AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1093330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093330 MtrunA17_Chr7g0226811 96.337 273 8 2 1 273 1 271 0.0 525
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093330 AT5G40570.1 49.412 255 72 7 18 272 5 202 1.01e-64 201
Msa1093330 AT5G40570.2 48.092 262 72 8 18 272 5 209 9.50e-62 194
Msa1093330 AT5G14440.1 46.863 271 116 5 22 267 14 281 6.76e-58 187
Msa1093330 AT5G14440.2 47.407 270 115 6 22 267 14 280 1.10e-57 186

Find 87 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGAAATAATTGTTTAAT+TGG 0.119266 7_3:+13093300 None:intergenic
AAAAGATTTCTCAATAAATT+AGG 0.238909 7_3:-13096320 Msa1093330:intron
CATTGAGTTGTTCTTTCATT+TGG 0.268011 7_3:+13093123 None:intergenic
TGAATTTCGGTGAACCTAAT+AGG 0.277383 7_3:+13096686 None:intergenic
GATCGATGGTCTTCAGATTC+AGG 0.289341 7_3:-13094737 Msa1093330:CDS
ATAAGTCAGAGGAACATATT+TGG 0.301067 7_3:-13096358 Msa1093330:CDS
AAACTTAGATTTCTCCGTTA+TGG 0.302413 7_3:-13096776 Msa1093330:exon
AGACAGAAGAGGAAGACTTC+TGG 0.333633 7_3:-13094802 Msa1093330:CDS
GCTGAAGAAGGGGATGTAAT+TGG 0.333920 7_3:-13094689 Msa1093330:intron
ACATCCCCTTCTTCAGCTTC+CGG 0.343430 7_3:+13094695 None:intergenic
CAGGAAGAAGGAATTGAAAA+TGG 0.351279 7_3:-13094989 Msa1093330:CDS
AGAGTAAAAGGGTATGTCTT+TGG 0.354297 7_3:+13096609 None:intergenic
TTTCCGATTTCCTTGAATTT+CGG 0.355198 7_3:+13096673 None:intergenic
AGACTTCAGCTGAGAGAGTT+AGG 0.355337 7_3:-13096846 None:intergenic
AAAGAAGGAAGCAACCTATT+AGG 0.361574 7_3:-13096700 Msa1093330:CDS
AAGAACTTATTTCTGAAGTT+AGG 0.378235 7_3:-13094847 Msa1093330:CDS
ATTATGAAACAATGCGGATT+CGG 0.382595 7_3:-13093421 Msa1093330:three_prime_UTR
CCCATGTTGTTAAGTCTCAT+AGG 0.388932 7_3:-13093081 Msa1093330:three_prime_UTR
GGCGGAGACGACGGCGGAGG+TGG 0.395211 7_3:-13096755 Msa1093330:CDS
TTATGAAACAATGCGGATTC+GGG 0.400899 7_3:-13093420 Msa1093330:three_prime_UTR
TTAATCAAGATCCTCTTTGC+CGG 0.403502 7_3:-13096516 Msa1093330:intron
TCACCTATTGCTGCAAAACT+TGG 0.410684 7_3:+13093473 None:intergenic
GCCTCCTGCTGGAGAACGCT+GGG 0.429277 7_3:-13094777 Msa1093330:CDS
GACTTCTGGATGCCTCCTGC+TGG 0.436042 7_3:-13094788 Msa1093330:CDS
GGAGACGACGGCGGAGGTGG+AGG 0.437054 7_3:-13096752 Msa1093330:CDS
TGCCTCCTGCTGGAGAACGC+TGG 0.437280 7_3:-13094778 Msa1093330:CDS
TCACCGAAATTCAAGGAAAT+CGG 0.437920 7_3:-13096676 Msa1093330:CDS
CTTTCTAGAAGCAAAGCTAC+TGG 0.447596 7_3:+13093546 None:intergenic
GGGTCTCATCGATTTCGCTT+TGG 0.447863 7_3:-13096566 Msa1093330:CDS
TCTTGATTAAACATATTAAG+AGG 0.450456 7_3:+13096529 None:intergenic
CAGCTGAGAGAGTTAGGTCT+TGG 0.456532 7_3:-13096840 None:intergenic
AATTTCATAAACAGAGCAAC+AGG 0.461659 7_3:-13095008 Msa1093330:intron
GACGACGGCGGAGGTGGAGG+TGG 0.469629 7_3:-13096749 Msa1093330:CDS
TTCCGGTTCTGACTCTGAAT+CGG 0.470015 7_3:+13094712 None:intergenic
ATGTAAGTTGACTGGTCATA+AGG 0.472920 7_3:-13096384 Msa1093330:CDS
CGATTCAAATGCGTAGAGAC+AGG 0.475721 7_3:-13096646 Msa1093330:CDS
ATTAGGTTCACCGAAATTCA+AGG 0.477171 7_3:-13096683 Msa1093330:CDS
CTCACACAAAACTACTGAAA+AGG 0.480495 7_3:+13093351 None:intergenic
GAAAATGTTAAGCAGAAAGA+AGG 0.488229 7_3:-13096715 Msa1093330:CDS
AAAAGACTGTCAATAGAAGT+TGG 0.489243 7_3:-13093571 Msa1093330:CDS
TTGTCCCAGCGTTCTCCAGC+AGG 0.495445 7_3:+13094773 None:intergenic
