AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0134110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134110 MtrunA17_Chr1g0204121 98.431 510 8 0 1 510 1 510 0.0 1051
Msa0134110 MtrunA17_Chr1g0204141 91.634 514 38 2 1 510 1 513 0.0 980
Msa0134110 MtrunA17_Chr4g0042711 39.355 465 256 12 29 477 38 492 6.00e-98 305
Msa0134110 MtrunA17_Chr5g0417871 37.161 479 264 12 29 485 19 482 4.61e-91 286
Msa0134110 MtrunA17_Chr5g0426591 36.281 441 244 9 61 476 85 513 4.01e-89 283
Msa0134110 MtrunA17_Chr3g0143821 39.302 430 246 10 61 484 82 502 4.06e-89 284
Msa0134110 MtrunA17_Chr3g0129981 39.140 442 233 10 61 479 88 516 1.51e-88 281
Msa0134110 MtrunA17_Chr4g0070551 39.310 435 229 11 61 476 201 619 1.91e-88 283
Msa0134110 MtrunA17_Chr4g0056061 41.176 391 219 6 88 475 108 490 1.08e-86 276
Msa0134110 MtrunA17_Chr2g0307971 38.835 412 237 7 73 473 100 507 1.20e-85 273
Msa0134110 MtrunA17_Chr5g0412251 36.123 454 246 11 58 475 57 502 4.44e-85 271
Msa0134110 MtrunA17_Chr4g0061781 40.191 418 210 12 82 473 105 508 6.67e-85 271
Msa0134110 MtrunA17_Chr6g0455571 40.587 409 226 8 72 467 98 502 7.24e-85 271
Msa0134110 MtrunA17_Chr5g0399311 42.276 369 206 5 88 455 124 486 1.10e-84 271
Msa0134110 MtrunA17_Chr5g0436321 40.494 405 210 11 88 475 161 551 1.90e-84 271
Msa0134110 MtrunA17_Chr3g0132371 36.735 441 245 9 60 478 114 542 3.40e-84 270
Msa0134110 MtrunA17_Chr5g0448581 37.705 427 244 10 61 478 90 503 3.54e-84 271
Msa0134110 MtrunA17_Chr4g0008451 37.327 434 241 10 61 477 205 624 6.14e-84 272
Msa0134110 MtrunA17_Chr3g0132951 36.052 466 253 13 49 476 59 517 1.60e-83 268
Msa0134110 MtrunA17_Chr3g0123521 35.321 436 256 10 62 476 119 549 2.81e-82 265
Msa0134110 MtrunA17_Chr1g0160781 37.358 439 244 12 59 477 122 549 8.15e-81 261
Msa0134110 MtrunA17_Chr4g0043911 35.217 460 261 13 41 477 105 550 1.51e-78 256
Msa0134110 MtrunA17_Chr3g0077321 35.320 453 250 15 59 484 119 555 1.89e-78 256
Msa0134110 MtrunA17_Chr5g0424241 37.136 412 223 11 89 474 158 559 1.47e-72 241
Msa0134110 MtrunA17_Chr3g0087291 31.308 428 273 9 61 477 142 559 2.48e-67 226
Msa0134110 MtrunA17_Chr4g0010511 32.634 429 266 9 61 477 202 619 1.66e-65 223
Msa0134110 MtrunA17_Chr2g0284071 31.692 467 257 15 61 475 185 641 2.49e-63 218
Msa0134110 MtrunA17_Chr4g0075311 33.619 467 251 13 60 476 136 593 1.50e-62 214
Msa0134110 MtrunA17_Chr7g0220381 32.615 325 193 8 58 367 77 390 6.15e-49 179
Msa0134110 MtrunA17_Chr1g0146501 32.239 335 207 7 52 369 53 384 8.85e-46 170
Msa0134110 MtrunA17_Chr4g0003561 28.538 424 263 14 61 475 47 439 2.46e-44 162
Msa0134110 MtrunA17_Chr3g0127811 32.550 298 177 7 84 369 59 344 8.75e-41 153
Msa0134110 MtrunA17_Chr7g0240241 43.750 112 57 1 250 355 2 113 1.57e-24 99.0
Msa0134110 MtrunA17_Chr4g0002361 21.958 378 242 14 57 419 50 389 5.54e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134110 AT1G04910.1 77.626 514 108 3 1 508 1 513 0.0 816
Msa0134110 AT1G14020.1 39.750 400 223 8 88 475 91 484 1.05e-88 281
Msa0134110 AT5G35570.1 39.955 443 229 14 55 477 218 643 1.62e-87 282
Msa0134110 AT5G64600.1 37.838 444 230 12 61 476 91 516 5.92e-87 277
Msa0134110 AT4G24530.1 36.784 454 241 11 61 477 75 519 6.14e-86 275
Msa0134110 AT2G37980.1 37.808 447 245 11 49 477 187 618 6.76e-86 278
Msa0134110 AT2G03280.1 40.100 399 220 9 88 473 88 480 7.26e-86 273
Msa0134110 AT5G15740.1 40.000 405 223 9 84 473 99 498 8.77e-86 274
Msa0134110 AT4G38390.1 39.747 395 228 7 86 477 121 508 2.42e-85 274
Msa0134110 AT5G65470.1 35.575 461 251 12 54 476 52 504 4.32e-84 269
Msa0134110 AT5G01100.1 38.901 455 239 13 45 477 174 611 7.55e-84 272
Msa0134110 AT3G54100.1 36.986 438 241 11 59 477 193 614 2.22e-83 271
Msa0134110 AT1G22460.1 36.674 439 244 11 59 475 132 558 9.02e-83 268
Msa0134110 AT3G02250.1 36.062 452 257 11 49 473 52 498 2.54e-81 262
Msa0134110 AT1G20550.1 38.903 401 226 12 86 479 107 495 3.85e-81 263
Msa0134110 AT3G26370.1 35.862 435 253 10 63 476 128 557 4.10e-81 263
Msa0134110 AT2G03280.2 37.619 420 217 9 88 467 88 502 9.21e-80 258
Msa0134110 AT4G16650.2 40.816 392 219 9 88 475 122 504 1.82e-79 258
Msa0134110 AT4G16650.1 40.816 392 219 9 88 475 122 504 1.82e-79 258
Msa0134110 AT2G01480.1 36.344 454 249 15 59 487 127 565 3.90e-78 255
