Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0086940 | Msa0109590 | 0.800153 | 1.647358e-48 | -8.615850e-47 |
| Msa0086940 | Msa0126770 | 0.803170 | 3.961709e-49 | -8.615850e-47 |
| Msa0086940 | Msa0549590 | 0.808844 | 2.536195e-50 | -8.615850e-47 |
| Msa0086940 | Msa0619920 | 0.804598 | 2.000573e-49 | -8.615850e-47 |
| Msa0086940 | Msa1093330 | 0.803032 | 4.229398e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTTGCTTTACTTATATT+TGG | 0.067836 | 1_2:-67730146 | Msa0086940:three_prime_UTR |
| CCCTTGCTTTACTTATATTT+GGG | 0.142203 | 1_2:-67730145 | Msa0086940:three_prime_UTR |
| TATCTTCAAAAGATTAATTT+TGG | 0.214228 | 1_2:-67732894 | Msa0086940:CDS |
| CTCAAAAGTGATTGTTAATA+TGG | 0.239804 | 1_2:-67730239 | Msa0086940:three_prime_UTR |
| TGCTTCCAGGACATTGTTAA+AGG | 0.272661 | 1_2:-67730180 | Msa0086940:three_prime_UTR |
| ATCTCGCAACTGCTGCTTCC+AGG | 0.308025 | 1_2:-67730193 | Msa0086940:three_prime_UTR |
| CTTTCAATATAACTCTGATT+TGG | 0.322474 | 1_2:-67730393 | Msa0086940:three_prime_UTR |
| ACTCGATATCATGTTTCTTA+AGG | 0.325202 | 1_2:-67730365 | Msa0086940:three_prime_UTR |
| AATGTAGGTGCTTGAGCTTC+AGG | 0.350763 | 1_2:+67732286 | None:intergenic |
| AGGTCTAGTGAATATTAAAT+AGG | 0.381787 | 1_2:+67730329 | None:intergenic |
| TGCAGCATCAGTTGGTCTAC+TGG | 0.392621 | 1_2:-67730679 | Msa0086940:intron |
| TATGTTGATTACCAGGATAA+TGG | 0.394806 | 1_2:-67732944 | Msa0086940:CDS |
| ATGCTTCTCTATGATGCCTT+TGG | 0.395800 | 1_2:+67732246 | None:intergenic |
| GTTAAGTTGATGCTACTTTG+TGG | 0.418094 | 1_2:-67730475 | Msa0086940:three_prime_UTR |
| AGATGTTTGCAGACTTGCTT+CGG | 0.422683 | 1_2:+67730440 | None:intergenic |
| CTAGGATTATGTTGATTACC+AGG | 0.426979 | 1_2:-67732951 | None:intergenic |
| ATAGAGAAGCATCTGTCAAT+TGG | 0.441065 | 1_2:-67732235 | Msa0086940:CDS |
| TGTAAAAGAGAGGAAGTAAC+TGG | 0.450946 | 1_2:+67732199 | None:intergenic |
| GAAGCAAGTCTGCAAACATC+TGG | 0.486281 | 1_2:-67730438 | Msa0086940:three_prime_UTR |
| CTCTTAAGATGAAGCAATGT+AGG | 0.499420 | 1_2:+67732271 | None:intergenic |
| CCTTGCTTTACTTATATTTG+GGG | 0.502601 | 1_2:-67730144 | Msa0086940:three_prime_UTR |
| TATCATGTTTCTTAAGGAGC+GGG | 0.505823 | 1_2:-67730359 | Msa0086940:three_prime_UTR |
| CATAAGTATCTCCATTATCC+TGG | 0.514201 | 1_2:+67732933 | None:intergenic |
| AACATCCTTTAACAATGTCC+TGG | 0.517872 | 1_2:+67730175 | None:intergenic |
| CATCTGGTTCAGATCTTGAA+AGG | 0.526598 | 1_2:-67730422 | Msa0086940:three_prime_UTR |
