AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0180990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180990 MtrunA17_Chr1g0204121 98.431 510 8 0 1 510 1 510 0.0 1051
Msa0180990 MtrunA17_Chr1g0204141 91.634 514 38 2 1 510 1 513 0.0 980
Msa0180990 MtrunA17_Chr4g0042711 39.355 465 256 12 29 477 38 492 6.00e-98 305
Msa0180990 MtrunA17_Chr5g0417871 37.161 479 264 12 29 485 19 482 4.61e-91 286
Msa0180990 MtrunA17_Chr5g0426591 36.281 441 244 9 61 476 85 513 4.01e-89 283
Msa0180990 MtrunA17_Chr3g0143821 39.302 430 246 10 61 484 82 502 4.06e-89 284
Msa0180990 MtrunA17_Chr3g0129981 39.140 442 233 10 61 479 88 516 1.51e-88 281
Msa0180990 MtrunA17_Chr4g0070551 39.310 435 229 11 61 476 201 619 1.91e-88 283
Msa0180990 MtrunA17_Chr4g0056061 41.176 391 219 6 88 475 108 490 1.08e-86 276
Msa0180990 MtrunA17_Chr2g0307971 38.835 412 237 7 73 473 100 507 1.20e-85 273
Msa0180990 MtrunA17_Chr5g0412251 36.123 454 246 11 58 475 57 502 4.44e-85 271
Msa0180990 MtrunA17_Chr4g0061781 40.191 418 210 12 82 473 105 508 6.67e-85 271
Msa0180990 MtrunA17_Chr6g0455571 40.587 409 226 8 72 467 98 502 7.24e-85 271
Msa0180990 MtrunA17_Chr5g0399311 42.276 369 206 5 88 455 124 486 1.10e-84 271
Msa0180990 MtrunA17_Chr5g0436321 40.494 405 210 11 88 475 161 551 1.90e-84 271
Msa0180990 MtrunA17_Chr3g0132371 36.735 441 245 9 60 478 114 542 3.40e-84 270
Msa0180990 MtrunA17_Chr5g0448581 37.705 427 244 10 61 478 90 503 3.54e-84 271
Msa0180990 MtrunA17_Chr4g0008451 37.327 434 241 10 61 477 205 624 6.14e-84 272
Msa0180990 MtrunA17_Chr3g0132951 36.052 466 253 13 49 476 59 517 1.60e-83 268
Msa0180990 MtrunA17_Chr3g0123521 35.321 436 256 10 62 476 119 549 2.81e-82 265
Msa0180990 MtrunA17_Chr1g0160781 37.358 439 244 12 59 477 122 549 8.15e-81 261
Msa0180990 MtrunA17_Chr4g0043911 35.217 460 261 13 41 477 105 550 1.51e-78 256
Msa0180990 MtrunA17_Chr3g0077321 35.320 453 250 15 59 484 119 555 1.89e-78 256
Msa0180990 MtrunA17_Chr5g0424241 37.136 412 223 11 89 474 158 559 1.47e-72 241
Msa0180990 MtrunA17_Chr3g0087291 31.308 428 273 9 61 477 142 559 2.48e-67 226
Msa0180990 MtrunA17_Chr4g0010511 32.634 429 266 9 61 477 202 619 1.66e-65 223
Msa0180990 MtrunA17_Chr2g0284071 31.692 467 257 15 61 475 185 641 2.49e-63 218
Msa0180990 MtrunA17_Chr4g0075311 33.619 467 251 13 60 476 136 593 1.50e-62 214
Msa0180990 MtrunA17_Chr7g0220381 32.615 325 193 8 58 367 77 390 6.15e-49 179
Msa0180990 MtrunA17_Chr1g0146501 32.239 335 207 7 52 369 53 384 8.85e-46 170
Msa0180990 MtrunA17_Chr4g0003561 28.538 424 263 14 61 475 47 439 2.46e-44 162
Msa0180990 MtrunA17_Chr3g0127811 32.550 298 177 7 84 369 59 344 8.75e-41 153
Msa0180990 MtrunA17_Chr7g0240241 43.750 112 57 1 250 355 2 113 1.57e-24 99.0
Msa0180990 MtrunA17_Chr4g0002361 21.958 378 242 14 57 419 50 389 5.54e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180990 AT1G04910.1 77.626 514 108 3 1 508 1 513 0.0 816
Msa0180990 AT1G14020.1 39.750 400 223 8 88 475 91 484 1.05e-88 281
Msa0180990 AT5G35570.1 39.955 443 229 14 55 477 218 643 1.62e-87 282
Msa0180990 AT5G64600.1 37.838 444 230 12 61 476 91 516 5.92e-87 277
Msa0180990 AT4G24530.1 36.784 454 241 11 61 477 75 519 6.14e-86 275
Msa0180990 AT2G37980.1 37.808 447 245 11 49 477 187 618 6.76e-86 278
Msa0180990 AT2G03280.1 40.100 399 220 9 88 473 88 480 7.26e-86 273
Msa0180990 AT5G15740.1 40.000 405 223 9 84 473 99 498 8.77e-86 274
Msa0180990 AT4G38390.1 39.747 395 228 7 86 477 121 508 2.42e-85 274
Msa0180990 AT5G65470.1 35.575 461 251 12 54 476 52 504 4.32e-84 269
Msa0180990 AT5G01100.1 38.901 455 239 13 45 477 174 611 7.55e-84 272
Msa0180990 AT3G54100.1 36.986 438 241 11 59 477 193 614 2.22e-83 271
Msa0180990 AT1G22460.1 36.674 439 244 11 59 475 132 558 9.02e-83 268
Msa0180990 AT3G02250.1 36.062 452 257 11 49 473 52 498 2.54e-81 262
Msa0180990 AT1G20550.1 38.903 401 226 12 86 479 107 495 3.85e-81 263
Msa0180990 AT3G26370.1 35.862 435 253 10 63 476 128 557 4.10e-81 263
Msa0180990 AT2G03280.2 37.619 420 217 9 88 467 88 502 9.21e-80 258
Msa0180990 AT4G16650.2 40.816 392 219 9 88 475 122 504 1.82e-79 258
Msa0180990 AT4G16650.1 40.816 392 219 9 88 475 122 504 1.82e-79 258
Msa0180990 AT2G01480.1 36.344 454 249 15 59 487 127 565 3.90e-78 255
Msa0180990 AT1G76270.1 37.905 401 230 12 86 479 104 492 1.30e-77 254
Msa0180990 AT2G01480.2 38.832 394 203 13 59 428 127 506 2.02e-77 253
Msa0180990 AT1G35510.1 33.135 504 284 14 26 484 71 566 8.41e-77 252
Msa0180990 AT1G14970.2 35.455 440 251 14 57 475 6 433 4.90e-75 244
Msa0180990 AT1G38065.1 37.046 413 224 11 88 474 36 438 1.44e-74 243
Msa0180990 AT1G38065.2 37.046 413 224 11 88 474 26 428 1.63e-74 243
Msa0180990 AT1G14970.3 37.010 408 228 12 88 475 9 407 1.96e-74 241
Msa0180990 AT1G14970.1 35.385 455 257 14 48 475 109 553 9.80e-74 244
Msa0180990 AT1G38131.1 37.046 413 224 11 88 474 155 557 2.32e-73 243
Msa0180990 AT5G63390.1 33.411 431 259 11 60 475 132 549 1.84e-69 232
Msa0180990 AT2G44500.1 32.864 426 264 9 61 474 146 561 9.50e-69 231
Msa0180990 AT3G07900.1 31.776 428 272 9 61 477 157 575 5.55e-64 218
Msa0180990 AT1G11990.1 30.909 440 282 8 54 476 156 590 5.09e-63 216
Msa0180990 AT1G62330.1 31.466 464 262 11 60 474 193 649 7.60e-63 217
Msa0180990 AT1G29200.4 33.949 433 233 11 88 475 70 494 2.21e-59 204
Msa0180990 AT1G29200.1 33.949 433 233 11 88 475 70 494 2.21e-59 204
Msa0180990 AT1G29200.2 31.066 544 280 16 19 475 75 610 5.86e-59 206
Msa0180990 AT1G11990.2 28.333 480 285 8 51 476 138 612 1.29e-57 202
Msa0180990 AT1G29200.3 33.724 427 230 11 94 475 2 420 4.70e-57 196
Msa0180990 AT3G03810.2 33.421 380 209 10 28 369 10 383 1.09e-55 197
Msa0180990 AT3G03810.1 33.421 380 209 10 28 369 10 383 1.09e-55 197
Msa0180990 AT1G52630.1 30.140 428 261 13 55 475 40 436 7.94e-51 180
Msa0180990 AT3G30300.2 33.013 312 192 7 73 369 85 394 6.11e-48 176
Msa0180990 AT3G30300.1 33.013 312 192 7 73 369 85 394 6.11e-48 176
Msa0180990 AT3G26370.2 38.843 242 137 4 63 293 128 369 1.61e-46 167
Msa0180990 AT2G44500.2 34.470 264 160 4 61 316 146 404 5.92e-43 158
Msa0180990 AT1G52630.2 28.307 378 234 12 104 475 2 348 3.45e-36 138
Msa0180990 AT3G21190.1 24.339 378 216 15 81 439 79 405 2.33e-18 87.8
Msa0180990 AT1G51630.1 25.072 347 201 12 88 419 91 393 5.27e-18 86.7

Find 162 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATATATGTTAGATATT+TGG 0.154327 1_4:-68980192 Msa0180990:three_prime_UTR
TTGGGTGGACAATTGTCTTC+TGG 0.181926 1_4:+68980630 None:intergenic
GAAGAAATTAAAGGCATTTC+AGG 0.211451 1_4:-68983246 Msa0180990:intron
ATTCTCCCTATCAATGAAAA+TGG 0.236334 1_4:+68980794 None:intergenic
CTTGGTCATCGCCTTTATTA+TGG 0.252041 1_4:-68980858 Msa0180990:CDS
CTAGTGACAGATGAAATTTC+TGG 0.266164 1_4:-68980212 Msa0180990:three_prime_UTR
AGTCTTTCTATACAAATTCT+TGG 0.285777 1_4:-68980686 Msa0180990:CDS