Msa0134110 AT1G76270.1 37.905 401 230 12 86 479 104 492 1.30e-77 254
Msa0134110 AT2G01480.2 38.832 394 203 13 59 428 127 506 2.02e-77 253
Msa0134110 AT1G35510.1 33.135 504 284 14 26 484 71 566 8.41e-77 252
Msa0134110 AT1G14970.2 35.455 440 251 14 57 475 6 433 4.90e-75 244
Msa0134110 AT1G38065.1 37.046 413 224 11 88 474 36 438 1.44e-74 243
Msa0134110 AT1G38065.2 37.046 413 224 11 88 474 26 428 1.63e-74 243
Msa0134110 AT1G14970.3 37.010 408 228 12 88 475 9 407 1.96e-74 241
Msa0134110 AT1G14970.1 35.385 455 257 14 48 475 109 553 9.80e-74 244
Msa0134110 AT1G38131.1 37.046 413 224 11 88 474 155 557 2.32e-73 243
Msa0134110 AT5G63390.1 33.411 431 259 11 60 475 132 549 1.84e-69 232
Msa0134110 AT2G44500.1 32.864 426 264 9 61 474 146 561 9.50e-69 231
Msa0134110 AT3G07900.1 31.776 428 272 9 61 477 157 575 5.55e-64 218
Msa0134110 AT1G11990.1 30.909 440 282 8 54 476 156 590 5.09e-63 216
Msa0134110 AT1G62330.1 31.466 464 262 11 60 474 193 649 7.60e-63 217
Msa0134110 AT1G29200.4 33.949 433 233 11 88 475 70 494 2.21e-59 204
Msa0134110 AT1G29200.1 33.949 433 233 11 88 475 70 494 2.21e-59 204
Msa0134110 AT1G29200.2 31.066 544 280 16 19 475 75 610 5.86e-59 206
Msa0134110 AT1G11990.2 28.333 480 285 8 51 476 138 612 1.29e-57 202
Msa0134110 AT1G29200.3 33.724 427 230 11 94 475 2 420 4.70e-57 196
Msa0134110 AT3G03810.2 33.421 380 209 10 28 369 10 383 1.09e-55 197
Msa0134110 AT3G03810.1 33.421 380 209 10 28 369 10 383 1.09e-55 197
Msa0134110 AT1G52630.1 30.140 428 261 13 55 475 40 436 7.94e-51 180
Msa0134110 AT3G30300.2 33.013 312 192 7 73 369 85 394 6.11e-48 176
Msa0134110 AT3G30300.1 33.013 312 192 7 73 369 85 394 6.11e-48 176
Msa0134110 AT3G26370.2 38.843 242 137 4 63 293 128 369 1.61e-46 167
Msa0134110 AT2G44500.2 34.470 264 160 4 61 316 146 404 5.92e-43 158
Msa0134110 AT1G52630.2 28.307 378 234 12 104 475 2 348 3.45e-36 138
Msa0134110 AT3G21190.1 24.339 378 216 15 81 439 79 405 2.33e-18 87.8
Msa0134110 AT1G51630.1 25.072 347 201 12 88 419 91 393 5.27e-18 86.7

Find 162 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATATATGTTAGATATT+TGG 0.154327 1_3:+65576575 Msa0134110:three_prime_UTR
TTGGGTGGACAATTGTCTTC+TGG 0.181926 1_3:-65576137 None:intergenic
GAAGAAATTAAAGGCATTTC+AGG 0.211451 1_3:+65573523 Msa0134110:CDS
ATTCTCCCTATCAATGAAAA+TGG 0.236334 1_3:-65575973 None:intergenic
CTTGGTCATCGCCTTTATTA+TGG 0.252041 1_3:+65575909 Msa0134110:CDS
CTAGTGACAGATGAAATTTC+TGG 0.266164 1_3:+65576555 Msa0134110:three_prime_UTR
AGTCTTTCTATACAAATTCT+TGG 0.285777 1_3:+65576081 Msa0134110:CDS
TAATAATGTAATATGTTATT+CGG 0.292591 1_3:+65576647 Msa0134110:three_prime_UTR
GCCGGTGACGGTTAGATAAA+TGG 0.293904 1_3:-65570057 None:intergenic
TGGGTGGACAATTGTCTTCT+GGG 0.294103 1_3:-65576136 None:intergenic
AAATATTCTGCATGATGAAT+TGG 0.310357 1_3:+65576169 Msa0134110:CDS
AAGGAGTTTGCATCCAATTC+AGG 0.312722 1_3:-65571440 None:intergenic
AATTGGATGCAAACTCCTTC+TGG 0.314006 1_3:+65571444 Msa0134110:CDS
CAGAATATTTAAAACATCAT+TGG 0.318046 1_3:-65576156 None:intergenic
GAAAATCTGGATCCTGTAAT+AGG 0.319863 1_3:-65576324 None:intergenic
ATCGTCTACACGACTAAATC+AGG 0.331712 1_3:-65576440 None:intergenic
ACAAATATGACCTGAAAATC+TGG 0.333258 1_3:-65576337 None:intergenic
TCAGTAGTATACCAACTTAT+AGG 0.339678 1_3:-65573657 None:intergenic
GATGTTTGACAGAAGCATTC+AGG 0.344083 1_3:-65576104 None:intergenic
ACAAGCTTGAGTGGATATAT+AGG 0.349401 1_3:+65576220 Msa0134110:exon
CAAGCTTGAGTGGATATATA+GGG 0.351376 1_3:+65576221 Msa0134110:exon
CTTTGGAGCAATGCTGATTC+CGG 0.352641 1_3:+65570509 Msa0134110:CDS
CCTAACGGCCTCATCAAAAT+CGG 0.368288 1_3:-65576006 None:intergenic
AAAGACCGAACTCCTATTAC+AGG 0.372314 1_3:+65576312 Msa0134110:three_prime_UTR
GGAAGATCATACGGATTGAT+TGG 0.375327 1_3:+65576467 Msa0134110:three_prime_UTR
ATGGATATGTTGTCATTTGC+TGG 0.382372 1_3:+65573897 Msa0134110:CDS
TGAAAAGGGAGTAAGATAAA+TGG 0.392886 1_3:-65573709 None:intergenic
TAGTCCGAAAACCATAATAA+AGG 0.394892 1_3:-65575920 None:intergenic
TACACTAGTGCTGCCTGAAT+TGG 0.395186 1_3:+65571427 Msa0134110:CDS
TTCTCCCTATCAATGAAAAT+GGG 0.403139 1_3:-65575972 None:intergenic
TAACTCTACACCTCAACCTT+TGG 0.403900 1_3:-65573767 None:intergenic
GGAAGACACATCGGAGGATC+AGG 0.408537 1_3:+65570269 Msa0134110:CDS
TTTACCTCCTCGGGAGTCAA+TGG 0.416227 1_3:-65575446 None:intergenic