TCAGAACCGGAAGCTGAAGA+AGG 0.499166 7_3:-13094701 Msa1093330:CDS
CATATTTGGAAGCATATGAC+TGG 0.499988 7_3:-13096344 Msa1093330:CDS
GTCCGATTCAGAGTCAGAAC+CGG 0.505178 7_3:-13094714 Msa1093330:CDS
ACTGAATAAACTTCTAACTC+TGG 0.508168 7_3:-13093215 Msa1093330:three_prime_UTR
ATCGATGGTCTTCAGATTCA+GGG 0.514860 7_3:-13094736 Msa1093330:CDS
GAATTAAGTTATGTAAGATC+AGG 0.517467 7_3:-13093452 Msa1093330:three_prime_UTR
CGCCGTCGTCTCCGCCATAA+CGG 0.522604 7_3:+13096762 None:intergenic
CAGAACCGGAAGCTGAAGAA+GGG 0.536386 7_3:-13094700 Msa1093330:CDS
TAAACAGAGCAACAGGAAGA+AGG 0.539912 7_3:-13095001 Msa1093330:intron
TGTAGATGGTGATGCTGATG+TGG 0.540196 7_3:-13093748 Msa1093330:intron
CCATGTTGTTAAGTCTCATA+GGG 0.545485 7_3:-13093080 Msa1093330:three_prime_UTR
AAAGTTATGAAATTATGCAT+TGG 0.547469 7_3:-13092988 Msa1093330:three_prime_UTR
CTTTCATTTGGCATTACATG+AGG 0.554428 7_3:+13093135 None:intergenic
TATGGCGGAGACGACGGCGG+AGG 0.560954 7_3:-13096758 Msa1093330:CDS
TTTCTAGAAGCAAAGCTACT+GGG 0.563107 7_3:+13093547 None:intergenic
GGAGGTGGAGGTGGCGACGA+CGG 0.564488 7_3:-13096740 Msa1093330:CDS
AAGTTGATATGTAAGTTGAC+TGG 0.567064 7_3:-13096392 Msa1093330:CDS
CTCCGTTATGGCGGAGACGA+CGG 0.569517 7_3:-13096764 Msa1093330:exon
CCCTATGAGACTTAACAACA+TGG 0.569930 7_3:+13093080 None:intergenic
GGTGGAGGTGGCGACGACGG+AGG 0.575137 7_3:-13096737 Msa1093330:CDS
CTTAGATTTCTCCGTTATGG+CGG 0.576552 7_3:-13096773 Msa1093330:exon
AAATTCAAGGAAATCGGAAA+CGG 0.578058 7_3:-13096670 Msa1093330:CDS
CGAAGAAATTACCGGCAAAG+AGG 0.578448 7_3:+13096505 None:intergenic
ATGAAAGAACAACTCAATGC+GGG 0.579808 7_3:-13093119 Msa1093330:three_prime_UTR
AGTTAGGAAGTCTTCTAATG+AGG 0.585084 7_3:-13094831 Msa1093330:CDS
ATTTCATGATTTCACCACAA+TGG 0.589727 7_3:-13093286 Msa1093330:three_prime_UTR
TCCCAGCGTTCTCCAGCAGG+AGG 0.591225 7_3:+13094776 None:intergenic
TGACGAGACTTGATATATGT+TGG 0.600516 7_3:-13093506 Msa1093330:exon
TGAGGAAAGTGAGACAGAAG+AGG 0.603864 7_3:-13094813 Msa1093330:CDS
GAACGCTGGGACAACGATGA+CGG 0.608337 7_3:-13094764 Msa1093330:CDS
AGAGTATGAACTCACATGAG+TGG 0.623349 7_3:-13093047 Msa1093330:three_prime_UTR
CCTATGAGACTTAACAACAT+GGG 0.625548 7_3:+13093081 None:intergenic
AATGAATATTACAGCCATTG+TGG 0.637059 7_3:+13093272 None:intergenic
CTATGAGACTTAACAACATG+GGG 0.641103 7_3:+13093082 None:intergenic
AGTCAGAAGAGTTATCCTCA+AGG 0.648284 7_3:-13093716 Msa1093330:intron
TGATGCTGATGTGGATTGCA+AGG 0.649831 7_3:-13093739 Msa1093330:CDS
GAGCAGCAAAGTGTAGATTG+TGG 0.650739 7_3:-13094953 Msa1093330:CDS
CGTTATGGCGGAGACGACGG+CGG 0.659283 7_3:-13096761 Msa1093330:exon
AGAACCGGAAGCTGAAGAAG+GGG 0.662051 7_3:-13094699 Msa1093330:CDS
TCATAAGGTTAATAAGTCAG+AGG 0.664439 7_3:-13096369 Msa1093330:CDS
ACGATGACGGAGGAGATCGA+TGG 0.666524 7_3:-13094751 Msa1093330:CDS
ATATTTGGAAGCATATGACT+GGG 0.673946 7_3:-13096343 Msa1093330:CDS
CGCTGGGACAACGATGACGG+AGG 0.680098 7_3:-13094761 Msa1093330:CDS
AATGAAAGAACAACTCAATG+CGG 0.697949 7_3:-13093120 Msa1093330:three_prime_UTR
AGTGTATCCGAATACTCATG+TGG 0.700828 7_3:-13093024 Msa1093330:three_prime_UTR
ATATGCATTATGAAACAATG+CGG 0.745089 7_3:-13093427 Msa1093330:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTGATTCAATTTT+TGG - chr7_3:13093535-13093554 Msa1093330:CDS 10.0%
!! ATTATTTCAAACTAAAAATT+GGG + chr7_3:13094512-13094531 None:intergenic 10.0%
