AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0087360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087360 MtrunA17_Chr1g0204121 98.431 510 8 0 1 510 1 510 0.0 1051
Msa0087360 MtrunA17_Chr1g0204141 91.634 514 38 2 1 510 1 513 0.0 980
Msa0087360 MtrunA17_Chr4g0042711 39.355 465 256 12 29 477 38 492 6.00e-98 305
Msa0087360 MtrunA17_Chr5g0417871 37.161 479 264 12 29 485 19 482 4.61e-91 286
Msa0087360 MtrunA17_Chr5g0426591 36.281 441 244 9 61 476 85 513 4.01e-89 283
Msa0087360 MtrunA17_Chr3g0143821 39.302 430 246 10 61 484 82 502 4.06e-89 284
Msa0087360 MtrunA17_Chr3g0129981 39.140 442 233 10 61 479 88 516 1.51e-88 281
Msa0087360 MtrunA17_Chr4g0070551 39.310 435 229 11 61 476 201 619 1.91e-88 283
Msa0087360 MtrunA17_Chr4g0056061 41.176 391 219 6 88 475 108 490 1.08e-86 276
Msa0087360 MtrunA17_Chr2g0307971 38.835 412 237 7 73 473 100 507 1.20e-85 273
Msa0087360 MtrunA17_Chr5g0412251 36.123 454 246 11 58 475 57 502 4.44e-85 271
Msa0087360 MtrunA17_Chr4g0061781 40.191 418 210 12 82 473 105 508 6.67e-85 271
Msa0087360 MtrunA17_Chr6g0455571 40.587 409 226 8 72 467 98 502 7.24e-85 271
Msa0087360 MtrunA17_Chr5g0399311 42.276 369 206 5 88 455 124 486 1.10e-84 271
Msa0087360 MtrunA17_Chr5g0436321 40.494 405 210 11 88 475 161 551 1.90e-84 271
Msa0087360 MtrunA17_Chr3g0132371 36.735 441 245 9 60 478 114 542 3.40e-84 270
Msa0087360 MtrunA17_Chr5g0448581 37.705 427 244 10 61 478 90 503 3.54e-84 271
Msa0087360 MtrunA17_Chr4g0008451 37.327 434 241 10 61 477 205 624 6.14e-84 272
Msa0087360 MtrunA17_Chr3g0132951 36.052 466 253 13 49 476 59 517 1.60e-83 268
Msa0087360 MtrunA17_Chr3g0123521 35.321 436 256 10 62 476 119 549 2.81e-82 265
Msa0087360 MtrunA17_Chr1g0160781 37.358 439 244 12 59 477 122 549 8.15e-81 261
Msa0087360 MtrunA17_Chr4g0043911 35.217 460 261 13 41 477 105 550 1.51e-78 256
Msa0087360 MtrunA17_Chr3g0077321 35.320 453 250 15 59 484 119 555 1.89e-78 256
Msa0087360 MtrunA17_Chr5g0424241 37.136 412 223 11 89 474 158 559 1.47e-72 241
Msa0087360 MtrunA17_Chr3g0087291 31.308 428 273 9 61 477 142 559 2.48e-67 226
Msa0087360 MtrunA17_Chr4g0010511 32.634 429 266 9 61 477 202 619 1.66e-65 223
Msa0087360 MtrunA17_Chr2g0284071 31.692 467 257 15 61 475 185 641 2.49e-63 218
Msa0087360 MtrunA17_Chr4g0075311 33.619 467 251 13 60 476 136 593 1.50e-62 214
Msa0087360 MtrunA17_Chr7g0220381 32.615 325 193 8 58 367 77 390 6.15e-49 179
Msa0087360 MtrunA17_Chr1g0146501 32.239 335 207 7 52 369 53 384 8.85e-46 170
Msa0087360 MtrunA17_Chr4g0003561 28.538 424 263 14 61 475 47 439 2.46e-44 162
Msa0087360 MtrunA17_Chr3g0127811 32.550 298 177 7 84 369 59 344 8.75e-41 153
Msa0087360 MtrunA17_Chr7g0240241 43.750 112 57 1 250 355 2 113 1.57e-24 99.0
Msa0087360 MtrunA17_Chr4g0002361 21.958 378 242 14 57 419 50 389 5.54e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087360 AT1G04910.1 77.626 514 108 3 1 508 1 513 0.0 816
Msa0087360 AT1G14020.1 39.750 400 223 8 88 475 91 484 1.05e-88 281
Msa0087360 AT5G35570.1 39.955 443 229 14 55 477 218 643 1.62e-87 282
Msa0087360 AT5G64600.1 37.838 444 230 12 61 476 91 516 5.92e-87 277
Msa0087360 AT4G24530.1 36.784 454 241 11 61 477 75 519 6.14e-86 275
Msa0087360 AT2G37980.1 37.808 447 245 11 49 477 187 618 6.76e-86 278
Msa0087360 AT2G03280.1 40.100 399 220 9 88 473 88 480 7.26e-86 273
Msa0087360 AT5G15740.1 40.000 405 223 9 84 473 99 498 8.77e-86 274
Msa0087360 AT4G38390.1 39.747 395 228 7 86 477 121 508 2.42e-85 274
Msa0087360 AT5G65470.1 35.575 461 251 12 54 476 52 504 4.32e-84 269
Msa0087360 AT5G01100.1 38.901 455 239 13 45 477 174 611 7.55e-84 272
Msa0087360 AT3G54100.1 36.986 438 241 11 59 477 193 614 2.22e-83 271
Msa0087360 AT1G22460.1 36.674 439 244 11 59 475 132 558 9.02e-83 268
Msa0087360 AT3G02250.1 36.062 452 257 11 49 473 52 498 2.54e-81 262
Msa0087360 AT1G20550.1 38.903 401 226 12 86 479 107 495 3.85e-81 263
Msa0087360 AT3G26370.1 35.862 435 253 10 63 476 128 557 4.10e-81 263
Msa0087360 AT2G03280.2 37.619 420 217 9 88 467 88 502 9.21e-80 258
Msa0087360 AT4G16650.2 40.816 392 219 9 88 475 122 504 1.82e-79 258
Msa0087360 AT4G16650.1 40.816 392 219 9 88 475 122 504 1.82e-79 258
Msa0087360 AT2G01480.1 36.344 454 249 15 59 487 127 565 3.90e-78 255
Msa0087360 AT1G76270.1 37.905 401 230 12 86 479 104 492 1.30e-77 254
Msa0087360 AT2G01480.2 38.832 394 203 13 59 428 127 506 2.02e-77 253
Msa0087360 AT1G35510.1 33.135 504 284 14 26 484 71 566 8.41e-77 252
Msa0087360 AT1G14970.2 35.455 440 251 14 57 475 6 433 4.90e-75 244
Msa0087360 AT1G38065.1 37.046 413 224 11 88 474 36 438 1.44e-74 243
Msa0087360 AT1G38065.2 37.046 413 224 11 88 474 26 428 1.63e-74 243
Msa0087360 AT1G14970.3 37.010 408 228 12 88 475 9 407 1.96e-74 241
Msa0087360 AT1G14970.1 35.385 455 257 14 48 475 109 553 9.80e-74 244
Msa0087360 AT1G38131.1 37.046 413 224 11 88 474 155 557 2.32e-73 243
Msa0087360 AT5G63390.1 33.411 431 259 11 60 475 132 549 1.84e-69 232
Msa0087360 AT2G44500.1 32.864 426 264 9 61 474 146 561 9.50e-69 231
Msa0087360 AT3G07900.1 31.776 428 272 9 61 477 157 575 5.55e-64 218
Msa0087360 AT1G11990.1 30.909 440 282 8 54 476 156 590 5.09e-63 216
Msa0087360 AT1G62330.1 31.466 464 262 11 60 474 193 649 7.60e-63 217
Msa0087360 AT1G29200.4 33.949 433 233 11 88 475 70 494 2.21e-59 204
Msa0087360 AT1G29200.1 33.949 433 233 11 88 475 70 494 2.21e-59 204
Msa0087360 AT1G29200.2 31.066 544 280 16 19 475 75 610 5.86e-59 206
Msa0087360 AT1G11990.2 28.333 480 285 8 51 476 138 612 1.29e-57 202
Msa0087360 AT1G29200.3 33.724 427 230 11 94 475 2 420 4.70e-57 196
Msa0087360 AT3G03810.2 33.421 380 209 10 28 369 10 383 1.09e-55 197
Msa0087360 AT3G03810.1 33.421 380 209 10 28 369 10 383 1.09e-55 197
Msa0087360 AT1G52630.1 30.140 428 261 13 55 475 40 436 7.94e-51 180
Msa0087360 AT3G30300.2 33.013 312 192 7 73 369 85 394 6.11e-48 176
Msa0087360 AT3G30300.1 33.013 312 192 7 73 369 85 394 6.11e-48 176
Msa0087360 AT3G26370.2 38.843 242 137 4 63 293 128 369 1.61e-46 167
Msa0087360 AT2G44500.2 34.470 264 160 4 61 316 146 404 5.92e-43 158
Msa0087360 AT1G52630.2 28.307 378 234 12 104 475 2 348 3.45e-36 138
Msa0087360 AT3G21190.1 24.339 378 216 15 81 439 79 405 2.33e-18 87.8
Msa0087360 AT1G51630.1 25.072 347 201 12 88 419 91 393 5.27e-18 86.7

Find 160 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATATATGTTAGATATT+TGG 0.154327 1_2:+68295607 Msa0087360:three_prime_UTR
TTGGGTGGACAATTGTCTTC+TGG 0.181926 1_2:-68295169 None:intergenic
GAAGAAATTAAAGGCATTTC+AGG 0.211451 1_2:+68292554 Msa0087360:CDS
ATTCTCCCTATCAATGAAAA+TGG 0.236334 1_2:-68295005 None:intergenic
CTTGGTCATCGCCTTTATTA+TGG 0.252041 1_2:+68294941 Msa0087360:CDS
CTAGTGACAGATGAAATTTC+TGG 0.266164 1_2:+68295587 Msa0087360:three_prime_UTR