| CTTCATCTTAAGAGTTCCAA+AGG | 0.527317 | 1_2:-67732262 | Msa0086940:CDS |
| GCAGCATCAGTTGGTCTACT+GGG | 0.534567 | 1_2:-67730678 | Msa0086940:intron |
| CCCAAATATAAGTAAAGCAA+GGG | 0.551491 | 1_2:+67730145 | None:intergenic |
| ACCTCTTCCTTCACTATAGA+CGG | 0.554482 | 1_2:-67730310 | Msa0086940:three_prime_UTR |
| CCCCAAATATAAGTAAAGCA+AGG | 0.555882 | 1_2:+67730144 | None:intergenic |
| CTTGCTTTACTTATATTTGG+GGG | 0.574557 | 1_2:-67730143 | Msa0086940:three_prime_UTR |
| AATATAAGTAAAGCAAGGGA+AGG | 0.580877 | 1_2:+67730149 | None:intergenic |
| TACAAGTCCGTCTATAGTGA+AGG | 0.587441 | 1_2:+67730303 | None:intergenic |
| ATATCATGTTTCTTAAGGAG+CGG | 0.598045 | 1_2:-67730360 | Msa0086940:three_prime_UTR |
| TCCGTCTATAGTGAAGGAAG+AGG | 0.611336 | 1_2:+67730309 | None:intergenic |
| ATTACAAACCTGTAAAAGAG+AGG | 0.623184 | 1_2:+67732189 | None:intergenic |
| ATATAAGTAAAGCAAGGGAA+GGG | 0.628650 | 1_2:+67730150 | None:intergenic |
| ACTCTTAGTGATGCATGCGG+TGG | 0.630061 | 1_2:+67731157 | None:intergenic |
| TTGACTCTTAGTGATGCATG+CGG | 0.706344 | 1_2:+67731154 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCTTCAAAAGATTAATTT+TGG | - | chr1_2:67730185-67730204 | Msa0086940:three_prime_UTR | 15.0% |
| !! | TTTATCTTCTAATTGTAATT+TGG | - | chr1_2:67730735-67730754 | Msa0086940:intron | 15.0% |
| !! | ATGCTTATATATAATATGTT+TGG | - | chr1_2:67731095-67731114 | Msa0086940:intron | 15.0% |
| !! | TGCTTATATATAATATGTTT+GGG | - | chr1_2:67731096-67731115 | Msa0086940:intron | 15.0% |
| !!! | AATAAGAAGTATTAAAATAG+TGG | + | chr1_2:67731137-67731156 | None:intergenic | 15.0% |
| !! | AATTATACATGTATTATCTA+AGG | - | chr1_2:67732093-67732112 | Msa0086940:intron | 15.0% |
| !! | ATTATACATGTATTATCTAA+GGG | - | chr1_2:67732094-67732113 | Msa0086940:intron | 15.0% |
| !! | TACTATAAAAATCTATAATG+AGG | + | chr1_2:67732120-67732139 | None:intergenic | 15.0% |
| !!! | TCATTATAGATTTTTATAGT+AGG | - | chr1_2:67732119-67732138 | Msa0086940:intron | 15.0% |
| !!! | AGAGAATATATAAATTTTGA+TGG | + | chr1_2:67732181-67732200 | None:intergenic | 15.0% |
| !!! | GTATAGTTTTATTAATGAAA+AGG | - | chr1_2:67732243-67732262 | Msa0086940:CDS | 15.0% |
| !! | TATAATATGTTTGGGAAAAA+AGG | - | chr1_2:67731104-67731123 | Msa0086940:intron | 20.0% |
| !! | ATAATATGTTTGGGAAAAAA+GGG | - | chr1_2:67731105-67731124 | Msa0086940:intron | 20.0% |
| !!! | CATGTTTTAATAATGAAGAT+TGG | - | chr1_2:67731363-67731382 | Msa0086940:intron | 20.0% |
| !! | TAATCAATATGAGCAATTTA+TGG | - | chr1_2:67731673-67731692 | Msa0086940:intron | 20.0% |