!!! TAAAAATTAGAAGTATTATT+AGG + chr7_3:13095514-13095533 None:intergenic 10.0%
!!! ATTGTGTAATTTTAAATAAT+AGG + chr7_3:13095671-13095690 None:intergenic 10.0%
!!! TATTATTTAAAATTACACAA+TGG - chr7_3:13095670-13095689 Msa1093330:intron 10.0%
!!! ATTATTTAAAATTACACAAT+GGG - chr7_3:13095671-13095690 Msa1093330:intron 10.0%
!! AAAAGATTTCTCAATAAATT+AGG - chr7_3:13093500-13093519 Msa1093330:exon 15.0%
!! ATCTTCTTTCATAAAAATAT+AGG + chr7_3:13093905-13093924 None:intergenic 15.0%
!!! TATTTTTATGAAAGAAGATA+AGG - chr7_3:13093906-13093925 Msa1093330:intron 15.0%
!!! TTTTTCAATCTAATTTCATT+TGG - chr7_3:13094096-13094115 Msa1093330:intron 15.0%
!! CATTATTTCAAACTAAAAAT+TGG + chr7_3:13094513-13094532 None:intergenic 15.0%
!!! ATTTTTAGTTTGAAATAATG+TGG - chr7_3:13094513-13094532 Msa1093330:intron 15.0%
!!! TTTTTAGTTTGAAATAATGT+GGG - chr7_3:13094514-13094533 Msa1093330:intron 15.0%
!! GATTATAATTGTTATAACAA+AGG - chr7_3:13095391-13095410 Msa1093330:intron 15.0%
!!! ATTTTAAATAATAGGAGTTA+AGG + chr7_3:13095663-13095682 None:intergenic 15.0%
!! TTATTATTAATTGTCAGTTA+TGG + chr7_3:13095828-13095847 None:intergenic 15.0%
!!! ACATTTTTTTTTTTTGTAGA+TGG - chr7_3:13096058-13096077 Msa1093330:intron 15.0%
!! TCATGAAATAATTGTTTAAT+TGG + chr7_3:13096523-13096542 None:intergenic 15.0%
!!! TTTTTACTGTTAGAGTAAAA+GGG + chr7_3:13093225-13093244 None:intergenic 20.0%
!!! TTTTTTACTGTTAGAGTAAA+AGG + chr7_3:13093226-13093245 None:intergenic 20.0%
!! TCTTGATTAAACATATTAAG+AGG + chr7_3:13093294-13093313 None:intergenic 20.0%
!!! GACAATTTTTGTAAGTTTTT+TGG - chr7_3:13093710-13093729 Msa1093330:intron 20.0%
!! TATACACAAGCTATATTTAT+AGG + chr7_3:13093821-13093840 None:intergenic 20.0%
!! TCAAATATAGAAGATCTATT+TGG + chr7_3:13094070-13094089 None:intergenic 20.0%
!!! AAATTTGTTAAAAACTTCCA+TGG + chr7_3:13094135-13094154 None:intergenic 20.0%
!!! AATTTGTCATTTTGTGAATT+TGG - chr7_3:13094433-13094452 Msa1093330:intron 20.0%
!!! TCATTTGTTAATTATTTCTG+TGG - chr7_3:13094765-13094784 Msa1093330:CDS 20.0%
!! TATAAGTAGCATCTTATAAT+AGG + chr7_3:13095244-13095263 None:intergenic 20.0%
!! TTGTGTTTATGAATAAAACA+GGG + chr7_3:13095800-13095819 None:intergenic 20.0%
!!! CATATTATTTCTTTATTCCT+AGG - chr7_3:13095952-13095971 Msa1093330:intron 20.0%
!!! AACATATAGATTTGGTAATA+TGG + chr7_3:13096198-13096217 None:intergenic 20.0%
!! AAAGTTATGAAATTATGCAT+TGG - chr7_3:13096832-13096851 Msa1093330:five_prime_UTR 20.0%
! TAACAGTAAAAAATGTCGTT+TGG - chr7_3:13093233-13093252 Msa1093330:three_prime_UTR 25.0%
!! AACAGTAAAAAATGTCGTTT+GGG - chr7_3:13093234-13093253 Msa1093330:three_prime_UTR 25.0%
! ACGAAAACATAAAATGCAAA+AGG + chr7_3:13093343-13093362 None:intergenic 25.0%
!!! GTTTTAGTACTTTAAGTTGT+AGG - chr7_3:13093569-13093588 Msa1093330:CDS 25.0%
! CTTATGTATTAACTACTGTT+TGG - chr7_3:13093615-13093634 Msa1093330:intron 25.0%
! ATAGAAGATCTATTTGGATT+TGG + chr7_3:13094064-13094083 None:intergenic 25.0%
!! TGATTTTGTCAAATTACTAG+CGG + chr7_3:13094300-13094319 None:intergenic 25.0%
!!! AAGAACTTATTTCTGAAGTT+AGG - chr7_3:13094973-13094992 Msa1093330:CDS 25.0%
! AGTTTAGAGAAAATGTGTTA+TGG + chr7_3:13095168-13095187 None:intergenic 25.0%
! TACTAATAGTTTGATAGAAC+CGG - chr7_3:13095468-13095487 Msa1093330:intron 25.0%
!!! AAACAGAGATTTGTTACAAA+GGG - chr7_3:13095540-13095559 Msa1093330:intron 25.0%
