AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0109590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109590 MtrunA17_Chr1g0166481 97.080 274 8 0 1 274 1 274 0.0 553
Msa0109590 MtrunA17_Chr1g0187481 60.432 278 106 1 1 274 1 278 1.60e-120 345
Msa0109590 MtrunA17_Chr8g0360351 38.281 256 128 6 41 273 33 281 1.58e-39 139
Msa0109590 MtrunA17_Chr2g0279151 34.831 267 144 6 30 273 21 280 2.24e-34 125
Msa0109590 MtrunA17_Chr4g0050381 32.857 280 158 6 17 273 4 276 2.94e-34 125
Msa0109590 MtrunA17_Chr2g0317021 36.328 256 133 6 41 273 84 332 3.76e-33 123
Msa0109590 MtrunA17_Chr5g0426141 36.283 226 119 5 71 273 58 281 2.51e-32 120
Msa0109590 MtrunA17_Chr3g0115851 33.628 226 125 5 71 273 58 281 3.92e-28 108
Msa0109590 MtrunA17_Chr4g0051661 32.031 256 143 5 41 273 150 397 1.09e-24 101
Msa0109590 MtrunA17_Chr1g0150451 28.837 215 132 3 80 273 109 323 4.67e-24 99.4
Msa0109590 MtrunA17_Chr3g0136711 28.372 215 133 3 80 273 66 280 6.05e-23 95.5
Msa0109590 MtrunA17_Chr1g0212961 29.954 217 127 8 79 274 126 338 4.05e-17 80.1
Msa0109590 MtrunA17_Chr3g0126511 26.840 231 144 5 67 274 113 341 8.07e-14 70.5
Msa0109590 MtrunA17_Chr5g0407161 26.104 249 148 9 59 273 99 345 2.58e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109590 AT3G23360.1 43.369 279 132 7 1 273 1 259 1.48e-70 218
Msa0109590 AT2G20630.1 34.375 256 138 5 41 273 30 278 1.44e-37 134
Msa0109590 AT4G28400.3 35.206 267 142 6 30 273 2 260 2.28e-37 133
Msa0109590 AT4G28400.1 35.547 256 135 5 41 273 34 282 3.25e-37 133
Msa0109590 AT2G20630.2 33.984 256 139 5 41 273 30 278 2.77e-35 128
Msa0109590 AT3G15260.2 33.574 277 153 7 20 273 20 288 3.52e-34 125
Msa0109590 AT3G15260.1 33.574 277 153 7 20 273 20 288 3.52e-34 125
Msa0109590 AT1G22280.1 34.222 225 123 4 72 273 58 280 1.45e-29 113
Msa0109590 AT1G22280.3 33.766 231 122 5 72 273 58 286 8.44e-29 111
Msa0109590 AT1G78200.5 35.111 225 118 6 75 273 15 237 2.48e-28 108
Msa0109590 AT1G78200.4 35.111 225 118 6 75 273 15 237 2.48e-28 108
Msa0109590 AT1G78200.1 34.274 248 135 6 52 273 37 282 2.53e-28 110
Msa0109590 AT1G78200.3 34.274 248 135 6 52 273 37 282 2.53e-28 110
Msa0109590 AT1G78200.2 34.274 248 135 6 52 273 37 282 2.53e-28 110
Msa0109590 AT1G34750.2 30.851 282 170 5 15 273 2 281 3.74e-27 107
Msa0109590 AT1G34750.1 30.851 282 170 5 15 273 2 281 3.74e-27 107
Msa0109590 AT1G34750.3 30.851 282 170 5 15 273 2 281 3.74e-27 107
Msa0109590 AT4G31750.1 28.837 215 132 3 80 273 65 279 1.47e-24 100
Msa0109590 AT4G31750.3 28.837 215 132 3 80 273 65 279 1.47e-24 100
Msa0109590 AT4G31750.2 28.837 215 132 3 80 273 65 279 1.50e-24 100
Msa0109590 AT2G34740.1 29.412 255 148 5 43 273 88 334 7.80e-23 96.3
Msa0109590 AT5G24940.1 29.224 219 132 5 77 273 62 279 8.69e-23 97.4
Msa0109590 AT4G28400.2 33.333 213 112 5 41 230 34 239 1.23e-20 88.6
Msa0109590 AT5G10740.1 26.512 215 137 3 80 273 65 279 2.35e-20 89.7
Msa0109590 AT5G10740.2 26.512 215 137 3 80 273 65 279 2.35e-20 89.7
Msa0109590 AT5G53140.1 26.512 215 137 3 80 273 133 347 1.19e-16 79.7
Msa0109590 AT5G53140.2 26.512 215 137 3 80 273 133 347 1.19e-16 79.7
Msa0109590 AT2G34740.3 27.830 212 121 5 43 230 84 287 1.91e-12 66.6
Msa0109590 AT2G34740.2 27.830 212 121 5 43 230 102 305 2.06e-12 66.6
Msa0109590 AT1G34750.4 27.615 239 148 5 15 230 2 238 4.04e-11 62.0