AGTCTTTCTATACAAATTCT+TGG 0.285777 1_2:+68295113 Msa0087360:CDS
TAATAATGTAATATGTTATT+CGG 0.292591 1_2:+68295679 Msa0087360:three_prime_UTR
TGGGTGGACAATTGTCTTCT+GGG 0.294103 1_2:-68295168 None:intergenic
AAATATTCTGCATGATGAAT+TGG 0.310357 1_2:+68295201 Msa0087360:CDS
AAGGAGTTTGCATCCAATTC+AGG 0.312722 1_2:-68290490 None:intergenic
AATTGGATGCAAACTCCTTC+TGG 0.314006 1_2:+68290494 Msa0087360:CDS
CAGAATATTTAAAACATCAT+TGG 0.318046 1_2:-68295188 None:intergenic
GAAAATCTGGATCCTGTAAT+AGG 0.319863 1_2:-68295356 None:intergenic
ACAAATATGACCTGAAAATC+TGG 0.333258 1_2:-68295369 None:intergenic
TCAGTAGTATACCAACTTAT+AGG 0.339678 1_2:-68292688 None:intergenic
ATCGTCTACACAACTAAATC+AGG 0.340615 1_2:-68295472 None:intergenic
GATGTTTGACAGAAGCATTC+AGG 0.344083 1_2:-68295136 None:intergenic
ACAAGCTTGAGTGGATATAT+AGG 0.349401 1_2:+68295252 Msa0087360:exon
CAAGCTTGAGTGGATATATA+GGG 0.351376 1_2:+68295253 Msa0087360:exon
CTTTGGAGCAATGCTGATTC+CGG 0.352641 1_2:+68289561 Msa0087360:CDS
TTAGTTGTGTAGACGATAGA+AGG 0.361775 1_2:+68295478 Msa0087360:three_prime_UTR
CCTAACGGCCTCATCAAAAT+CGG 0.368288 1_2:-68295038 None:intergenic
AAAGACCGAACTCCTATTAC+AGG 0.371904 1_2:+68295344 Msa0087360:three_prime_UTR
GGAAGATCATACGGATTGAT+TGG 0.375327 1_2:+68295499 Msa0087360:three_prime_UTR
ATGGATATGTTGTCATTTGC+TGG 0.382372 1_2:+68292928 Msa0087360:CDS
TGAAAAGGGAGTAAGATAAA+TGG 0.392886 1_2:-68292740 None:intergenic
TAGTCCGAAAACCATAATAA+AGG 0.394892 1_2:-68294952 None:intergenic
TACACTAGTGCTGCCTGAAT+TGG 0.395186 1_2:+68290477 Msa0087360:CDS
TTCTCCCTATCAATGAAAAT+GGG 0.403139 1_2:-68295004 None:intergenic
TAACTCTACACCTCAACCTT+TGG 0.403900 1_2:-68292798 None:intergenic
GGAAGACACATCGGAGGATC+AGG 0.408537 1_2:+68289321 Msa0087360:CDS
TTTACCTCCTCGGGAGTCAA+TGG 0.416227 1_2:-68294478 None:intergenic
CCTTCATGTCCATACATCTT+CGG 0.416287 1_2:+68292899 Msa0087360:CDS
GGTTGTTTGCAAAGTTGCTT+GGG 0.417543 1_2:-68294916 None:intergenic
TTCAGCTAACCGGTGTGAAA+AGG 0.419566 1_2:-68292755 None:intergenic
TGTCAATTTCTTCAGCTAAC+CGG 0.425709 1_2:-68292765 None:intergenic
AAAGTTGCTTGGGCCATCAT+AGG 0.426197 1_2:-68294906 None:intergenic
TGACGGTGGAGGAGTGGTGG+TGG 0.427378 1_2:-68289061 None:intergenic
CTTGCAGCTGGAGAATTGTT+TGG 0.428527 1_2:+68294725 Msa0087360:CDS
AGAATATTTAAAACATCATT+GGG 0.428907 1_2:-68295187 None:intergenic
CATCGTCGCCGCGTTCTCAT+TGG 0.429992 1_2:+68289598 Msa0087360:CDS
CTAGGGAACAAACTTCGAAA+TGG 0.433828 1_2:-68294767 None:intergenic
CATCTCAAACCGAAGATGTA+TGG 0.438346 1_2:-68292908 None:intergenic
GGTTGACGGTGGAGGAGTGG+TGG 0.446235 1_2:-68289064 None:intergenic
TGCTCCAAAGCTCTTCTAAA+CGG 0.447361 1_2:-68289548 None:intergenic
TGACTTAGCTTCATAATATG+TGG 0.449252 1_2:-68292844 None:intergenic
AGATCCGTTTAGAAGAGCTT+TGG 0.450751 1_2:+68289544 Msa0087360:intron
CACCTCAACCTTTGGTACTC+AGG 0.452836 1_2:-68292790 None:intergenic
GTAGGTGACGGTTAGAGAAA+TGG 0.452876 1_2:-68289115 None:intergenic
AACTTATAGGAGCATCTCTA+GGG 0.453270 1_2:-68292675 None:intergenic
GTAACTATATAAGTGCCTTT+CGG 0.453428 1_2:-68295564 None:intergenic
CAACTTATAGGAGCATCTCT+AGG 0.455037 1_2:-68292676 None:intergenic
AGGTTGTTTGCAAAGTTGCT+TGG 0.455901 1_2:-68294917 None:intergenic
ATAGTACTACTCTTATTATG+TGG 0.459137 1_2:-68289176 None:intergenic
CTAACGGCCTCATCAAAATC+GGG 0.459265 1_2:-68295037 None:intergenic
CAAATAATAACAAGAGTTCA+AGG 0.463848 1_2:+68295431 Msa0087360:three_prime_UTR
GACGGTGGAGGAGTGGTGGT+GGG 0.471017 1_2:-68289060 None:intergenic
AAGAGCTTGCTGAGAACACT+AGG 0.471435 1_2:+68294822 Msa0087360:CDS
GTAATGCTTAAAACAAACTT+TGG 0.474936 1_2:+68295064 Msa0087360:CDS
AACTTTGCAAACAACCTCCT+TGG 0.484378 1_2:+68294923 Msa0087360:CDS
AGGTTCTGCTGTCGATTACA+TGG 0.485297 1_2:+68294853 Msa0087360:CDS
ATTCAAATAAGATGCTACTT+AGG 0.485356 1_2:+68295741 Msa0087360:three_prime_UTR
TTACCTCCTCGGGAGTCAAT+GGG 0.488237 1_2:-68294477 None:intergenic
TCAGCTAACCGGTGTGAAAA+GGG 0.491222 1_2:-68292754 None:intergenic
CACATTATTAGTTCTACTGA+TGG 0.493926 1_2:+68295397 Msa0087360:three_prime_UTR
TTTACATGCAGTGGTTTCCA+TGG 0.495392 1_2:+68292441 Msa0087360:intron
GGATATATAGGGGTTATTTG+TGG 0.495758 1_2:+68295264 Msa0087360:three_prime_UTR
TGGATCCTGTAATAGGAGTT+CGG 0.497705 1_2:-68295349 None:intergenic
CCATTCTGACGGTGAAGTCC+AGG 0.499200 1_2:-68289300 None:intergenic
CAGCTGGAGAATTGTTTGGT+GGG 0.499288 1_2:+68294729 Msa0087360:CDS
GTCTAAAATTTACCTTCTCA+TGG 0.499633 1_2:-68289209 None:intergenic
ATTGGGTAGAGAGCAATGTC+TGG 0.500737 1_2:+68295517 Msa0087360:three_prime_UTR
GAAAGGGCGGTTGACGGTGG+AGG 0.506219 1_2:-68289072 None:intergenic
ATCTGAGAAAGGGCGGTTGA+CGG 0.506420 1_2:-68289078 None:intergenic
ACCAGGATATATCTTGCAGC+TGG 0.508790 1_2:+68294713 Msa0087360:CDS
GCTCCTCCGAGTAAGACTAA+TGG 0.508887 1_2:+68289734 Msa0087360:intron
GGCGGTTGACGGTGGAGGAG+TGG 0.513045 1_2:-68289067 None:intergenic
CGATGACGGTCGCCAACCAC+CGG 0.513924 1_2:-68289580 None:intergenic
TCGGGAGAAACACGCTTATG+AGG 0.515335 1_2:-68295091 None:intergenic
ACTCCTTCTGGCATGATGAC+AGG 0.515369 1_2:+68290506 Msa0087360:CDS
CATTAACATCAGTTTCAAGT+AGG 0.516115 1_2:-68295709 None:intergenic
GAAGATCATACGGATTGATT+GGG 0.516279 1_2:+68295500 Msa0087360:three_prime_UTR
CATACATCTTCGGTTTGAGA+TGG 0.516387 1_2:+68292909 Msa0087360:CDS
TCCAGCTGCAAGATATATCC+TGG 0.517649 1_2:-68294714 None:intergenic
CTAGAGATGCTCCTATAAGT+TGG 0.519061 1_2:+68292677 Msa0087360:CDS
CCTGGACTTCACCGTCAGAA+TGG 0.520574 1_2:+68289300 Msa0087360:CDS
GAACTGTGATTCTCAAGTCT+AGG 0.531519 1_2:-68294785 None:intergenic
TGATGCTCTCAAGAAAATGA+AGG 0.532179 1_2:+68292708 Msa0087360:CDS
AGCTGGAGAATTGTTTGGTG+GGG 0.534335 1_2:+68294730 Msa0087360:CDS
CAGAAATTTCATCTGTCACT+AGG 0.534686 1_2:-68295586 None:intergenic
AGTGAAGAATGAGGAGCAGT+AGG 0.539856 1_2:-68289133 None:intergenic
CCGAAGATGTATGGACATGA+AGG 0.541002 1_2:-68292899 None:intergenic
CGATGTGTCTTCCATTCTGA+CGG 0.542650 1_2:-68289311 None:intergenic
AACTGTGATTCTCAAGTCTA+GGG 0.546837 1_2:-68294784 None:intergenic
GCAGCTGGAGAATTGTTTGG+TGG 0.547573 1_2:+68294728 Msa0087360:CDS
TTTAAGCATTACTTTCCTAA+CGG 0.550039 1_2:-68295053 None:intergenic
ACGATAGAAGGAAGATCATA+CGG 0.550774 1_2:+68295490 Msa0087360:three_prime_UTR
TCCACAGTAATGAACTTCTG+TGG 0.553047 1_2:+68295310 Msa0087360:three_prime_UTR
TGAGTTTACAGTGAAGAATG+AGG 0.554837 1_2:-68289142 None:intergenic
ATCGGAGGATCAGGATTCAA+AGG 0.560767 1_2:+68289330 Msa0087360:CDS
GCATGAAAATGTCAGAAAGA+AGG 0.561934 1_2:-68294880 None:intergenic
AAACTCTACACAAGCTTGAG+TGG 0.562467 1_2:+68295243 Msa0087360:exon
TTGCTTGGGCCATCATAGGT+TGG 0.563703 1_2:-68294902 None:intergenic
CATCAGTAGAACTAATAATG+TGG 0.565699 1_2:-68295396 None:intergenic
CCGTGTCGGAGATCTGAGAA+AGG 0.567165 1_2:-68289089 None:intergenic
GCAATGCTGATTCCGGTGGT+TGG 0.569539 1_2:+68289568 Msa0087360:CDS