TAATAATGTAATATGTTATT+CGG 0.292591 1_4:-68980120 Msa0180990:three_prime_UTR
TGGGTGGACAATTGTCTTCT+GGG 0.294103 1_4:+68980631 None:intergenic
AAATATTCTGCATGATGAAT+TGG 0.310357 1_4:-68980598 Msa0180990:CDS
AAGGAGTTTGCATCCAATTC+AGG 0.312722 1_4:+68985331 None:intergenic
AATTGGATGCAAACTCCTTC+TGG 0.314006 1_4:-68985327 Msa0180990:CDS
CAGAATATTTAAAACATCAT+TGG 0.318046 1_4:+68980611 None:intergenic
GAAAATCTGGATCCTGTAAT+AGG 0.319863 1_4:+68980443 None:intergenic
ATCGTCTACACGACTAAATC+AGG 0.331712 1_4:+68980327 None:intergenic
ACAAATATGACCTGAAAATC+TGG 0.333258 1_4:+68980430 None:intergenic
TCAGTAGTATACCAACTTAT+AGG 0.339678 1_4:+68983112 None:intergenic
GATGTTTGACAGAAGCATTC+AGG 0.344083 1_4:+68980663 None:intergenic
ACAAGCTTGAGTGGATATAT+AGG 0.349401 1_4:-68980547 Msa0180990:exon
CAAGCTTGAGTGGATATATA+GGG 0.351376 1_4:-68980546 Msa0180990:exon
CTTTGGAGCAATGCTGATTC+CGG 0.352641 1_4:-68986259 Msa0180990:CDS
CCTAACGGCCTCATCAAAAT+CGG 0.368288 1_4:+68980761 None:intergenic
AAAGACCGAACTCCTATTAC+AGG 0.372314 1_4:-68980455 Msa0180990:three_prime_UTR
GGAAGATCATACGGATTGAT+TGG 0.375327 1_4:-68980300 Msa0180990:three_prime_UTR
ATGGATATGTTGTCATTTGC+TGG 0.382372 1_4:-68982872 Msa0180990:CDS
TGAAAAGGGAGTAAGATAAA+TGG 0.392886 1_4:+68983060 None:intergenic
TAGTCCGAAAACCATAATAA+AGG 0.394892 1_4:+68980847 None:intergenic
TACACTAGTGCTGCCTGAAT+TGG 0.395186 1_4:-68985344 Msa0180990:CDS
TTCTCCCTATCAATGAAAAT+GGG 0.403139 1_4:+68980795 None:intergenic
TAACTCTACACCTCAACCTT+TGG 0.403900 1_4:+68983002 None:intergenic
GGAAGACACATCGGAGGATC+AGG 0.408537 1_4:-68986499 Msa0180990:CDS
TTTACCTCCTCGGGAGTCAA+TGG 0.416227 1_4:+68981322 None:intergenic
CCTTCATGTCCATACATCTT+CGG 0.416287 1_4:-68982901 Msa0180990:CDS
GGTTGTTTGCAAAGTTGCTT+GGG 0.417543 1_4:+68980883 None:intergenic
TTCAGCTAACCGGTGTGAAA+AGG 0.419566 1_4:+68983045 None:intergenic
TGTCAATTTCTTCAGCTAAC+CGG 0.425709 1_4:+68983035 None:intergenic
AAAGTTGCTTGGGCCATCAT+AGG 0.426197 1_4:+68980893 None:intergenic
TGACGGTGGAGGAGTGGTGG+TGG 0.427378 1_4:+68986765 None:intergenic
CTTGCAGCTGGAGAATTGTT+TGG 0.428527 1_4:-68981074 Msa0180990:CDS
AGAATATTTAAAACATCATT+GGG 0.428907 1_4:+68980612 None:intergenic
CATCGTCGCCGCGTTCTCAT+TGG 0.429992 1_4:-68986222 Msa0180990:CDS
CTAGGGAACAAACTTCGAAA+TGG 0.433828 1_4:+68981032 None:intergenic
CATCTCAAACCGAAGATGTA+TGG 0.438346 1_4:+68982892 None:intergenic
GGTTGACGGTGGAGGAGTGG+TGG 0.446235 1_4:+68986762 None:intergenic
GCCGGTGACGGTTAGAGAAA+TGG 0.446654 1_4:+68986711 None:intergenic
TGCTCCAAAGCTCTTCTAAA+CGG 0.447361 1_4:+68986272 None:intergenic
TGACTTAGCTTCATAATATG+TGG 0.449252 1_4:+68982956 None:intergenic
AGATCCGTTTAGAAGAGCTT+TGG 0.450751 1_4:-68986276 Msa0180990:CDS
CACCTCAACCTTTGGTACTC+AGG 0.452836 1_4:+68983010 None:intergenic
AACTTATAGGAGCATCTCTA+GGG 0.453270 1_4:+68983125 None:intergenic
GTAACTATATAAGTGCCTTT+CGG 0.453428 1_4:+68980235 None:intergenic
CAACTTATAGGAGCATCTCT+AGG 0.455037 1_4:+68983124 None:intergenic
AGGTTGTTTGCAAAGTTGCT+TGG 0.455901 1_4:+68980882 None:intergenic
ATAGTACTACTCTTATTATG+TGG 0.459137 1_4:+68986644 None:intergenic
CTAACGGCCTCATCAAAATC+GGG 0.459265 1_4:+68980762 None:intergenic
CAAATAATAACAAGAGTTCA+AGG 0.463848 1_4:-68980368 Msa0180990:three_prime_UTR
GACGGTGGAGGAGTGGTGGT+GGG 0.471017 1_4:+68986766 None:intergenic
AAGAGCTTGCTGAGAACACT+AGG 0.471435 1_4:-68980977 Msa0180990:CDS
GAATGAGGAGCAGTGGTTGC+CGG 0.473808 1_4:+68986693 None:intergenic
GTAATGCTTAAAACAAACTT+TGG 0.474936 1_4:-68980735 Msa0180990:CDS
AACTTTGCAAACAACCTCCT+TGG 0.484378 1_4:-68980876 Msa0180990:CDS
AGGTTCTGCTGTCGATTACA+TGG 0.485297 1_4:-68980946 Msa0180990:CDS
ATTCAAATAAGATGCTACTT+AGG 0.485356 1_4:-68980058 Msa0180990:three_prime_UTR
TTACCTCCTCGGGAGTCAAT+GGG 0.488237 1_4:+68981323 None:intergenic
TCAGCTAACCGGTGTGAAAA+GGG 0.491222 1_4:+68983046 None:intergenic
TTAGTCGTGTAGACGATAGA+AGG 0.491640 1_4:-68980321 Msa0180990:three_prime_UTR
CACATTATTAGTTCTACTGA+TGG 0.493926 1_4:-68980402 Msa0180990:three_prime_UTR
TTTACATGCAGTGGTTTCCA+TGG 0.495392 1_4:-68983359 Msa0180990:intron
GGATATATAGGGGTTATTTG+TGG 0.495758 1_4:-68980535 Msa0180990:three_prime_UTR
TGGATCCTGTAATAGGAGTT+CGG 0.497705 1_4:+68980450 None:intergenic
CCATTCTGACGGTGAAGTCC+AGG 0.499200 1_4:+68986520 None:intergenic
CAGCTGGAGAATTGTTTGGT+GGG 0.499288 1_4:-68981070 Msa0180990:CDS
GTCTAAAATTTACCTTCTCA+TGG 0.499633 1_4:+68986611 None:intergenic
ATTGGGTAGAGAGCAATGTC+TGG 0.500737 1_4:-68980282 Msa0180990:three_prime_UTR
GAAAGGGCGGTTGACGGTGG+AGG 0.506219 1_4:+68986754 None:intergenic
ATCTGAGAAAGGGCGGTTGA+CGG 0.506420 1_4:+68986748 None:intergenic
ACCAGGATATATCTTGCAGC+TGG 0.508790 1_4:-68981086 Msa0180990:CDS
GCTCCTCCGAGTAAGACTAA+TGG 0.508887 1_4:-68986086 Msa0180990:CDS
TCCATTTCTCTAACCGTCAC+CGG 0.512492 1_4:-68986712 Msa0180990:five_prime_UTR
GGCGGTTGACGGTGGAGGAG+TGG 0.513045 1_4:+68986759 None:intergenic
CGATGACGGTCGCCAACCAC+CGG 0.513924 1_4:+68986240 None:intergenic
TCGGGAGAAACACGCTTATG+AGG 0.515335 1_4:+68980708 None:intergenic
ACTCCTTCTGGCATGATGAC+AGG 0.515369 1_4:-68985315 Msa0180990:intron
CATTAACATCAGTTTCAAGT+AGG 0.516115 1_4:+68980090 None:intergenic
GAAGATCATACGGATTGATT+GGG 0.516279 1_4:-68980299 Msa0180990:three_prime_UTR
CATACATCTTCGGTTTGAGA+TGG 0.516387 1_4:-68982891 Msa0180990:CDS
TCCAGCTGCAAGATATATCC+TGG 0.517649 1_4:+68981085 None:intergenic
CTAGAGATGCTCCTATAAGT+TGG 0.519061 1_4:-68983123 Msa0180990:CDS
CCTGGACTTCACCGTCAGAA+TGG 0.520574 1_4:-68986520 Msa0180990:CDS
GAACTGTGATTCTCAAGTCT+AGG 0.531519 1_4:+68981014 None:intergenic
TGATGCTCTCAAGAAAATGA+AGG 0.532179 1_4:-68983092 Msa0180990:CDS
AGCTGGAGAATTGTTTGGTG+GGG 0.534335 1_4:-68981069 Msa0180990:CDS
CAGAAATTTCATCTGTCACT+AGG 0.534686 1_4:+68980213 None:intergenic
CCGAAGATGTATGGACATGA+AGG 0.541002 1_4:+68982901 None:intergenic
CGATGTGTCTTCCATTCTGA+CGG 0.542650 1_4:+68986509 None:intergenic
AACTGTGATTCTCAAGTCTA+GGG 0.546837 1_4:+68981015 None:intergenic
GCAGCTGGAGAATTGTTTGG+TGG 0.547573 1_4:-68981071 Msa0180990:CDS
TTTAAGCATTACTTTCCTAA+CGG 0.550039 1_4:+68980746 None:intergenic
ACGATAGAAGGAAGATCATA+CGG 0.550774 1_4:-68980309 Msa0180990:three_prime_UTR
TCCACAGTAATGAACTTCTG+TGG 0.553047 1_4:-68980489 Msa0180990:three_prime_UTR
TGAGTTTACAGTGAAGAATG+AGG 0.554837 1_4:+68986678 None:intergenic
GGAGCAGTGGTTGCCGGTGA+CGG 0.559327 1_4:+68986699 None:intergenic
ATCGGAGGATCAGGATTCAA+AGG 0.560767 1_4:-68986490 Msa0180990:CDS
GCATGAAAATGTCAGAAAGA+AGG 0.561934 1_4:+68980919 None:intergenic
AAACTCTACACAAGCTTGAG+TGG 0.562467 1_4:-68980556 Msa0180990:exon
TTGCTTGGGCCATCATAGGT+TGG 0.563703 1_4:+68980897 None:intergenic
CATCAGTAGAACTAATAATG+TGG 0.565699 1_4:+68980403 None:intergenic
CCGTGTCGGAGATCTGAGAA+AGG 0.567165 1_4:+68986737 None:intergenic
GCAATGCTGATTCCGGTGGT+TGG 0.569539 1_4:-68986252 Msa0180990:CDS