Msa0109590 AT3G51470.2 22.857 245 160 6 57 273 40 283 4.04e-11 62.8
Msa0109590 AT3G51470.1 22.634 243 159 6 59 273 86 327 5.14e-11 62.8

Find 50 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTGGCTTGCAAATATT+TGG 0.170520 1_3:+21666406 None:intergenic
GAGATTCTTGTCAAAATAAT+TGG 0.178491 1_3:+21666391 None:intergenic
TGCTCTCTTGAGTGTGTCTT+TGG 0.251664 1_3:+21665748 None:intergenic
ACATCTGTGATGATAATAAA+TGG 0.273873 1_3:-21665659 Msa0109590:CDS
TGATAAGATTCACTGCTTCT+TGG 0.281632 1_3:+21664628 None:intergenic
AACTTGTGGTTGGAAGTTAT+TGG 0.296396 1_3:-21664908 Msa0109590:CDS
GTGGAGCATGATTGGATTAA+TGG 0.347520 1_3:-21666539 Msa0109590:CDS
GAATGATTAAACATGAAATA+TGG 0.349116 1_3:+21664535 None:intergenic
TAGTACTGAATTTGTGATCT+TGG 0.359368 1_3:-21664877 Msa0109590:CDS
CTTAGGAATCTTTGATACTT+TGG 0.361268 1_3:-21666444 Msa0109590:CDS
TCTGTGATACCAATGTTTCT+TGG 0.370921 1_3:+21665541 None:intergenic
ACATGATGACCATGTGATAT+TGG 0.373026 1_3:+21666563 None:intergenic
ATATTTCATGTTTAATCATT+CGG 0.384965 1_3:-21664533 Msa0109590:CDS
AAGAAGCAGTGAATCTTATC+AGG 0.393702 1_3:-21664626 Msa0109590:CDS
TCAGATGAAACATGCATCAT+AGG 0.400144 1_3:-21665686 Msa0109590:CDS
GGAATCTTTGATACTTTGGT+TGG 0.403046 1_3:-21666440 Msa0109590:CDS
ACAAGAAGCAGCAGAGTGTT+TGG 0.405610 1_3:-21664589 Msa0109590:CDS
AGGGTGAAACTCTCATGTTT+AGG 0.405777 1_3:-21666641 Msa0109590:CDS
TCTTGGCAAGCAATGGCATA+TGG 0.410623 1_3:-21664860 Msa0109590:CDS
ATCATGTAGTGGAGCATGAT+TGG 0.430792 1_3:-21666547 Msa0109590:CDS
GGTGTAGCTTATCAGACAAT+TGG 0.432674 1_3:-21665581 Msa0109590:CDS
GTGATACAAAGAGAGCAAAT+TGG 0.443813 1_3:-21666485 Msa0109590:CDS
GTAAGAAGAAATCATGGAGT+TGG 0.448595 1_3:-21666608 Msa0109590:CDS
TTGACTTGCACAGGCACTTA+GGG 0.454166 1_3:-21666660 Msa0109590:intron
AGAAAGGTAAGAAGAAATCA+TGG 0.465978 1_3:-21666614 Msa0109590:CDS
GATTATGTTAGTCTCATTTG+AGG 0.470058 1_3:-21665778 Msa0109590:intron
TGGCTAAGGAAGCATTGGTT+AGG 0.478204 1_3:-21664569 Msa0109590:CDS
TGTGAATCAGGTAATGCAAC+AGG 0.482738 1_3:-21664954 Msa0109590:intron
ATTGACTTGCACAGGCACTT+AGG 0.483823 1_3:-21666661 Msa0109590:intron
AGCAGCAGAGTGTTTGGCTA+AGG 0.497684 1_3:-21664583 Msa0109590:CDS
GAGACAGAATTGTGGTACTT+AGG 0.501693 1_3:-21666461 Msa0109590:CDS
TTCTAAAGCTTCAGAACTTG+TGG 0.505454 1_3:-21664922 Msa0109590:CDS
AAAGCTTCAGAACTTGTGGT+TGG 0.510242 1_3:-21664918 Msa0109590:CDS
AAACACTCTGCTGCTTCTTG+TGG 0.521856 1_3:+21664591 None:intergenic
CTTGGCAAGCAATGGCATAT+GGG 0.527736 1_3:-21664859 Msa0109590:CDS
CTCATGTTTAGGAAATAGAA+AGG 0.530586 1_3:-21666630 Msa0109590:CDS
GTGTTTGGCTAAGGAAGCAT+TGG 0.535898 1_3:-21664574 Msa0109590:CDS
ATCAATCATCCAAGAAACAT+TGG 0.538131 1_3:-21665550 Msa0109590:CDS
GAGTTGGAAGCAAGCCATCA+TGG 0.546613 1_3:-21666592 Msa0109590:CDS
GAATCTTATCAGGCACATAG+AGG 0.593854 1_3:-21664616 Msa0109590:CDS
AGTTCTGTAATCTCCGATGT+TGG 0.599281 1_3:+21665619 None:intergenic
AGGTAATGCAACAGGTACAA+AGG 0.604493 1_3:-21664946 Msa0109590:CDS
TTTGTGATCTTGGCAAGCAA+TGG 0.607158 1_3:-21664867 Msa0109590:CDS
ATCACATGGTCATCATGTAG+TGG 0.616220 1_3:-21666558 Msa0109590:CDS
GATATTGGCATCATCCATGA+TGG 0.650715 1_3:+21666578 None:intergenic
AAACTCGTGCTAGCCAACAT+CGG 0.656947 1_3:-21665632 Msa0109590:CDS
GGCAAGCAATGGCATATGGG+AGG 0.662078 1_3:-21664856 Msa0109590:intron
ACACTCAAGAGAGCATACCT+AGG 0.689445 1_3:-21665740 Msa0109590:CDS
TGGATGATGCCAATATCACA+TGG 0.692201 1_3:-21666572 Msa0109590:CDS