CCTTCATGTCCATACATCTT+CGG 0.416287 1_3:+65573868 Msa0134110:CDS
GGTTGTTTGCAAAGTTGCTT+GGG 0.417543 1_3:-65575884 None:intergenic
TTCAGCTAACCGGTGTGAAA+AGG 0.419566 1_3:-65573724 None:intergenic
TGTCAATTTCTTCAGCTAAC+CGG 0.425709 1_3:-65573734 None:intergenic
AAAGTTGCTTGGGCCATCAT+AGG 0.426197 1_3:-65575874 None:intergenic
TGACGGTGGAGGAGTGGTGG+TGG 0.427378 1_3:-65570003 None:intergenic
CTTGCAGCTGGAGAATTGTT+TGG 0.428527 1_3:+65575693 Msa0134110:CDS
AGAATATTTAAAACATCATT+GGG 0.428907 1_3:-65576155 None:intergenic
CATCGTCGCCGCGTTCTCAT+TGG 0.429992 1_3:+65570546 Msa0134110:CDS
CTAGGGAACAAACTTCGAAA+TGG 0.433828 1_3:-65575735 None:intergenic
CATCTCAAACCGAAGATGTA+TGG 0.438346 1_3:-65573877 None:intergenic
GGTTGACGGTGGAGGAGTGG+TGG 0.446235 1_3:-65570006 None:intergenic
TGCTCCAAAGCTCTTCTAAA+CGG 0.447361 1_3:-65570496 None:intergenic
TGACTTAGCTTCATAATATG+TGG 0.449252 1_3:-65573813 None:intergenic
AGATCCGTTTAGAAGAGCTT+TGG 0.450751 1_3:+65570492 Msa0134110:intron
CACCTCAACCTTTGGTACTC+AGG 0.452836 1_3:-65573759 None:intergenic
AACTTATAGGAGCATCTCTA+GGG 0.453270 1_3:-65573644 None:intergenic
GTAACTATATAAGTGCCTTT+CGG 0.453428 1_3:-65576532 None:intergenic
CAACTTATAGGAGCATCTCT+AGG 0.455037 1_3:-65573645 None:intergenic
AGGTTGTTTGCAAAGTTGCT+TGG 0.455901 1_3:-65575885 None:intergenic
ATAGTACTACTCTTATTATG+TGG 0.459137 1_3:-65570124 None:intergenic
CTAACGGCCTCATCAAAATC+GGG 0.459265 1_3:-65576005 None:intergenic
CAAATAATAACAAGAGTTCA+AGG 0.463848 1_3:+65576399 Msa0134110:three_prime_UTR
GACGGTGGAGGAGTGGTGGT+GGG 0.471017 1_3:-65570002 None:intergenic
AAGAGCTTGCTGAGAACACT+AGG 0.471435 1_3:+65575790 Msa0134110:CDS
GAATGAGGAGCAGTGGTTGC+CGG 0.473808 1_3:-65570075 None:intergenic
GTAATGCTTAAAACAAACTT+TGG 0.474936 1_3:+65576032 Msa0134110:CDS
AACTTTGCAAACAACCTCCT+TGG 0.484378 1_3:+65575891 Msa0134110:CDS
AGGTTCTGCTGTCGATTACA+TGG 0.485297 1_3:+65575821 Msa0134110:CDS
ATTCAAATAAGATGCTACTT+AGG 0.485356 1_3:+65576709 Msa0134110:three_prime_UTR
TTACCTCCTCGGGAGTCAAT+GGG 0.488237 1_3:-65575445 None:intergenic
TCAGCTAACCGGTGTGAAAA+GGG 0.491222 1_3:-65573723 None:intergenic
TTAGTCGTGTAGACGATAGA+AGG 0.491640 1_3:+65576446 Msa0134110:three_prime_UTR
CACATTATTAGTTCTACTGA+TGG 0.493926 1_3:+65576365 Msa0134110:three_prime_UTR
TCCATTTATCTAACCGTCAC+CGG 0.494314 1_3:+65570056 Msa0134110:five_prime_UTR
TTTACATGCAGTGGTTTCCA+TGG 0.495392 1_3:+65573410 Msa0134110:intron
GGATATATAGGGGTTATTTG+TGG 0.495758 1_3:+65576232 Msa0134110:three_prime_UTR
TGGATCCTGTAATAGGAGTT+CGG 0.497705 1_3:-65576317 None:intergenic
CCATTCTGACGGTGAAGTCC+AGG 0.499200 1_3:-65570248 None:intergenic
CAGCTGGAGAATTGTTTGGT+GGG 0.499288 1_3:+65575697 Msa0134110:CDS
GTCTAAAATTTACCTTCTCA+TGG 0.499633 1_3:-65570157 None:intergenic
ATTGGGTAGAGAGCAATGTC+TGG 0.500737 1_3:+65576485 Msa0134110:three_prime_UTR
GAAAGGGCGGTTGACGGTGG+AGG 0.506219 1_3:-65570014 None:intergenic
ATCTGAGAAAGGGCGGTTGA+CGG 0.506420 1_3:-65570020 None:intergenic
ACCAGGATATATCTTGCAGC+TGG 0.508790 1_3:+65575681 Msa0134110:CDS
GCTCCTCCGAGTAAGACTAA+TGG 0.508887 1_3:+65570682 Msa0134110:intron
GGCGGTTGACGGTGGAGGAG+TGG 0.513045 1_3:-65570009 None:intergenic
CGATGACGGTCGCCAACCAC+CGG 0.513924 1_3:-65570528 None:intergenic
TCGGGAGAAACACGCTTATG+AGG 0.515335 1_3:-65576059 None:intergenic
ACTCCTTCTGGCATGATGAC+AGG 0.515369 1_3:+65571456 Msa0134110:CDS
CATTAACATCAGTTTCAAGT+AGG 0.516115 1_3:-65576677 None:intergenic
GAAGATCATACGGATTGATT+GGG 0.516279 1_3:+65576468 Msa0134110:three_prime_UTR
CATACATCTTCGGTTTGAGA+TGG 0.516387 1_3:+65573878 Msa0134110:CDS
TCCAGCTGCAAGATATATCC+TGG 0.517649 1_3:-65575682 None:intergenic
CTAGAGATGCTCCTATAAGT+TGG 0.519061 1_3:+65573646 Msa0134110:CDS
CCTGGACTTCACCGTCAGAA+TGG 0.520574 1_3:+65570248 Msa0134110:CDS
GAACTGTGATTCTCAAGTCT+AGG 0.531519 1_3:-65575753 None:intergenic
TGATGCTCTCAAGAAAATGA+AGG 0.532179 1_3:+65573677 Msa0134110:CDS
AGCTGGAGAATTGTTTGGTG+GGG 0.534335 1_3:+65575698 Msa0134110:CDS
CAGAAATTTCATCTGTCACT+AGG 0.534686 1_3:-65576554 None:intergenic
CCGAAGATGTATGGACATGA+AGG 0.541002 1_3:-65573868 None:intergenic
CGATGTGTCTTCCATTCTGA+CGG 0.542650 1_3:-65570259 None:intergenic
AACTGTGATTCTCAAGTCTA+GGG 0.546837 1_3:-65575752 None:intergenic
GCAGCTGGAGAATTGTTTGG+TGG 0.547573 1_3:+65575696 Msa0134110:CDS