| !!! | TTGAAATTGATTAGTTTGTA+TGG | - | chr1_2:67732364-67732383 | Msa0086940:intron | 20.0% |
| !!! | AACTTGTAAATTTTATGATG+TGG | + | chr1_2:67732579-67732598 | None:intergenic | 20.0% |
| !!! | TTCAAAAGATTAATTTTGGC+AGG | - | chr1_2:67730189-67730208 | Msa0086940:three_prime_UTR | 25.0% |
| ! | GTATATAGAAAACTTATGGA+GGG | + | chr1_2:67730279-67730298 | None:intergenic | 25.0% |
| ! | TTCTCATTGAATGAAATGAT+TGG | + | chr1_2:67730326-67730345 | None:intergenic | 25.0% |
| !!! | AACAAGTGTTTTTTAAGTCT+AGG | + | chr1_2:67730377-67730396 | None:intergenic | 25.0% |
| !!! | TTTCTTGATTTGTTTAGCAT+TGG | - | chr1_2:67731057-67731076 | Msa0086940:intron | 25.0% |
| ! | AATTTCTATTGTGTATGACA+GGG | - | chr1_2:67731537-67731556 | Msa0086940:intron | 25.0% |
| !!! | CTTGATAATGTAACCAAAAT+AGG | + | chr1_2:67731743-67731762 | None:intergenic | 25.0% |
| !! | AAATTTTACATGCTTCATTG+AGG | - | chr1_2:67731947-67731966 | Msa0086940:intron | 25.0% |
| ! | TTTATAGTAGGAATCTAGAT+CGG | - | chr1_2:67732131-67732150 | Msa0086940:intron | 25.0% |
| ! | TATGTCATGAAAAATACAGT+TGG | - | chr1_2:67732428-67732447 | Msa0086940:intron | 25.0% |
| !!! | AACTGTTTTATTTGAAAGAG+AGG | - | chr1_2:67732451-67732470 | Msa0086940:intron | 25.0% |
| ! | TATTTGAAAGAGAGGAAAAA+AGG | - | chr1_2:67732459-67732478 | Msa0086940:intron | 25.0% |
| !! | CTTGTCAATCAATTTTTCTT+TGG | + | chr1_2:67732527-67732546 | None:intergenic | 25.0% |
| ! | CTTTCAATATAACTCTGATT+TGG | - | chr1_2:67732686-67732705 | Msa0086940:intron | 25.0% |
| ! | AGGTCTAGTGAATATTAAAT+AGG | + | chr1_2:67732753-67732772 | None:intergenic | 25.0% |
| !!! | CTTTTGAGTCAAATTATAGA+AGG | + | chr1_2:67732828-67732847 | None:intergenic | 25.0% |
| ! | CTCAAAAGTGATTGTTAATA+TGG | - | chr1_2:67732840-67732859 | Msa0086940:intron | 25.0% |
| ! | TATGTTGATTACCAGGATAA+TGG | - | chr1_2:67730135-67730154 | Msa0086940:three_prime_UTR | 30.0% |
| AATCTTACACAAACTTATGG+AGG | + | chr1_2:67730254-67730273 | None:intergenic | 30.0% | |
| GTCAATCTTACACAAACTTA+TGG | + | chr1_2:67730257-67730276 | None:intergenic | 30.0% | |
| GGTATATAGAAAACTTATGG+AGG | + | chr1_2:67730280-67730299 | None:intergenic | 30.0% | |
| CCTGGTATATAGAAAACTTA+TGG | + | chr1_2:67730283-67730302 | None:intergenic | 30.0% | |
| ! | CCATAAGTTTTCTATATACC+AGG | - | chr1_2:67730280-67730299 | Msa0086940:three_prime_UTR | 30.0% |
| CATTCAATGAGAATCAAGAT+AGG | - | chr1_2:67730333-67730352 | Msa0086940:three_prime_UTR | 30.0% | |