! TCTCTAGTAACTATAAAAAC+TGG + chr7_3:13095701-13095720 None:intergenic 25.0%
! CTTGTGTTTATGAATAAAAC+AGG + chr7_3:13095801-13095820 None:intergenic 25.0%
! TTATCTACTACTCTAATATG+AGG - chr7_3:13095871-13095890 Msa1093330:intron 25.0%
! AAACTTTACCAAACTAAACA+TGG + chr7_3:13095917-13095936 None:intergenic 25.0%
!! ATTACTAGTTTCCAAACATT+AGG - chr7_3:13096146-13096165 Msa1093330:intron 25.0%
!!! TTTTGATTAGTCCTAATGTT+TGG + chr7_3:13096160-13096179 None:intergenic 25.0%
!! ATTTGGTAATATGGAAAACT+AGG + chr7_3:13096189-13096208 None:intergenic 25.0%
! AGAAACTCAACATATAGATT+TGG + chr7_3:13096206-13096225 None:intergenic 25.0%
! GAATTAAGTTATGTAAGATC+AGG - chr7_3:13096368-13096387 Msa1093330:CDS 25.0%
! ATATGCATTATGAAACAATG+CGG - chr7_3:13096393-13096412 Msa1093330:CDS 25.0%
!! AATTTTACCACATGAGTATT+CGG + chr7_3:13096806-13096825 None:intergenic 25.0%
AAACTTAGATTTCTCCGTTA+TGG - chr7_3:13093044-13093063 Msa1093330:three_prime_UTR 30.0%
GAAAATGTTAAGCAGAAAGA+AGG - chr7_3:13093105-13093124 Msa1093330:three_prime_UTR 30.0%
TTTCCGATTTCCTTGAATTT+CGG + chr7_3:13093150-13093169 None:intergenic 30.0%
AAATTCAAGGAAATCGGAAA+CGG - chr7_3:13093150-13093169 Msa1093330:three_prime_UTR 30.0%
AAAAGGAACGAAGAAATTAC+CGG + chr7_3:13093326-13093345 None:intergenic 30.0%
!! AAGTTGATATGTAAGTTGAC+TGG - chr7_3:13093428-13093447 Msa1093330:three_prime_UTR 30.0%
TCATAAGGTTAATAAGTCAG+AGG - chr7_3:13093451-13093470 Msa1093330:three_prime_UTR 30.0%
ATAAGTCAGAGGAACATATT+TGG - chr7_3:13093462-13093481 Msa1093330:three_prime_UTR 30.0%
! ATATTTGGAAGCATATGACT+GGG - chr7_3:13093477-13093496 Msa1093330:three_prime_UTR 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - chr7_3:13093666-13093685 Msa1093330:intron 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG - chr7_3:13093667-13093686 Msa1093330:intron 30.0%
AATAAGCAGTTTATCCAAAC+AGG - chr7_3:13093879-13093898 Msa1093330:intron 30.0%
CATAAAAATATAGGCCTGTT+TGG + chr7_3:13093896-13093915 None:intergenic 30.0%
CAAATTGTACATACGATTGA+AGG + chr7_3:13094419-13094438 None:intergenic 30.0%
TTAAATGAAATGACAAGCCT+CGG - chr7_3:13094540-13094559 Msa1093330:intron 30.0%
CATATTGAAATCTGAGTATC+CGG - chr7_3:13094691-13094710 Msa1093330:CDS 30.0%
AATTTCATAAACAGAGCAAC+AGG - chr7_3:13094812-13094831 Msa1093330:CDS 30.0%
GAAGTTTATAAAGAAGACAC+AGG - chr7_3:13095280-13095299 Msa1093330:intron 30.0%
! AAATTTTCACTAGTGTCCTT+CGG + chr7_3:13095417-13095436 None:intergenic 30.0%
AAATCAAAGTAGTTTCATGC+CGG + chr7_3:13095490-13095509 None:intergenic 30.0%
!! CAAACAGAGATTTGTTACAA+AGG - chr7_3:13095539-13095558 Msa1093330:intron 30.0%
! ATTTGTTACAAAGGGAGAAA+AGG - chr7_3:13095548-13095567 Msa1093330:intron 30.0%
AAGGAAATACAATAGAGAGA+TGG - chr7_3:13095567-13095586 Msa1093330:intron 30.0%
TAGTTACTAGAGATAAGTAG+AGG - chr7_3:13095708-13095727 Msa1093330:intron 30.0%
GAGATTAGCGATATATTACA+TGG - chr7_3:13095995-13096014 Msa1093330:intron 30.0%
TACAAGAAAATTAACAGAGC+AGG - chr7_3:13096033-13096052 Msa1093330:intron 30.0%
AAAAGACTGTCAATAGAAGT+TGG - chr7_3:13096249-13096268 Msa1093330:intron 30.0%
ATTATGAAACAATGCGGATT+CGG - chr7_3:13096399-13096418 Msa1093330:CDS 30.0%
ATTTCATGATTTCACCACAA+TGG - chr7_3:13096534-13096553 Msa1093330:CDS 30.0%
AATGAATATTACAGCCATTG+TGG + chr7_3:13096551-13096570 None:intergenic 30.0%