TTTAAGCATTACTTTCCTAA+CGG 0.550039 1_3:-65576021 None:intergenic
ACGATAGAAGGAAGATCATA+CGG 0.550774 1_3:+65576458 Msa0134110:three_prime_UTR
TCCACAGTAATGAACTTCTG+TGG 0.553047 1_3:+65576278 Msa0134110:three_prime_UTR
TGAGTTTACAGTGAAGAATG+AGG 0.554837 1_3:-65570090 None:intergenic
GGAGCAGTGGTTGCCGGTGA+CGG 0.559327 1_3:-65570069 None:intergenic
ATCGGAGGATCAGGATTCAA+AGG 0.560767 1_3:+65570278 Msa0134110:CDS
GCATGAAAATGTCAGAAAGA+AGG 0.561934 1_3:-65575848 None:intergenic
AAACTCTACACAAGCTTGAG+TGG 0.562467 1_3:+65576211 Msa0134110:exon
TTGCTTGGGCCATCATAGGT+TGG 0.563703 1_3:-65575870 None:intergenic
CATCAGTAGAACTAATAATG+TGG 0.565699 1_3:-65576364 None:intergenic
CCGTGTCGGAGATCTGAGAA+AGG 0.567165 1_3:-65570031 None:intergenic
GCAATGCTGATTCCGGTGGT+TGG 0.569539 1_3:+65570516 Msa0134110:CDS
ATCCTGAGTACCAAAGGTTG+AGG 0.570587 1_3:+65573757 Msa0134110:CDS
AGTCAATGGGCATTTGCCGA+TGG 0.571393 1_3:-65575432 None:intergenic
CTTTGATATATTTACACCTG+AGG 0.580997 1_3:+65575337 Msa0134110:CDS
AGAGCTTGCTGAGAACACTA+GGG 0.583230 1_3:+65575791 Msa0134110:CDS
ATCAGTAGAACTAATAATGT+GGG 0.583978 1_3:-65576363 None:intergenic
CATAATAAAGGCGATGACCA+AGG 0.584303 1_3:-65575908 None:intergenic
AAATAGCCATTAGTCTTACT+CGG 0.584605 1_3:-65570688 None:intergenic
CAGTGAAGAATGAGGAGCAG+TGG 0.586719 1_3:-65570082 None:intergenic
TAGATAAATGGACACCGTGT+CGG 0.589429 1_3:-65570045 None:intergenic
TGGATATGTTGTCATTTGCT+GGG 0.589516 1_3:+65573898 Msa0134110:CDS
CCACAGTAATGAACTTCTGT+GGG 0.594147 1_3:+65576279 Msa0134110:three_prime_UTR
TTGACAATCCTGAGTACCAA+AGG 0.598187 1_3:+65573751 Msa0134110:CDS
TGAGAACGCGGCGACGATGA+CGG 0.602998 1_3:-65570542 None:intergenic
TCGTCTACACGACTAAATCA+GGG 0.605337 1_3:-65576439 None:intergenic
CTCAAGAAAATGAAGGAACA+TGG 0.606285 1_3:+65573684 Msa0134110:CDS
GCTCAACATCATAGATACCA+TGG 0.609063 1_3:-65573427 None:intergenic
CGTGTCGGAGATCTGAGAAA+GGG 0.609339 1_3:-65570030 None:intergenic
TATAATGAAAGAAGAGCCAT+CGG 0.611176 1_3:+65575416 Msa0134110:CDS
TAAAATTTACCTTCTCATGG+TGG 0.612441 1_3:-65570154 None:intergenic
TCTCCCTATCAATGAAAATG+GGG 0.612552 1_3:-65575971 None:intergenic
TGAGAAAGGGCGGTTGACGG+TGG 0.614214 1_3:-65570017 None:intergenic
TATTTGCGTGTTCGATGTAA+CGG 0.619867 1_3:+65570706 Msa0134110:CDS
ATTAAGTCTCCACCATGAGA+AGG 0.622750 1_3:+65570145 Msa0134110:exon
CCCACAGAAGTTCATTACTG+TGG 0.629627 1_3:-65576279 None:intergenic
ATACCTGTCATCATGCCAGA+AGG 0.634087 1_3:-65571459 None:intergenic
AGAATTTGTATAGAAAGACT+CGG 0.634296 1_3:-65576078 None:intergenic
ATATTTAAAACATCATTGGG+TGG 0.634628 1_3:-65576152 None:intergenic
TTATAGGAGCATCTCTAGGG+GGG 0.634968 1_3:-65573641 None:intergenic
GTGTACAATGTGCATCCGAA+AGG 0.637901 1_3:+65576517 Msa0134110:three_prime_UTR
GAATTTGTATAGAAAGACTC+GGG 0.640294 1_3:-65576077 None:intergenic
CTCCCTATCAATGAAAATGG+GGG 0.642427 1_3:-65575970 None:intergenic
ACTTATAGGAGCATCTCTAG+GGG 0.644818 1_3:-65573643 None:intergenic
GTTGATAAGCTACGTGCACA+AGG 0.647748 1_3:+65573843 Msa0134110:CDS
AAGCTTGAGTGGATATATAG+GGG 0.649342 1_3:+65576222 Msa0134110:exon
TGGAGCAATGCTGATTCCGG+TGG 0.651971 1_3:+65570512 Msa0134110:CDS
CGAAGATGTATGGACATGAA+GGG 0.654639 1_3:-65573867 None:intergenic
GTCGGAGATCTGAGAAAGGG+CGG 0.659795 1_3:-65570027 None:intergenic
TTGCGTGTTCGATGTAACGG+TGG 0.668128 1_3:+65570709 Msa0134110:CDS
CTTATAGGAGCATCTCTAGG+GGG 0.668584 1_3:-65573642 None:intergenic
CCTTTCTCAGATCTCCGACA+CGG 0.671903 1_3:+65570031 Msa0134110:five_prime_UTR
TAACGGCCTCATCAAAATCG+GGG 0.672059 1_3:-65576004 None:intergenic
CTAATGCTGTTCTTGCTGCG+CGG 0.678273 1_3:+65571393 Msa0134110:CDS
CGTCAGAATGGAAGACACAT+CGG 0.681405 1_3:+65570260 Msa0134110:CDS
ATGCCCATTGACTCCCGAGG+AGG 0.681727 1_3:+65575442 Msa0134110:CDS
GAGCTTGCTGAGAACACTAG+GGG 0.690781 1_3:+65575792 Msa0134110:CDS
CGTCTACACGACTAAATCAG+GGG 0.696646 1_3:-65576438 None:intergenic
CAAATGCCCATTGACTCCCG+AGG 0.706848 1_3:+65575439 Msa0134110:CDS
ATACGGGGCCAATGAGAACG+CGG 0.715796 1_3:-65570554 None:intergenic
CAGAATGGAAGACACATCGG+AGG 0.720435 1_3:+65570263 Msa0134110:CDS
AGCACTTCATTAGAACACTG+AGG 0.734261 1_3:+65573447 Msa0134110:CDS
AGCTTGCTGAGAACACTAGG+GGG 0.740298 1_3:+65575793 Msa0134110:CDS
AATAAAGGCGATGACCAAGG+AGG 0.741984 1_3:-65575905 None:intergenic