| ATCACATGCTTCAATCATTT+GGG | + | chr1_2:67730425-67730444 | None:intergenic | 30.0% | |
| ! | ACTGTCAAACTCATTCTTTT+AGG | + | chr1_2:67730516-67730535 | None:intergenic | 30.0% |
| AACTTAGCATCTATACTCTA+AGG | + | chr1_2:67730625-67730644 | None:intergenic | 30.0% | |
| ATTACAAACCTGTAAAAGAG+AGG | + | chr1_2:67730893-67730912 | None:intergenic | 30.0% | |
| ! | TCTGAAATGTAGTTCTACAA+AGG | - | chr1_2:67730938-67730957 | Msa0086940:intron | 30.0% |
| !!! | TTTTAAGAATCAAAGCACTG+CGG | - | chr1_2:67730969-67730988 | Msa0086940:intron | 30.0% |
| GAAAGACAATACCAATGTAA+TGG | + | chr1_2:67731004-67731023 | None:intergenic | 30.0% | |
| ATTTCAATGCTGAGTCTATT+TGG | - | chr1_2:67731216-67731235 | Msa0086940:intron | 30.0% | |
| AGCAATGGTTTATATAGACT+GGG | - | chr1_2:67731316-67731335 | Msa0086940:intron | 30.0% | |
| !! | ATACAATAACAGAAGCATCA+TGG | + | chr1_2:67731422-67731441 | None:intergenic | 30.0% |
| CAATTTCTATTGTGTATGAC+AGG | - | chr1_2:67731536-67731555 | Msa0086940:intron | 30.0% | |
| ATCCTTAAAACGATTATTGG+GGG | + | chr1_2:67731719-67731738 | None:intergenic | 30.0% | |
| CATCCTTAAAACGATTATTG+GGG | + | chr1_2:67731720-67731739 | None:intergenic | 30.0% | |
| GCATCCTTAAAACGATTATT+GGG | + | chr1_2:67731721-67731740 | None:intergenic | 30.0% | |
| AGTTGCAGTTTATCTTAGAA+TGG | - | chr1_2:67731761-67731780 | Msa0086940:intron | 30.0% | |
| ! | CCAATGTGAAACTTTAACTT+AGG | + | chr1_2:67732034-67732053 | None:intergenic | 30.0% |
| CCTAAGTTAAAGTTTCACAT+TGG | - | chr1_2:67732031-67732050 | Msa0086940:intron | 30.0% | |
| AGAGAACATATGTATGTGAA+GGG | + | chr1_2:67732065-67732084 | None:intergenic | 30.0% | |
| TCTAAAAATGACTAGTGTCA+AGG | + | chr1_2:67732271-67732290 | None:intergenic | 30.0% | |
| !!! | TTTTTTTATGCAGCATCAGT+TGG | - | chr1_2:67732392-67732411 | Msa0086940:intron | 30.0% |
| ACTCGATATCATGTTTCTTA+AGG | - | chr1_2:67732714-67732733 | Msa0086940:intron | 30.0% | |
| ATATCATGTTTCTTAAGGAG+CGG | - | chr1_2:67732719-67732738 | Msa0086940:intron | 30.0% | |
| ATATAAGTAAAGCAAGGGAA+GGG | + | chr1_2:67732932-67732951 | None:intergenic | 30.0% | |
| AATATAAGTAAAGCAAGGGA+AGG | + | chr1_2:67732933-67732952 | None:intergenic | 30.0% | |
| TCCCTTGCTTTACTTATATT+TGG | - | chr1_2:67732933-67732952 | Msa0086940:CDS | 30.0% | |
| CCCAAATATAAGTAAAGCAA+GGG | + | chr1_2:67732937-67732956 | None:intergenic | 30.0% | |
| CCCTTGCTTTACTTATATTT+GGG | - | chr1_2:67732934-67732953 | Msa0086940:CDS | 30.0% | |