ATCCTGAGTACCAAAGGTTG+AGG 0.570587 1_2:+68292788 Msa0087360:CDS
AGTCAATGGGCATTTGCCGA+TGG 0.571393 1_2:-68294464 None:intergenic
TCGTCTACACAACTAAATCA+GGG 0.577194 1_2:-68295471 None:intergenic
CTTTGATATATTTACACCTG+AGG 0.580997 1_2:+68294369 Msa0087360:CDS
AGAGCTTGCTGAGAACACTA+GGG 0.583230 1_2:+68294823 Msa0087360:CDS
ATCAGTAGAACTAATAATGT+GGG 0.583978 1_2:-68295395 None:intergenic
CATAATAAAGGCGATGACCA+AGG 0.584303 1_2:-68294940 None:intergenic
AAATAGCCATTAGTCTTACT+CGG 0.584605 1_2:-68289740 None:intergenic
TGGATATGTTGTCATTTGCT+GGG 0.589516 1_2:+68292929 Msa0087360:CDS
CCACAGTAATGAACTTCTGT+GGG 0.594147 1_2:+68295311 Msa0087360:three_prime_UTR
TTGACAATCCTGAGTACCAA+AGG 0.598187 1_2:+68292782 Msa0087360:CDS
TGAGAACGCGGCGACGATGA+CGG 0.602998 1_2:-68289594 None:intergenic
GAATGAGGAGCAGTAGGTGA+CGG 0.604973 1_2:-68289127 None:intergenic
CTCAAGAAAATGAAGGAACA+TGG 0.606285 1_2:+68292715 Msa0087360:CDS
GCTCAACATCATAGATACCA+TGG 0.609063 1_2:-68292458 None:intergenic
CGTGTCGGAGATCTGAGAAA+GGG 0.609339 1_2:-68289088 None:intergenic
TATAATGAAAGAAGAGCCAT+CGG 0.611176 1_2:+68294448 Msa0087360:CDS
TAAAATTTACCTTCTCATGG+TGG 0.612441 1_2:-68289206 None:intergenic
TCTCCCTATCAATGAAAATG+GGG 0.612552 1_2:-68295003 None:intergenic
TGAGAAAGGGCGGTTGACGG+TGG 0.614214 1_2:-68289075 None:intergenic
TAGAGAAATGGACACCGTGT+CGG 0.617302 1_2:-68289103 None:intergenic
TATTTGCGTGTTCGATGTAA+CGG 0.619867 1_2:+68289758 Msa0087360:CDS
ATTAAGTCTCCACCATGAGA+AGG 0.622750 1_2:+68289197 Msa0087360:exon
CCCACAGAAGTTCATTACTG+TGG 0.629627 1_2:-68295311 None:intergenic
ATACCTGTCATCATGCCAGA+AGG 0.634087 1_2:-68290509 None:intergenic
AGAATTTGTATAGAAAGACT+CGG 0.634296 1_2:-68295110 None:intergenic
ATATTTAAAACATCATTGGG+TGG 0.634628 1_2:-68295184 None:intergenic
TTATAGGAGCATCTCTAGGG+GGG 0.634968 1_2:-68292672 None:intergenic
GTGTACAATGTGCATCCGAA+AGG 0.637901 1_2:+68295549 Msa0087360:three_prime_UTR
GAATTTGTATAGAAAGACTC+GGG 0.640294 1_2:-68295109 None:intergenic
CTCCCTATCAATGAAAATGG+GGG 0.642427 1_2:-68295002 None:intergenic
ACTTATAGGAGCATCTCTAG+GGG 0.644818 1_2:-68292674 None:intergenic
GTTGATAAGCTACGTGCACA+AGG 0.647748 1_2:+68292874 Msa0087360:CDS
AAGCTTGAGTGGATATATAG+GGG 0.649342 1_2:+68295254 Msa0087360:exon
TGGAGCAATGCTGATTCCGG+TGG 0.651971 1_2:+68289564 Msa0087360:CDS
CGAAGATGTATGGACATGAA+GGG 0.654639 1_2:-68292898 None:intergenic
CGTCTACACAACTAAATCAG+GGG 0.655354 1_2:-68295470 None:intergenic
GTCGGAGATCTGAGAAAGGG+CGG 0.659795 1_2:-68289085 None:intergenic
TTGCGTGTTCGATGTAACGG+TGG 0.668128 1_2:+68289761 Msa0087360:CDS
CTTATAGGAGCATCTCTAGG+GGG 0.668584 1_2:-68292673 None:intergenic
CCTTTCTCAGATCTCCGACA+CGG 0.671903 1_2:+68289089 Msa0087360:five_prime_UTR
TAACGGCCTCATCAAAATCG+GGG 0.672059 1_2:-68295036 None:intergenic
CTAATGCTGTTCTTGCTGCG+CGG 0.678273 1_2:+68290443 Msa0087360:CDS
CGTCAGAATGGAAGACACAT+CGG 0.681405 1_2:+68289312 Msa0087360:CDS
ATGCCCATTGACTCCCGAGG+AGG 0.681727 1_2:+68294474 Msa0087360:CDS
GAGCTTGCTGAGAACACTAG+GGG 0.690781 1_2:+68294824 Msa0087360:CDS
CAAATGCCCATTGACTCCCG+AGG 0.706848 1_2:+68294471 Msa0087360:CDS
ATACGGGGCCAATGAGAACG+CGG 0.715796 1_2:-68289606 None:intergenic
CAGAATGGAAGACACATCGG+AGG 0.720435 1_2:+68289315 Msa0087360:CDS
AGCACTTCATTAGAACACTG+AGG 0.734261 1_2:+68292478 Msa0087360:CDS
AGCTTGCTGAGAACACTAGG+GGG 0.740298 1_2:+68294825 Msa0087360:CDS
AATAAAGGCGATGACCAAGG+AGG 0.741984 1_2:-68294937 None:intergenic
TAGCCATTAGTCTTACTCGG+AGG 0.748011 1_2:-68289737 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTGTTTATTGT+TGG + chr1_2:68289519-68289538 Msa0087360:intron 10.0%
!!! TTTTTTTTTTGTTTATTGTT+GGG + chr1_2:68289520-68289539 Msa0087360:intron 10.0%
!!! ATATTTAATTGTTTTTGTTT+TGG + chr1_2:68292265-68292284 Msa0087360:intron 10.0%
!! TAATAATGTAATATGTTATT+CGG + chr1_2:68295679-68295698 Msa0087360:three_prime_UTR 10.0%
!! AAAAATATTTCCAAAAAGAA+TGG - chr1_2:68290091-68290110 None:intergenic 15.0%
!! AAAATAATATATACCGATAT+AGG + chr1_2:68290303-68290322 Msa0087360:intron 15.0%
!!! TGTGTTTAACTTATAATAAA+AGG + chr1_2:68291285-68291304 Msa0087360:intron 15.0%
!!! TAAGTTTTAATCACATTTTT+TGG + chr1_2:68293568-68293587 Msa0087360:intron 15.0%
!!! AAGTTTTAATCACATTTTTT+GGG + chr1_2:68293569-68293588 Msa0087360:intron 15.0%
!!! AACAATTTTTTTTTTTGCAA+AGG - chr1_2:68294547-68294566 None:intergenic 15.0%
!!! AGAATATTTAAAACATCATT+GGG - chr1_2:68295190-68295209 None:intergenic 15.0%
!!! AATTTTCTGATAATGTGTTA+TGG + chr1_2:68289696-68289715 Msa0087360:intron 20.0%
!!! TTTTACAGTAAGAATGAAAA+GGG - chr1_2:68289816-68289835 None:intergenic 20.0%
!!! ATTTTACAGTAAGAATGAAA+AGG - chr1_2:68289817-68289836 None:intergenic 20.0%
!!! ATGGAATTTTATGAGTATAT+AGG + chr1_2:68289840-68289859 Msa0087360:intron 20.0%
!!! TGGAATTTTATGAGTATATA+GGG + chr1_2:68289841-68289860 Msa0087360:intron 20.0%
!!! ATTTCTTTTTTCTTGAACAT+AGG + chr1_2:68290633-68290652 Msa0087360:intron 20.0%
!!! ATTGACTTATTATTGAAACA+TGG + chr1_2:68291238-68291257 Msa0087360:intron 20.0%
!! TTGACTTATTATTGAAACAT+GGG + chr1_2:68291239-68291258 Msa0087360:intron 20.0%
!! TAACAACAAATATAACCATA+AGG - chr1_2:68291359-68291378 None:intergenic 20.0%
!!! TATATTTGTTGTTACTTCAT+TGG + chr1_2:68291365-68291384 Msa0087360:intron 20.0%
!!! ATATTTGTTGTTACTTCATT+GGG + chr1_2:68291366-68291385 Msa0087360:intron 20.0%
!!! ACTATCTTTTAACTTTATGT+GGG - chr1_2:68291860-68291879 None:intergenic 20.0%
!!! AACTATCTTTTAACTTTATG+TGG - chr1_2:68291861-68291880 None:intergenic 20.0%
!! TAAAGTTAAAAGATAGTTTC+TGG + chr1_2:68291863-68291882 Msa0087360:intron 20.0%
!! TAAATATAAGAAACTTAGTC+TGG - chr1_2:68292252-68292271 None:intergenic 20.0%
!! TTAGAATCTTATTCTGATTT+AGG + chr1_2:68292300-68292319 Msa0087360:intron 20.0%
!! TTGTTAAATTTGTGATGAAT+TGG + chr1_2:68292369-68292388 Msa0087360:intron 20.0%
!! TTCAGGTAGATTATAATATT+TGG + chr1_2:68292571-68292590 Msa0087360:intron 20.0%
!!! TTGAAATCATTTTAATTTCC+TGG + chr1_2:68292606-68292625 Msa0087360:intron 20.0%
!!! TAGTTTTTTATTTCTTACCA+AGG + chr1_2:68293353-68293372 Msa0087360:intron 20.0%
!!! AGTTTTTTATTTCTTACCAA+GGG + chr1_2:68293354-68293373 Msa0087360:intron 20.0%
!! AACATTCAAAAACAGTTTAA+GGG - chr1_2:68294028-68294047 None:intergenic 20.0%
!! AAACATTCAAAAACAGTTTA+AGG - chr1_2:68294029-68294048 None:intergenic 20.0%
!!! TTGAATGTTTTAGTTAACTT+TGG + chr1_2:68294039-68294058 Msa0087360:intron 20.0%
!! TATTTCCTTAAATATGCATT+TGG + chr1_2:68294154-68294173 Msa0087360:intron 20.0%
!! ATTTCCTTAAATATGCATTT+GGG + chr1_2:68294155-68294174 Msa0087360:intron 20.0%
!!! TATAGAATCTGTTTTATTGA+CGG + chr1_2:68294257-68294276 Msa0087360:intron 20.0%
!!! TCATTATAGACTAGTTTTTT+AGG - chr1_2:68294436-68294455 None:intergenic 20.0%
!!! AAAAAAAAATTGTTTCTGTC+TGG + chr1_2:68294553-68294572 Msa0087360:intron 20.0%