TAGCCATTAGTCTTACTCGG+AGG 0.748011 1_3:-65570685 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTGTTTATTGT+TGG + chr1_3:65570467-65570486 Msa0134110:intron 10.0%
!!! TTTTTTTTTTGTTTATTGTT+GGG + chr1_3:65570468-65570487 Msa0134110:intron 10.0%
!!! ATATTTAATTGTTTTTGTTT+TGG + chr1_3:65573234-65573253 Msa0134110:intron 10.0%
!! TAATAATGTAATATGTTATT+CGG + chr1_3:65576647-65576666 Msa0134110:three_prime_UTR 10.0%
!! AAAAATATTTCCAAAAAGAA+TGG - chr1_3:65571041-65571060 None:intergenic 15.0%
!! AAAATAATATATACCGATAT+AGG + chr1_3:65571253-65571272 Msa0134110:intron 15.0%
!!! TGTGTTTAACTTATAATAAA+AGG + chr1_3:65572254-65572273 Msa0134110:intron 15.0%
!!! TTTGAAATCATTTTAATTTC+CGG + chr1_3:65573574-65573593 Msa0134110:intron 15.0%
!!! TAAGTTTTAATCACATTTTT+TGG + chr1_3:65574536-65574555 Msa0134110:intron 15.0%
!!! AAGTTTTAATCACATTTTTT+GGG + chr1_3:65574537-65574556 Msa0134110:intron 15.0%
!!! TATTTTCTTAAATATGCATT+TGG + chr1_3:65575122-65575141 Msa0134110:intron 15.0%
!!! ATTTTCTTAAATATGCATTT+GGG + chr1_3:65575123-65575142 Msa0134110:intron 15.0%
!!! AGAATATTTAAAACATCATT+GGG - chr1_3:65576158-65576177 None:intergenic 15.0%
!!! AATTTTCTGATAATGTGTTA+TGG + chr1_3:65570644-65570663 Msa0134110:intron 20.0%
!!! TTTTACAGTAAGAATGAAAA+GGG - chr1_3:65570764-65570783 None:intergenic 20.0%
!!! ATTTTACAGTAAGAATGAAA+AGG - chr1_3:65570765-65570784 None:intergenic 20.0%
!!! ATGGAATTTTATGAGTATAT+AGG + chr1_3:65570788-65570807 Msa0134110:intron 20.0%
!!! TGGAATTTTATGAGTATATA+GGG + chr1_3:65570789-65570808 Msa0134110:intron 20.0%
!!! ATTTCTTTTTTCTTGAACAT+AGG + chr1_3:65571583-65571602 Msa0134110:intron 20.0%
!!! ATTGACTTATTATTGAAACA+TGG + chr1_3:65572188-65572207 Msa0134110:intron 20.0%
!! TTGACTTATTATTGAAACAT+GGG + chr1_3:65572189-65572208 Msa0134110:intron 20.0%
!!! TAAGTTAAACACATTTTTCT+AGG - chr1_3:65572247-65572266 None:intergenic 20.0%
!! TAACAACAAATATAACCATA+AGG - chr1_3:65572328-65572347 None:intergenic 20.0%
!!! TATATTTGTTGTTACTTCAT+TGG + chr1_3:65572334-65572353 Msa0134110:intron 20.0%
!!! ATATTTGTTGTTACTTCATT+GGG + chr1_3:65572335-65572354 Msa0134110:intron 20.0%
!!! ACTATCTTTTAACTTTATGT+GGG - chr1_3:65572829-65572848 None:intergenic 20.0%
!!! AACTATCTTTTAACTTTATG+TGG - chr1_3:65572830-65572849 None:intergenic 20.0%
!! TAAAGTTAAAAGATAGTTTC+TGG + chr1_3:65572832-65572851 Msa0134110:intron 20.0%
!! TAAATATAAGAAACTTAGTC+TGG - chr1_3:65573221-65573240 None:intergenic 20.0%
!! TTAGAATCTTATTCTGATTT+AGG + chr1_3:65573269-65573288 Msa0134110:intron 20.0%
!! TTGTTAAATTTGTGATGAAT+TGG + chr1_3:65573338-65573357 Msa0134110:intron 20.0%
!! TTCAGGTAGATTATAATATT+TGG + chr1_3:65573540-65573559 Msa0134110:intron 20.0%
!!! TTGAAATCATTTTAATTTCC+GGG + chr1_3:65573575-65573594 Msa0134110:intron 20.0%
!!! TAGTTTTTTATTTCTTACCA+AGG + chr1_3:65574322-65574341 Msa0134110:intron 20.0%
!!! AGTTTTTTATTTCTTACCAA+GGG + chr1_3:65574323-65574342 Msa0134110:intron 20.0%
!! AACATTCAAAAACAGTTTAA+GGG - chr1_3:65574996-65575015 None:intergenic 20.0%
!! AAACATTCAAAAACAGTTTA+AGG - chr1_3:65574997-65575016 None:intergenic 20.0%
!!! TTGAATGTTTTAGTTAACTT+TGG + chr1_3:65575007-65575026 Msa0134110:intron 20.0%
!!! TATAGAATCTGTTTTATTGA+CGG + chr1_3:65575225-65575244 Msa0134110:intron 20.0%
!!! TCATTATAGACTAGTTTTTT+AGG - chr1_3:65575404-65575423 None:intergenic 20.0%
!!! GAAACAATTTTTTTTTGCAA+AGG - chr1_3:65575515-65575534 None:intergenic 20.0%
!!! AAAAAAATTGTTTCTTTGTC+TGG + chr1_3:65575521-65575540 Msa0134110:intron 20.0%
!! TATGATGCCAATAATTTAAT+TGG + chr1_3:65575592-65575611 Msa0134110:intron 20.0%
!! TCTACATCCAATTAAATTAT+TGG - chr1_3:65575602-65575621 None:intergenic 20.0%
!!! CAGAATATTTAAAACATCAT+TGG - chr1_3:65576159-65576178 None:intergenic 20.0%
! ATAGTACTACTCTTATTATG+TGG - chr1_3:65570127-65570146 None:intergenic 25.0%
!!! CAAGAGTTTTTAATTGAGTA+TGG + chr1_3:65570612-65570631 Msa0134110:intron 25.0%
! ATTCTTACTGTAAAATGTGA+TGG + chr1_3:65570769-65570788 Msa0134110:intron 25.0%
!!! CTCAATATTTAGAAGTATCT+AGG - chr1_3:65570879-65570898 None:intergenic 25.0%
! AAATACATGTATCAGTCTAT+CGG - chr1_3:65570925-65570944 None:intergenic 25.0%
! TATATCCAATACTACGATAT+TGG - chr1_3:65570998-65571017 None:intergenic 25.0%
! ATAATATATACCGATATAGG+AGG + chr1_3:65571256-65571275 Msa0134110:intron 25.0%