| CCTTGCTTTACTTATATTTG+GGG | - | chr1_2:67732935-67732954 | Msa0086940:CDS | 30.0% | |
| CTTGCTTTACTTATATTTGG+GGG | - | chr1_2:67732936-67732955 | Msa0086940:CDS | 30.0% | |
| CATAAGTATCTCCATTATCC+TGG | + | chr1_2:67730149-67730168 | None:intergenic | 35.0% | |
| AAAAGAAAACGCATCACATG+AGG | + | chr1_2:67730225-67730244 | None:intergenic | 35.0% | |
| ! | TCATGTGATGCGTTTTCTTT+TGG | - | chr1_2:67730224-67730243 | Msa0086940:three_prime_UTR | 35.0% |
| ACCAGGATCTTAACTTTAGA+AGG | - | chr1_2:67730297-67730316 | Msa0086940:three_prime_UTR | 35.0% | |
| !! | TCCTTCTAAAGTTAAGATCC+TGG | + | chr1_2:67730301-67730320 | None:intergenic | 35.0% |
| TCAATGAGAATCAAGATAGG+AGG | - | chr1_2:67730336-67730355 | Msa0086940:three_prime_UTR | 35.0% | |
| GATCACATGCTTCAATCATT+TGG | + | chr1_2:67730426-67730445 | None:intergenic | 35.0% | |
| !! | TGTCTTGATAGTTTTGCCTT+TGG | - | chr1_2:67730462-67730481 | Msa0086940:three_prime_UTR | 35.0% |
| TTGCATTATTTAGCCTCCAA+AGG | + | chr1_2:67730481-67730500 | None:intergenic | 35.0% | |
| TAAGGTATATACTTCGTGAG+TGG | + | chr1_2:67730607-67730626 | None:intergenic | 35.0% | |
| CTCTTAAGATGAAGCAATGT+AGG | + | chr1_2:67730811-67730830 | None:intergenic | 35.0% | |
| CTTCATCTTAAGAGTTCCAA+AGG | - | chr1_2:67730817-67730836 | Msa0086940:intron | 35.0% | |
| !! | ATAGAGAAGCATCTGTCAAT+TGG | - | chr1_2:67730844-67730863 | Msa0086940:intron | 35.0% |
| TGTAAAAGAGAGGAAGTAAC+TGG | + | chr1_2:67730883-67730902 | None:intergenic | 35.0% | |
| ! | AGTTACTTCCTCTCTTTTAC+AGG | - | chr1_2:67730882-67730901 | Msa0086940:intron | 35.0% |
| GGACATTTGATCCATTACAT+TGG | - | chr1_2:67730990-67731009 | Msa0086940:intron | 35.0% | |
| ATATGTTTGGGAAAAAAGGG+TGG | - | chr1_2:67731108-67731127 | Msa0086940:intron | 35.0% | |
| !! | TTGTTGATTTACATGCTGAG+CGG | - | chr1_2:67731155-67731174 | Msa0086940:CDS | 35.0% |
| TTGATACTGTAGAAGAGTAG+AGG | - | chr1_2:67731242-67731261 | Msa0086940:intron | 35.0% | |
| CAGCAATGGTTTATATAGAC+TGG | - | chr1_2:67731315-67731334 | Msa0086940:intron | 35.0% | |
| AGATGGCATATGATTAGTGA+GGG | - | chr1_2:67731459-67731478 | Msa0086940:intron | 35.0% | |
| ACTAGTACACACATCACATT+TGG | + | chr1_2:67731589-67731608 | None:intergenic | 35.0% | |
| ATGAGTGGAAGATTCATGTA+AGG | - | chr1_2:67731629-67731648 | Msa0086940:intron | 35.0% | |
| TGAGTGGAAGATTCATGTAA+GGG | - | chr1_2:67731630-67731649 | Msa0086940:intron | 35.0% | |
| GGCATCCTTAAAACGATTAT+TGG | + | chr1_2:67731722-67731741 | None:intergenic | 35.0% | |