!! TATGATGCCAATAATTTAAT+TGG + chr1_2:68294624-68294643 Msa0087360:intron 20.0%
!! TCTACATCCAATTAAATTAT+TGG - chr1_2:68294634-68294653 None:intergenic 20.0%
!!! CAGAATATTTAAAACATCAT+TGG - chr1_2:68295191-68295210 None:intergenic 20.0%
! ATAGTACTACTCTTATTATG+TGG - chr1_2:68289179-68289198 None:intergenic 25.0%
!!! CAAGAGTTTTTAATTGAGTA+TGG + chr1_2:68289664-68289683 Msa0087360:intron 25.0%
! ATTCTTACTGTAAAATGTGA+TGG + chr1_2:68289821-68289840 Msa0087360:intron 25.0%
!!! CTCAATATTTAGAAGTATCT+AGG - chr1_2:68289931-68289950 None:intergenic 25.0%
! AAATACATGTATCAGTCTAT+CGG - chr1_2:68289977-68289996 None:intergenic 25.0%
! TATATCCAATACTACGATAT+TGG - chr1_2:68290048-68290067 None:intergenic 25.0%
! ATAATATATACCGATATAGG+TGG + chr1_2:68290306-68290325 Msa0087360:intron 25.0%
! TAATATATACCGATATAGGT+GGG + chr1_2:68290307-68290326 Msa0087360:intron 25.0%
!! AATTTGATGAACAAGTTTTG+CGG - chr1_2:68290575-68290594 None:intergenic 25.0%
! TTCTCAATTCTTGATTCAAA+TGG + chr1_2:68290593-68290612 Msa0087360:intron 25.0%
!! AAGCTGTTGTTATTACTATT+AGG + chr1_2:68290910-68290929 Msa0087360:intron 25.0%
! AGTCAATGTATTTAAATACG+TGG - chr1_2:68291225-68291244 None:intergenic 25.0%
! GAAGTTAAAAGATAGTTTCT+GGG + chr1_2:68291417-68291436 Msa0087360:intron 25.0%
! GCATAAATTTGTGTTTAGTT+TGG + chr1_2:68291710-68291729 Msa0087360:intron 25.0%
!!! TCATTTGTTGTTACTTCATA+GGG + chr1_2:68291813-68291832 Msa0087360:intron 25.0%
!!! CTATCTTTTAACTTTATGTG+GGG - chr1_2:68291859-68291878 None:intergenic 25.0%
!! TATCAGATGGATTTATAAGT+TGG + chr1_2:68292115-68292134 Msa0087360:intron 25.0%
!! ATCAGATGGATTTATAAGTT+GGG + chr1_2:68292116-68292135 Msa0087360:intron 25.0%
!! AACAGAAATTGTTCTACTTT+TGG + chr1_2:68292197-68292216 Msa0087360:intron 25.0%
! ATTCCAGAAAATGAGAAAAA+TGG + chr1_2:68292525-68292544 Msa0087360:CDS 25.0%
! TGGCAAAAAGAAGAAATTAA+AGG + chr1_2:68292545-68292564 Msa0087360:CDS 25.0%
!!! AAGTTTTGAACATAATATCC+AGG - chr1_2:68292627-68292646 None:intergenic 25.0%
! ATTCACATCAATTGAGATAT+AGG + chr1_2:68292983-68293002 Msa0087360:intron 25.0%
! CTTTGAATCAAAAGAAAAAC+AGG - chr1_2:68293047-68293066 None:intergenic 25.0%
!!! TTTCTTTTGATTCAAAGCTA+TGG + chr1_2:68293050-68293069 Msa0087360:intron 25.0%
!! CAATGTTTTCTGACAAAAAT+TGG - chr1_2:68293085-68293104 None:intergenic 25.0%
!!! TTGTTTCTAAACATCTCTAA+TGG + chr1_2:68293157-68293176 Msa0087360:intron 25.0%
! ACAGAAATAGAAAGAGTAAA+AGG - chr1_2:68293195-68293214 None:intergenic 25.0%
!! ATATTTCTAAACATCTCTCT+AGG + chr1_2:68293227-68293246 Msa0087360:intron 25.0%
! TTAATTATATCAAACACAGC+TGG - chr1_2:68293551-68293570 None:intergenic 25.0%
!!! ATTTTTTGGGCTTAACTTAA+AGG + chr1_2:68293582-68293601 Msa0087360:intron 25.0%
! CTTTAAACTCAACCATAAAA+TGG - chr1_2:68293701-68293720 None:intergenic 25.0%
!! CATTTTATGGTTGAGTTTAA+AGG + chr1_2:68293699-68293718 Msa0087360:intron 25.0%
! TTTGACCAAGAAATTGTATA+CGG + chr1_2:68293799-68293818 Msa0087360:intron 25.0%
!! GTTTTTCTCAAAGAATGATA+AGG + chr1_2:68293898-68293917 Msa0087360:intron 25.0%
! ATATCCCAAATGCATATTTA+AGG - chr1_2:68294162-68294181 None:intergenic 25.0%
!! AAAACTAATTTTTACCTCCT+CGG - chr1_2:68294491-68294510 None:intergenic 25.0%
! TTTAAGCATTACTTTCCTAA+CGG - chr1_2:68295056-68295075 None:intergenic 25.0%
! GTAATGCTTAAAACAAACTT+TGG + chr1_2:68295064-68295083 Msa0087360:CDS 25.0%
! AGAATTTGTATAGAAAGACT+CGG - chr1_2:68295113-68295132 None:intergenic 25.0%
! AGTCTTTCTATACAAATTCT+TGG + chr1_2:68295113-68295132 Msa0087360:CDS 25.0%
!! ATATTTAAAACATCATTGGG+TGG - chr1_2:68295187-68295206 None:intergenic 25.0%
! AAATATTCTGCATGATGAAT+TGG + chr1_2:68295201-68295220 Msa0087360:CDS 25.0%
! ATCAGTAGAACTAATAATGT+GGG - chr1_2:68295398-68295417 None:intergenic 25.0%
! CAAATAATAACAAGAGTTCA+AGG + chr1_2:68295431-68295450 Msa0087360:three_prime_UTR 25.0%
! TGGCATATATGTTAGATATT+TGG + chr1_2:68295607-68295626 Msa0087360:three_prime_UTR 25.0%
!! ATTCAAATAAGATGCTACTT+AGG + chr1_2:68295741-68295760 Msa0087360:three_prime_UTR 25.0%
TAAAATTTACCTTCTCATGG+TGG - chr1_2:68289209-68289228 None:intergenic 30.0%
! GTCTAAAATTTACCTTCTCA+TGG - chr1_2:68289212-68289231 None:intergenic 30.0%
ACTACAAGAACAGATAGATA+CGG - chr1_2:68289626-68289645 None:intergenic 30.0%
!! AAATAGCCATTAGTCTTACT+CGG - chr1_2:68289743-68289762 None:intergenic 30.0%
TACGATATTGGATACTTGAT+GGG - chr1_2:68290036-68290055 None:intergenic 30.0%
AGTATCCAATATCGTAGTAT+TGG + chr1_2:68290040-68290059 Msa0087360:intron 30.0%
! AAAGAATGGCTAAGAAGTAT+AGG - chr1_2:68290077-68290096 None:intergenic 30.0%
! TACTTCTTAGCCATTCTTTT+TGG + chr1_2:68290078-68290097 Msa0087360:intron 30.0%
! AAGATGTATCTGAGAAGTAT+AGG - chr1_2:68290115-68290134 None:intergenic 30.0%
ATCGTATTTCGACTTAGATA+TGG - chr1_2:68290215-68290234 None:intergenic 30.0%
AATATATACCGATATAGGTG+GGG + chr1_2:68290308-68290327 Msa0087360:intron 30.0%
GCTGTAGATTTATATATGTG+TGG + chr1_2:68290363-68290382 Msa0087360:intron 30.0%
GTAGATTTATATATGTGTGG+TGG + chr1_2:68290366-68290385 Msa0087360:intron 30.0%
GTAGTGATCACATTCAAATT+GGG - chr1_2:68290673-68290692 None:intergenic 30.0%
AGTAGTGATCACATTCAAAT+TGG - chr1_2:68290674-68290693 None:intergenic 30.0%
TAGGCATCTACTAACATATT+AGG + chr1_2:68290929-68290948 Msa0087360:intron 30.0%
AGTGGGTGAATAATAATCAA+CGG - chr1_2:68291040-68291059 None:intergenic 30.0%
TTGTATGGAAATCATGTAGT+GGG - chr1_2:68291057-68291076 None:intergenic 30.0%
TACATGATTTCCATACAACA+AGG + chr1_2:68291059-68291078 Msa0087360:intron 30.0%
!!! AGGAGTGCTTCTAAATTTTA+CGG - chr1_2:68291152-68291171 None:intergenic 30.0%
! ATGGGTTTTGCATAAATTTG+TGG + chr1_2:68291257-68291276 Msa0087360:intron 30.0%
!!! CTATCTTTTAACTTCGTGTT+GGG - chr1_2:68291412-68291431 None:intergenic 30.0%
!!! ACTATCTTTTAACTTCGTGT+TGG - chr1_2:68291413-68291432 None:intergenic 30.0%
CGAAGTTAAAAGATAGTTTC+TGG + chr1_2:68291416-68291435 Msa0087360:intron 30.0%
TATGCTAGGATTATTATCAG+TGG + chr1_2:68291497-68291516 Msa0087360:intron 30.0%
ATGCTAGGATTATTATCAGT+GGG + chr1_2:68291498-68291517 Msa0087360:intron 30.0%
TTTATTAAAAGATGCACCCA+AGG - chr1_2:68291544-68291563 None:intergenic 30.0%
TAAAACTAGCATTAGATGCT+TGG + chr1_2:68291648-68291667 Msa0087360:intron 30.0%
ATGGACTTCTTATTGAAACA+TGG + chr1_2:68291682-68291701 Msa0087360:intron 30.0%
AGTAACAACAAATGACCATA+AGG - chr1_2:68291808-68291827 None:intergenic 30.0%
!! GTCATTTGTTGTTACTTCAT+AGG + chr1_2:68291812-68291831 Msa0087360:intron 30.0%
TTGTGTGTAAACAATATGCT+AGG + chr1_2:68291930-68291949 Msa0087360:intron 30.0%
TATGCTAGGATTACTATCAA+TGG + chr1_2:68291944-68291963 Msa0087360:intron 30.0%
ATGCTAGGATTACTATCAAT+GGG + chr1_2:68291945-68291964 Msa0087360:intron 30.0%
! CACATTTCTGTATTTCTACA+AGG - chr1_2:68292167-68292186 None:intergenic 30.0%
! CTGGATATTCAAGTGAATTT+TGG - chr1_2:68292233-68292252 None:intergenic 30.0%