ACTGAATAAACTTCTAACTC+TGG - chr7_3:13096605-13096624 Msa1093330:CDS 30.0%
! CATTGAGTTGTTCTTTCATT+TGG + chr7_3:13096700-13096719 None:intergenic 30.0%
AATGAAAGAACAACTCAATG+CGG - chr7_3:13096700-13096719 Msa1093330:CDS 30.0%
AAAGAAGGAAGCAACCTATT+AGG - chr7_3:13093120-13093139 Msa1093330:three_prime_UTR 35.0%
TGAATTTCGGTGAACCTAAT+AGG + chr7_3:13093137-13093156 None:intergenic 35.0%
ATTAGGTTCACCGAAATTCA+AGG - chr7_3:13093137-13093156 Msa1093330:three_prime_UTR 35.0%
TCACCGAAATTCAAGGAAAT+CGG - chr7_3:13093144-13093163 Msa1093330:three_prime_UTR 35.0%
! AGAGTAAAAGGGTATGTCTT+TGG + chr7_3:13093214-13093233 None:intergenic 35.0%
TTAATCAAGATCCTCTTTGC+CGG - chr7_3:13093304-13093323 Msa1093330:three_prime_UTR 35.0%
! ATGTAAGTTGACTGGTCATA+AGG - chr7_3:13093436-13093455 Msa1093330:three_prime_UTR 35.0%
! CATATTTGGAAGCATATGAC+TGG - chr7_3:13093476-13093495 Msa1093330:three_prime_UTR 35.0%
GTTGTAGGATTAGATCAATG+TGG - chr7_3:13093584-13093603 Msa1093330:intron 35.0%
ATAAGCTCTCCAATTTAGCT+TGG - chr7_3:13093743-13093762 Msa1093330:CDS 35.0%
!!! GCTGTTTTTCCAAGCTAAAT+TGG + chr7_3:13093755-13093774 None:intergenic 35.0%
! TTGGATGCTTTAGATATCCA+TGG - chr7_3:13094115-13094134 Msa1093330:intron 35.0%
TATATGTGTCTGTGTCGTAT+CGG - chr7_3:13094343-13094362 Msa1093330:intron 35.0%
! AATTGGGCCAATCGTAATTT+TGG + chr7_3:13094496-13094515 None:intergenic 35.0%
TCCATCCACTAATACTAGTA+GGG + chr7_3:13094569-13094588 None:intergenic 35.0%
ATCCATCCACTAATACTAGT+AGG + chr7_3:13094570-13094589 None:intergenic 35.0%
CAGGAAGAAGGAATTGAAAA+TGG - chr7_3:13094831-13094850 Msa1093330:CDS 35.0%
AGTTAGGAAGTCTTCTAATG+AGG - chr7_3:13094989-13095008 Msa1093330:CDS 35.0%
AGAAGACACAGGATGAAAAT+AGG - chr7_3:13095291-13095310 Msa1093330:intron 35.0%
GCATCTAGCTGTTTATGTTT+CGG + chr7_3:13095344-13095363 None:intergenic 35.0%
ATTGTTATAACAAAGGCCGA+AGG - chr7_3:13095398-13095417 Msa1093330:intron 35.0%
ATAATAGGAGTTAAGGACAG+AGG + chr7_3:13095656-13095675 None:intergenic 35.0%
GAATAAAACAGGGAAAGACA+AGG + chr7_3:13095790-13095809 None:intergenic 35.0%
ACAACGAACCATGTTTAGTT+TGG - chr7_3:13095906-13095925 Msa1093330:intron 35.0%
TGCTGAAGTAAAATACCTTG+AGG + chr7_3:13096122-13096141 None:intergenic 35.0%
! TTTTTGTTCTGCTGGGTATA+AGG + chr7_3:13096233-13096252 None:intergenic 35.0%
! TTTCTAGAAGCAAAGCTACT+GGG + chr7_3:13096276-13096295 None:intergenic 35.0%
TGACGAGACTTGATATATGT+TGG - chr7_3:13096314-13096333 Msa1093330:intron 35.0%
TTATGAAACAATGCGGATTC+GGG - chr7_3:13096400-13096419 Msa1093330:intron 35.0%
CTCACACAAAACTACTGAAA+AGG + chr7_3:13096472-13096491 None:intergenic 35.0%
! AGCTTTTGTTCTGTTGTGAT+TGG - chr7_3:13096638-13096657 Msa1093330:CDS 35.0%
CTTTCATTTGGCATTACATG+AGG + chr7_3:13096688-13096707 None:intergenic 35.0%
ATGAAAGAACAACTCAATGC+GGG - chr7_3:13096701-13096720 Msa1093330:CDS 35.0%
CTATGAGACTTAACAACATG+GGG + chr7_3:13096741-13096760 None:intergenic 35.0%
CCTATGAGACTTAACAACAT+GGG + chr7_3:13096742-13096761 None:intergenic 35.0%
CCATGTTGTTAAGTCTCATA+GGG - chr7_3:13096740-13096759 Msa1093330:CDS 35.0%
CTTAGATTTCTCCGTTATGG+CGG - chr7_3:13093047-13093066 Msa1093330:three_prime_UTR 40.0%
! ACCAATAACCAACTTGTTCG+CGG + chr7_3:13093388-13093407 None:intergenic 40.0%
GACTGAAAACCTATGAAGCA+CGG - chr7_3:13094239-13094258 Msa1093330:intron 40.0%