AAATTGGTGAGACAGAATTG+TGG 0.696148 1_3:-21666469 Msa0109590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGAAAACAAATATTTAA+GGG - chr1_3:21664617-21664636 Msa0109590:CDS 10.0%
!! TTAGAAATTTCTTAATAAAT+CGG - chr1_3:21666640-21666659 Msa0109590:CDS 10.0%
!!! TCGTTTTTTTAAAAATAAAT+AGG - chr1_3:21666671-21666690 Msa0109590:intron 10.0%
!! ATAAGAAAACAAATATTTAA+GGG - chr1_3:21664617-21664636 Msa0109590:CDS 10.0%
!! TTAGAAATTTCTTAATAAAT+CGG - chr1_3:21666640-21666659 Msa0109590:CDS 10.0%
!!! TCGTTTTTTTAAAAATAAAT+AGG - chr1_3:21666671-21666690 Msa0109590:intron 10.0%
!! CATAAGAAAACAAATATTTA+AGG - chr1_3:21664616-21664635 Msa0109590:CDS 15.0%
!! TTTAAGGGAAAAATAATATA+TGG - chr1_3:21664632-21664651 Msa0109590:CDS 15.0%
!! AGTGTTTATGTATTTATTTA+AGG - chr1_3:21665223-21665242 Msa0109590:intron 15.0%
!! TACTTTAATGAAAAGTAAAA+GGG - chr1_3:21665470-21665489 Msa0109590:intron 15.0%
!! GATAAAATAGGAAATTATAT+CGG + chr1_3:21665535-21665554 None:intergenic 15.0%
!! ATATTTCATGTTTAATCATT+CGG - chr1_3:21666843-21666862 Msa0109590:CDS 15.0%
!! CATAAGAAAACAAATATTTA+AGG - chr1_3:21664616-21664635 Msa0109590:CDS 15.0%
!! TTTAAGGGAAAAATAATATA+TGG - chr1_3:21664632-21664651 Msa0109590:CDS 15.0%
!! AGTGTTTATGTATTTATTTA+AGG - chr1_3:21665223-21665242 Msa0109590:intron 15.0%
!! TACTTTAATGAAAAGTAAAA+GGG - chr1_3:21665470-21665489 Msa0109590:intron 15.0%
!! GATAAAATAGGAAATTATAT+CGG + chr1_3:21665535-21665554 None:intergenic 15.0%
!! ATATTTCATGTTTAATCATT+CGG - chr1_3:21666843-21666862 Msa0109590:CDS 15.0%
!!! ATTTAACTTTTCCAAAACTT+GGG - chr1_3:21665105-21665124 Msa0109590:intron 20.0%
!! GTACTTTAATGAAAAGTAAA+AGG - chr1_3:21665469-21665488 Msa0109590:intron 20.0%
!! TAATATTGTTATATTGAGAG+AGG + chr1_3:21666296-21666315 None:intergenic 20.0%
!!! TAACTCAGAAATTTTTCTAA+CGG + chr1_3:21666586-21666605 None:intergenic 20.0%
!! GAATGATTAAACATGAAATA+TGG + chr1_3:21666844-21666863 None:intergenic 20.0%
!!! ATTTAACTTTTCCAAAACTT+GGG - chr1_3:21665105-21665124 Msa0109590:intron 20.0%
!! GTACTTTAATGAAAAGTAAA+AGG - chr1_3:21665469-21665488 Msa0109590:intron 20.0%
!! TAATATTGTTATATTGAGAG+AGG + chr1_3:21666296-21666315 None:intergenic 20.0%
!!! TAACTCAGAAATTTTTCTAA+CGG + chr1_3:21666586-21666605 None:intergenic 20.0%
!! GAATGATTAAACATGAAATA+TGG + chr1_3:21666844-21666863 None:intergenic 20.0%
! TGAAGAACATAATCTCATAA+GGG + chr1_3:21664664-21664683 None:intergenic 25.0%
! ATGAAGAACATAATCTCATA+AGG + chr1_3:21664665-21664684 None:intergenic 25.0%
!!! ATAATTGGCTTGCAAATATT+TGG + chr1_3:21664973-21664992 None:intergenic 25.0%
! GAGATTCTTGTCAAAATAAT+TGG + chr1_3:21664988-21665007 None:intergenic 25.0%
!!! AATCAAAAGCATCATTGATT+TGG + chr1_3:21665073-21665092 None:intergenic 25.0%
!! AAATCAATGATGCTTTTGAT+TGG - chr1_3:21665072-21665091 Msa0109590:intron 25.0%
!!! GATTTAACTTTTCCAAAACT+TGG - chr1_3:21665104-21665123 Msa0109590:intron 25.0%
! TTTGAATGGAAGAACAAAAT+AGG - chr1_3:21665133-21665152 Msa0109590:intron 25.0%
!! TCTATTTTCATAAGCTATCA+TGG - chr1_3:21665287-21665306 Msa0109590:intron 25.0%
! TGGATATAAGATGAAAACTA+TGG - chr1_3:21665318-21665337 Msa0109590:intron 25.0%
! GTCTTTGCTTGTTTATTTAT+TGG - chr1_3:21665445-21665464 Msa0109590:intron 25.0%
! ACATCTGTGATGATAATAAA+TGG - chr1_3:21665717-21665736 Msa0109590:CDS 25.0%
! TTTAGTTGTTTATCGAAACA+CGG + chr1_3:21665954-21665973 None:intergenic 25.0%