| !!! | CGTTTTAAGGATGCCTATTT+TGG | - | chr1_2:67731727-67731746 | Msa0086940:intron | 35.0% |
| !!! | AGGTCCTGCAAAGTTTTATT+GGG | + | chr1_2:67731887-67731906 | None:intergenic | 35.0% |
| GAGAACATATGTATGTGAAG+GGG | + | chr1_2:67732064-67732083 | None:intergenic | 35.0% | |
| CAGAGAACATATGTATGTGA+AGG | + | chr1_2:67732066-67732085 | None:intergenic | 35.0% | |
| !! | GTTAAGTTGATGCTACTTTG+TGG | - | chr1_2:67732604-67732623 | Msa0086940:intron | 35.0% |
| TATCATGTTTCTTAAGGAGC+GGG | - | chr1_2:67732720-67732739 | Msa0086940:intron | 35.0% | |
| AACATCCTTTAACAATGTCC+TGG | + | chr1_2:67732907-67732926 | None:intergenic | 35.0% | |
| CCCCAAATATAAGTAAAGCA+AGG | + | chr1_2:67732938-67732957 | None:intergenic | 35.0% | |
| !! | AGATTAATTTTGGCAGGCTC+TGG | - | chr1_2:67730195-67730214 | Msa0086940:three_prime_UTR | 40.0% |
| !! | CTTGATAGTTTTGCCTTTGG+AGG | - | chr1_2:67730465-67730484 | Msa0086940:three_prime_UTR | 40.0% |
| ATGCTTCTCTATGATGCCTT+TGG | + | chr1_2:67730836-67730855 | None:intergenic | 40.0% | |
| !! | TTTTTGAGGGAAGTCAGCAA+TGG | - | chr1_2:67731301-67731320 | Msa0086940:intron | 40.0% |
| TGGTGAGATAGTGAGTCATT+AGG | - | chr1_2:67731383-67731402 | Msa0086940:intron | 40.0% | |
| GGTGAGATAGTGAGTCATTA+GGG | - | chr1_2:67731384-67731403 | Msa0086940:intron | 40.0% | |
| AAGACGATTGAAAGAGCAGA+TGG | - | chr1_2:67731442-67731461 | Msa0086940:intron | 40.0% | |
| CAGATGGCATATGATTAGTG+AGG | - | chr1_2:67731458-67731477 | Msa0086940:intron | 40.0% | |
| TATGATTAGTGAGGGATGGT+TGG | - | chr1_2:67731467-67731486 | Msa0086940:intron | 40.0% | |
| !! | TCAGGCATTGGCAAATTAAC+CGG | - | chr1_2:67731494-67731513 | Msa0086940:intron | 40.0% |
| GTGATGTGTGTACTAGTTGT+TGG | - | chr1_2:67731592-67731611 | Msa0086940:intron | 40.0% | |
| ATGTGTGTACTAGTTGTTGG+TGG | - | chr1_2:67731595-67731614 | Msa0086940:intron | 40.0% | |
| TGTGTGTACTAGTTGTTGGT+GGG | - | chr1_2:67731596-67731615 | Msa0086940:intron | 40.0% | |
| ! | TGCCCCCAATAATCGTTTTA+AGG | - | chr1_2:67731714-67731733 | Msa0086940:intron | 40.0% |
| TTCGCCCAATAAAACTTTGC+AGG | - | chr1_2:67731880-67731899 | Msa0086940:intron | 40.0% | |
| !! | CAGGTCCTGCAAAGTTTTAT+TGG | + | chr1_2:67731888-67731907 | None:intergenic | 40.0% |
| TTGACTCTTAGTGATGCATG+CGG | + | chr1_2:67731928-67731947 | None:intergenic | 40.0% | |
| CTAGATCGGAACACACAATT+TGG | - | chr1_2:67732145-67732164 | Msa0086940:intron | 40.0% | |
| AGCATAGAAACTTTGTGCAG+TGG | - | chr1_2:67732203-67732222 | Msa0086940:CDS | 40.0% | |