TGTCAAATTACTAGCGGTGT+TGG + chr7_3:13094294-13094313 None:intergenic 40.0%
AGGTTGTCAACTATGAAGCA+CGG + chr7_3:13094399-13094418 None:intergenic 40.0%
TGGAGGACCAAAATTACGAT+TGG - chr7_3:13094486-13094505 Msa1093330:intron 40.0%
TAATACTAGTAGGGAAACCG+AGG + chr7_3:13094560-13094579 None:intergenic 40.0%
GGTTTCCCTACTAGTATTAG+TGG - chr7_3:13094561-13094580 Msa1093330:intron 40.0%
TCCCTACTAGTATTAGTGGA+TGG - chr7_3:13094565-13094584 Msa1093330:intron 40.0%
TCTCTATCGTCTATGAAGAC+CGG + chr7_3:13094713-13094732 None:intergenic 40.0%
TAAACAGAGCAACAGGAAGA+AGG - chr7_3:13094819-13094838 Msa1093330:CDS 40.0%
ATCGATGGTCTTCAGATTCA+GGG - chr7_3:13095084-13095103 Msa1093330:intron 40.0%
TGTAACTGCTAGTAACCACT+AGG - chr7_3:13095595-13095614 Msa1093330:intron 40.0%
ATAGGCTCTCAAATTCCTAG+TGG + chr7_3:13095613-13095632 None:intergenic 40.0%
CAGAATTGTGACAAAGACCT+AGG + chr7_3:13095972-13095991 None:intergenic 40.0%
AGTCAGAAGAGTTATCCTCA+AGG - chr7_3:13096104-13096123 Msa1093330:intron 40.0%
! GACAGTCTTTTTGTTCTGCT+GGG + chr7_3:13096240-13096259 None:intergenic 40.0%
! TGACAGTCTTTTTGTTCTGC+TGG + chr7_3:13096241-13096260 None:intergenic 40.0%
! CTTTCTAGAAGCAAAGCTAC+TGG + chr7_3:13096277-13096296 None:intergenic 40.0%
! AAGCCAAGTTTTGCAGCAAT+AGG - chr7_3:13096344-13096363 Msa1093330:CDS 40.0%
TCACCTATTGCTGCAAAACT+TGG + chr7_3:13096350-13096369 None:intergenic 40.0%
! GCACTCTTTTCGACGAATAT+AGG + chr7_3:13096666-13096685 None:intergenic 40.0%
CCCATGTTGTTAAGTCTCAT+AGG - chr7_3:13096739-13096758 Msa1093330:CDS 40.0%
CCCTATGAGACTTAACAACA+TGG + chr7_3:13096743-13096762 None:intergenic 40.0%
AGAGTATGAACTCACATGAG+TGG - chr7_3:13096773-13096792 Msa1093330:exon 40.0%
AGTGTATCCGAATACTCATG+TGG - chr7_3:13096796-13096815 Msa1093330:five_prime_UTR 40.0%
CGATTCAAATGCGTAGAGAC+AGG - chr7_3:13093174-13093193 Msa1093330:three_prime_UTR 45.0%
CGAAGAAATTACCGGCAAAG+AGG + chr7_3:13093318-13093337 None:intergenic 45.0%
!! ACCGCGAACAAGTTGGTTAT+TGG - chr7_3:13093384-13093403 Msa1093330:three_prime_UTR 45.0%
TGTCTGTATCCGTGCTTCAT+AGG + chr7_3:13094251-13094270 None:intergenic 45.0%
ATTGTCCATCCGTTACCATC+TGG - chr7_3:13094466-13094485 Msa1093330:intron 45.0%
TTTGGTCCTCCAGATGGTAA+CGG + chr7_3:13094478-13094497 None:intergenic 45.0%
!! CGTAATTTTGGTCCTCCAGA+TGG + chr7_3:13094484-13094503 None:intergenic 45.0%
TGGATGGATCCAGTTCTCTT+CGG - chr7_3:13094581-13094600 Msa1093330:intron 45.0%
TCTCTGCAATCATGCAGTTG+TGG + chr7_3:13094737-13094756 None:intergenic 45.0%
GAGCAGCAAAGTGTAGATTG+TGG - chr7_3:13094867-13094886 Msa1093330:CDS 45.0%
TGAGGAAAGTGAGACAGAAG+AGG - chr7_3:13095007-13095026 Msa1093330:intron 45.0%
AGACAGAAGAGGAAGACTTC+TGG - chr7_3:13095018-13095037 Msa1093330:intron 45.0%
GATCGATGGTCTTCAGATTC+AGG - chr7_3:13095083-13095102 Msa1093330:intron 45.0%
! TTCCGGTTCTGACTCTGAAT+CGG + chr7_3:13095111-13095130 None:intergenic 45.0%
GCTGAAGAAGGGGATGTAAT+TGG - chr7_3:13095131-13095150 Msa1093330:intron 45.0%
AAGACACTCGAATTTCTCGG+AGG + chr7_3:13095760-13095779 None:intergenic 45.0%
TCCGAGAAATTCGAGTGTCT+TGG - chr7_3:13095759-13095778 Msa1093330:intron 45.0%
CCCAAGACACTCGAATTTCT+CGG + chr7_3:13095763-13095782 None:intergenic 45.0%
CCGAGAAATTCGAGTGTCTT+GGG - chr7_3:13095760-13095779 Msa1093330:intron 45.0%
! TGTAGATGGTGATGCTGATG+TGG - chr7_3:13096072-13096091 Msa1093330:intron 45.0%