!!! TTCCATCTTTTTCATTCAAT+TGG - chr1_3:21666242-21666261 Msa0109590:intron 25.0%
!!! TCCATCTTTTTCATTCAATT+GGG - chr1_3:21666243-21666262 Msa0109590:intron 25.0%
!! CTATAAGTGAGTATATGTTT+TGG - chr1_3:21666346-21666365 Msa0109590:intron 25.0%
! TTGGTTGTCACATTTAATAA+TGG - chr1_3:21666365-21666384 Msa0109590:intron 25.0%
! AGTTAACATCAACATATCTT+GGG + chr1_3:21666551-21666570 None:intergenic 25.0%
! AAGTTAACATCAACATATCT+TGG + chr1_3:21666552-21666571 None:intergenic 25.0%
! TGAAGAACATAATCTCATAA+GGG + chr1_3:21664664-21664683 None:intergenic 25.0%
! ATGAAGAACATAATCTCATA+AGG + chr1_3:21664665-21664684 None:intergenic 25.0%
!!! ATAATTGGCTTGCAAATATT+TGG + chr1_3:21664973-21664992 None:intergenic 25.0%
! GAGATTCTTGTCAAAATAAT+TGG + chr1_3:21664988-21665007 None:intergenic 25.0%
!!! AATCAAAAGCATCATTGATT+TGG + chr1_3:21665073-21665092 None:intergenic 25.0%
!! AAATCAATGATGCTTTTGAT+TGG - chr1_3:21665072-21665091 Msa0109590:intron 25.0%
!!! GATTTAACTTTTCCAAAACT+TGG - chr1_3:21665104-21665123 Msa0109590:intron 25.0%
! TTTGAATGGAAGAACAAAAT+AGG - chr1_3:21665133-21665152 Msa0109590:intron 25.0%
!! TCTATTTTCATAAGCTATCA+TGG - chr1_3:21665287-21665306 Msa0109590:intron 25.0%
! TGGATATAAGATGAAAACTA+TGG - chr1_3:21665318-21665337 Msa0109590:intron 25.0%
! GTCTTTGCTTGTTTATTTAT+TGG - chr1_3:21665445-21665464 Msa0109590:intron 25.0%
! ACATCTGTGATGATAATAAA+TGG - chr1_3:21665717-21665736 Msa0109590:CDS 25.0%
! TTTAGTTGTTTATCGAAACA+CGG + chr1_3:21665954-21665973 None:intergenic 25.0%
!!! TTCCATCTTTTTCATTCAAT+TGG - chr1_3:21666242-21666261 Msa0109590:intron 25.0%
!!! TCCATCTTTTTCATTCAATT+GGG - chr1_3:21666243-21666262 Msa0109590:intron 25.0%
!! CTATAAGTGAGTATATGTTT+TGG - chr1_3:21666346-21666365 Msa0109590:intron 25.0%
! TTGGTTGTCACATTTAATAA+TGG - chr1_3:21666365-21666384 Msa0109590:intron 25.0%
! AGTTAACATCAACATATCTT+GGG + chr1_3:21666551-21666570 None:intergenic 25.0%
! AAGTTAACATCAACATATCT+TGG + chr1_3:21666552-21666571 None:intergenic 25.0%
! AGATTTTCACTTCAAAGTCA+AGG - chr1_3:21664535-21664554 Msa0109590:CDS 30.0%
CTTATTCCATTGTTACATGA+AGG - chr1_3:21664581-21664600 Msa0109590:CDS 30.0%
!!! GAATTTTTATTGACTTGCAC+AGG - chr1_3:21664707-21664726 Msa0109590:intron 30.0%
CTCATGTTTAGGAAATAGAA+AGG - chr1_3:21664746-21664765 Msa0109590:intron 30.0%
AGAAAGGTAAGAAGAAATCA+TGG - chr1_3:21664762-21664781 Msa0109590:intron 30.0%
CTTAGGAATCTTTGATACTT+TGG - chr1_3:21664932-21664951 Msa0109590:CDS 30.0%
! TTTTGACAAGAATCTCAAAG+AGG - chr1_3:21664992-21665011 Msa0109590:intron 30.0%
AAGCTATCATGGAAAGTTTA+TGG - chr1_3:21665298-21665317 Msa0109590:intron 30.0%
GCAATAAATCACAATGCATT+TGG + chr1_3:21665497-21665516 None:intergenic 30.0%
! CCAGAAGCATATGATAAAAT+AGG + chr1_3:21665547-21665566 None:intergenic 30.0%
! CCTATTTTATCATATGCTTC+TGG - chr1_3:21665544-21665563 Msa0109590:CDS 30.0%
! GATTATGTTAGTCTCATTTG+AGG - chr1_3:21665598-21665617 Msa0109590:CDS 30.0%
ATCAATCATCCAAGAAACAT+TGG - chr1_3:21665826-21665845 Msa0109590:intron 30.0%
ATGTCTATGACGATTCATTT+AGG - chr1_3:21665908-21665927 Msa0109590:intron 30.0%
TAAGCTGTGAAAATAGCTTA+TGG - chr1_3:21666073-21666092 Msa0109590:intron 30.0%
! CATAAGAATTTGAGATGGTT+TGG + chr1_3:21666129-21666148 None:intergenic 30.0%
ACTGTCATAAGAATTTGAGA+TGG + chr1_3:21666134-21666153 None:intergenic 30.0%