| ! | AGATGTTTGCAGACTTGCTT+CGG | + | chr1_2:67732642-67732661 | None:intergenic | 40.0% |
| ! | CATCTGGTTCAGATCTTGAA+AGG | - | chr1_2:67732657-67732676 | Msa0086940:intron | 40.0% |
| ACCTCTTCCTTCACTATAGA+CGG | - | chr1_2:67732769-67732788 | Msa0086940:intron | 40.0% | |
| TACAAGTCCGTCTATAGTGA+AGG | + | chr1_2:67732779-67732798 | None:intergenic | 40.0% | |
| TGCTTCCAGGACATTGTTAA+AGG | - | chr1_2:67732899-67732918 | Msa0086940:CDS | 40.0% | |
| CAGGAACAGTCTAGCAATGT+AGG | + | chr1_2:67730777-67730796 | None:intergenic | 45.0% | |
| AATGTAGGTGCTTGAGCTTC+AGG | + | chr1_2:67730796-67730815 | None:intergenic | 45.0% | |
| CGTGTTGTCTCATCTCACAA+TGG | - | chr1_2:67731180-67731199 | Msa0086940:intron | 45.0% | |
| GCGTGACTAATAGTCAGCAA+TGG | - | chr1_2:67731264-67731283 | Msa0086940:intron | 45.0% | |
| GGCATATGATTAGTGAGGGA+TGG | - | chr1_2:67731463-67731482 | Msa0086940:intron | 45.0% | |
| TTGTGTATGACAGGGTTTGC+TGG | - | chr1_2:67731545-67731564 | Msa0086940:intron | 45.0% | |
| ! | TGTACTAGTTGTTGGTGGGT+GGG | - | chr1_2:67731600-67731619 | Msa0086940:intron | 45.0% |
| CTATACCTAAATGCACCCAC+TGG | + | chr1_2:67732229-67732248 | None:intergenic | 45.0% | |
| AAGAGAGGAAAAAAGGAGCC+AGG | - | chr1_2:67732466-67732485 | Msa0086940:intron | 45.0% | |
| AGAGAGGAAAAAAGGAGCCA+GGG | - | chr1_2:67732467-67732486 | Msa0086940:intron | 45.0% | |
| GAAGCAAGTCTGCAAACATC+TGG | - | chr1_2:67732641-67732660 | Msa0086940:intron | 45.0% | |
| TCCGTCTATAGTGAAGGAAG+AGG | + | chr1_2:67732773-67732792 | None:intergenic | 45.0% | |
| !! | TTATATTTGGGGGTGCTGCT+AGG | - | chr1_2:67732946-67732965 | Msa0086940:CDS | 45.0% |
| !!! | TTTATTTATTTTTTTTTTTG+AGG | - | chr1_2:67731287-67731306 | Msa0086940:intron | 5.0% |
| !!! | TTATTTATTTTTTTTTTTGA+GGG | - | chr1_2:67731288-67731307 | Msa0086940:intron | 5.0% |
| !! | TAAAAATTAAATATATAAAC+CGG | + | chr1_2:67731516-67731535 | None:intergenic | 5.0% |
| ATTAGTGAGGGATGGTTGGC+TGG | - | chr1_2:67731471-67731490 | Msa0086940:intron | 50.0% | |
| ! | GTGTACTAGTTGTTGGTGGG+TGG | - | chr1_2:67731599-67731618 | Msa0086940:intron | 50.0% |
| GTGGGTGGGAATTTGATGAG+TGG | - | chr1_2:67731614-67731633 | Msa0086940:intron | 50.0% | |
| GGTGGATGCTTCATCTTCAC+AGG | + | chr1_2:67731907-67731926 | None:intergenic | 50.0% | |
| ACTCTTAGTGATGCATGCGG+TGG | + | chr1_2:67731925-67731944 | None:intergenic | 50.0% | |
| AAACTTTGTGCAGTGGCCAG+TGG | - | chr1_2:67732210-67732229 | Msa0086940:CDS | 50.0% | |