ATCCTGAGTACCAAAGGTTG+AGG 0.570587 1_4:-68983012 Msa0180990:CDS
AGTCAATGGGCATTTGCCGA+TGG 0.571393 1_4:+68981336 None:intergenic
CTTTGATATATTTACACCTG+AGG 0.580997 1_4:-68981431 Msa0180990:CDS
AGAGCTTGCTGAGAACACTA+GGG 0.583230 1_4:-68980976 Msa0180990:CDS
ATCAGTAGAACTAATAATGT+GGG 0.583978 1_4:+68980404 None:intergenic
CATAATAAAGGCGATGACCA+AGG 0.584303 1_4:+68980859 None:intergenic
AAATAGCCATTAGTCTTACT+CGG 0.584605 1_4:+68986080 None:intergenic
CAGTGAAGAATGAGGAGCAG+TGG 0.586719 1_4:+68986686 None:intergenic
TGGATATGTTGTCATTTGCT+GGG 0.589516 1_4:-68982871 Msa0180990:intron
CCACAGTAATGAACTTCTGT+GGG 0.594147 1_4:-68980488 Msa0180990:three_prime_UTR
TTGACAATCCTGAGTACCAA+AGG 0.598187 1_4:-68983018 Msa0180990:CDS
TGAGAACGCGGCGACGATGA+CGG 0.602998 1_4:+68986226 None:intergenic
TCGTCTACACGACTAAATCA+GGG 0.605337 1_4:+68980328 None:intergenic
CTCAAGAAAATGAAGGAACA+TGG 0.606285 1_4:-68983085 Msa0180990:CDS
GCTCAACATCATAGATACCA+TGG 0.609063 1_4:+68983342 None:intergenic
CGTGTCGGAGATCTGAGAAA+GGG 0.609339 1_4:+68986738 None:intergenic
TATAATGAAAGAAGAGCCAT+CGG 0.611176 1_4:-68981352 Msa0180990:CDS
TAAAATTTACCTTCTCATGG+TGG 0.612441 1_4:+68986614 None:intergenic
TCTCCCTATCAATGAAAATG+GGG 0.612552 1_4:+68980796 None:intergenic
TGAGAAAGGGCGGTTGACGG+TGG 0.614214 1_4:+68986751 None:intergenic
TAGAGAAATGGACACCGTGT+CGG 0.617302 1_4:+68986723 None:intergenic
TATTTGCGTGTTCGATGTAA+CGG 0.619867 1_4:-68986062 Msa0180990:CDS
ATTAAGTCTCCACCATGAGA+AGG 0.622750 1_4:-68986623 Msa0180990:intron
CCCACAGAAGTTCATTACTG+TGG 0.629627 1_4:+68980488 None:intergenic
ATACCTGTCATCATGCCAGA+AGG 0.634087 1_4:+68985312 None:intergenic
AGAATTTGTATAGAAAGACT+CGG 0.634296 1_4:+68980689 None:intergenic
ATATTTAAAACATCATTGGG+TGG 0.634628 1_4:+68980615 None:intergenic
TTATAGGAGCATCTCTAGGG+GGG 0.634968 1_4:+68983128 None:intergenic
GTGTACAATGTGCATCCGAA+AGG 0.637901 1_4:-68980250 Msa0180990:three_prime_UTR
GAATTTGTATAGAAAGACTC+GGG 0.640294 1_4:+68980690 None:intergenic
CTCCCTATCAATGAAAATGG+GGG 0.642427 1_4:+68980797 None:intergenic
ACTTATAGGAGCATCTCTAG+GGG 0.644818 1_4:+68983126 None:intergenic
GTTGATAAGCTACGTGCACA+AGG 0.647748 1_4:-68982926 Msa0180990:CDS
AAGCTTGAGTGGATATATAG+GGG 0.649342 1_4:-68980545 Msa0180990:exon
TGGAGCAATGCTGATTCCGG+TGG 0.651971 1_4:-68986256 Msa0180990:CDS
CGAAGATGTATGGACATGAA+GGG 0.654639 1_4:+68982902 None:intergenic
GTCGGAGATCTGAGAAAGGG+CGG 0.659795 1_4:+68986741 None:intergenic
TTGCGTGTTCGATGTAACGG+TGG 0.668128 1_4:-68986059 Msa0180990:CDS
CTTATAGGAGCATCTCTAGG+GGG 0.668584 1_4:+68983127 None:intergenic
CCTTTCTCAGATCTCCGACA+CGG 0.671903 1_4:-68986737 Msa0180990:five_prime_UTR
TAACGGCCTCATCAAAATCG+GGG 0.672059 1_4:+68980763 None:intergenic
CTAATGCTGTTCTTGCTGCG+CGG 0.678273 1_4:-68985378 Msa0180990:CDS
CGTCAGAATGGAAGACACAT+CGG 0.681405 1_4:-68986508 Msa0180990:CDS
ATGCCCATTGACTCCCGAGG+AGG 0.681727 1_4:-68981326 Msa0180990:intron
GAGCTTGCTGAGAACACTAG+GGG 0.690781 1_4:-68980975 Msa0180990:CDS
CGTCTACACGACTAAATCAG+GGG 0.696646 1_4:+68980329 None:intergenic
CAAATGCCCATTGACTCCCG+AGG 0.706848 1_4:-68981329 Msa0180990:CDS
ATACGGGGCCAATGAGAACG+CGG 0.715796 1_4:+68986214 None:intergenic
CAGAATGGAAGACACATCGG+AGG 0.720435 1_4:-68986505 Msa0180990:CDS
AGCACTTCATTAGAACACTG+AGG 0.734261 1_4:-68983322 Msa0180990:CDS
AGCTTGCTGAGAACACTAGG+GGG 0.740298 1_4:-68980974 Msa0180990:CDS
AATAAAGGCGATGACCAAGG+AGG 0.741984 1_4:+68980862 None:intergenic
TAGCCATTAGTCTTACTCGG+AGG 0.748011 1_4:+68986083 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTGTTTATTGT+TGG - chr1_4:68980539-68980558 Msa0180990:three_prime_UTR 10.0%
!!! TTTTTTTTTTGTTTATTGTT+GGG - chr1_4:68980540-68980559 Msa0180990:three_prime_UTR 10.0%
!!! ATATTTAATTGTTTTTGTTT+TGG - chr1_4:68983305-68983324 Msa0180990:CDS 10.0%
!! TAATAATGTAATATGTTATT+CGG - chr1_4:68986720-68986739 Msa0180990:five_prime_UTR 10.0%
!! AAAAATATTTCCAAAAAGAA+TGG + chr1_4:68981110-68981129 None:intergenic 15.0%
!! AAAATAATATATACCGATAT+AGG - chr1_4:68981322-68981341 Msa0180990:intron 15.0%
!!! TGTGTTTAACTTATAATAAA+AGG - chr1_4:68982323-68982342 Msa0180990:intron 15.0%
!!! TTTGAAATCATTTTAATTTC+CGG - chr1_4:68983645-68983664 Msa0180990:intron 15.0%
!!! TAAGTTTTAATCACATTTTT+TGG - chr1_4:68984608-68984627 Msa0180990:intron 15.0%
!!! AAGTTTTAATCACATTTTTT+GGG - chr1_4:68984609-68984628 Msa0180990:intron 15.0%
!!! TATTTTCTTAAATATGCATT+TGG - chr1_4:68985194-68985213 Msa0180990:intron 15.0%
!!! ATTTTCTTAAATATGCATTT+GGG - chr1_4:68985195-68985214 Msa0180990:intron 15.0%
!!! AAACAATTTTTTTTTTGCAA+AGG + chr1_4:68985587-68985606 None:intergenic 15.0%
!!! AGAATATTTAAAACATCATT+GGG + chr1_4:68986231-68986250 None:intergenic 15.0%
!!! AATTTTCTGATAATGTGTTA+TGG - chr1_4:68980716-68980735 Msa0180990:CDS 20.0%
!!! TTTTACAGTAAGAATGAAAA+GGG + chr1_4:68980836-68980855 None:intergenic 20.0%
!!! ATTTTACAGTAAGAATGAAA+AGG + chr1_4:68980837-68980856 None:intergenic 20.0%
!!! ATGGAATTTTATGAGTATAT+AGG - chr1_4:68980860-68980879 Msa0180990:CDS 20.0%
!!! TGGAATTTTATGAGTATATA+GGG - chr1_4:68980861-68980880 Msa0180990:CDS 20.0%
!!! ATTTCTTTTTTCTTGAACAT+AGG - chr1_4:68981652-68981671 Msa0180990:intron 20.0%
!!! ATTGACTTATTATTGAAACA+TGG - chr1_4:68982257-68982276 Msa0180990:intron 20.0%
!! TTGACTTATTATTGAAACAT+GGG - chr1_4:68982258-68982277 Msa0180990:intron 20.0%
!!! TAAGTTAAACACATTTTTCT+AGG + chr1_4:68982316-68982335 None:intergenic 20.0%
!! TAACAACAAATATAACCATA+AGG + chr1_4:68982397-68982416 None:intergenic 20.0%
!!! TATATTTGTTGTTACTTCAT+TGG - chr1_4:68982403-68982422 Msa0180990:intron 20.0%
!!! ATATTTGTTGTTACTTCATT+GGG - chr1_4:68982404-68982423 Msa0180990:intron 20.0%
!!! ACTATCTTTTAACTTTATGT+GGG + chr1_4:68982898-68982917 None:intergenic 20.0%
!!! AACTATCTTTTAACTTTATG+TGG + chr1_4:68982899-68982918 None:intergenic 20.0%
!! TAAAGTTAAAAGATAGTTTC+TGG - chr1_4:68982901-68982920 Msa0180990:CDS 20.0%
!! TAAATATAAGAAACTTAGTC+TGG + chr1_4:68983292-68983311 None:intergenic 20.0%
!! TTAGAATCTTATTCTGATTT+AGG - chr1_4:68983340-68983359 Msa0180990:CDS 20.0%
!! TTGTTAAATTTGTGATGAAT+TGG - chr1_4:68983409-68983428 Msa0180990:intron 20.0%
!! TTCAGGTAGATTATAATATT+TGG - chr1_4:68983611-68983630 Msa0180990:intron 20.0%
!!! TTGAAATCATTTTAATTTCC+GGG - chr1_4:68983646-68983665 Msa0180990:intron 20.0%
!!! TAGTTTTTTATTTCTTACCA+AGG - chr1_4:68984393-68984412 Msa0180990:intron 20.0%
!!! AGTTTTTTATTTCTTACCAA+GGG - chr1_4:68984394-68984413 Msa0180990:intron 20.0%
!! AACATTCAAAAACAGTTTAA+GGG + chr1_4:68985068-68985087 None:intergenic 20.0%
!! AAACATTCAAAAACAGTTTA+AGG + chr1_4:68985069-68985088 None:intergenic 20.0%
!!! TTGAATGTTTTAGTTAACTT+TGG - chr1_4:68985079-68985098 Msa0180990:intron 20.0%
!!! TATAGAATCTGTTTTATTGA+CGG - chr1_4:68985297-68985316 Msa0180990:intron 20.0%