ATCTCAAATTCTTATGACAG+TGG - chr1_3:21666133-21666152 Msa0109590:intron 30.0%
TCCCAATTGAATGAAAAAGA+TGG + chr1_3:21666247-21666266 None:intergenic 30.0%
! TAGTACTGAATTTGTGATCT+TGG - chr1_3:21666499-21666518 Msa0109590:CDS 30.0%
! TTCTGAGTTAAACATTTTCG+AGG - chr1_3:21666596-21666615 Msa0109590:CDS 30.0%
TCATCACCTACAAAATACAT+AGG + chr1_3:21666724-21666743 None:intergenic 30.0%
! AGATTTTCACTTCAAAGTCA+AGG - chr1_3:21664535-21664554 Msa0109590:CDS 30.0%
CTTATTCCATTGTTACATGA+AGG - chr1_3:21664581-21664600 Msa0109590:CDS 30.0%
!!! GAATTTTTATTGACTTGCAC+AGG - chr1_3:21664707-21664726 Msa0109590:intron 30.0%
CTCATGTTTAGGAAATAGAA+AGG - chr1_3:21664746-21664765 Msa0109590:intron 30.0%
AGAAAGGTAAGAAGAAATCA+TGG - chr1_3:21664762-21664781 Msa0109590:intron 30.0%
CTTAGGAATCTTTGATACTT+TGG - chr1_3:21664932-21664951 Msa0109590:CDS 30.0%
! TTTTGACAAGAATCTCAAAG+AGG - chr1_3:21664992-21665011 Msa0109590:intron 30.0%
AAGCTATCATGGAAAGTTTA+TGG - chr1_3:21665298-21665317 Msa0109590:intron 30.0%
GCAATAAATCACAATGCATT+TGG + chr1_3:21665497-21665516 None:intergenic 30.0%
! CCAGAAGCATATGATAAAAT+AGG + chr1_3:21665547-21665566 None:intergenic 30.0%
! CCTATTTTATCATATGCTTC+TGG - chr1_3:21665544-21665563 Msa0109590:CDS 30.0%
! GATTATGTTAGTCTCATTTG+AGG - chr1_3:21665598-21665617 Msa0109590:CDS 30.0%
ATCAATCATCCAAGAAACAT+TGG - chr1_3:21665826-21665845 Msa0109590:intron 30.0%
ATGTCTATGACGATTCATTT+AGG - chr1_3:21665908-21665927 Msa0109590:intron 30.0%
TAAGCTGTGAAAATAGCTTA+TGG - chr1_3:21666073-21666092 Msa0109590:intron 30.0%
! CATAAGAATTTGAGATGGTT+TGG + chr1_3:21666129-21666148 None:intergenic 30.0%
ACTGTCATAAGAATTTGAGA+TGG + chr1_3:21666134-21666153 None:intergenic 30.0%
ATCTCAAATTCTTATGACAG+TGG - chr1_3:21666133-21666152 Msa0109590:intron 30.0%
TCCCAATTGAATGAAAAAGA+TGG + chr1_3:21666247-21666266 None:intergenic 30.0%
! TAGTACTGAATTTGTGATCT+TGG - chr1_3:21666499-21666518 Msa0109590:CDS 30.0%
! TTCTGAGTTAAACATTTTCG+AGG - chr1_3:21666596-21666615 Msa0109590:CDS 30.0%
TCATCACCTACAAAATACAT+AGG + chr1_3:21666724-21666743 None:intergenic 30.0%
AAAGAGCCTTCATGTAACAA+TGG + chr1_3:21664590-21664609 None:intergenic 35.0%
GTAAGAAGAAATCATGGAGT+TGG - chr1_3:21664768-21664787 Msa0109590:intron 35.0%
ACATGATGACCATGTGATAT+TGG + chr1_3:21664816-21664835 None:intergenic 35.0%
GTGATACAAAGAGAGCAAAT+TGG - chr1_3:21664891-21664910 Msa0109590:CDS 35.0%
AAATTGGTGAGACAGAATTG+TGG - chr1_3:21664907-21664926 Msa0109590:CDS 35.0%
GGAATCTTTGATACTTTGGT+TGG - chr1_3:21664936-21664955 Msa0109590:CDS 35.0%
! TTCAAAAGTCTCCCAAGTTT+TGG + chr1_3:21665119-21665138 None:intergenic 35.0%
! AAACTTGGGAGACTTTTGAA+TGG - chr1_3:21665119-21665138 Msa0109590:intron 35.0%
TTACTTAGCTACAAACAGGA+AGG + chr1_3:21665174-21665193 None:intergenic 35.0%
!!! TGATCTTTGTTTTTGCACCT+AGG + chr1_3:21665656-21665675 None:intergenic 35.0%
TCAGATGAAACATGCATCAT+AGG - chr1_3:21665690-21665709 Msa0109590:CDS 35.0%
! AGAACTGTTTTGTGTAGAGA+TGG - chr1_3:21665774-21665793 Msa0109590:intron 35.0%
TCTGTGATACCAATGTTTCT+TGG + chr1_3:21665838-21665857 None:intergenic 35.0%
!!! TGGTATCACAGACTTTTTTC+AGG - chr1_3:21665846-21665865 Msa0109590:intron 35.0%
ATGACGATTCATTTAGGAGA+TGG - chr1_3:21665914-21665933 Msa0109590:intron 35.0%
! AGATGGTTTGGAAGAACTTA+TGG + chr1_3:21666117-21666136 None:intergenic 35.0%
AATCCAAACAAACCCTAAGT+AGG - chr1_3:21666177-21666196 Msa0109590:intron 35.0%