! TAATATATACCGATATAGGA+GGG + chr1_3:65571257-65571276 Msa0134110:intron 25.0%
!! AATTTGATGAACAAGTTTTG+CGG - chr1_3:65571525-65571544 None:intergenic 25.0%
! TTCTCAATTCTTGATTCAAA+TGG + chr1_3:65571543-65571562 Msa0134110:intron 25.0%
!! AAGCTGTTGTTATTACTATT+AGG + chr1_3:65571860-65571879 Msa0134110:intron 25.0%
! AGTCAATGTATTTAAATACG+TGG - chr1_3:65572175-65572194 None:intergenic 25.0%
! GAAGTTAAAAGATAGTTTCT+GGG + chr1_3:65572386-65572405 Msa0134110:intron 25.0%
! GCATAAATTTGTGTTTAGTT+TGG + chr1_3:65572679-65572698 Msa0134110:intron 25.0%
!!! TCATTTGTTGTTACTTCATA+GGG + chr1_3:65572782-65572801 Msa0134110:intron 25.0%
!!! CTATCTTTTAACTTTATGTG+GGG - chr1_3:65572828-65572847 None:intergenic 25.0%
!! TATCAGATGGATTTATAAGT+TGG + chr1_3:65573084-65573103 Msa0134110:intron 25.0%
!! ATCAGATGGATTTATAAGTT+GGG + chr1_3:65573085-65573104 Msa0134110:intron 25.0%
!! AACAGAAATTGTTCTACTTT+TGG + chr1_3:65573166-65573185 Msa0134110:intron 25.0%
! ATTCCAGAAAATGAGAAAAA+TGG + chr1_3:65573494-65573513 Msa0134110:CDS 25.0%
! TGGCAAAAAGAAGAAATTAA+AGG + chr1_3:65573514-65573533 Msa0134110:CDS 25.0%
!!! AAGTTTTGAACATAATATCC+CGG - chr1_3:65573596-65573615 None:intergenic 25.0%
! CTTTGAATCAAAAGAAAAAC+AGG - chr1_3:65574016-65574035 None:intergenic 25.0%
!!! TTTCTTTTGATTCAAAGCTA+TGG + chr1_3:65574019-65574038 Msa0134110:intron 25.0%
!! CAATGTTTTCTGACAAAAAT+TGG - chr1_3:65574054-65574073 None:intergenic 25.0%
!!! TTGTTTCTAAACATCTCTAA+TGG + chr1_3:65574126-65574145 Msa0134110:intron 25.0%
! ACAGAAATAGAAAGAGTAAA+AGG - chr1_3:65574164-65574183 None:intergenic 25.0%
!! ATATTTCTAAACATCTCTCT+AGG + chr1_3:65574196-65574215 Msa0134110:intron 25.0%
! CTTGTATAACTTTATAGCTA+TGG - chr1_3:65574417-65574436 None:intergenic 25.0%
! TTAATTATATCAAACACAGC+TGG - chr1_3:65574519-65574538 None:intergenic 25.0%
!!! ATTTTTTGGGCTTAACTTAA+AGG + chr1_3:65574550-65574569 Msa0134110:intron 25.0%
! CTTTAAACTCAACCATAAAA+TGG - chr1_3:65574669-65574688 None:intergenic 25.0%
!! CATTTTATGGTTGAGTTTAA+AGG + chr1_3:65574667-65574686 Msa0134110:intron 25.0%
! TTTGACCAAGAAATTGTATA+CGG + chr1_3:65574767-65574786 Msa0134110:intron 25.0%
!! GTTTTTCTCAAAGAATGATA+AGG + chr1_3:65574866-65574885 Msa0134110:intron 25.0%
!! AAAACTAATTTTTACCTCCT+CGG - chr1_3:65575459-65575478 None:intergenic 25.0%
! TTTAAGCATTACTTTCCTAA+CGG - chr1_3:65576024-65576043 None:intergenic 25.0%
! GTAATGCTTAAAACAAACTT+TGG + chr1_3:65576032-65576051 Msa0134110:CDS 25.0%
! AGAATTTGTATAGAAAGACT+CGG - chr1_3:65576081-65576100 None:intergenic 25.0%
! AGTCTTTCTATACAAATTCT+TGG + chr1_3:65576081-65576100 Msa0134110:CDS 25.0%
!! ATATTTAAAACATCATTGGG+TGG - chr1_3:65576155-65576174 None:intergenic 25.0%
! AAATATTCTGCATGATGAAT+TGG + chr1_3:65576169-65576188 Msa0134110:CDS 25.0%
! ATCAGTAGAACTAATAATGT+GGG - chr1_3:65576366-65576385 None:intergenic 25.0%
! CAAATAATAACAAGAGTTCA+AGG + chr1_3:65576399-65576418 Msa0134110:three_prime_UTR 25.0%
! TGGCATATATGTTAGATATT+TGG + chr1_3:65576575-65576594 Msa0134110:three_prime_UTR 25.0%
!! ATTCAAATAAGATGCTACTT+AGG + chr1_3:65576709-65576728 Msa0134110:three_prime_UTR 25.0%
TAAAATTTACCTTCTCATGG+TGG - chr1_3:65570157-65570176 None:intergenic 30.0%
! GTCTAAAATTTACCTTCTCA+TGG - chr1_3:65570160-65570179 None:intergenic 30.0%
ACTACAAGAACAGATAGATA+CGG - chr1_3:65570574-65570593 None:intergenic 30.0%
!! AAATAGCCATTAGTCTTACT+CGG - chr1_3:65570691-65570710 None:intergenic 30.0%
TACTTGATATGGGTATGTAT+TGG - chr1_3:65570974-65570993 None:intergenic 30.0%
CGATATTGGATACTTGATAT+GGG - chr1_3:65570984-65571003 None:intergenic 30.0%
ACGATATTGGATACTTGATA+TGG - chr1_3:65570985-65571004 None:intergenic 30.0%
AGTATCCAATATCGTAGTAT+TGG + chr1_3:65570990-65571009 Msa0134110:intron 30.0%
! AAAGAATGGCTAAGAAGTAT+AGG - chr1_3:65571027-65571046 None:intergenic 30.0%
! TACTTCTTAGCCATTCTTTT+TGG + chr1_3:65571028-65571047 Msa0134110:intron 30.0%
! AAGATGTATCTGAGAAGTAT+AGG - chr1_3:65571065-65571084 None:intergenic 30.0%
ATCGTATTTCGACTTAGTTA+TGG - chr1_3:65571165-65571184 None:intergenic 30.0%
AATATATACCGATATAGGAG+GGG + chr1_3:65571258-65571277 Msa0134110:intron 30.0%
GCTGTAGATTTATATATGTG+TGG + chr1_3:65571313-65571332 Msa0134110:intron 30.0%
GTAGATTTATATATGTGTGG+TGG + chr1_3:65571316-65571335 Msa0134110:intron 30.0%