!!! TCATTATAGACTAGTTTTTT+AGG + chr1_4:68985476-68985495 None:intergenic 20.0%
!!! AAAAAAATTGTTTCTTTGTC+TGG - chr1_4:68985594-68985613 Msa0180990:intron 20.0%
!! TATGATGCCAATAATTTAAT+TGG - chr1_4:68985665-68985684 Msa0180990:intron 20.0%
!! TCTACATCCAATTAAATTAT+TGG + chr1_4:68985675-68985694 None:intergenic 20.0%
!!! CAGAATATTTAAAACATCAT+TGG + chr1_4:68986232-68986251 None:intergenic 20.0%
! ATAGTACTACTCTTATTATG+TGG + chr1_4:68980199-68980218 None:intergenic 25.0%
!!! CAAGAGTTTTTAATTGAGTA+TGG - chr1_4:68980684-68980703 Msa0180990:CDS 25.0%
! ATTCTTACTGTAAAATGTGA+TGG - chr1_4:68980841-68980860 Msa0180990:CDS 25.0%
!!! CTCAATATTTAGAAGTATCT+AGG + chr1_4:68980951-68980970 None:intergenic 25.0%
! AAATACATGTATCAGTCTAT+CGG + chr1_4:68980997-68981016 None:intergenic 25.0%
! TATATCCAATACTACGATAT+TGG + chr1_4:68981068-68981087 None:intergenic 25.0%
! ATAATATATACCGATATAGG+TGG - chr1_4:68981325-68981344 Msa0180990:intron 25.0%
! TAATATATACCGATATAGGT+GGG - chr1_4:68981326-68981345 Msa0180990:intron 25.0%
!! AATTTGATGAACAAGTTTTG+CGG + chr1_4:68981594-68981613 None:intergenic 25.0%
! TTCTCAATTCTTGATTCAAA+TGG - chr1_4:68981612-68981631 Msa0180990:intron 25.0%
!! AAGCTGTTGTTATTACTATT+AGG - chr1_4:68981929-68981948 Msa0180990:intron 25.0%
! AGTCAATGTATTTAAATACG+TGG + chr1_4:68982244-68982263 None:intergenic 25.0%
! GAAGTTAAAAGATAGTTTCT+GGG - chr1_4:68982455-68982474 Msa0180990:intron 25.0%
! GCATAAATTTGTGTTTAGTT+TGG - chr1_4:68982748-68982767 Msa0180990:intron 25.0%
!!! TCATTTGTTGTTACTTCATA+GGG - chr1_4:68982851-68982870 Msa0180990:intron 25.0%
!!! CTATCTTTTAACTTTATGTG+GGG + chr1_4:68982897-68982916 None:intergenic 25.0%
!! TCAGATGGATTTATATAAGT+TGG - chr1_4:68983155-68983174 Msa0180990:intron 25.0%
!! CAGATGGATTTATATAAGTT+GGG - chr1_4:68983156-68983175 Msa0180990:intron 25.0%
!! AACAGAAATTGTTCTACTTT+TGG - chr1_4:68983237-68983256 Msa0180990:intron 25.0%
! ATTCCAGAAAATGAGAAAAA+TGG - chr1_4:68983565-68983584 Msa0180990:intron 25.0%
! TGGCAAAAAGAAGAAATTAA+AGG - chr1_4:68983585-68983604 Msa0180990:intron 25.0%
!!! AAGTTTTGAACATAATATCC+CGG + chr1_4:68983667-68983686 None:intergenic 25.0%
! CTTTGAATCAAAAGAAAAAC+AGG + chr1_4:68984087-68984106 None:intergenic 25.0%
!!! TTTCTTTTGATTCAAAGCTA+TGG - chr1_4:68984090-68984109 Msa0180990:intron 25.0%
!! CAATGTTTTCTGACAAAAAT+TGG + chr1_4:68984125-68984144 None:intergenic 25.0%
!!! TTGTTTCTAAACATCTCTAA+TGG - chr1_4:68984197-68984216 Msa0180990:intron 25.0%
! ACAGAAATAGAAAGAGTAAA+AGG + chr1_4:68984235-68984254 None:intergenic 25.0%
!! ATATTTCTAAACATCTCTCT+AGG - chr1_4:68984267-68984286 Msa0180990:intron 25.0%
! CTTGTATAACTTTATAGCTA+TGG + chr1_4:68984488-68984507 None:intergenic 25.0%
! TTAATTATATCAAACACAGC+TGG + chr1_4:68984591-68984610 None:intergenic 25.0%
!!! ATTTTTTGGGCTTAACTTAA+AGG - chr1_4:68984622-68984641 Msa0180990:intron 25.0%
! CTTTAAACTCAACCATAAAA+TGG + chr1_4:68984741-68984760 None:intergenic 25.0%
!! CATTTTATGGTTGAGTTTAA+AGG - chr1_4:68984739-68984758 Msa0180990:intron 25.0%
! TTTGACCAAGAAATTGTATA+CGG - chr1_4:68984839-68984858 Msa0180990:intron 25.0%
!! GTTTTTCTCAAAGAATGATA+AGG - chr1_4:68984938-68984957 Msa0180990:intron 25.0%
!! AAAACTAATTTTTACCTCCT+CGG + chr1_4:68985531-68985550 None:intergenic 25.0%
! TTTAAGCATTACTTTCCTAA+CGG + chr1_4:68986097-68986116 None:intergenic 25.0%
! GTAATGCTTAAAACAAACTT+TGG - chr1_4:68986105-68986124 Msa0180990:intron 25.0%
! AGAATTTGTATAGAAAGACT+CGG + chr1_4:68986154-68986173 None:intergenic 25.0%
! AGTCTTTCTATACAAATTCT+TGG - chr1_4:68986154-68986173 Msa0180990:intron 25.0%
!! ATATTTAAAACATCATTGGG+TGG + chr1_4:68986228-68986247 None:intergenic 25.0%
! AAATATTCTGCATGATGAAT+TGG - chr1_4:68986242-68986261 Msa0180990:CDS 25.0%
! ATCAGTAGAACTAATAATGT+GGG + chr1_4:68986439-68986458 None:intergenic 25.0%
! CAAATAATAACAAGAGTTCA+AGG - chr1_4:68986472-68986491 Msa0180990:CDS 25.0%
! TGGCATATATGTTAGATATT+TGG - chr1_4:68986648-68986667 Msa0180990:five_prime_UTR 25.0%
!! ATTCAAATAAGATGCTACTT+AGG - chr1_4:68986782-68986801 Msa0180990:five_prime_UTR 25.0%
TAAAATTTACCTTCTCATGG+TGG + chr1_4:68980229-68980248 None:intergenic 30.0%
! GTCTAAAATTTACCTTCTCA+TGG + chr1_4:68980232-68980251 None:intergenic 30.0%
ACTACAAGAACAGATAGATA+CGG + chr1_4:68980646-68980665 None:intergenic 30.0%
!! AAATAGCCATTAGTCTTACT+CGG + chr1_4:68980763-68980782 None:intergenic 30.0%
TACGATATTGGATACTTGAT+GGG + chr1_4:68981056-68981075 None:intergenic 30.0%
AGTATCCAATATCGTAGTAT+TGG - chr1_4:68981060-68981079 Msa0180990:CDS 30.0%
! AAAGAATGGCTAAGAAGTAT+AGG + chr1_4:68981096-68981115 None:intergenic 30.0%
! TACTTCTTAGCCATTCTTTT+TGG - chr1_4:68981097-68981116 Msa0180990:CDS 30.0%
! AAGATGTATCTGAGAAGTAT+AGG + chr1_4:68981134-68981153 None:intergenic 30.0%
ATCGTATTTCGACTTAGATA+TGG + chr1_4:68981234-68981253 None:intergenic 30.0%
AATATATACCGATATAGGTG+GGG - chr1_4:68981327-68981346 Msa0180990:CDS 30.0%
GCTGTAGATTTATATATGTG+TGG - chr1_4:68981382-68981401 Msa0180990:CDS 30.0%
GTAGATTTATATATGTGTGG+TGG - chr1_4:68981385-68981404 Msa0180990:CDS 30.0%
GTAGTGATCACATTCAAATT+GGG + chr1_4:68981692-68981711 None:intergenic 30.0%
AGTAGTGATCACATTCAAAT+TGG + chr1_4:68981693-68981712 None:intergenic 30.0%
TAGGCATCTACTAACATATT+AGG - chr1_4:68981948-68981967 Msa0180990:intron 30.0%
AGTGGGTGAATAATAATCAA+CGG + chr1_4:68982059-68982078 None:intergenic 30.0%
TTGTATGGAAATCATGTAGT+GGG + chr1_4:68982076-68982095 None:intergenic 30.0%
TACATGATTTCCATACAACA+AGG - chr1_4:68982078-68982097 Msa0180990:intron 30.0%
!!! AGGAGTGCTTCTAAATTTTA+CGG + chr1_4:68982171-68982190 None:intergenic 30.0%
!!! CTATCTTTTAACTTCGTGTT+GGG + chr1_4:68982450-68982469 None:intergenic 30.0%
!!! ACTATCTTTTAACTTCGTGT+TGG + chr1_4:68982451-68982470 None:intergenic 30.0%
CGAAGTTAAAAGATAGTTTC+TGG - chr1_4:68982454-68982473 Msa0180990:intron 30.0%
TATGCTAGGATTATTATCAG+TGG - chr1_4:68982535-68982554 Msa0180990:intron 30.0%
ATGCTAGGATTATTATCAGT+GGG - chr1_4:68982536-68982555 Msa0180990:intron 30.0%
TTTATTAAAAGATGCACCCA+AGG + chr1_4:68982582-68982601 None:intergenic 30.0%
TAAAACTAGCATTAGATGCT+TGG - chr1_4:68982686-68982705 Msa0180990:intron 30.0%
ATGGACTTCTTATTGAAACA+TGG - chr1_4:68982720-68982739 Msa0180990:intron 30.0%
AGTAACAACAAATGACCATA+AGG + chr1_4:68982846-68982865 None:intergenic 30.0%
!! GTCATTTGTTGTTACTTCAT+AGG - chr1_4:68982850-68982869 Msa0180990:intron 30.0%
TTGTGTGTAAACAATATGCT+AGG - chr1_4:68982968-68982987 Msa0180990:CDS 30.0%
TATGCTAGGATTACTATCAA+TGG - chr1_4:68982982-68983001 Msa0180990:CDS 30.0%
ATGCTAGGATTACTATCAAT+GGG - chr1_4:68982983-68983002 Msa0180990:CDS 30.0%
! CACATTTCTGTATTTCTACA+AGG + chr1_4:68983207-68983226 None:intergenic 30.0%
! CTGGATATTCAAGTGAATTT+TGG + chr1_4:68983273-68983292 None:intergenic 30.0%
ATAAGATTCTAACTACCAAG+AGG + chr1_4:68983332-68983351 None:intergenic 30.0%