ATAAGATTCTAACTACCAAG+AGG - chr1_2:68292292-68292311 None:intergenic 30.0%
TTATTCTGATTTAGGAGAAG+AGG + chr1_2:68292308-68292327 Msa0087360:intron 30.0%
AATCTTTGCAACCATAGAAA+AGG - chr1_2:68292336-68292355 None:intergenic 30.0%
!!! TTTGTTTGTTTTACATGCAG+TGG + chr1_2:68292432-68292451 Msa0087360:intron 30.0%
!!! TTGCCATTTTTCTCATTTTC+TGG - chr1_2:68292531-68292550 None:intergenic 30.0%
!! GAAGAAATTAAAGGCATTTC+AGG + chr1_2:68292554-68292573 Msa0087360:CDS 30.0%
TCAGTAGTATACCAACTTAT+AGG - chr1_2:68292691-68292710 None:intergenic 30.0%
TGAAAAGGGAGTAAGATAAA+TGG - chr1_2:68292743-68292762 None:intergenic 30.0%
TGACTTAGCTTCATAATATG+TGG - chr1_2:68292847-68292866 None:intergenic 30.0%
TAGAAAGAGTAAAAGGACTT+TGG - chr1_2:68293188-68293207 None:intergenic 30.0%
CTTGTATAACTCTATAGCTA+TGG - chr1_2:68293448-68293467 None:intergenic 30.0%
AGAAATCACCACAATTTATG+AGG - chr1_2:68293474-68293493 None:intergenic 30.0%
CATCTCTTCTTTACAGAATA+AGG - chr1_2:68293608-68293627 None:intergenic 30.0%
! ATGAGAGAACTTCCATTTTA+TGG + chr1_2:68293686-68293705 Msa0087360:intron 30.0%
AACTGAAATCATACCTAGAT+TGG + chr1_2:68293728-68293747 Msa0087360:intron 30.0%
! AAGAATAAGTTGAGGAAAAC+AGG - chr1_2:68293869-68293888 None:intergenic 30.0%
TTACAAGCAAGAATAAGTTG+AGG - chr1_2:68293877-68293896 None:intergenic 30.0%
TGCATTAAAAAAAGTGACAG+TGG - chr1_2:68293949-68293968 None:intergenic 30.0%
AGAGAATTTCATAAACTTGC+TGG + chr1_2:68293992-68294011 Msa0087360:intron 30.0%
CTTTGATATATTTACACCTG+AGG + chr1_2:68294369-68294388 Msa0087360:CDS 30.0%
TATAATGAAAGAAGAGCCAT+CGG + chr1_2:68294448-68294467 Msa0087360:CDS 30.0%
! AAACTAATTTTTACCTCCTC+GGG - chr1_2:68294490-68294509 None:intergenic 30.0%
! ATCGCCTTTATTATGGTTTT+CGG + chr1_2:68294948-68294967 Msa0087360:CDS 30.0%
TAGTCCGAAAACCATAATAA+AGG - chr1_2:68294955-68294974 None:intergenic 30.0%
TTCTCCCTATCAATGAAAAT+GGG - chr1_2:68295007-68295026 None:intergenic 30.0%
ATTCTCCCTATCAATGAAAA+TGG - chr1_2:68295008-68295027 None:intergenic 30.0%
! ATTTTCATTGATAGGGAGAA+TGG + chr1_2:68295007-68295026 Msa0087360:CDS 30.0%
GAATTTGTATAGAAAGACTC+GGG - chr1_2:68295112-68295131 None:intergenic 30.0%
ACAAATATGACCTGAAAATC+TGG - chr1_2:68295372-68295391 None:intergenic 30.0%
CATCAGTAGAACTAATAATG+TGG - chr1_2:68295399-68295418 None:intergenic 30.0%
!! CACATTATTAGTTCTACTGA+TGG + chr1_2:68295397-68295416 Msa0087360:three_prime_UTR 30.0%
GTAACTATATAAGTGCCTTT+CGG - chr1_2:68295567-68295586 None:intergenic 30.0%
! CATTAACATCAGTTTCAAGT+AGG - chr1_2:68295712-68295731 None:intergenic 30.0%
TGAGTTTACAGTGAAGAATG+AGG - chr1_2:68289145-68289164 None:intergenic 35.0%
!! TCAATCCATTTTTCGATCAG+AGG + chr1_2:68289437-68289456 Msa0087360:CDS 35.0%
TACAAGAACAGATAGATACG+GGG - chr1_2:68289624-68289643 None:intergenic 35.0%
CTACAAGAACAGATAGATAC+GGG - chr1_2:68289625-68289644 None:intergenic 35.0%
TATTTGCGTGTTCGATGTAA+CGG + chr1_2:68289758-68289777 Msa0087360:CDS 35.0%
AACAGTGAATGCACTAAATC+AGG - chr1_2:68289881-68289900 None:intergenic 35.0%
! GATACTTGATGGGTATGTAT+TGG - chr1_2:68290026-68290045 None:intergenic 35.0%
CTACGATATTGGATACTTGA+TGG - chr1_2:68290037-68290056 None:intergenic 35.0%
TATAACTTCCCCACCTATAT+CGG - chr1_2:68290319-68290338 None:intergenic 35.0%
CAGCTAATTTCTCATAGACA+TGG - chr1_2:68290347-68290366 None:intergenic 35.0%
!! ACCCTTTAAGGTGAAATAGT+GGG + chr1_2:68290815-68290834 Msa0087360:intron 35.0%
CTCAATTGGTAGGGATATTA+CGG - chr1_2:68290873-68290892 None:intergenic 35.0%
AACTCAACAGTTTGTAGTGA+AGG + chr1_2:68290960-68290979 Msa0087360:intron 35.0%
GTTGTATGGAAATCATGTAG+TGG - chr1_2:68291058-68291077 None:intergenic 35.0%
! ACAGTTATCTCCTTGTTGTA+TGG - chr1_2:68291072-68291091 None:intergenic 35.0%
! CTAAATTTTACGGAGGAAGT+TGG - chr1_2:68291142-68291161 None:intergenic 35.0%
! AGTGCTTCTAAATTTTACGG+AGG - chr1_2:68291149-68291168 None:intergenic 35.0%
ATAAGGTCTTTCTCAATGGA+TGG - chr1_2:68291342-68291361 None:intergenic 35.0%
ATCCATTGAGAAAGACCTTA+TGG + chr1_2:68291341-68291360 Msa0087360:intron 35.0%
AACCATAAGGTCTTTCTCAA+TGG - chr1_2:68291346-68291365 None:intergenic 35.0%
ATCTGATAGCAAGTAATTGC+TGG + chr1_2:68291453-68291472 Msa0087360:intron 35.0%
TTGTGTCGAAACAATATGCT+AGG + chr1_2:68291483-68291502 Msa0087360:intron 35.0%
TGCTAGGATTATTATCAGTG+GGG + chr1_2:68291499-68291518 Msa0087360:intron 35.0%
! ATTTTCCATTCGATTGACCT+TGG + chr1_2:68291524-68291543 Msa0087360:intron 35.0%
! TTTTCCATTCGATTGACCTT+GGG + chr1_2:68291525-68291544 Msa0087360:intron 35.0%
ATGCTTGGTCATTTATCAGA+TGG + chr1_2:68291663-68291682 Msa0087360:intron 35.0%
ATAAGGTCTTTCTCAATGGA+TGG - chr1_2:68291342-68291361 None:intergenic 35.0%
ATCCATTGAGAAAGACCTTA+TGG + chr1_2:68291341-68291360 Msa0087360:intron 35.0%
ATCTGATAGCAAGTAATTGC+TGG + chr1_2:68291453-68291472 Msa0087360:intron 35.0%
TGCTAGGATTACTATCAATG+GGG + chr1_2:68291946-68291965 Msa0087360:intron 35.0%
ATTTGCCATTCACTTGACAT+TGG + chr1_2:68291971-68291990 Msa0087360:intron 35.0%
TTTGCCATTCACTTGACATT+GGG + chr1_2:68291972-68291991 Msa0087360:intron 35.0%
TTAAACTAGCATCAGATGCT+TGG + chr1_2:68292087-68292106 Msa0087360:intron 35.0%
ATGCTTGGTCATTTATCAGA+TGG + chr1_2:68291663-68291682 Msa0087360:intron 35.0%
!!! TGTTTTTGTTTTGGACCTCT+TGG + chr1_2:68292274-68292293 Msa0087360:intron 35.0%
TTCTATGGTTGCAAAGATTC+TGG + chr1_2:68292337-68292356 Msa0087360:intron 35.0%
!! AACTTATAGGAGCATCTCTA+GGG - chr1_2:68292678-68292697 None:intergenic 35.0%
TGATGCTCTCAAGAAAATGA+AGG + chr1_2:68292708-68292727 Msa0087360:CDS 35.0%
CTCAAGAAAATGAAGGAACA+TGG + chr1_2:68292715-68292734 Msa0087360:CDS 35.0%
TGTCAATTTCTTCAGCTAAC+CGG - chr1_2:68292768-68292787 None:intergenic 35.0%
! ATGGATATGTTGTCATTTGC+TGG + chr1_2:68292928-68292947 Msa0087360:CDS 35.0%
! TGGATATGTTGTCATTTGCT+GGG + chr1_2:68292929-68292948 Msa0087360:CDS 35.0%
GTGAAATTTCAATCCATCAG+TGG + chr1_2:68293114-68293133 Msa0087360:intron 35.0%
! TGTAATTTGCAACTCTTTCG+TGG + chr1_2:68293275-68293294 Msa0087360:intron 35.0%
! TTTCTTACCAAGGGTACATT+TGG + chr1_2:68293363-68293382 Msa0087360:intron 35.0%
! TAGCAATCTTGATGGTATAG+TGG + chr1_2:68293407-68293426 Msa0087360:intron 35.0%
GTGGTGATTTCTCAAAATCA+TGG + chr1_2:68293482-68293501 Msa0087360:intron 35.0%
TCTGTAAAGAAGAGATGAAG+AGG + chr1_2:68293611-68293630 Msa0087360:intron 35.0%
GACAAGGAGATTGTTCATTT+AGG + chr1_2:68293773-68293792 Msa0087360:intron 35.0%
GTGATCCGTATACAATTTCT+TGG - chr1_2:68293807-68293826 None:intergenic 35.0%
TAACCAATGGACACAAAATC+TGG - chr1_2:68293829-68293848 None:intergenic 35.0%
! TCCATTGGTTACACACATAA+TGG + chr1_2:68293838-68293857 Msa0087360:intron 35.0%
TCCATTATGTGTGTAACCAA+TGG - chr1_2:68293842-68293861 None:intergenic 35.0%
!! GTGGATTAGAATACGGAATT+GGG - chr1_2:68293930-68293949 None:intergenic 35.0%
