTCATCGC+CGG + chr1_2:62156877-62156896 None:intergenic 65.0%
GCGGAAGATCCGCCCCATTG+AGG - chr1_2:62155513-62155532 Msa0083140:three_prime_UTR 65.0%
AGATCCGCCCCATTGAGGGC+GGG - chr1_2:62155518-62155537 Msa0083140:three_prime_UTR 65.0%
ACAACCCGCCCTCAATGGGG+CGG + chr1_2:62155525-62155544 None:intergenic 65.0%
! TTTGGGACGGGGTGGGTGCA+TGG - chr1_2:62155571-62155590 Msa0083140:three_prime_UTR 65.0%
ACGGGGTGGGTGCATGGAAG+CGG - chr1_2:62155577-62155596 Msa0083140:three_prime_UTR 65.0%
AGCGGAAGCGGAAGCGGGAA+CGG - chr1_2:62155595-62155614 Msa0083140:three_prime_UTR 65.0%
! AGGCATTGCAACGGGGCGGT+CGG + chr1_2:62155639-62155658 None:intergenic 65.0%
ACCGCCCCGTTGCAATGCCT+AGG - chr1_2:62155639-62155658 Msa0083140:three_prime_UTR 65.0%
GCTTTGCGGAGCACGGAGAC+CGG + chr1_2:62156492-62156511 None:intergenic 65.0%
ACAGAGACCGGCGATGACCC+AGG - chr1_2:62156867-62156886 Msa0083140:intron 65.0%
CAGAGACCGGCGATGACCCA+GGG - chr1_2:62156868-62156887 Msa0083140:intron 65.0%
ACTGAGCCCTGGGTCATCGC+CGG + chr1_2:62156877-62156896 None:intergenic 65.0%
CATTGCAACGGGGCGGTCGG+AGG + chr1_2:62155636-62155655 None:intergenic 70.0%
CATTGCAACGGGGCGGTCGG+AGG + chr1_2:62155636-62155655 None:intergenic 70.0%
TGCAACGGGGCGGTCGGAGG+CGG + chr1_2:62155633-62155652 None:intergenic 75.0%
TGCAACGGGGCGGTCGGAGG+CGG + chr1_2:62155633-62155652 None:intergenic 75.0%
! GCAACGGGGCGGTCGGAGGC+GGG + chr1_2:62155632-62155651 None:intergenic 80.0%
! GCAACGGGGCGGTCGGAGGC+GGG + chr1_2:62155632-62155651 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 62155500 62157699 62155500 ID=Msa0083140;Name=Msa0083140
chr1_2 mRNA 62155500 62157699 62155500 ID=Msa0083140-mRNA-1;Parent=Msa0083140;Name=Msa0083140-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0.33|0.66|1|1|3|334|226
chr1_2 exon 62155500 62156328 62155500 ID=Msa0083140-mRNA-1:exon:20653;Parent=Msa0083140-mRNA-1
chr1_2 exon 62157244 62157312 62157244 ID=Msa0083140-mRNA-1:exon:20652;Parent=Msa0083140-mRNA-1
chr1_2 exon 62157583 62157699 62157583 ID=Msa0083140-mRNA-1:exon:20651;Parent=Msa0083140-mRNA-1
chr1_2 CDS 62157583 62157699 62157583 ID=Msa0083140-mRNA-1:cds;Parent=Msa0083140-mRNA-1
chr1_2 CDS 62157244 62157312 62157244 ID=Msa0083140-mRNA-1:cds;Parent=Msa0083140-mRNA-1
chr1_2 CDS 62155834 62156328 62155834 ID=Msa0083140-mRNA-1:cds;Parent=Msa0083140-mRNA-1
chr1_2 three_prime_UTR 62155500 62155833 62155500 ID=Msa0083140-mRNA-1:three_prime_utr;Parent=Msa0083140-mRNA-1
Gene Sequence

>Msa0083140

ATGTGGGGTGGTGGCGGAAGATCCGCCCCATTGAGGGCGGGTTGTGCATTCAATTTTTATCTCCAATATAGTTTGGGACGGGGTGGGTGCATGGAAGCGGAAGCGGAAGCGGGAACGTCAGAGCGTGAGAGAAATTTGTTTGCTGAATCAATGTCGGGCTCCAAAACTCCATCTTCTTCTAGCAAGAGACCGGCGATGACCCAGGGCTCAGTTGATATATATGCTGCACAATGCAAACTTTGCATGAAATGGAGAGTGATTGATACACAAGAGGAGTTTGAGGAGATCCGTCATAAGATCATCCGAGAGCCTTTTGATTGTAGCAAAAAGGCTAATCGTAGCTGTGATGATCCTGCTGATATTGAATATGATTCTTCTCGGACATGGGTCATTGACAAGCCTAACATTCCAAAGACTCCACAAGGTTTCAAGAGAATCTTGGTGCTTAGAAAGGATTACTCTAAGTTGGACTCTTACTACATCACACCTACAGGTAAAAAACTGAGAACCCGCAATGAGATAGCAGCATATCTTAAAGATCATCCTCAACCCAGTGGTGTATCTGCTGCGGATTTTGATTTTTCATCCCCAAAGATTATGCAAGACACCATCCCAGAATTTATTGAGCAACAGAAGGATTCTGCAAACAAAAAAGCTAAGATATCTAAAGATGAAGTTTGA
Protein sequence

>Msa0083140

MWGGGGRSAPLRAGCAFNFYLQYSLGRGGCMEAEAEAGTSERERNLFAESMSGSKTPSSSSKRPAMTQGSVDIYAAQCKLCMKWRVIDTQEEFEEIRHKIIREPFDCSKKANRSCDDPADIEYDSSRTWVIDKPNIPKTPQGFKRILVLRKDYSKLDSYYITPTGKKLRTRNEIAAYLKDHPQPSGVSAADFDFSSPKIMQDTIPEFIEQQKDSANKKAKISKDEV*