TTATTCTGATTTAGGAGAAG+AGG - chr1_4:68983348-68983367 Msa0180990:CDS 30.0%
AATCTTTGCAACCATAGAAA+AGG + chr1_4:68983376-68983395 None:intergenic 30.0%
AATTTAACAATCGATGAGAC+CGG + chr1_4:68983399-68983418 None:intergenic 30.0%
!!! TTTGTTTGTTTTACATGCAG+TGG - chr1_4:68983472-68983491 Msa0180990:intron 30.0%
!!! TTGCCATTTTTCTCATTTTC+TGG + chr1_4:68983571-68983590 None:intergenic 30.0%
!! GAAGAAATTAAAGGCATTTC+AGG - chr1_4:68983594-68983613 Msa0180990:intron 30.0%
TCAGTAGTATACCAACTTAT+AGG + chr1_4:68983731-68983750 None:intergenic 30.0%
TGAAAAGGGAGTAAGATAAA+TGG + chr1_4:68983783-68983802 None:intergenic 30.0%
TGACTTAGCTTCATAATATG+TGG + chr1_4:68983887-68983906 None:intergenic 30.0%
GTTCACATCAATTGAGATAT+AGG - chr1_4:68984023-68984042 Msa0180990:intron 30.0%
TAGAAAGAGTAAAAGGACTT+TGG + chr1_4:68984228-68984247 None:intergenic 30.0%
AGAAATCAGCACAATTTATG+AGG + chr1_4:68984514-68984533 None:intergenic 30.0%
CATCTCTTCTTTACAGAATA+AGG + chr1_4:68984648-68984667 None:intergenic 30.0%
! ATGAGAGAACTTCCATTTTA+TGG - chr1_4:68984726-68984745 Msa0180990:intron 30.0%
AACTGAAATCATACCTAGAT+TGG - chr1_4:68984768-68984787 Msa0180990:intron 30.0%
! AAGAATAAGTTGAGGAAAAC+AGG + chr1_4:68984909-68984928 None:intergenic 30.0%
TTACAAGCAAGAATAAGTTG+AGG + chr1_4:68984917-68984936 None:intergenic 30.0%
TGCATTAAAAAAAGTGACAG+TGG + chr1_4:68984989-68985008 None:intergenic 30.0%
AGAGAATTTCATAAACTTGC+TGG - chr1_4:68985032-68985051 Msa0180990:intron 30.0%
CTTTGATATATTTACACCTG+AGG - chr1_4:68985409-68985428 Msa0180990:intron 30.0%
TATAATGAAAGAAGAGCCAT+CGG - chr1_4:68985488-68985507 Msa0180990:intron 30.0%
! AAACTAATTTTTACCTCCTC+GGG + chr1_4:68985530-68985549 None:intergenic 30.0%
! ATCGCCTTTATTATGGTTTT+CGG - chr1_4:68985989-68986008 Msa0180990:intron 30.0%
TAGTCCGAAAACCATAATAA+AGG + chr1_4:68985996-68986015 None:intergenic 30.0%
TTCTCCCTATCAATGAAAAT+GGG + chr1_4:68986048-68986067 None:intergenic 30.0%
ATTCTCCCTATCAATGAAAA+TGG + chr1_4:68986049-68986068 None:intergenic 30.0%
! ATTTTCATTGATAGGGAGAA+TGG - chr1_4:68986048-68986067 Msa0180990:CDS 30.0%
GAATTTGTATAGAAAGACTC+GGG + chr1_4:68986153-68986172 None:intergenic 30.0%
ACAAATATGACCTGAAAATC+TGG + chr1_4:68986413-68986432 None:intergenic 30.0%
CATCAGTAGAACTAATAATG+TGG + chr1_4:68986440-68986459 None:intergenic 30.0%
!! CACATTATTAGTTCTACTGA+TGG - chr1_4:68986438-68986457 Msa0180990:CDS 30.0%
GTAACTATATAAGTGCCTTT+CGG + chr1_4:68986608-68986627 None:intergenic 30.0%
! CATTAACATCAGTTTCAAGT+AGG + chr1_4:68986753-68986772 None:intergenic 30.0%
TGAGTTTACAGTGAAGAATG+AGG + chr1_4:68980165-68980184 None:intergenic 35.0%
!! TCAATCCATTTTTCGATCAG+AGG - chr1_4:68980457-68980476 Msa0180990:three_prime_UTR 35.0%
TACAAGAACAGATAGATACG+GGG + chr1_4:68980644-68980663 None:intergenic 35.0%
CTACAAGAACAGATAGATAC+GGG + chr1_4:68980645-68980664 None:intergenic 35.0%
TATTTGCGTGTTCGATGTAA+CGG - chr1_4:68980778-68980797 Msa0180990:CDS 35.0%
AACAGTGAATGCACTAAATC+AGG + chr1_4:68980901-68980920 None:intergenic 35.0%
! GATACTTGATGGGTATGTAT+TGG + chr1_4:68981046-68981065 None:intergenic 35.0%
CTACGATATTGGATACTTGA+TGG + chr1_4:68981057-68981076 None:intergenic 35.0%
TATAACTTCCCCACCTATAT+CGG + chr1_4:68981338-68981357 None:intergenic 35.0%
!! ACCCTTTAAGGTGAAATAGT+GGG - chr1_4:68981834-68981853 Msa0180990:intron 35.0%
CTCAATTGGTAGGGATATTA+CGG + chr1_4:68981892-68981911 None:intergenic 35.0%
AACTCAACAGTTTGTAGTGA+AGG - chr1_4:68981979-68981998 Msa0180990:intron 35.0%
GTTGTATGGAAATCATGTAG+TGG + chr1_4:68982077-68982096 None:intergenic 35.0%
! ACAGTTATCTCCTTGTTGTA+TGG + chr1_4:68982091-68982110 None:intergenic 35.0%
! CTAAATTTTACGGAGGAAGT+TGG + chr1_4:68982161-68982180 None:intergenic 35.0%
! AGTGCTTCTAAATTTTACGG+AGG + chr1_4:68982168-68982187 None:intergenic 35.0%
ATAAGGTCTTTCTCAATGGA+TGG + chr1_4:68982380-68982399 None:intergenic 35.0%
ATCCATTGAGAAAGACCTTA+TGG - chr1_4:68982379-68982398 Msa0180990:intron 35.0%
AACCATAAGGTCTTTCTCAA+TGG + chr1_4:68982384-68982403 None:intergenic 35.0%
ATCTGATAGCAAGTAATTGC+TGG - chr1_4:68982491-68982510 Msa0180990:intron 35.0%
TTGTGTCGAAACAATATGCT+AGG - chr1_4:68982521-68982540 Msa0180990:intron 35.0%
! ATTTTCCATTCGATTGACCT+TGG - chr1_4:68982562-68982581 Msa0180990:intron 35.0%
! TTTTCCATTCGATTGACCTT+GGG - chr1_4:68982563-68982582 Msa0180990:intron 35.0%
ATGCTTGGTCATTTATCAGA+TGG - chr1_4:68982701-68982720 Msa0180990:intron 35.0%
ATAAGGTCTTTCTCAATGGA+TGG + chr1_4:68982380-68982399 None:intergenic 35.0%
ATCCATTGAGAAAGACCTTA+TGG - chr1_4:68982379-68982398 Msa0180990:intron 35.0%
ATCTGATAGCAAGTAATTGC+TGG - chr1_4:68982491-68982510 Msa0180990:intron 35.0%
TGCTAGGATTACTATCAATG+GGG - chr1_4:68982984-68983003 Msa0180990:CDS 35.0%
ATTTGCCATTCACTTGACAT+TGG - chr1_4:68983009-68983028 Msa0180990:CDS 35.0%
TTTGCCATTCACTTGACATT+GGG - chr1_4:68983010-68983029 Msa0180990:CDS 35.0%
TTAAACTAGCATCAGATGCT+TGG - chr1_4:68983125-68983144 Msa0180990:CDS 35.0%
ATGCTTGGTCATTTATCAGA+TGG - chr1_4:68982701-68982720 Msa0180990:intron 35.0%
!!! TGTTTTTGTTTTGGACCTCT+TGG - chr1_4:68983314-68983333 Msa0180990:CDS 35.0%
TTCTATGGTTGCAAAGATTC+CGG - chr1_4:68983377-68983396 Msa0180990:intron 35.0%
!! AACTTATAGGAGCATCTCTA+GGG + chr1_4:68983718-68983737 None:intergenic 35.0%
TGATGCTCTCAAGAAAATGA+AGG - chr1_4:68983748-68983767 Msa0180990:intron 35.0%
CTCAAGAAAATGAAGGAACA+TGG - chr1_4:68983755-68983774 Msa0180990:intron 35.0%
TGTCAATTTCTTCAGCTAAC+CGG + chr1_4:68983808-68983827 None:intergenic 35.0%
! ATGGATATGTTGTCATTTGC+TGG - chr1_4:68983968-68983987 Msa0180990:intron 35.0%
! TGGATATGTTGTCATTTGCT+GGG - chr1_4:68983969-68983988 Msa0180990:intron 35.0%
GTGAAATTTCAATCCATCAG+TGG - chr1_4:68984154-68984173 Msa0180990:intron 35.0%
! TGTAATTTGCAACTCTTTCG+TGG - chr1_4:68984315-68984334 Msa0180990:intron 35.0%
! TTTCTTACCAAGGGTACATT+TGG - chr1_4:68984403-68984422 Msa0180990:intron 35.0%
! TAGCAATCTTGATGGTATAG+TGG - chr1_4:68984447-68984466 Msa0180990:intron 35.0%
!! GTGCTGATTTCTCAAAATCA+TGG - chr1_4:68984522-68984541 Msa0180990:intron 35.0%
TCTGTAAAGAAGAGATGAAG+AGG - chr1_4:68984651-68984670 Msa0180990:intron 35.0%
GACAAGGAGATTGTTCATTT+AGG - chr1_4:68984813-68984832 Msa0180990:intron 35.0%
GTGATCCGTATACAATTTCT+TGG + chr1_4:68984847-68984866 None:intergenic 35.0%
TAACCAATGGACACAAAATC+TGG + chr1_4:68984869-68984888 None:intergenic 35.0%
! TCCATTGGTTACACACATAA+TGG - chr1_4:68984878-68984897 Msa0180990:intron 35.0%
TCCATTATGTGTGTAACCAA+TGG + chr1_4:68984882-68984901 None:intergenic 35.0%
!! GTGGATTAGAATACGGAATT+GGG + chr1_4:68984970-68984989 None:intergenic 35.0%
!! AGTGGATTAGAATACGGAAT+TGG + chr1_4:68984971-68984990 None:intergenic 35.0%
!! AGTGACAGTGGATTAGAATA+CGG + chr1_4:68984977-68984996 None:intergenic 35.0%