!! ACTGATTTGTGTCCTACTTA+GGG + chr1_3:21666192-21666211 None:intergenic 35.0%
!! AACTGATTTGTGTCCTACTT+AGG + chr1_3:21666193-21666212 None:intergenic 35.0%
!! TTCTAAAGCTTCAGAACTTG+TGG - chr1_3:21666454-21666473 Msa0109590:CDS 35.0%
AACTTGTGGTTGGAAGTTAT+TGG - chr1_3:21666468-21666487 Msa0109590:CDS 35.0%
! GAGTCTCCTATGTATTTTGT+AGG - chr1_3:21666715-21666734 Msa0109590:intron 35.0%
TGATAAGATTCACTGCTTCT+TGG + chr1_3:21666751-21666770 None:intergenic 35.0%
AAGAAGCAGTGAATCTTATC+AGG - chr1_3:21666750-21666769 Msa0109590:intron 35.0%
AAAGAGCCTTCATGTAACAA+TGG + chr1_3:21664590-21664609 None:intergenic 35.0%
GTAAGAAGAAATCATGGAGT+TGG - chr1_3:21664768-21664787 Msa0109590:intron 35.0%
ACATGATGACCATGTGATAT+TGG + chr1_3:21664816-21664835 None:intergenic 35.0%
GTGATACAAAGAGAGCAAAT+TGG - chr1_3:21664891-21664910 Msa0109590:CDS 35.0%
AAATTGGTGAGACAGAATTG+TGG - chr1_3:21664907-21664926 Msa0109590:CDS 35.0%
GGAATCTTTGATACTTTGGT+TGG - chr1_3:21664936-21664955 Msa0109590:CDS 35.0%
! TTCAAAAGTCTCCCAAGTTT+TGG + chr1_3:21665119-21665138 None:intergenic 35.0%
! AAACTTGGGAGACTTTTGAA+TGG - chr1_3:21665119-21665138 Msa0109590:intron 35.0%
TTACTTAGCTACAAACAGGA+AGG + chr1_3:21665174-21665193 None:intergenic 35.0%
!!! TGATCTTTGTTTTTGCACCT+AGG + chr1_3:21665656-21665675 None:intergenic 35.0%
TCAGATGAAACATGCATCAT+AGG - chr1_3:21665690-21665709 Msa0109590:CDS 35.0%
! AGAACTGTTTTGTGTAGAGA+TGG - chr1_3:21665774-21665793 Msa0109590:intron 35.0%
TCTGTGATACCAATGTTTCT+TGG + chr1_3:21665838-21665857 None:intergenic 35.0%
!!! TGGTATCACAGACTTTTTTC+AGG - chr1_3:21665846-21665865 Msa0109590:intron 35.0%
ATGACGATTCATTTAGGAGA+TGG - chr1_3:21665914-21665933 Msa0109590:intron 35.0%
! AGATGGTTTGGAAGAACTTA+TGG + chr1_3:21666117-21666136 None:intergenic 35.0%
AATCCAAACAAACCCTAAGT+AGG - chr1_3:21666177-21666196 Msa0109590:intron 35.0%
!! ACTGATTTGTGTCCTACTTA+GGG + chr1_3:21666192-21666211 None:intergenic 35.0%
!! AACTGATTTGTGTCCTACTT+AGG + chr1_3:21666193-21666212 None:intergenic 35.0%
!! TTCTAAAGCTTCAGAACTTG+TGG - chr1_3:21666454-21666473 Msa0109590:CDS 35.0%
AACTTGTGGTTGGAAGTTAT+TGG - chr1_3:21666468-21666487 Msa0109590:CDS 35.0%
! GAGTCTCCTATGTATTTTGT+AGG - chr1_3:21666715-21666734 Msa0109590:intron 35.0%
TGATAAGATTCACTGCTTCT+TGG + chr1_3:21666751-21666770 None:intergenic 35.0%
AAGAAGCAGTGAATCTTATC+AGG - chr1_3:21666750-21666769 Msa0109590:intron 35.0%
AGGGTGAAACTCTCATGTTT+AGG - chr1_3:21664735-21664754 Msa0109590:intron 40.0%
GATATTGGCATCATCCATGA+TGG + chr1_3:21664801-21664820 None:intergenic 40.0%
TGGATGATGCCAATATCACA+TGG - chr1_3:21664804-21664823 Msa0109590:intron 40.0%
ATCACATGGTCATCATGTAG+TGG - chr1_3:21664818-21664837 Msa0109590:intron 40.0%
! ATCATGTAGTGGAGCATGAT+TGG - chr1_3:21664829-21664848 Msa0109590:intron 40.0%
GTGGAGCATGATTGGATTAA+TGG - chr1_3:21664837-21664856 Msa0109590:intron 40.0%
GAGACAGAATTGTGGTACTT+AGG - chr1_3:21664915-21664934 Msa0109590:CDS 40.0%
GCTCTTACTTAGCTACAAAC+AGG + chr1_3:21665178-21665197 None:intergenic 40.0%
AGTCGCACAAGTACTTATGT+CGG - chr1_3:21665377-21665396 Msa0109590:intron 40.0%
AGTTCTGTAATCTCCGATGT+TGG + chr1_3:21665760-21665779 None:intergenic 40.0%
GGTGTAGCTTATCAGACAAT+TGG - chr1_3:21665795-21665814 Msa0109590:intron 40.0%
AGTTGTTTATCGAAACACGG+CGG + chr1_3:21665951-21665970 None:intergenic 40.0%