!! AGTGGATTAGAATACGGAAT+TGG - chr1_2:68293931-68293950 None:intergenic 35.0%
!! AGTGACAGTGGATTAGAATA+CGG - chr1_2:68293937-68293956 None:intergenic 35.0%
!! AATTGTTTCTGTCTGGCAAA+TGG + chr1_2:68294560-68294579 Msa0087360:intron 35.0%
GATTGATATGTTCTAACTGC+AGG + chr1_2:68294652-68294671 Msa0087360:intron 35.0%
AACTGTGATTCTCAAGTCTA+GGG - chr1_2:68294787-68294806 None:intergenic 35.0%
GCATGAAAATGTCAGAAAGA+AGG - chr1_2:68294883-68294902 None:intergenic 35.0%
! ATTTTCATGCCAACCTATGA+TGG + chr1_2:68294893-68294912 Msa0087360:CDS 35.0%
TCTCCCTATCAATGAAAATG+GGG - chr1_2:68295006-68295025 None:intergenic 35.0%
ACAAGCTTGAGTGGATATAT+AGG + chr1_2:68295252-68295271 Msa0087360:exon 35.0%
CAAGCTTGAGTGGATATATA+GGG + chr1_2:68295253-68295272 Msa0087360:exon 35.0%
AAGCTTGAGTGGATATATAG+GGG + chr1_2:68295254-68295273 Msa0087360:exon 35.0%
GGATATATAGGGGTTATTTG+TGG + chr1_2:68295264-68295283 Msa0087360:three_prime_UTR 35.0%
!!! GAGTTCGGTCTTTTTCAATT+TGG - chr1_2:68295337-68295356 None:intergenic 35.0%
GAAAATCTGGATCCTGTAAT+AGG - chr1_2:68295359-68295378 None:intergenic 35.0%
! ATTACAGGATCCAGATTTTC+AGG + chr1_2:68295359-68295378 Msa0087360:three_prime_UTR 35.0%
TCGTCTACACAACTAAATCA+GGG - chr1_2:68295474-68295493 None:intergenic 35.0%
ATCGTCTACACAACTAAATC+AGG - chr1_2:68295475-68295494 None:intergenic 35.0%
TTAGTTGTGTAGACGATAGA+AGG + chr1_2:68295478-68295497 Msa0087360:three_prime_UTR 35.0%
ACGATAGAAGGAAGATCATA+CGG + chr1_2:68295490-68295509 Msa0087360:three_prime_UTR 35.0%
! GAAGATCATACGGATTGATT+GGG + chr1_2:68295500-68295519 Msa0087360:three_prime_UTR 35.0%
CAGAAATTTCATCTGTCACT+AGG - chr1_2:68295589-68295608 None:intergenic 35.0%
CTAGTGACAGATGAAATTTC+TGG + chr1_2:68295587-68295606 Msa0087360:three_prime_UTR 35.0%
ATTAAGTCTCCACCATGAGA+AGG + chr1_2:68289197-68289216 Msa0087360:exon 40.0%
ACGTACCTCTGATCGAAAAA+TGG - chr1_2:68289445-68289464 None:intergenic 40.0%
AGATCCGTTTAGAAGAGCTT+TGG + chr1_2:68289544-68289563 Msa0087360:intron 40.0%
TGCTCCAAAGCTCTTCTAAA+CGG - chr1_2:68289551-68289570 None:intergenic 40.0%
AAGGAGTTTGCATCCAATTC+AGG - chr1_2:68290493-68290512 None:intergenic 40.0%
AATTGGATGCAAACTCCTTC+TGG + chr1_2:68290494-68290513 Msa0087360:CDS 40.0%
GGCTAGAAATTCACCCTTTA+AGG + chr1_2:68290803-68290822 Msa0087360:intron 40.0%
!! CACCCTTTAAGGTGAAATAG+TGG + chr1_2:68290814-68290833 Msa0087360:intron 40.0%
CCCCACTATTTCACCTTAAA+GGG - chr1_2:68290819-68290838 None:intergenic 40.0%
!! CCCTTTAAGGTGAAATAGTG+GGG + chr1_2:68290816-68290835 Msa0087360:intron 40.0%
TCCCCACTATTTCACCTTAA+AGG - chr1_2:68290820-68290839 None:intergenic 40.0%
TGAGCTTAGCTCAATTGGTA+GGG - chr1_2:68290882-68290901 None:intergenic 40.0%
TACCAATTGAGCTAAGCTCA+CGG + chr1_2:68290882-68290901 Msa0087360:intron 40.0%
GTGAAGGATAATGCTTGTTC+TGG + chr1_2:68290976-68290995 Msa0087360:intron 40.0%
GAAACACAAGAATATGCACG+TGG - chr1_2:68291115-68291134 None:intergenic 40.0%
CACTGTAATGCATTCACTAC+AGG - chr1_2:68291172-68291191 None:intergenic 40.0%
CCTTGCTAAGAACATGCAAA+TGG - chr1_2:68291606-68291625 None:intergenic 40.0%
CCATTTGCATGTTCTTAGCA+AGG + chr1_2:68291603-68291622 Msa0087360:intron 40.0%
CTTTCTCAATGGATGGTCTA+AGG - chr1_2:68291335-68291354 None:intergenic 40.0%
GACCATAAGGTCTTTCTCAA+TGG - chr1_2:68291795-68291814 None:intergenic 40.0%
GCATTTGCATGTTCTTAGCA+AGG + chr1_2:68292042-68292061 Msa0087360:intron 40.0%
TTTACATGCAGTGGTTTCCA+TGG + chr1_2:68292441-68292460 Msa0087360:intron 40.0%
GCTCAACATCATAGATACCA+TGG - chr1_2:68292461-68292480 None:intergenic 40.0%
AGCACTTCATTAGAACACTG+AGG + chr1_2:68292478-68292497 Msa0087360:CDS 40.0%
!! ACTTATAGGAGCATCTCTAG+GGG - chr1_2:68292677-68292696 None:intergenic 40.0%
!! CAACTTATAGGAGCATCTCT+AGG - chr1_2:68292679-68292698 None:intergenic 40.0%
CTAGAGATGCTCCTATAAGT+TGG + chr1_2:68292677-68292696 Msa0087360:CDS 40.0%
! ATCTTACTCCCTTTTCACAC+CGG + chr1_2:68292746-68292765 Msa0087360:CDS 40.0%
TTGACAATCCTGAGTACCAA+AGG + chr1_2:68292782-68292801 Msa0087360:CDS 40.0%
TAACTCTACACCTCAACCTT+TGG - chr1_2:68292801-68292820 None:intergenic 40.0%
CGAAGATGTATGGACATGAA+GGG - chr1_2:68292901-68292920 None:intergenic 40.0%
CCTTCATGTCCATACATCTT+CGG + chr1_2:68292899-68292918 Msa0087360:CDS 40.0%
CATCTCAAACCGAAGATGTA+TGG - chr1_2:68292911-68292930 None:intergenic 40.0%
! CATACATCTTCGGTTTGAGA+TGG + chr1_2:68292909-68292928 Msa0087360:CDS 40.0%
AACTACAACAGATCCACTGA+TGG - chr1_2:68293130-68293149 None:intergenic 40.0%
! AGAGTAAAAGGACTTTGGAG+TGG - chr1_2:68293183-68293202 None:intergenic 40.0%
GTAGCTACTAGCAATCTTGA+TGG + chr1_2:68293399-68293418 Msa0087360:intron 40.0%
ACAAGCAGCCTCATAAATTG+TGG + chr1_2:68293463-68293482 Msa0087360:intron 40.0%
TCATCAACTGACAGTACACT+TGG - chr1_2:68293755-68293774 None:intergenic 40.0%
!! TGTACTGTCAGTTGATGACA+AGG + chr1_2:68293757-68293776 Msa0087360:intron 40.0%
! TCACCAGATTTTGTGTCCAT+TGG + chr1_2:68293823-68293842 Msa0087360:intron 40.0%
AAATGTGCTGCACATCAACT+GGG - chr1_2:68294084-68294103 None:intergenic 40.0%
TAAATGTGCTGCACATCAAC+TGG - chr1_2:68294085-68294104 None:intergenic 40.0%
! TTCAGAATCTTTTGCTCCTC+AGG - chr1_2:68294388-68294407 None:intergenic 40.0%
GATATGTTCTAACTGCAGGT+TGG + chr1_2:68294656-68294675 Msa0087360:intron 40.0%
!!! TGGTCTTATTTTGCGTGCAT+TGG + chr1_2:68294676-68294695 Msa0087360:CDS 40.0%
!!! GGTCTTATTTTGCGTGCATT+GGG + chr1_2:68294677-68294696 Msa0087360:CDS 40.0%
!! TGGGTTTTGACAATTCTACC+AGG + chr1_2:68294696-68294715 Msa0087360:CDS 40.0%
CTAGGGAACAAACTTCGAAA+TGG - chr1_2:68294770-68294789 None:intergenic 40.0%
GAACTGTGATTCTCAAGTCT+AGG - chr1_2:68294788-68294807 None:intergenic 40.0%
GGTTGTTTGCAAAGTTGCTT+GGG - chr1_2:68294919-68294938 None:intergenic 40.0%
AGGTTGTTTGCAAAGTTGCT+TGG - chr1_2:68294920-68294939 None:intergenic 40.0%
AACTTTGCAAACAACCTCCT+TGG + chr1_2:68294923-68294942 Msa0087360:CDS 40.0%
CATAATAAAGGCGATGACCA+AGG - chr1_2:68294943-68294962 None:intergenic 40.0%
CTTGGTCATCGCCTTTATTA+TGG + chr1_2:68294941-68294960 Msa0087360:CDS 40.0%
! TTGCCCCCATTTTCATTGAT+AGG + chr1_2:68294999-68295018 Msa0087360:CDS 40.0%
! TGCCCCCATTTTCATTGATA+GGG + chr1_2:68295000-68295019 Msa0087360:CDS 40.0%
CTCCCTATCAATGAAAATGG+GGG - chr1_2:68295005-68295024 None:intergenic 40.0%
!! GATGTTTGACAGAAGCATTC+AGG - chr1_2:68295139-68295158 None:intergenic 40.0%
AAACTCTACACAAGCTTGAG+TGG + chr1_2:68295243-68295262 Msa0087360:exon 40.0%
TCCACAGTAATGAACTTCTG+TGG + chr1_2:68295310-68295329 Msa0087360:three_prime_UTR 40.0%
CCACAGTAATGAACTTCTGT+GGG + chr1_2:68295311-68295330 Msa0087360:three_prime_UTR 40.0%
AAAGACCGAACTCCTATTAC+AGG + chr1_2:68295344-68295363 Msa0087360:three_prime_UTR 40.0%
TGGATCCTGTAATAGGAGTT+CGG - chr1_2:68295352-68295371 None:intergenic 40.0%
CGTCTACACAACTAAATCAG+GGG - chr1_2:68295473-68295492 None:intergenic 40.0%