! TTGTTTCTTTGTCTGGCAAA+TGG - chr1_4:68985601-68985620 Msa0180990:intron 35.0%
GATTGATATGTTCTAACTGC+AGG - chr1_4:68985693-68985712 Msa0180990:intron 35.0%
AACTGTGATTCTCAAGTCTA+GGG + chr1_4:68985828-68985847 None:intergenic 35.0%
GCATGAAAATGTCAGAAAGA+AGG + chr1_4:68985924-68985943 None:intergenic 35.0%
! ATTTTCATGCCAACCTATGA+TGG - chr1_4:68985934-68985953 Msa0180990:intron 35.0%
TCTCCCTATCAATGAAAATG+GGG + chr1_4:68986047-68986066 None:intergenic 35.0%
ACAAGCTTGAGTGGATATAT+AGG - chr1_4:68986293-68986312 Msa0180990:intron 35.0%
CAAGCTTGAGTGGATATATA+GGG - chr1_4:68986294-68986313 Msa0180990:intron 35.0%
AAGCTTGAGTGGATATATAG+GGG - chr1_4:68986295-68986314 Msa0180990:intron 35.0%
GGATATATAGGGGTTATTTG+TGG - chr1_4:68986305-68986324 Msa0180990:intron 35.0%
! GAGTTCGGTCTTTTACAATT+TGG + chr1_4:68986378-68986397 None:intergenic 35.0%
GAAAATCTGGATCCTGTAAT+AGG + chr1_4:68986400-68986419 None:intergenic 35.0%
! ATTACAGGATCCAGATTTTC+AGG - chr1_4:68986400-68986419 Msa0180990:CDS 35.0%
ACGATAGAAGGAAGATCATA+CGG - chr1_4:68986531-68986550 Msa0180990:intron 35.0%
! GAAGATCATACGGATTGATT+GGG - chr1_4:68986541-68986560 Msa0180990:intron 35.0%
CAGAAATTTCATCTGTCACT+AGG + chr1_4:68986630-68986649 None:intergenic 35.0%
CTAGTGACAGATGAAATTTC+TGG - chr1_4:68986628-68986647 Msa0180990:exon 35.0%
ATTAAGTCTCCACCATGAGA+AGG - chr1_4:68980217-68980236 Msa0180990:three_prime_UTR 40.0%
ACGTACCTCTGATCGAAAAA+TGG + chr1_4:68980465-68980484 None:intergenic 40.0%
AGATCCGTTTAGAAGAGCTT+TGG - chr1_4:68980564-68980583 Msa0180990:CDS 40.0%
TGCTCCAAAGCTCTTCTAAA+CGG + chr1_4:68980571-68980590 None:intergenic 40.0%
AAGGAGTTTGCATCCAATTC+AGG + chr1_4:68981512-68981531 None:intergenic 40.0%
AATTGGATGCAAACTCCTTC+TGG - chr1_4:68981513-68981532 Msa0180990:intron 40.0%
GGCTAGAAATTCACCCTTTA+AGG - chr1_4:68981822-68981841 Msa0180990:intron 40.0%
!! CACCCTTTAAGGTGAAATAG+TGG - chr1_4:68981833-68981852 Msa0180990:intron 40.0%
CCCCACTATTTCACCTTAAA+GGG + chr1_4:68981838-68981857 None:intergenic 40.0%
!! CCCTTTAAGGTGAAATAGTG+GGG - chr1_4:68981835-68981854 Msa0180990:intron 40.0%
TCCCCACTATTTCACCTTAA+AGG + chr1_4:68981839-68981858 None:intergenic 40.0%
TGAGCTTAGCTCAATTGGTA+GGG + chr1_4:68981901-68981920 None:intergenic 40.0%
TACCAATTGAGCTAAGCTCA+CGG - chr1_4:68981901-68981920 Msa0180990:intron 40.0%
GTGAAGGATAATGCTTGTTC+TGG - chr1_4:68981995-68982014 Msa0180990:intron 40.0%
CACTGTAATGCATTCACTAC+AGG + chr1_4:68982191-68982210 None:intergenic 40.0%
CCTTGCTAAGAACATGCAAA+TGG + chr1_4:68982644-68982663 None:intergenic 40.0%
CCATTTGCATGTTCTTAGCA+AGG - chr1_4:68982641-68982660 Msa0180990:intron 40.0%
CTTTCTCAATGGATGGTCTA+AGG + chr1_4:68982373-68982392 None:intergenic 40.0%
GACCATAAGGTCTTTCTCAA+TGG + chr1_4:68982833-68982852 None:intergenic 40.0%
GCATTTGCATGTTCTTAGCA+AGG - chr1_4:68983080-68983099 Msa0180990:CDS 40.0%
! GGCGTTGCTTTATATGCAAT+AGG - chr1_4:68983430-68983449 Msa0180990:intron 40.0%
TTTACATGCAGTGGTTTCCA+TGG - chr1_4:68983481-68983500 Msa0180990:intron 40.0%
GCTCAACATCATAGATACCA+TGG + chr1_4:68983501-68983520 None:intergenic 40.0%
AGCACTTCATTAGAACACTG+AGG - chr1_4:68983518-68983537 Msa0180990:intron 40.0%
!! ACTTATAGGAGCATCTCTAG+GGG + chr1_4:68983717-68983736 None:intergenic 40.0%
!! CAACTTATAGGAGCATCTCT+AGG + chr1_4:68983719-68983738 None:intergenic 40.0%
CTAGAGATGCTCCTATAAGT+TGG - chr1_4:68983717-68983736 Msa0180990:intron 40.0%
! ATCTTACTCCCTTTTCACAC+CGG - chr1_4:68983786-68983805 Msa0180990:intron 40.0%
TTGACAATCCTGAGTACCAA+AGG - chr1_4:68983822-68983841 Msa0180990:intron 40.0%
TAACTCTACACCTCAACCTT+TGG + chr1_4:68983841-68983860 None:intergenic 40.0%
CGAAGATGTATGGACATGAA+GGG + chr1_4:68983941-68983960 None:intergenic 40.0%
CCTTCATGTCCATACATCTT+CGG - chr1_4:68983939-68983958 Msa0180990:intron 40.0%
CATCTCAAACCGAAGATGTA+TGG + chr1_4:68983951-68983970 None:intergenic 40.0%
! CATACATCTTCGGTTTGAGA+TGG - chr1_4:68983949-68983968 Msa0180990:intron 40.0%
AACTACAACAGATCCACTGA+TGG + chr1_4:68984170-68984189 None:intergenic 40.0%
! AGAGTAAAAGGACTTTGGAG+TGG + chr1_4:68984223-68984242 None:intergenic 40.0%
GTAGCTACTAGCAATCTTGA+TGG - chr1_4:68984439-68984458 Msa0180990:intron 40.0%
TCATCAACTGACAGTACACT+TGG + chr1_4:68984795-68984814 None:intergenic 40.0%
!! TGTACTGTCAGTTGATGACA+AGG - chr1_4:68984797-68984816 Msa0180990:intron 40.0%
! TCACCAGATTTTGTGTCCAT+TGG - chr1_4:68984863-68984882 Msa0180990:intron 40.0%
AAATGTGCTGCACATCAACT+GGG + chr1_4:68985124-68985143 None:intergenic 40.0%
TAAATGTGCTGCACATCAAC+TGG + chr1_4:68985125-68985144 None:intergenic 40.0%
TAAAGATACAGCCAAACGCT+CGG + chr1_4:68985239-68985258 None:intergenic 40.0%
! TTCAGAATCTTTTGCTCCTC+AGG + chr1_4:68985428-68985447 None:intergenic 40.0%
GATATGTTCTAACTGCAGGT+TGG - chr1_4:68985697-68985716 Msa0180990:intron 40.0%
!!! TGGTCTTATTTTGCGTGCAT+TGG - chr1_4:68985717-68985736 Msa0180990:intron 40.0%
!!! GGTCTTATTTTGCGTGCATT+GGG - chr1_4:68985718-68985737 Msa0180990:intron 40.0%
!! TGGGTTTTGACAATTCTACC+AGG - chr1_4:68985737-68985756 Msa0180990:intron 40.0%
CTAGGGAACAAACTTCGAAA+TGG + chr1_4:68985811-68985830 None:intergenic 40.0%
GAACTGTGATTCTCAAGTCT+AGG + chr1_4:68985829-68985848 None:intergenic 40.0%
GGTTGTTTGCAAAGTTGCTT+GGG + chr1_4:68985960-68985979 None:intergenic 40.0%
AGGTTGTTTGCAAAGTTGCT+TGG + chr1_4:68985961-68985980 None:intergenic 40.0%
AACTTTGCAAACAACCTCCT+TGG - chr1_4:68985964-68985983 Msa0180990:intron 40.0%
CATAATAAAGGCGATGACCA+AGG + chr1_4:68985984-68986003 None:intergenic 40.0%
CTTGGTCATCGCCTTTATTA+TGG - chr1_4:68985982-68986001 Msa0180990:intron 40.0%
! TTGCCCCCATTTTCATTGAT+AGG - chr1_4:68986040-68986059 Msa0180990:CDS 40.0%
! TGCCCCCATTTTCATTGATA+GGG - chr1_4:68986041-68986060 Msa0180990:CDS 40.0%
CTCCCTATCAATGAAAATGG+GGG + chr1_4:68986046-68986065 None:intergenic 40.0%
!! GATGTTTGACAGAAGCATTC+AGG + chr1_4:68986180-68986199 None:intergenic 40.0%
AAACTCTACACAAGCTTGAG+TGG - chr1_4:68986284-68986303 Msa0180990:intron 40.0%
TCCACAGTAATGAACTTCTG+TGG - chr1_4:68986351-68986370 Msa0180990:intron 40.0%
CCACAGTAATGAACTTCTGT+GGG - chr1_4:68986352-68986371 Msa0180990:intron 40.0%
AAAGACCGAACTCCTATTAC+AGG - chr1_4:68986385-68986404 Msa0180990:CDS 40.0%
TGGATCCTGTAATAGGAGTT+CGG + chr1_4:68986393-68986412 None:intergenic 40.0%
TCGTCTACACGACTAAATCA+GGG + chr1_4:68986515-68986534 None:intergenic 40.0%
ATCGTCTACACGACTAAATC+AGG + chr1_4:68986516-68986535 None:intergenic 40.0%
TTAGTCGTGTAGACGATAGA+AGG - chr1_4:68986519-68986538 Msa0180990:CDS 40.0%
! GGAAGATCATACGGATTGAT+TGG - chr1_4:68986540-68986559 Msa0180990:intron 40.0%
TAGAGAAATGGACACCGTGT+CGG + chr1_4:68980120-68980139 None:intergenic 45.0%
TCCATTTCTCTAACCGTCAC+CGG - chr1_4:68980128-68980147 Msa0180990:three_prime_UTR 45.0%
! AATGTCGATTGTTGCAGACC+TGG - chr1_4:68980302-68980321 Msa0180990:three_prime_UTR 45.0%