! TGTCCTACTTAGGGTTTGTT+TGG + chr1_3:21666183-21666202 None:intergenic 40.0%
ACTAATTCAGTGCTGCATTC+TGG + chr1_3:21666223-21666242 None:intergenic 40.0%
GAAGTAACAGCATGTGAATC+AGG - chr1_3:21666410-21666429 Msa0109590:CDS 40.0%
TGTGAATCAGGTAATGCAAC+AGG - chr1_3:21666422-21666441 Msa0109590:CDS 40.0%
AGGTAATGCAACAGGTACAA+AGG - chr1_3:21666430-21666449 Msa0109590:CDS 40.0%
AAAGCTTCAGAACTTGTGGT+TGG - chr1_3:21666458-21666477 Msa0109590:CDS 40.0%
TTTGTGATCTTGGCAAGCAA+TGG - chr1_3:21666509-21666528 Msa0109590:CDS 40.0%
GAATCTTATCAGGCACATAG+AGG - chr1_3:21666760-21666779 Msa0109590:intron 40.0%
AGGGTGAAACTCTCATGTTT+AGG - chr1_3:21664735-21664754 Msa0109590:intron 40.0%
GATATTGGCATCATCCATGA+TGG + chr1_3:21664801-21664820 None:intergenic 40.0%
TGGATGATGCCAATATCACA+TGG - chr1_3:21664804-21664823 Msa0109590:intron 40.0%
ATCACATGGTCATCATGTAG+TGG - chr1_3:21664818-21664837 Msa0109590:intron 40.0%
! ATCATGTAGTGGAGCATGAT+TGG - chr1_3:21664829-21664848 Msa0109590:intron 40.0%
GTGGAGCATGATTGGATTAA+TGG - chr1_3:21664837-21664856 Msa0109590:intron 40.0%
GAGACAGAATTGTGGTACTT+AGG - chr1_3:21664915-21664934 Msa0109590:CDS 40.0%
GCTCTTACTTAGCTACAAAC+AGG + chr1_3:21665178-21665197 None:intergenic 40.0%
AGTCGCACAAGTACTTATGT+CGG - chr1_3:21665377-21665396 Msa0109590:intron 40.0%
AGTTCTGTAATCTCCGATGT+TGG + chr1_3:21665760-21665779 None:intergenic 40.0%
GGTGTAGCTTATCAGACAAT+TGG - chr1_3:21665795-21665814 Msa0109590:intron 40.0%
AGTTGTTTATCGAAACACGG+CGG + chr1_3:21665951-21665970 None:intergenic 40.0%
! TGTCCTACTTAGGGTTTGTT+TGG + chr1_3:21666183-21666202 None:intergenic 40.0%
ACTAATTCAGTGCTGCATTC+TGG + chr1_3:21666223-21666242 None:intergenic 40.0%
GAAGTAACAGCATGTGAATC+AGG - chr1_3:21666410-21666429 Msa0109590:CDS 40.0%
TGTGAATCAGGTAATGCAAC+AGG - chr1_3:21666422-21666441 Msa0109590:CDS 40.0%
AGGTAATGCAACAGGTACAA+AGG - chr1_3:21666430-21666449 Msa0109590:CDS 40.0%
AAAGCTTCAGAACTTGTGGT+TGG - chr1_3:21666458-21666477 Msa0109590:CDS 40.0%
TTTGTGATCTTGGCAAGCAA+TGG - chr1_3:21666509-21666528 Msa0109590:CDS 40.0%
GAATCTTATCAGGCACATAG+AGG - chr1_3:21666760-21666779 Msa0109590:intron 40.0%
!! ATTGACTTGCACAGGCACTT+AGG - chr1_3:21664715-21664734 Msa0109590:intron 45.0%
!! TTGACTTGCACAGGCACTTA+GGG - chr1_3:21664716-21664735 Msa0109590:intron 45.0%
TGCTCTCTTGAGTGTGTCTT+TGG + chr1_3:21665631-21665650 None:intergenic 45.0%
! ACACTCAAGAGAGCATACCT+AGG - chr1_3:21665636-21665655 Msa0109590:CDS 45.0%
AAACTCGTGCTAGCCAACAT+CGG - chr1_3:21665744-21665763 Msa0109590:CDS 45.0%
TCTTGGCAAGCAATGGCATA+TGG - chr1_3:21666516-21666535 Msa0109590:CDS 45.0%
CTTGGCAAGCAATGGCATAT+GGG - chr1_3:21666517-21666536 Msa0109590:CDS 45.0%
! AAACACTCTGCTGCTTCTTG+TGG + chr1_3:21666788-21666807 None:intergenic 45.0%
! ACAAGAAGCAGCAGAGTGTT+TGG - chr1_3:21666787-21666806 Msa0109590:intron 45.0%
! GTGTTTGGCTAAGGAAGCAT+TGG - chr1_3:21666802-21666821 Msa0109590:intron 45.0%
!! TGGCTAAGGAAGCATTGGTT+AGG - chr1_3:21666807-21666826 Msa0109590:intron 45.0%
!! ATTGACTTGCACAGGCACTT+AGG - chr1_3:21664715-21664734 Msa0109590:intron 45.0%
!! TTGACTTGCACAGGCACTTA+GGG - chr1_3:21664716-21664735 Msa0109590:intron 45.0%
TGCTCTCTTGAGTGTGTCTT+TGG + chr1_3:21665631-21665650 None:intergenic 45.0%
! ACACTCAAGAGAGCATACCT+AGG - chr1_3:21665636-21665655 Msa0109590:CDS 45.0%
AAACTCGTGCTAGCCAACAT+CGG - chr1_3:21665744-21665763 Msa0109590:CDS 45.0%