! GGAAGATCATACGGATTGAT+TGG + chr1_2:68295499-68295518 Msa0087360:three_prime_UTR 40.0%
TAGAGAAATGGACACCGTGT+CGG - chr1_2:68289106-68289125 None:intergenic 45.0%
! GTAGGTGACGGTTAGAGAAA+TGG - chr1_2:68289118-68289137 None:intergenic 45.0%
AGTGAAGAATGAGGAGCAGT+AGG - chr1_2:68289136-68289155 None:intergenic 45.0%
! AATGTCGATTGTTGCAGACC+TGG + chr1_2:68289282-68289301 Msa0087360:intron 45.0%
CGATGTGTCTTCCATTCTGA+CGG - chr1_2:68289314-68289333 None:intergenic 45.0%
CGTCAGAATGGAAGACACAT+CGG + chr1_2:68289312-68289331 Msa0087360:CDS 45.0%
ATCGGAGGATCAGGATTCAA+AGG + chr1_2:68289330-68289349 Msa0087360:CDS 45.0%
!! CTTTGGAGCAATGCTGATTC+CGG + chr1_2:68289561-68289580 Msa0087360:CDS 45.0%
!! TAGCCATTAGTCTTACTCGG+AGG - chr1_2:68289740-68289759 None:intergenic 45.0%
TACACTAGTGCTGCCTGAAT+TGG + chr1_2:68290477-68290496 Msa0087360:CDS 45.0%
ATACCTGTCATCATGCCAGA+AGG - chr1_2:68290512-68290531 None:intergenic 45.0%
! TTTCTAGCCACTACGCTACT+TGG - chr1_2:68290792-68290811 None:intergenic 45.0%
! AGGTGAAATAGTGGGGAATC+TGG + chr1_2:68290823-68290842 Msa0087360:intron 45.0%
! GGTGAAATAGTGGGGAATCT+GGG + chr1_2:68290824-68290843 Msa0087360:intron 45.0%
! GTGAAATAGTGGGGAATCTG+GGG + chr1_2:68290825-68290844 Msa0087360:intron 45.0%
TAGGGATATTACGGTATGCC+GGG - chr1_2:68290864-68290883 None:intergenic 45.0%
GTAGGGATATTACGGTATGC+CGG - chr1_2:68290865-68290884 None:intergenic 45.0%
GTGAGCTTAGCTCAATTGGT+AGG - chr1_2:68290883-68290902 None:intergenic 45.0%
ACCAATTGAGCTAAGCTCAC+GGG + chr1_2:68290883-68290902 Msa0087360:intron 45.0%
TGCACCCAATGTCAAGTGAA+TGG - chr1_2:68291979-68291998 None:intergenic 45.0%
!!! GAGAAGAGGCACCTTTTCTA+TGG + chr1_2:68292322-68292341 Msa0087360:intron 45.0%
! GGCGTCGCTTTATATGCAAT+AGG + chr1_2:68292390-68292409 Msa0087360:intron 45.0%
!! TTATAGGAGCATCTCTAGGG+GGG - chr1_2:68292675-68292694 None:intergenic 45.0%
!! CTTATAGGAGCATCTCTAGG+GGG - chr1_2:68292676-68292695 None:intergenic 45.0%
TCAGCTAACCGGTGTGAAAA+GGG - chr1_2:68292757-68292776 None:intergenic 45.0%
TTCAGCTAACCGGTGTGAAA+AGG - chr1_2:68292758-68292777 None:intergenic 45.0%
ATCCTGAGTACCAAAGGTTG+AGG + chr1_2:68292788-68292807 Msa0087360:CDS 45.0%
! GTTGATAAGCTACGTGCACA+AGG + chr1_2:68292874-68292893 Msa0087360:CDS 45.0%
CCGAAGATGTATGGACATGA+AGG - chr1_2:68292902-68292921 None:intergenic 45.0%
TTCAGAGCCAAATGTACCCT+TGG - chr1_2:68293373-68293392 None:intergenic 45.0%
! CTGTCTGTTTTCCTAGATCC+CGG + chr1_2:68293523-68293542 Msa0087360:intron 45.0%
ATATCAAACACAGCTGGAGC+CGG - chr1_2:68293545-68293564 None:intergenic 45.0%
ATGAAGAGGTTGTCGCAACT+TGG + chr1_2:68293625-68293644 Msa0087360:intron 45.0%
TGAAGAGGTTGTCGCAACTT+GGG + chr1_2:68293626-68293645 Msa0087360:intron 45.0%
CAGTACACTTGGTCCAATCT+AGG - chr1_2:68293744-68293763 None:intergenic 45.0%
ACCAGGATATATCTTGCAGC+TGG + chr1_2:68294713-68294732 Msa0087360:CDS 45.0%
TCCAGCTGCAAGATATATCC+TGG - chr1_2:68294717-68294736 None:intergenic 45.0%
CTTGCAGCTGGAGAATTGTT+TGG + chr1_2:68294725-68294744 Msa0087360:CDS 45.0%
CAGCTGGAGAATTGTTTGGT+GGG + chr1_2:68294729-68294748 Msa0087360:CDS 45.0%
! AGCTGGAGAATTGTTTGGTG+GGG + chr1_2:68294730-68294749 Msa0087360:CDS 45.0%
!! AAGAGCTTGCTGAGAACACT+AGG + chr1_2:68294822-68294841 Msa0087360:CDS 45.0%
!! AGAGCTTGCTGAGAACACTA+GGG + chr1_2:68294823-68294842 Msa0087360:CDS 45.0%
! AGGTTCTGCTGTCGATTACA+TGG + chr1_2:68294853-68294872 Msa0087360:CDS 45.0%
AAAGTTGCTTGGGCCATCAT+AGG - chr1_2:68294909-68294928 None:intergenic 45.0%
AATAAAGGCGATGACCAAGG+AGG - chr1_2:68294940-68294959 None:intergenic 45.0%
!! ACGAATCCCCGATTTTGATG+AGG + chr1_2:68295030-68295049 Msa0087360:CDS 45.0%
TAACGGCCTCATCAAAATCG+GGG - chr1_2:68295039-68295058 None:intergenic 45.0%
CTAACGGCCTCATCAAAATC+GGG - chr1_2:68295040-68295059 None:intergenic 45.0%
CCTAACGGCCTCATCAAAAT+CGG - chr1_2:68295041-68295060 None:intergenic 45.0%
TGGGTGGACAATTGTCTTCT+GGG - chr1_2:68295171-68295190 None:intergenic 45.0%
TTGGGTGGACAATTGTCTTC+TGG - chr1_2:68295172-68295191 None:intergenic 45.0%
CCCACAGAAGTTCATTACTG+TGG - chr1_2:68295314-68295333 None:intergenic 45.0%
ATTGGGTAGAGAGCAATGTC+TGG + chr1_2:68295517-68295536 Msa0087360:three_prime_UTR 45.0%
GTGTACAATGTGCATCCGAA+AGG + chr1_2:68295549-68295568 Msa0087360:three_prime_UTR 45.0%
!!! TTATTACTTTTATATTTTTT+CGG + chr1_2:68290766-68290785 Msa0087360:intron 5.0%
ATCTGAGAAAGGGCGGTTGA+CGG - chr1_2:68289081-68289100 None:intergenic 50.0%
CGTGTCGGAGATCTGAGAAA+GGG - chr1_2:68289091-68289110 None:intergenic 50.0%
CCTTTCTCAGATCTCCGACA+CGG + chr1_2:68289089-68289108 Msa0087360:five_prime_UTR 50.0%
GAATGAGGAGCAGTAGGTGA+CGG - chr1_2:68289130-68289149 None:intergenic 50.0%
CAGAATGGAAGACACATCGG+AGG + chr1_2:68289315-68289334 Msa0087360:CDS 50.0%
!! TTAGTCTTACTCGGAGGAGC+TGG - chr1_2:68289734-68289753 None:intergenic 50.0%
GCTCCTCCGAGTAAGACTAA+TGG + chr1_2:68289734-68289753 Msa0087360:intron 50.0%
TTGCGTGTTCGATGTAACGG+TGG + chr1_2:68289761-68289780 Msa0087360:CDS 50.0%
CTAATGCTGTTCTTGCTGCG+CGG + chr1_2:68290443-68290462 Msa0087360:CDS 50.0%
ACTCCTTCTGGCATGATGAC+AGG + chr1_2:68290506-68290525 Msa0087360:CDS 50.0%
! TTTTCGGCCAAGTAGCGTAG+TGG + chr1_2:68290782-68290801 Msa0087360:intron 50.0%
TATTACGGTATGCCGGGGAT+GGG - chr1_2:68290858-68290877 None:intergenic 50.0%
ATATTACGGTATGCCGGGGA+TGG - chr1_2:68290859-68290878 None:intergenic 50.0%
AGGGATATTACGGTATGCCG+GGG - chr1_2:68290863-68290882 None:intergenic 50.0%
CCAATTGAGCTAAGCTCACG+GGG + chr1_2:68290884-68290903 Msa0087360:intron 50.0%
TGCACCCAAGGTCAATCGAA+TGG - chr1_2:68291532-68291551 None:intergenic 50.0%
CACCTCAACCTTTGGTACTC+AGG - chr1_2:68292793-68292812 None:intergenic 50.0%
AGTGTGTGCACAACACGTCT+GGG - chr1_2:68293306-68293325 None:intergenic 50.0%
AAGTGTGTGCACAACACGTC+TGG - chr1_2:68293307-68293326 None:intergenic 50.0%
TATCAAACACAGCTGGAGCC+GGG - chr1_2:68293544-68293563 None:intergenic 50.0%
CCAAACGCTCGAGACATAAC+AGG - chr1_2:68294188-68294207 None:intergenic 50.0%
CCTGTTATGTCTCGAGCGTT+TGG + chr1_2:68294185-68294204 Msa0087360:intron 50.0%
AGTCAATGGGCATTTGCCGA+TGG - chr1_2:68294467-68294486 None:intergenic 50.0%
TTACCTCCTCGGGAGTCAAT+GGG - chr1_2:68294480-68294499 None:intergenic 50.0%
TTTACCTCCTCGGGAGTCAA+TGG - chr1_2:68294481-68294500 None:intergenic 50.0%
GCAGCTGGAGAATTGTTTGG+TGG + chr1_2:68294728-68294747 Msa0087360:CDS 50.0%
!! GAGCTTGCTGAGAACACTAG+GGG + chr1_2:68294824-68294843 Msa0087360:CDS 50.0%
!! AGCTTGCTGAGAACACTAGG+GGG + chr1_2:68294825-68294844 Msa0087360:CDS 50.0%
TTGCTTGGGCCATCATAGGT+TGG - chr1_2:68294905-68294924 None:intergenic 50.0%
! GGGGCAAGAGCTTTTCTATC+AGG - chr1_2:68294986-68295005 None:intergenic 50.0%
!! CCGATTTTGATGAGGCCGTT+AGG + chr1_2:68295038-68295057 Msa0087360:CDS 50.0%