CGATGTGTCTTCCATTCTGA+CGG + chr1_4:68980334-68980353 None:intergenic 45.0%
CGTCAGAATGGAAGACACAT+CGG - chr1_4:68980332-68980351 Msa0180990:three_prime_UTR 45.0%
ATCGGAGGATCAGGATTCAA+AGG - chr1_4:68980350-68980369 Msa0180990:three_prime_UTR 45.0%
!! CTTTGGAGCAATGCTGATTC+CGG - chr1_4:68980581-68980600 Msa0180990:CDS 45.0%
!! TAGCCATTAGTCTTACTCGG+AGG + chr1_4:68980760-68980779 None:intergenic 45.0%
TACACTAGTGCTGCCTGAAT+TGG - chr1_4:68981496-68981515 Msa0180990:intron 45.0%
ATACCTGTCATCATGCCAGA+AGG + chr1_4:68981531-68981550 None:intergenic 45.0%
! TTTCTAGCCACTACGCTACT+TGG + chr1_4:68981811-68981830 None:intergenic 45.0%
! AGGTGAAATAGTGGGGAATC+TGG - chr1_4:68981842-68981861 Msa0180990:intron 45.0%
! GGTGAAATAGTGGGGAATCT+GGG - chr1_4:68981843-68981862 Msa0180990:intron 45.0%
! GTGAAATAGTGGGGAATCTG+GGG - chr1_4:68981844-68981863 Msa0180990:intron 45.0%
TAGGGATATTACGGTATGCC+GGG + chr1_4:68981883-68981902 None:intergenic 45.0%
GTAGGGATATTACGGTATGC+CGG + chr1_4:68981884-68981903 None:intergenic 45.0%
GTGAGCTTAGCTCAATTGGT+AGG + chr1_4:68981902-68981921 None:intergenic 45.0%
ACCAATTGAGCTAAGCTCAC+GGG - chr1_4:68981902-68981921 Msa0180990:intron 45.0%
GAAACGCAAGAATATGCACG+TGG + chr1_4:68982134-68982153 None:intergenic 45.0%
TGCACCCAATGTCAAGTGAA+TGG + chr1_4:68983017-68983036 None:intergenic 45.0%
!!! GAGAAGAGGCACCTTTTCTA+TGG - chr1_4:68983362-68983381 Msa0180990:intron 45.0%
!! TTATAGGAGCATCTCTAGGG+GGG + chr1_4:68983715-68983734 None:intergenic 45.0%
!! CTTATAGGAGCATCTCTAGG+GGG + chr1_4:68983716-68983735 None:intergenic 45.0%
TCAGCTAACCGGTGTGAAAA+GGG + chr1_4:68983797-68983816 None:intergenic 45.0%
TTCAGCTAACCGGTGTGAAA+AGG + chr1_4:68983798-68983817 None:intergenic 45.0%
ATCCTGAGTACCAAAGGTTG+AGG - chr1_4:68983828-68983847 Msa0180990:intron 45.0%
! GTTGATAAGCTACGTGCACA+AGG - chr1_4:68983914-68983933 Msa0180990:intron 45.0%
CCGAAGATGTATGGACATGA+AGG + chr1_4:68983942-68983961 None:intergenic 45.0%
AGTGTGTGCACAACATGTCT+GGG + chr1_4:68984346-68984365 None:intergenic 45.0%
AAGTGTGTGCACAACATGTC+TGG + chr1_4:68984347-68984366 None:intergenic 45.0%
TTCAGAGCCAAATGTACCCT+TGG + chr1_4:68984413-68984432 None:intergenic 45.0%
! CTGTCTGTTTTCCTAGATCC+CGG - chr1_4:68984563-68984582 Msa0180990:intron 45.0%
ATATCAAACACAGCTGGAGC+CGG + chr1_4:68984585-68984604 None:intergenic 45.0%
ATGAAGAGGTTGTCGCAACT+TGG - chr1_4:68984665-68984684 Msa0180990:intron 45.0%
TGAAGAGGTTGTCGCAACTT+GGG - chr1_4:68984666-68984685 Msa0180990:intron 45.0%
CAGTACACTTGGTCCAATCT+AGG + chr1_4:68984784-68984803 None:intergenic 45.0%
AAAGATACAGCCAAACGCTC+GGG + chr1_4:68985238-68985257 None:intergenic 45.0%
ACCAGGATATATCTTGCAGC+TGG - chr1_4:68985754-68985773 Msa0180990:intron 45.0%
TCCAGCTGCAAGATATATCC+TGG + chr1_4:68985758-68985777 None:intergenic 45.0%
CTTGCAGCTGGAGAATTGTT+TGG - chr1_4:68985766-68985785 Msa0180990:intron 45.0%
CAGCTGGAGAATTGTTTGGT+GGG - chr1_4:68985770-68985789 Msa0180990:intron 45.0%
! AGCTGGAGAATTGTTTGGTG+GGG - chr1_4:68985771-68985790 Msa0180990:intron 45.0%
!! AAGAGCTTGCTGAGAACACT+AGG - chr1_4:68985863-68985882 Msa0180990:intron 45.0%
!! AGAGCTTGCTGAGAACACTA+GGG - chr1_4:68985864-68985883 Msa0180990:intron 45.0%
! AGGTTCTGCTGTCGATTACA+TGG - chr1_4:68985894-68985913 Msa0180990:intron 45.0%
AAAGTTGCTTGGGCCATCAT+AGG + chr1_4:68985950-68985969 None:intergenic 45.0%
AATAAAGGCGATGACCAAGG+AGG + chr1_4:68985981-68986000 None:intergenic 45.0%
!! ACGAATCCCCGATTTTGATG+AGG - chr1_4:68986071-68986090 Msa0180990:CDS 45.0%
TAACGGCCTCATCAAAATCG+GGG + chr1_4:68986080-68986099 None:intergenic 45.0%
CTAACGGCCTCATCAAAATC+GGG + chr1_4:68986081-68986100 None:intergenic 45.0%
CCTAACGGCCTCATCAAAAT+CGG + chr1_4:68986082-68986101 None:intergenic 45.0%
TGGGTGGACAATTGTCTTCT+GGG + chr1_4:68986212-68986231 None:intergenic 45.0%
TTGGGTGGACAATTGTCTTC+TGG + chr1_4:68986213-68986232 None:intergenic 45.0%
CCCACAGAAGTTCATTACTG+TGG + chr1_4:68986355-68986374 None:intergenic 45.0%
CGTCTACACGACTAAATCAG+GGG + chr1_4:68986514-68986533 None:intergenic 45.0%
ATTGGGTAGAGAGCAATGTC+TGG - chr1_4:68986558-68986577 Msa0180990:intron 45.0%
GTGTACAATGTGCATCCGAA+AGG - chr1_4:68986590-68986609 Msa0180990:intron 45.0%
!!! TTATTACTTTTATATTTTTT+CGG - chr1_4:68981785-68981804 Msa0180990:intron 5.0%
ATCTGAGAAAGGGCGGTTGA+CGG + chr1_4:68980095-68980114 None:intergenic 50.0%
CGTGTCGGAGATCTGAGAAA+GGG + chr1_4:68980105-68980124 None:intergenic 50.0%
CCTTTCTCAGATCTCCGACA+CGG - chr1_4:68980103-68980122 Msa0180990:three_prime_UTR 50.0%
CAGTGAAGAATGAGGAGCAG+TGG + chr1_4:68980157-68980176 None:intergenic 50.0%
CAGAATGGAAGACACATCGG+AGG - chr1_4:68980335-68980354 Msa0180990:three_prime_UTR 50.0%
!! TTAGTCTTACTCGGAGGAGC+TGG + chr1_4:68980754-68980773 None:intergenic 50.0%
GCTCCTCCGAGTAAGACTAA+TGG - chr1_4:68980754-68980773 Msa0180990:CDS 50.0%
TTGCGTGTTCGATGTAACGG+TGG - chr1_4:68980781-68980800 Msa0180990:CDS 50.0%
CTAATGCTGTTCTTGCTGCG+CGG - chr1_4:68981462-68981481 Msa0180990:intron 50.0%
ACTCCTTCTGGCATGATGAC+AGG - chr1_4:68981525-68981544 Msa0180990:intron 50.0%
! TTTTCGGCCAAGTAGCGTAG+TGG - chr1_4:68981801-68981820 Msa0180990:intron 50.0%
AGGGATATTACGGTATGCCG+GGG + chr1_4:68981882-68981901 None:intergenic 50.0%
CCAATTGAGCTAAGCTCACG+GGG - chr1_4:68981903-68981922 Msa0180990:intron 50.0%
TGCACCCAAGGTCAATCGAA+TGG + chr1_4:68982570-68982589 None:intergenic 50.0%
CACCTCAACCTTTGGTACTC+AGG + chr1_4:68983833-68983852 None:intergenic 50.0%
TATCAAACACAGCTGGAGCC+GGG + chr1_4:68984584-68984603 None:intergenic 50.0%
AGTCAATGGGCATTTGCCGA+TGG + chr1_4:68985507-68985526 None:intergenic 50.0%
TTACCTCCTCGGGAGTCAAT+GGG + chr1_4:68985520-68985539 None:intergenic 50.0%
TTTACCTCCTCGGGAGTCAA+TGG + chr1_4:68985521-68985540 None:intergenic 50.0%
GCAGCTGGAGAATTGTTTGG+TGG - chr1_4:68985769-68985788 Msa0180990:intron 50.0%
!! GAGCTTGCTGAGAACACTAG+GGG - chr1_4:68985865-68985884 Msa0180990:intron 50.0%
!! AGCTTGCTGAGAACACTAGG+GGG - chr1_4:68985866-68985885 Msa0180990:intron 50.0%
TTGCTTGGGCCATCATAGGT+TGG + chr1_4:68985946-68985965 None:intergenic 50.0%
! GGGGCAAGAGCTTTTCTATC+AGG + chr1_4:68986027-68986046 None:intergenic 50.0%
!! CCGATTTTGATGAGGCCGTT+AGG - chr1_4:68986079-68986098 Msa0180990:CDS 50.0%
TCGGGAGAAACACGCTTATG+AGG + chr1_4:68986135-68986154 None:intergenic 50.0%
GTCGGAGATCTGAGAAAGGG+CGG + chr1_4:68980102-68980121 None:intergenic 55.0%
CCGTGTCGGAGATCTGAGAA+AGG + chr1_4:68980106-68980125 None:intergenic 55.0%
! GCCGGTGACGGTTAGAGAAA+TGG + chr1_4:68980132-68980151 None:intergenic 55.0%
GAATGAGGAGCAGTGGTTGC+CGG + chr1_4:68980150-68980169 None:intergenic 55.0%
CCATTCTGACGGTGAAGTCC+AGG + chr1_4:68980323-68980342 None:intergenic 55.0%
CCTGGACTTCACCGTCAGAA+TGG - chr1_4:68980320-68980339 Msa0180990:three_prime_UTR 55.0%