TCTTGGCAAGCAATGGCATA+TGG - chr1_3:21666516-21666535 Msa0109590:CDS 45.0%
CTTGGCAAGCAATGGCATAT+GGG - chr1_3:21666517-21666536 Msa0109590:CDS 45.0%
! AAACACTCTGCTGCTTCTTG+TGG + chr1_3:21666788-21666807 None:intergenic 45.0%
! ACAAGAAGCAGCAGAGTGTT+TGG - chr1_3:21666787-21666806 Msa0109590:intron 45.0%
! GTGTTTGGCTAAGGAAGCAT+TGG - chr1_3:21666802-21666821 Msa0109590:intron 45.0%
!! TGGCTAAGGAAGCATTGGTT+AGG - chr1_3:21666807-21666826 Msa0109590:intron 45.0%
GAGTTGGAAGCAAGCCATCA+TGG - chr1_3:21664784-21664803 Msa0109590:intron 50.0%
! AGCAGCAGAGTGTTTGGCTA+AGG - chr1_3:21666793-21666812 Msa0109590:intron 50.0%
GAGTTGGAAGCAAGCCATCA+TGG - chr1_3:21664784-21664803 Msa0109590:intron 50.0%
! AGCAGCAGAGTGTTTGGCTA+AGG - chr1_3:21666793-21666812 Msa0109590:intron 50.0%
GGCAAGCAATGGCATATGGG+AGG - chr1_3:21666520-21666539 Msa0109590:CDS 55.0%
GGCAAGCAATGGCATATGGG+AGG - chr1_3:21666520-21666539 Msa0109590:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 21664524 21666874 21664524 ID=Msa0109590;Name=Msa0109590
chr1_3 mRNA 21664524 21666874 21664524 ID=Msa0109590-mRNA-1;Parent=Msa0109590;Name=Msa0109590-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.2|1|1|1|5|0|274
chr1_3 exon 21666842 21666874 21666842 ID=Msa0109590-mRNA-1:exon:7791;Parent=Msa0109590-mRNA-1
chr1_3 exon 21666385 21666669 21666385 ID=Msa0109590-mRNA-1:exon:7790;Parent=Msa0109590-mRNA-1
chr1_3 exon 21665531 21665789 21665531 ID=Msa0109590-mRNA-1:exon:7789;Parent=Msa0109590-mRNA-1
chr1_3 exon 21664857 21664966 21664857 ID=Msa0109590-mRNA-1:exon:7788;Parent=Msa0109590-mRNA-1
chr1_3 exon 21664524 21664661 21664524 ID=Msa0109590-mRNA-1:exon:7787;Parent=Msa0109590-mRNA-1
chr1_3 CDS 21666842 21666874 21666842 ID=Msa0109590-mRNA-1:cds;Parent=Msa0109590-mRNA-1
chr1_3 CDS 21666385 21666669 21666385 ID=Msa0109590-mRNA-1:cds;Parent=Msa0109590-mRNA-1
chr1_3 CDS 21665531 21665789 21665531 ID=Msa0109590-mRNA-1:cds;Parent=Msa0109590-mRNA-1
chr1_3 CDS 21664857 21664966 21664857 ID=Msa0109590-mRNA-1:cds;Parent=Msa0109590-mRNA-1
chr1_3 CDS 21664524 21664661 21664524 ID=Msa0109590-mRNA-1:cds;Parent=Msa0109590-mRNA-1
Gene Sequence

>Msa0109590

ATGGGAATGAGAGATTTTCACTTCAAAGTCAAGGCACTTAGGGTGAAACTCTCATGTTTAGGAAATAGAAAGGTAAGAAGAAATCATGGAGTTGGAAGCAAGCCATCATGGATGATGCCAATATCACATGGTCATCATGTAGTGGAGCATGATTGGATTAATGGTGATTCTGATGACTCTGAGTTTGATTCAGTTGTGATACAAAGAGAGCAAATTGGTGAGACAGAATTGTGGTACTTAGGAATCTTTGATACTTTGGTTGGAGATTGTGTTACCAAATATTTGCAAGCCAATTATTTTGACAAGAATCTCAAAGAGTCTCATTTGAGGAGAAAAGCCAAAGACACACTCAAGAGAGCATACCTAGGTGCAAAAACAAAGATCAGAGAGACACACAAATCAGATGAAACATGCATCATAGGTTCAACATCTGTGATGATAATAAATGGAGAAAAACTCGTGCTAGCCAACATCGGAGATTACAGAACTGTTTTGTGTAGAGATGGTGTAGCTTATCAGACAATTGGAAAGCACAATCAATCATCCAAGAAACATTGGTATCACAGACTTTTTTCAGGTAATGCAACAGGTACAAAGGCTTCTAAAGCTTCAGAACTTGTGGTTGGAAGTTATTGGATTGACTCTAGTACTGAATTTGTGATCTTGGCAAGCAATGGCATATGGGAGGTGATGAAGAACCAAGAAGCAGTGAATCTTATCAGGCACATAGAGGATCCACAAGAAGCAGCAGAGTGTTTGGCTAAGGAAGCATTGGTTAGGATGAGCAGAAGCCATATTTCATGTTTAATCATTCGGTTTGATTGA

Protein sequence

>Msa0109590

MGMRDFHFKVKALRVKLSCLGNRKVRRNHGVGSKPSWMMPISHGHHVVEHDWINGDSDDSEFDSVVIQREQIGETELWYLGIFDTLVGDCVTKYLQANYFDKNLKESHLRRKAKDTLKRAYLGAKTKIRETHKSDETCIIGSTSVMIINGEKLVLANIGDYRTVLCRDGVAYQTIGKHNQSSKKHWYHRLFSGNATGTKASKASELVVGSYWIDSSTEFVILASNGIWEVMKNQEAVNLIRHIEDPQEAAECLAKEALVRMSRSHISCLIIRFD*