! TGATGCTGATGTGGATTGCA+AGG - chr7_3:13096081-13096100 Msa1093330:intron 45.0%
!! GGGTCTCATCGATTTCGCTT+TGG - chr7_3:13093254-13093273 Msa1093330:three_prime_UTR 50.0%
! TAACCAACTTGTTCGCGGTG+CGG + chr7_3:13093383-13093402 None:intergenic 50.0%
! TGTCTGTGTCGTATCGGTGT+GGG - chr7_3:13094349-13094368 Msa1093330:intron 50.0%
TATGAAGCACGGACACTCCT+CGG + chr7_3:13094388-13094407 None:intergenic 50.0%
TGGATCCAGTTCTCTTCGGT+TGG - chr7_3:13094585-13094604 Msa1093330:intron 50.0%
GGATCCAGTTCTCTTCGGTT+GGG - chr7_3:13094586-13094605 Msa1093330:intron 50.0%
TTAGCCCAACCGAAGAGAAC+TGG + chr7_3:13094593-13094612 None:intergenic 50.0%
AACACCAGCTCACACAGTCA+AGG - chr7_3:13094612-13094631 Msa1093330:intron 50.0%
ACACCAGCTCACACAGTCAA+GGG - chr7_3:13094613-13094632 Msa1093330:intron 50.0%
AGTCAAGGGATCTCGACTGT+TGG - chr7_3:13094627-13094646 Msa1093330:intron 50.0%
GTCCGATTCAGAGTCAGAAC+CGG - chr7_3:13095106-13095125 Msa1093330:intron 50.0%
TCAGAACCGGAAGCTGAAGA+AGG - chr7_3:13095119-13095138 Msa1093330:intron 50.0%
CAGAACCGGAAGCTGAAGAA+GGG - chr7_3:13095120-13095139 Msa1093330:intron 50.0%
AGAACCGGAAGCTGAAGAAG+GGG - chr7_3:13095121-13095140 Msa1093330:intron 50.0%
ACATCCCCTTCTTCAGCTTC+CGG + chr7_3:13095128-13095147 None:intergenic 50.0%
TAAGGACAGAGGCAGGGATT+GGG + chr7_3:13095645-13095664 None:intergenic 50.0%
TTAAGGACAGAGGCAGGGAT+TGG + chr7_3:13095646-13095665 None:intergenic 50.0%
AGGAGTTAAGGACAGAGGCA+GGG + chr7_3:13095651-13095670 None:intergenic 50.0%
TAGGAGTTAAGGACAGAGGC+AGG + chr7_3:13095652-13095671 None:intergenic 50.0%
! AACTTGTTCGCGGTGCGGTT+TGG + chr7_3:13093378-13093397 None:intergenic 55.0%
AAACCGCACCGCGAACAAGT+TGG - chr7_3:13093377-13093396 Msa1093330:three_prime_UTR 55.0%
! GTGTCTGTGTCGTATCGGTG+TGG - chr7_3:13094348-13094367 Msa1093330:intron 55.0%
! TCGTATCGGTGTGGGATACG+CGG - chr7_3:13094357-13094376 Msa1093330:intron 55.0%
GTCCATCCGTTACCATCTGG+AGG - chr7_3:13094469-13094488 Msa1093330:intron 55.0%
!! GTCCTCCAGATGGTAACGGA+TGG + chr7_3:13094474-13094493 None:intergenic 55.0%
GATCCCTTGACTGTGTGAGC+TGG + chr7_3:13094619-13094638 None:intergenic 55.0%
GAACGCTGGGACAACGATGA+CGG - chr7_3:13095056-13095075 Msa1093330:intron 55.0%
!! ACGATGACGGAGGAGATCGA+TGG - chr7_3:13095069-13095088 Msa1093330:intron 55.0%
!! GGGATTGGGTTGGGAGAGAT+AGG + chr7_3:13095631-13095650 None:intergenic 55.0%
ACAGAGGCAGGGATTGGGTT+GGG + chr7_3:13095640-13095659 None:intergenic 55.0%
! CTCCGTTATGGCGGAGACGA+CGG - chr7_3:13093056-13093075 Msa1093330:three_prime_UTR 60.0%
! GTTCGCGGTGCGGTTTGGAT+CGG + chr7_3:13093373-13093392 None:intergenic 60.0%
TGGCGTGTCAGTGTCGTGTC+TGG + chr7_3:13094274-13094293 None:intergenic 60.0%
TGGGATACGCGGCAAATCCG+AGG - chr7_3:13094368-13094387 Msa1093330:intron 60.0%
GACTTCTGGATGCCTCCTGC+TGG - chr7_3:13095032-13095051 Msa1093330:intron 60.0%
TTGTCCCAGCGTTCTCCAGC+AGG + chr7_3:13095050-13095069 None:intergenic 60.0%
GACAGAGGCAGGGATTGGGT+TGG + chr7_3:13095641-13095660 None:intergenic 60.0%
CGCCGTCGTCTCCGCCATAA+CGG + chr7_3:13093061-13093080 None:intergenic 65.0%
! CGTTATGGCGGAGACGACGG+CGG - chr7_3:13093059-13093078 Msa1093330:three_prime_UTR 65.0%
TGCCTCCTGCTGGAGAACGC+TGG - chr7_3:13095042-13095061 Msa1093330:intron 65.0%
GCCTCCTGCTGGAGAACGCT+GGG - chr7_3:13095043-13095062 Msa1093330:intron 65.0%