GGAAGACACATCGGAGGATC+AGG - chr1_4:68980341-68980360 Msa0180990:three_prime_UTR 55.0%
!! TGGAGCAATGCTGATTCCGG+TGG - chr1_4:68980584-68980603 Msa0180990:CDS 55.0%
!! GCAATGCTGATTCCGGTGGT+TGG - chr1_4:68980588-68980607 Msa0180990:CDS 55.0%
ATACGGGGCCAATGAGAACG+CGG + chr1_4:68980629-68980648 None:intergenic 55.0%
TATTACGGTATGCCGGGGCT+GGG + chr1_4:68981877-68981896 None:intergenic 55.0%
ATATTACGGTATGCCGGGGC+TGG + chr1_4:68981878-68981897 None:intergenic 55.0%
CCCCGTGAGCTTAGCTCAAT+TGG + chr1_4:68981906-68981925 None:intergenic 55.0%
AGAGGTTGTCGCAACTTGGG+AGG - chr1_4:68984669-68984688 Msa0180990:intron 55.0%
GAGGTTGTCGCAACTTGGGA+GGG - chr1_4:68984670-68984689 Msa0180990:intron 55.0%
AGGTTGTCGCAACTTGGGAG+GGG - chr1_4:68984671-68984690 Msa0180990:intron 55.0%
! GGAGGGGTTTGGAGCTAGTA+AGG - chr1_4:68984687-68984706 Msa0180990:intron 55.0%
CCAAACGCTCGGGACATAAC+AGG + chr1_4:68985228-68985247 None:intergenic 55.0%
CCTGTTATGTCCCGAGCGTT+TGG - chr1_4:68985225-68985244 Msa0180990:intron 55.0%
!! CAAATGCCCATTGACTCCCG+AGG - chr1_4:68985511-68985530 Msa0180990:intron 55.0%
TGCTGAGAACACTAGGGGGT+TGG - chr1_4:68985870-68985889 Msa0180990:intron 55.0%
TGAGAAAGGGCGGTTGACGG+TGG + chr1_4:68980092-68980111 None:intergenic 60.0%
TGAGAACGCGGCGACGATGA+CGG + chr1_4:68980617-68980636 None:intergenic 60.0%
CATCGTCGCCGCGTTCTCAT+TGG - chr1_4:68980618-68980637 Msa0180990:CDS 60.0%
ATTACGGTATGCCGGGGCTG+GGG + chr1_4:68981876-68981895 None:intergenic 60.0%
!! TAGGAGCATCTCTAGGGGGG+CGG + chr1_4:68983712-68983731 None:intergenic 60.0%
GTCGCAACTTGGGAGGGGTT+TGG - chr1_4:68984676-68984695 Msa0180990:intron 60.0%
!! ATGCCCATTGACTCCCGAGG+AGG - chr1_4:68985514-68985533 Msa0180990:intron 60.0%
! GAGAACACTAGGGGGTTGGC+AGG - chr1_4:68985874-68985893 Msa0180990:intron 60.0%
GACGGTGGAGGAGTGGTGGT+GGG + chr1_4:68980077-68980096 None:intergenic 65.0%
TGACGGTGGAGGAGTGGTGG+TGG + chr1_4:68980078-68980097 None:intergenic 65.0%
GGTTGACGGTGGAGGAGTGG+TGG + chr1_4:68980081-68980100 None:intergenic 65.0%
GAAAGGGCGGTTGACGGTGG+AGG + chr1_4:68980089-68980108 None:intergenic 65.0%
GGAGCAGTGGTTGCCGGTGA+CGG + chr1_4:68980144-68980163 None:intergenic 65.0%
! CGATGACGGTCGCCAACCAC+CGG + chr1_4:68980603-68980622 None:intergenic 65.0%
TGGGGTTCAAACCCCAGCCC+CGG - chr1_4:68981862-68981881 Msa0180990:intron 65.0%
CACAGCTGGAGCCGGGATCT+AGG + chr1_4:68984577-68984596 None:intergenic 65.0%
GGCGGTTGACGGTGGAGGAG+TGG + chr1_4:68980084-68980103 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 68980053 68986809 68980053 ID=Msa0180990;Name=Msa0180990
chr1_4 mRNA 68980053 68986809 68980053 ID=Msa0180990-mRNA-1;Parent=Msa0180990;Name=Msa0180990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=178|1|1|1|1|1|9|507|510
chr1_4 exon 68980053 68981147 68980053 ID=Msa0180990-mRNA-1:exon:22925;Parent=Msa0180990-mRNA-1
chr1_4 exon 68981327 68981456 68981327 ID=Msa0180990-mRNA-1:exon:22924;Parent=Msa0180990-mRNA-1
chr1_4 exon 68982872 68983155 68982872 ID=Msa0180990-mRNA-1:exon:22923;Parent=Msa0180990-mRNA-1
chr1_4 exon 68983247 68983370 68983247 ID=Msa0180990-mRNA-1:exon:22922;Parent=Msa0180990-mRNA-1
chr1_4 exon 68985316 68985404 68985316 ID=Msa0180990-mRNA-1:exon:22921;Parent=Msa0180990-mRNA-1
chr1_4 exon 68986037 68986107 68986037 ID=Msa0180990-mRNA-1:exon:22920;Parent=Msa0180990-mRNA-1
chr1_4 exon 68986218 68986296 68986218 ID=Msa0180990-mRNA-1:exon:22919;Parent=Msa0180990-mRNA-1
chr1_4 exon 68986384 68986543 68986384 ID=Msa0180990-mRNA-1:exon:22918;Parent=Msa0180990-mRNA-1
chr1_4 exon 68986624 68986809 68986624 ID=Msa0180990-mRNA-1:exon:22917;Parent=Msa0180990-mRNA-1
chr1_4 five_prime_UTR 68986632 68986809 68986632 ID=Msa0180990-mRNA-1:five_prime_utr;Parent=Msa0180990-mRNA-1
chr1_4 CDS 68986624 68986631 68986624 ID=Msa0180990-mRNA-1:cds;Parent=Msa0180990-mRNA-1
chr1_4 CDS 68986384 68986543 68986384 ID=Msa0180990-mRNA-1:cds;Parent=Msa0180990-mRNA-1
chr1_4 CDS 68986218 68986296 68986218 ID=Msa0180990-mRNA-1:cds;Parent=Msa0180990-mRNA-1
chr1_4 CDS 68986037 68986107 68986037 ID=Msa0180990-mRNA-1:cds;Parent=Msa0180990-mRNA-1
chr1_4 CDS 68985316 68985404 68985316 ID=Msa0180990-mRNA-1:cds;Parent=Msa0180990-mRNA-1
chr1_4 CDS 68983247 68983370 68983247 ID=Msa0180990-mRNA-1:cds;Parent=Msa0180990-mRNA-1
chr1_4 CDS 68982872 68983155 68982872 ID=Msa0180990-mRNA-1:cds;Parent=Msa0180990-mRNA-1
chr1_4 CDS 68981327 68981456 68981327 ID=Msa0180990-mRNA-1:cds;Parent=Msa0180990-mRNA-1
chr1_4 CDS 68980560 68981147 68980560 ID=Msa0180990-mRNA-1:cds;Parent=Msa0180990-mRNA-1
chr1_4 three_prime_UTR 68980053 68980559 68980053 ID=Msa0180990-mRNA-1:three_prime_utr;Parent=Msa0180990-mRNA-1
Gene Sequence

>Msa0180990

ATGAGAAGACCTGGACTTCACCGTCAGAATGGAAGACACATCGGAGGATCAGGATTCAAAGGAATGATTGCGAAGTTATCAATTGCTGCTATCGTACTCTTGATCTGCACGTTCTCATTGTTCTACTCTTCATCAAATGAGAATGTTCAATCCATTTTTCGATCAGAGATCCGTTTAGAAGAGCTTTGGAGCAATGCTGATTCCGGTGGTTGGCGACCGTCATCGTCGCCGCGTTCTCATTGGCCCCCTCCTCCGAGTAAGACTAATGGCTATTTGCGTGTTCGATGTAACGGTGGACTGAATCAGCAGCGTACTGCAATCTCTAATGCTGTTCTTGCTGCGCGGATCATGAATGCTACACTAGTGCTGCCTGAATTGGATGCAAACTCCTTCTGGCATGATGACAGTGGTTTCCATGGTATCTATGATGTTGAGCACTTCATTAGAACACTGAGGTTTGACGTAAAAATTGTAGAAAGCATTCCAGAAAATGAGAAAAATGGCAAAAAGAAGAAATTAAAGGCATTTCAGATCCGCCCCCCTAGAGATGCTCCTATAAGTTGGTATACTACTGATGCTCTCAAGAAAATGAAGGAACATGGTGCCATTTATCTTACTCCCTTTTCACACCGGTTAGCTGAAGAAATTGACAATCCTGAGTACCAAAGGTTGAGGTGTAGAGTTAACTATCATGCTTTAAGATTCAAGCCACATATTATGAAGCTAAGTCAATCAATAGTTGATAAGCTACGTGCACAAGGACCCTTCATGTCCATACATCTTCGGTTTGAGATGGATATGTTGTCATTTGCTGGATGCTTTGATATATTTACACCTGAGGAGCAAAAGATTCTGAAGAAATATCGAGAAGAAAATTTTGCACCTAAAAAACTAGTCTATAATGAAAGAAGAGCCATCGGCAAATGCCCATTGACTCCCGAGGAGGTTGGTCTTATTTTGCGTGCATTGGGTTTTGACAATTCTACCAGGATATATCTTGCAGCTGGAGAATTGTTTGGTGGGGATCGATTTATGAATCCATTTCGAAGTTTGTTCCCTAGACTTGAGAATCACAGTTCTGTAGATCACTCTGAAGAGCTTGCTGAGAACACTAGGGGGTTGGCAGGTTCTGCTGTCGATTACATGGTCTGCCTTCTTTCTGACATTTTCATGCCAACCTATGATGGCCCAAGCAACTTTGCAAACAACCTCCTTGGTCATCGCCTTTATTATGGTTTTCGGACTACAATCAGACCTGATAGAAAAGCTCTTGCCCCCATTTTCATTGATAGGGAGAATGGACGAATCCCCGATTTTGATGAGGCCGTTAGGAAAGTAATGCTTAAAACAAACTTTGGTGAACCTCATAAGCGTGTTTCTCCCGAGTCTTTCTATACAAATTCTTGGCCTGAATGCTTCTGTCAAACATCAGCAAAGAACCCAGAAGACAATTGTCCACCCAATGATGTTTTAAATATTCTGCATGATGAATTGGTAAAAGCATCTACAGACACAAACTCTACACAAGCTTGA
Protein sequence

>Msa0180990

MRRPGLHRQNGRHIGGSGFKGMIAKLSIAAIVLLICTFSLFYSSSNENVQSIFRSEIRLEELWSNADSGGWRPSSSPRSHWPPPPSKTNGYLRVRCNGGLNQQRTAISNAVLAARIMNATLVLPELDANSFWHDDSGFHGIYDVEHFIRTLRFDVKIVESIPENEKNGKKKKLKAFQIRPPRDAPISWYTTDALKKMKEHGAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSQSIVDKLRAQGPFMSIHLRFEMDMLSFAGCFDIFTPEEQKILKKYREENFAPKKLVYNERRAIGKCPLTPEEVGLILRALGFDNSTRIYLAAGELFGGDRFMNPFRSLFPRLENHSSVDHSEELAENTRGLAGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIDRENGRIPDFDEAVRKVMLKTNFGEPHKRVSPESFYTNSWPECFCQTSAKNPEDNCPPNDVLNILHDELVKASTDTNSTQA*