| AACTTTGTGCAGTGGCCAGT+GGG | - | chr1_2:67732211-67732230 | Msa0086940:CDS | 50.0% | |
| ! | TGCAGCATCAGTTGGTCTAC+TGG | - | chr1_2:67732400-67732419 | Msa0086940:intron | 50.0% |
| ! | GCAGCATCAGTTGGTCTACT+GGG | - | chr1_2:67732401-67732420 | Msa0086940:intron | 50.0% |
| GAGAGGAAAAAAGGAGCCAG+GGG | - | chr1_2:67732468-67732487 | Msa0086940:intron | 50.0% | |
| TCAAATATTTCCCCCTCCCC+TGG | + | chr1_2:67732487-67732506 | None:intergenic | 50.0% | |
| ! | ATGGTTGGCTGGTCAGGCAT+TGG | - | chr1_2:67731482-67731501 | Msa0086940:intron | 55.0% |
| AGTGGCCAGTGGGTGCATTT+AGG | - | chr1_2:67732221-67732240 | Msa0086940:CDS | 55.0% | |
| AGGAAAAAAGGAGCCAGGGG+AGG | - | chr1_2:67732471-67732490 | Msa0086940:intron | 55.0% | |
| GGAAAAAAGGAGCCAGGGGA+GGG | - | chr1_2:67732472-67732491 | Msa0086940:intron | 55.0% | |
| GAAAAAAGGAGCCAGGGGAG+GGG | - | chr1_2:67732473-67732492 | Msa0086940:intron | 55.0% | |
| AAAAAAGGAGCCAGGGGAGG+GGG | - | chr1_2:67732474-67732493 | Msa0086940:intron | 55.0% | |
| ! | ATCTCGCAACTGCTGCTTCC+AGG | - | chr1_2:67732886-67732905 | Msa0086940:CDS | 55.0% |
| ! | TGAGGGATGGTTGGCTGGTC+AGG | - | chr1_2:67731476-67731495 | Msa0086940:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 67730132 | 67732969 | 67730132 | ID=Msa0086940;Name=Msa0086940 |
| chr1_2 | mRNA | 67730132 | 67732969 | 67730132 | ID=Msa0086940-mRNA-1;Parent=Msa0086940;Name=Msa0086940-mRNA-1;_AED=0.05;_eAED=0.16;_QI=0|0.33|0.5|1|0.33|0.75|4|543|97 |
| chr1_2 | exon | 67730132 | 67730696 | 67730132 | ID=Msa0086940-mRNA-1:exon:23034;Parent=Msa0086940-mRNA-1 |
| chr1_2 | exon | 67731130 | 67731188 | 67731130 | ID=Msa0086940-mRNA-1:exon:23033;Parent=Msa0086940-mRNA-1 |
| chr1_2 | exon | 67732198 | 67732314 | 67732198 | ID=Msa0086940-mRNA-1:exon:23032;Parent=Msa0086940-mRNA-1 |
| chr1_2 | exon | 67732874 | 67732969 | 67732874 | ID=Msa0086940-mRNA-1:exon:23031;Parent=Msa0086940-mRNA-1 |
| chr1_2 | CDS | 67732874 | 67732969 | 67732874 | ID=Msa0086940-mRNA-1:cds;Parent=Msa0086940-mRNA-1 |
| chr1_2 | CDS | 67732198 | 67732314 | 67732198 | ID=Msa0086940-mRNA-1:cds;Parent=Msa0086940-mRNA-1 |
| chr1_2 | CDS | 67731130 | 67731188 | 67731130 | ID=Msa0086940-mRNA-1:cds;Parent=Msa0086940-mRNA-1 |
| chr1_2 | CDS | 67730675 | 67730696 | 67730675 | ID=Msa0086940-mRNA-1:cds;Parent=Msa0086940-mRNA-1 |
| chr1_2 | three_prime_UTR | 67730132 | 67730674 | 67730132 | ID=Msa0086940-mRNA-1:three_prime_utr;Parent=Msa0086940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