TCCCAGCGTTCTCCAGCAGG+AGG + chr7_3:13095047-13095066 None:intergenic 65.0%
! CGCTGGGACAACGATGACGG+AGG - chr7_3:13095059-13095078 Msa1093330:intron 65.0%
! TATGGCGGAGACGACGGCGG+AGG - chr7_3:13093062-13093081 Msa1093330:three_prime_UTR 70.0%
GGAGGTGGAGGTGGCGACGA+CGG - chr7_3:13093080-13093099 Msa1093330:three_prime_UTR 70.0%
GGAGACGACGGCGGAGGTGG+AGG - chr7_3:13093068-13093087 Msa1093330:three_prime_UTR 75.0%
GACGACGGCGGAGGTGGAGG+TGG - chr7_3:13093071-13093090 Msa1093330:three_prime_UTR 75.0%
GGTGGAGGTGGCGACGACGG+AGG - chr7_3:13093083-13093102 Msa1093330:three_prime_UTR 75.0%
! GGCGGAGACGACGGCGGAGG+TGG - chr7_3:13093065-13093084 Msa1093330:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 13092985 13096857 13092985 ID=Msa1093330;Name=Msa1093330
chr7_3 mRNA 13092985 13096857 13092985 ID=Msa1093330-mRNA-1;Parent=Msa1093330;Name=Msa1093330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=78|1|0.8|1|1|1|5|531|273
chr7_3 exon 13092985 13093600 13092985 ID=Msa1093330-mRNA-1:exon:3085;Parent=Msa1093330-mRNA-1
chr7_3 exon 13093717 13093765 13093717 ID=Msa1093330-mRNA-1:exon:3084;Parent=Msa1093330-mRNA-1
chr7_3 exon 13094690 13095016 13094690 ID=Msa1093330-mRNA-1:exon:3083;Parent=Msa1093330-mRNA-1
chr7_3 exon 13096321 13096418 13096321 ID=Msa1093330-mRNA-1:exon:3082;Parent=Msa1093330-mRNA-1
chr7_3 exon 13096517 13096857 13096517 ID=Msa1093330-mRNA-1:exon:3081;Parent=Msa1093330-mRNA-1
chr7_3 five_prime_UTR 13096780 13096857 13096780 ID=Msa1093330-mRNA-1:five_prime_utr;Parent=Msa1093330-mRNA-1
chr7_3 CDS 13096517 13096779 13096517 ID=Msa1093330-mRNA-1:cds;Parent=Msa1093330-mRNA-1
chr7_3 CDS 13096321 13096418 13096321 ID=Msa1093330-mRNA-1:cds;Parent=Msa1093330-mRNA-1
chr7_3 CDS 13094690 13095016 13094690 ID=Msa1093330-mRNA-1:cds;Parent=Msa1093330-mRNA-1
chr7_3 CDS 13093717 13093765 13093717 ID=Msa1093330-mRNA-1:cds;Parent=Msa1093330-mRNA-1
chr7_3 CDS 13093516 13093600 13093516 ID=Msa1093330-mRNA-1:cds;Parent=Msa1093330-mRNA-1
chr7_3 three_prime_UTR 13092985 13093515 13092985 ID=Msa1093330-mRNA-1:three_prime_utr;Parent=Msa1093330-mRNA-1
Gene Sequence

>Msa1093330

ATGGCGGAGACGACGGCGGAGGTGGAGGTGGCGACGACGGAGGAAAATGTTAAGCAGAAAGAAGGAAGCAACCTATTAGGTTCACCGAAATTCAAGGAAATCGGAAACGGTCGATTCAAATGCGTAGAGACAGGTCACGAAGTACTCTCCAAAGACATACCCTTTTACTCTAACAGTAAAAAATGTCGTTTGGGTCTCATCGATTTCGCTTTGGCTAATAATAAATCTCCTCTTAATATGTTTAATCAAGATCCTCTTTGCCGTTCGAAGTTGATATGTAAGTTGACTGGTCATAAGGTTAATAAGTCAGAGGAACATATTTGGAAGCATATGACTGGGAAAAGATTTCTCAATAAATTAGAGCAACAGGAAGAAGGAATTGAAAATGGCGAGAGCTTGCAAGAGCAGCAAAGTGTAGATTGTGGAACGAAAGCTGAAATGAAGAAGAAGAATAAGCAAAAGAACAAGAAGAAAAAGAAGACAAAGAAGAAGAAAGATAAGAGAGTTGAAGAACTTATTTCTGAAGTTAGGAAGTCTTCTAATGAGGAAAGTGAGACAGAAGAGGAAGACTTCTGGATGCCTCCTGCTGGAGAACGCTGGGACAACGATGACGGAGGAGATCGATGGTCTTCAGATTCAGGGTCCGATTCAGAGTCAGAACCGGAAGCTGAAGAAGGGGATGTAATTGATGGTGATGCTGATGTGGATTGCAAGGAGTCAGAAGAGTTATCCTCAAGCAGAACAAAAAGACTGTCAATAGAAGTTGGACCCAGTAGCTTTGCTTCTAGAAAGAAGAAAAGCAAGAAGAATGACGAGACTTGA

Protein sequence

>Msa1093330

MAETTAEVEVATTEENVKQKEGSNLLGSPKFKEIGNGRFKCVETGHEVLSKDIPFYSNSKKCRLGLIDFALANNKSPLNMFNQDPLCRSKLICKLTGHKVNKSEEHIWKHMTGKRFLNKLEQQEEGIENGESLQEQQSVDCGTKAEMKKKNKQKNKKKKKTKKKKDKRVEELISEVRKSSNEESETEEEDFWMPPAGERWDNDDGGDRWSSDSGSDSESEPEAEEGDVIDGDADVDCKESEELSSSRTKRLSIEVGPSSFASRKKKSKKNDET*