TCGGGAGAAACACGCTTATG+AGG - chr1_2:68295094-68295113 None:intergenic 50.0%
GTCGGAGATCTGAGAAAGGG+CGG - chr1_2:68289088-68289107 None:intergenic 55.0%
CCGTGTCGGAGATCTGAGAA+AGG - chr1_2:68289092-68289111 None:intergenic 55.0%
CCATTCTGACGGTGAAGTCC+AGG - chr1_2:68289303-68289322 None:intergenic 55.0%
CCTGGACTTCACCGTCAGAA+TGG + chr1_2:68289300-68289319 Msa0087360:CDS 55.0%
GGAAGACACATCGGAGGATC+AGG + chr1_2:68289321-68289340 Msa0087360:CDS 55.0%
!! TGGAGCAATGCTGATTCCGG+TGG + chr1_2:68289564-68289583 Msa0087360:CDS 55.0%
!! GCAATGCTGATTCCGGTGGT+TGG + chr1_2:68289568-68289587 Msa0087360:CDS 55.0%
ATACGGGGCCAATGAGAACG+CGG - chr1_2:68289609-68289628 None:intergenic 55.0%
ATTACGGTATGCCGGGGATG+GGG - chr1_2:68290857-68290876 None:intergenic 55.0%
CCCCGTGAGCTTAGCTCAAT+TGG - chr1_2:68290887-68290906 None:intergenic 55.0%
AGAGGTTGTCGCAACTTGGG+AGG + chr1_2:68293629-68293648 Msa0087360:intron 55.0%
GAGGTTGTCGCAACTTGGGA+GGG + chr1_2:68293630-68293649 Msa0087360:intron 55.0%
AGGTTGTCGCAACTTGGGAG+GGG + chr1_2:68293631-68293650 Msa0087360:intron 55.0%
! GGAGGGGTTTGGAGCTAGTA+AGG + chr1_2:68293647-68293666 Msa0087360:intron 55.0%
!! CAAATGCCCATTGACTCCCG+AGG + chr1_2:68294471-68294490 Msa0087360:CDS 55.0%
TGCTGAGAACACTAGGGGGT+TGG + chr1_2:68294829-68294848 Msa0087360:CDS 55.0%
TGAGAAAGGGCGGTTGACGG+TGG - chr1_2:68289078-68289097 None:intergenic 60.0%
TGAGAACGCGGCGACGATGA+CGG - chr1_2:68289597-68289616 None:intergenic 60.0%
CATCGTCGCCGCGTTCTCAT+TGG + chr1_2:68289598-68289617 Msa0087360:CDS 60.0%
TGGGGTTCAAACCCCATCCC+CGG + chr1_2:68290843-68290862 Msa0087360:intron 60.0%
!! TAGGAGCATCTCTAGGGGGG+CGG - chr1_2:68292672-68292691 None:intergenic 60.0%
GTCGCAACTTGGGAGGGGTT+TGG + chr1_2:68293636-68293655 Msa0087360:intron 60.0%
!! ATGCCCATTGACTCCCGAGG+AGG + chr1_2:68294474-68294493 Msa0087360:CDS 60.0%
! GAGAACACTAGGGGGTTGGC+AGG + chr1_2:68294833-68294852 Msa0087360:CDS 60.0%
GACGGTGGAGGAGTGGTGGT+GGG - chr1_2:68289063-68289082 None:intergenic 65.0%
TGACGGTGGAGGAGTGGTGG+TGG - chr1_2:68289064-68289083 None:intergenic 65.0%
GGTTGACGGTGGAGGAGTGG+TGG - chr1_2:68289067-68289086 None:intergenic 65.0%
GAAAGGGCGGTTGACGGTGG+AGG - chr1_2:68289075-68289094 None:intergenic 65.0%
! CGATGACGGTCGCCAACCAC+CGG - chr1_2:68289583-68289602 None:intergenic 65.0%
CACAGCTGGAGCCGGGATCT+AGG - chr1_2:68293537-68293556 None:intergenic 65.0%
GGCGGTTGACGGTGGAGGAG+TGG - chr1_2:68289070-68289089 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 68289039 68295768 68289039 ID=Msa0087360;Name=Msa0087360
chr1_2 mRNA 68289039 68295768 68289039 ID=Msa0087360-mRNA-1;Parent=Msa0087360;Name=Msa0087360-mRNA-1;_AED=0.06;_eAED=0.06;_QI=172|1|1|1|1|1|9|507|510
chr1_2 exon 68289039 68289218 68289039 ID=Msa0087360-mRNA-1:exon:23269;Parent=Msa0087360-mRNA-1
chr1_2 exon 68289299 68289458 68289299 ID=Msa0087360-mRNA-1:exon:23270;Parent=Msa0087360-mRNA-1
chr1_2 exon 68289546 68289624 68289546 ID=Msa0087360-mRNA-1:exon:23271;Parent=Msa0087360-mRNA-1
chr1_2 exon 68289735 68289805 68289735 ID=Msa0087360-mRNA-1:exon:23272;Parent=Msa0087360-mRNA-1
chr1_2 exon 68290439 68290527 68290439 ID=Msa0087360-mRNA-1:exon:23273;Parent=Msa0087360-mRNA-1
chr1_2 exon 68292452 68292575 68292452 ID=Msa0087360-mRNA-1:exon:23274;Parent=Msa0087360-mRNA-1
chr1_2 exon 68292667 68292950 68292667 ID=Msa0087360-mRNA-1:exon:23275;Parent=Msa0087360-mRNA-1
chr1_2 exon 68294366 68294495 68294366 ID=Msa0087360-mRNA-1:exon:23276;Parent=Msa0087360-mRNA-1
chr1_2 exon 68294674 68295768 68294674 ID=Msa0087360-mRNA-1:exon:23277;Parent=Msa0087360-mRNA-1
chr1_2 five_prime_UTR 68289039 68289210 68289039 ID=Msa0087360-mRNA-1:five_prime_utr;Parent=Msa0087360-mRNA-1
chr1_2 CDS 68289211 68289218 68289211 ID=Msa0087360-mRNA-1:cds;Parent=Msa0087360-mRNA-1
chr1_2 CDS 68289299 68289458 68289299 ID=Msa0087360-mRNA-1:cds;Parent=Msa0087360-mRNA-1
chr1_2 CDS 68289546 68289624 68289546 ID=Msa0087360-mRNA-1:cds;Parent=Msa0087360-mRNA-1
chr1_2 CDS 68289735 68289805 68289735 ID=Msa0087360-mRNA-1:cds;Parent=Msa0087360-mRNA-1
chr1_2 CDS 68290439 68290527 68290439 ID=Msa0087360-mRNA-1:cds;Parent=Msa0087360-mRNA-1
chr1_2 CDS 68292452 68292575 68292452 ID=Msa0087360-mRNA-1:cds;Parent=Msa0087360-mRNA-1
chr1_2 CDS 68292667 68292950 68292667 ID=Msa0087360-mRNA-1:cds;Parent=Msa0087360-mRNA-1
chr1_2 CDS 68294366 68294495 68294366 ID=Msa0087360-mRNA-1:cds;Parent=Msa0087360-mRNA-1
chr1_2 CDS 68294674 68295261 68294674 ID=Msa0087360-mRNA-1:cds;Parent=Msa0087360-mRNA-1
chr1_2 three_prime_UTR 68295262 68295768 68295262 ID=Msa0087360-mRNA-1:three_prime_utr;Parent=Msa0087360-mRNA-1
Gene Sequence

>Msa0087360

ATGAGAAGACCTGGACTTCACCGTCAGAATGGAAGACACATCGGAGGATCAGGATTCAAAGGAATGATTGCGAAGTTATCAATTGCTGCTATCGTACTCTTGATCTGCACGTTCTCATTGTTCTACTCTTCATCAAATGAGAATGTTCAATCCATTTTTCGATCAGAGATCCGTTTAGAAGAGCTTTGGAGCAATGCTGATTCCGGTGGTTGGCGACCGTCATCGTCGCCGCGTTCTCATTGGCCCCCTCCTCCGAGTAAGACTAATGGCTATTTGCGTGTTCGATGTAACGGTGGACTGAATCAGCAGCGTACTGCAATCTCTAATGCTGTTCTTGCTGCGCGGATCATGAATGCTACACTAGTGCTGCCTGAATTGGATGCAAACTCCTTCTGGCATGATGACAGTGGTTTCCATGGTATCTATGATGTTGAGCACTTCATTAGAACACTGAGGTTTGACGTAAAAATTGTAGAAAGCATTCCAGAAAATGAGAAAAATGGCAAAAAGAAGAAATTAAAGGCATTTCAGATCCGCCCCCCTAGAGATGCTCCTATAAGTTGGTATACTACTGATGCTCTCAAGAAAATGAAGGAACATGGTGCCATTTATCTTACTCCCTTTTCACACCGGTTAGCTGAAGAAATTGACAATCCTGAGTACCAAAGGTTGAGGTGTAGAGTTAACTATCATGCTTTAAGATTCAAGCCACATATTATGAAGCTAAGTCAATCAATAGTTGATAAGCTACGTGCACAAGGACCCTTCATGTCCATACATCTTCGGTTTGAGATGGATATGTTGTCATTTGCTGGATGCTTTGATATATTTACACCTGAGGAGCAAAAGATTCTGAAGAAATATCGAGAAGAAAATTTTGCACCTAAAAAACTAGTCTATAATGAAAGAAGAGCCATCGGCAAATGCCCATTGACTCCCGAGGAGGTTGGTCTTATTTTGCGTGCATTGGGTTTTGACAATTCTACCAGGATATATCTTGCAGCTGGAGAATTGTTTGGTGGGGATCGATTTATGAATCCATTTCGAAGTTTGTTCCCTAGACTTGAGAATCACAGTTCTGTAGATCACTCTGAAGAGCTTGCTGAGAACACTAGGGGGTTGGCAGGTTCTGCTGTCGATTACATGGTCTGCCTTCTTTCTGACATTTTCATGCCAACCTATGATGGCCCAAGCAACTTTGCAAACAACCTCCTTGGTCATCGCCTTTATTATGGTTTTCGGACTACAATCAGACCTGATAGAAAAGCTCTTGCCCCCATTTTCATTGATAGGGAGAATGGACGAATCCCCGATTTTGATGAGGCCGTTAGGAAAGTAATGCTTAAAACAAACTTTGGTGAACCTCATAAGCGTGTTTCTCCCGAGTCTTTCTATACAAATTCTTGGCCTGAATGCTTCTGTCAAACATCAGCAAAGAACCCAGAAGACAATTGTCCACCCAATGATGTTTTAAATATTCTGCATGATGAATTGGTAAAAGCATCTACAGACACAAACTCTACACAAGCTTGA
Protein sequence

>Msa0087360

MRRPGLHRQNGRHIGGSGFKGMIAKLSIAAIVLLICTFSLFYSSSNENVQSIFRSEIRLEELWSNADSGGWRPSSSPRSHWPPPPSKTNGYLRVRCNGGLNQQRTAISNAVLAARIMNATLVLPELDANSFWHDDSGFHGIYDVEHFIRTLRFDVKIVESIPENEKNGKKKKLKAFQIRPPRDAPISWYTTDALKKMKEHGAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSQSIVDKLRAQGPFMSIHLRFEMDMLSFAGCFDIFTPEEQKILKKYREENFAPKKLVYNERRAIGKCPLTPEEVGLILRALGFDNSTRIYLAAGELFGGDRFMNPFRSLFPRLENHSSVDHSEELAENTRGLAGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIDRENGRIPDFDEAVRKVMLKTNFGEPHKRVSPESFYTNSWPECFCQTSAKNPEDNCPPNDVLNILHDELVKASTDTNSTQA*