GTAGTGATCACATTCAAATT+GGG - chr1_3:65571623-65571642 None:intergenic 30.0%
AGTAGTGATCACATTCAAAT+TGG - chr1_3:65571624-65571643 None:intergenic 30.0%
TAGGCATCTACTAACATATT+AGG + chr1_3:65571879-65571898 Msa0134110:intron 30.0%
AGTGGGTGAATAATAATCAA+CGG - chr1_3:65571990-65572009 None:intergenic 30.0%
TTGTATGGAAATCATGTAGT+GGG - chr1_3:65572007-65572026 None:intergenic 30.0%
TACATGATTTCCATACAACA+AGG + chr1_3:65572009-65572028 Msa0134110:intron 30.0%
!!! AGGAGTGCTTCTAAATTTTA+CGG - chr1_3:65572102-65572121 None:intergenic 30.0%
!!! CTATCTTTTAACTTCGTGTT+GGG - chr1_3:65572381-65572400 None:intergenic 30.0%
!!! ACTATCTTTTAACTTCGTGT+TGG - chr1_3:65572382-65572401 None:intergenic 30.0%
CGAAGTTAAAAGATAGTTTC+TGG + chr1_3:65572385-65572404 Msa0134110:intron 30.0%
TATGCTAGGATTATTATCAG+TGG + chr1_3:65572466-65572485 Msa0134110:intron 30.0%
ATGCTAGGATTATTATCAGT+GGG + chr1_3:65572467-65572486 Msa0134110:intron 30.0%
TTTATTAAAAGATGCACCCA+AGG - chr1_3:65572513-65572532 None:intergenic 30.0%
TAAAACTAGCATTAGATGCT+TGG + chr1_3:65572617-65572636 Msa0134110:intron 30.0%
ATGGACTTCTTATTGAAACA+TGG + chr1_3:65572651-65572670 Msa0134110:intron 30.0%
AGTAACAACAAATGACCATA+AGG - chr1_3:65572777-65572796 None:intergenic 30.0%
!! GTCATTTGTTGTTACTTCAT+AGG + chr1_3:65572781-65572800 Msa0134110:intron 30.0%
TTGTGTGTAAACAATATGCT+AGG + chr1_3:65572899-65572918 Msa0134110:intron 30.0%
TATGCTAGGATTACTATCAA+TGG + chr1_3:65572913-65572932 Msa0134110:intron 30.0%
ATGCTAGGATTACTATCAAT+GGG + chr1_3:65572914-65572933 Msa0134110:intron 30.0%
! CACATTTCTGTATTTCTACA+AGG - chr1_3:65573136-65573155 None:intergenic 30.0%
! CTGGATATTCAAGTGAATTT+TGG - chr1_3:65573202-65573221 None:intergenic 30.0%
ATAAGATTCTAACTACCAAG+AGG - chr1_3:65573261-65573280 None:intergenic 30.0%
TTATTCTGATTTAGGAGAAG+AGG + chr1_3:65573277-65573296 Msa0134110:intron 30.0%
AATCTTTGCAACCATAGAAA+AGG - chr1_3:65573305-65573324 None:intergenic 30.0%
!!! TTTGTTTGTTTTACATGCAG+TGG + chr1_3:65573401-65573420 Msa0134110:intron 30.0%
!!! TTGCCATTTTTCTCATTTTC+TGG - chr1_3:65573500-65573519 None:intergenic 30.0%
!! GAAGAAATTAAAGGCATTTC+AGG + chr1_3:65573523-65573542 Msa0134110:CDS 30.0%
TCAGTAGTATACCAACTTAT+AGG - chr1_3:65573660-65573679 None:intergenic 30.0%
TGAAAAGGGAGTAAGATAAA+TGG - chr1_3:65573712-65573731 None:intergenic 30.0%
TGACTTAGCTTCATAATATG+TGG - chr1_3:65573816-65573835 None:intergenic 30.0%
GTTCACATCAATTGAGATAT+AGG + chr1_3:65573952-65573971 Msa0134110:intron 30.0%
TAGAAAGAGTAAAAGGACTT+TGG - chr1_3:65574157-65574176 None:intergenic 30.0%
GAGAAATCAGCACAATTTAT+GGG - chr1_3:65574443-65574462 None:intergenic 30.0%
TGAGAAATCAGCACAATTTA+TGG - chr1_3:65574444-65574463 None:intergenic 30.0%
CATCTCTTCTTTACAGAATA+AGG - chr1_3:65574576-65574595 None:intergenic 30.0%
! ATGAGAGAACTTCCATTTTA+TGG + chr1_3:65574654-65574673 Msa0134110:intron 30.0%
AACTGAAATCATACCTAGAT+TGG + chr1_3:65574696-65574715 Msa0134110:intron 30.0%
! AAGAATAAGTTGAGGAAAAC+AGG - chr1_3:65574837-65574856 None:intergenic 30.0%
TTACAAGCAAGAATAAGTTG+AGG - chr1_3:65574845-65574864 None:intergenic 30.0%
TGCATTAAAAAAAGTGACAG+TGG - chr1_3:65574917-65574936 None:intergenic 30.0%
AGAGAATTTCATAAACTTGC+TGG + chr1_3:65574960-65574979 Msa0134110:intron 30.0%
CTTTGATATATTTACACCTG+AGG + chr1_3:65575337-65575356 Msa0134110:CDS 30.0%
TATAATGAAAGAAGAGCCAT+CGG + chr1_3:65575416-65575435 Msa0134110:CDS 30.0%
! AAACTAATTTTTACCTCCTC+GGG - chr1_3:65575458-65575477 None:intergenic 30.0%
! ATCGCCTTTATTATGGTTTT+CGG + chr1_3:65575916-65575935 Msa0134110:CDS 30.0%
TAGTCCGAAAACCATAATAA+AGG - chr1_3:65575923-65575942 None:intergenic 30.0%
TTCTCCCTATCAATGAAAAT+GGG - chr1_3:65575975-65575994 None:intergenic 30.0%
ATTCTCCCTATCAATGAAAA+TGG - chr1_3:65575976-65575995 None:intergenic 30.0%
! ATTTTCATTGATAGGGAGAA+TGG + chr1_3:65575975-65575994 Msa0134110:CDS 30.0%
GAATTTGTATAGAAAGACTC+GGG - chr1_3:65576080-65576099 None:intergenic 30.0%
ACAAATATGACCTGAAAATC+TGG - chr1_3:65576340-65576359 None:intergenic 30.0%
CATCAGTAGAACTAATAATG+TGG - chr1_3:65576367-65576386 None:intergenic 30.0%
!! CACATTATTAGTTCTACTGA+TGG + chr1_3:65576365-65576384 Msa0134110:three_prime_UTR 30.0%
GTAACTATATAAGTGCCTTT+CGG - chr1_3:65576535-65576554 None:intergenic 30.0%
! CATTAACATCAGTTTCAAGT+AGG - chr1_3:65576680-65576699 None:intergenic 30.0%
TGAGTTTACAGTGAAGAATG+AGG - chr1_3:65570093-65570112 None:intergenic 35.0%
!! TCAATCCATTTTTCGATCAG+AGG + chr1_3:65570385-65570404 Msa0134110:CDS 35.0%
TACAAGAACAGATAGATACG+GGG - chr1_3:65570572-65570591 None:intergenic 35.0%
CTACAAGAACAGATAGATAC+GGG - chr1_3:65570573-65570592 None:intergenic 35.0%
TATTTGCGTGTTCGATGTAA+CGG + chr1_3:65570706-65570725 Msa0134110:CDS 35.0%
AACAGTGAATGCACTAAATC+AGG - chr1_3:65570829-65570848 None:intergenic 35.0%
TATAACTTCCCCTCCTATAT+CGG - chr1_3:65571269-65571288 None:intergenic 35.0%
CAGCTAATTTCTCATAGACA+TGG - chr1_3:65571297-65571316 None:intergenic 35.0%
!! ACCCTTTAAGGTGAAATAGT+GGG + chr1_3:65571765-65571784 Msa0134110:intron 35.0%
CTCAATTGGTAGGGATATTA+CGG - chr1_3:65571823-65571842 None:intergenic 35.0%
AACTCAACAGTTTGTAGTGA+AGG + chr1_3:65571910-65571929 Msa0134110:intron 35.0%
GTTGTATGGAAATCATGTAG+TGG - chr1_3:65572008-65572027 None:intergenic 35.0%
! ACAGTTATCTCCTTGTTGTA+TGG - chr1_3:65572022-65572041 None:intergenic 35.0%
! CTAAATTTTACGGAGGAAGT+TGG - chr1_3:65572092-65572111 None:intergenic 35.0%
! AGTGCTTCTAAATTTTACGG+AGG - chr1_3:65572099-65572118 None:intergenic 35.0%
ATAAGGTCTTTCTCAATGGA+TGG - chr1_3:65572311-65572330 None:intergenic 35.0%
ATCCATTGAGAAAGACCTTA+TGG + chr1_3:65572310-65572329 Msa0134110:intron 35.0%
AACCATAAGGTCTTTCTCAA+TGG - chr1_3:65572315-65572334 None:intergenic 35.0%
ATCTGATAGCAAGTAATTGC+TGG + chr1_3:65572422-65572441 Msa0134110:intron 35.0%
TTGTGTCGAAACAATATGCT+AGG + chr1_3:65572452-65572471 Msa0134110:intron 35.0%
TGCTAGGATTATTATCAGTG+GGG + chr1_3:65572468-65572487 Msa0134110:intron 35.0%
! ATTTTCCATTCGATTGACCT+TGG + chr1_3:65572493-65572512 Msa0134110:intron 35.0%
! TTTTCCATTCGATTGACCTT+GGG + chr1_3:65572494-65572513 Msa0134110:intron 35.0%
ATGCTTGGTCATTTATCAGA+TGG + chr1_3:65572632-65572651 Msa0134110:intron 35.0%
ATAAGGTCTTTCTCAATGGA+TGG - chr1_3:65572311-65572330 None:intergenic 35.0%
ATCCATTGAGAAAGACCTTA+TGG + chr1_3:65572310-65572329 Msa0134110:intron 35.0%
ATCTGATAGCAAGTAATTGC+TGG + chr1_3:65572422-65572441 Msa0134110:intron 35.0%
TGCTAGGATTACTATCAATG+GGG + chr1_3:65572915-65572934 Msa0134110:intron 35.0%
ATTTGCCATTCACTTGACAT+TGG + chr1_3:65572940-65572959 Msa0134110:intron 35.0%
TTTGCCATTCACTTGACATT+GGG + chr1_3:65572941-65572960 Msa0134110:intron 35.0%
TTAAACTAGCATCAGATGCT+TGG + chr1_3:65573056-65573075 Msa0134110:intron 35.0%
ATGCTTGGTCATTTATCAGA+TGG + chr1_3:65572632-65572651 Msa0134110:intron 35.0%
!!! TGTTTTTGTTTTGGACCTCT+TGG + chr1_3:65573243-65573262 Msa0134110:intron 35.0%
TTCTATGGTTGCAAAGATTC+TGG + chr1_3:65573306-65573325 Msa0134110:intron 35.0%
!! AACTTATAGGAGCATCTCTA+GGG - chr1_3:65573647-65573666 None:intergenic 35.0%
TGATGCTCTCAAGAAAATGA+AGG + chr1_3:65573677-65573696 Msa0134110:CDS 35.0%
CTCAAGAAAATGAAGGAACA+TGG + chr1_3:65573684-65573703 Msa0134110:CDS 35.0%
TGTCAATTTCTTCAGCTAAC+CGG - chr1_3:65573737-65573756 None:intergenic 35.0%
! ATGGATATGTTGTCATTTGC+TGG + chr1_3:65573897-65573916 Msa0134110:CDS 35.0%
! TGGATATGTTGTCATTTGCT+GGG + chr1_3:65573898-65573917 Msa0134110:CDS 35.0%
GTGAAATTTCAATCCATCAG+TGG + chr1_3:65574083-65574102 Msa0134110:intron 35.0%
! TGTAATTTGCAACTCTTTCG+TGG + chr1_3:65574244-65574263 Msa0134110:intron 35.0%
! TTTCTTACCAAGGGTACATT+TGG + chr1_3:65574332-65574351 Msa0134110:intron 35.0%
! TAGCAATCTTGATGGTATAG+TGG + chr1_3:65574376-65574395 Msa0134110:intron 35.0%
!! GTGCTGATTTCTCAAAATCA+TGG + chr1_3:65574450-65574469 Msa0134110:intron 35.0%
TCTGTAAAGAAGAGATGAAG+AGG + chr1_3:65574579-65574598 Msa0134110:intron 35.0%
GACAAGGAGATTGTTCATTT+AGG + chr1_3:65574741-65574760 Msa0134110:intron 35.0%
GTGATCCGTATACAATTTCT+TGG - chr1_3:65574775-65574794 None:intergenic 35.0%
TAACCAATGGACACAAAATC+TGG - chr1_3:65574797-65574816 None:intergenic 35.0%
! TCCATTGGTTACACACATAA+TGG + chr1_3:65574806-65574825 Msa0134110:intron 35.0%
TCCATTATGTGTGTAACCAA+TGG - chr1_3:65574810-65574829 None:intergenic 35.0%
!! GTGGATTAGAATACGGAATT+GGG - chr1_3:65574898-65574917 None:intergenic 35.0%
!! AGTGGATTAGAATACGGAAT+TGG - chr1_3:65574899-65574918 None:intergenic 35.0%
!! AGTGACAGTGGATTAGAATA+CGG - chr1_3:65574905-65574924 None:intergenic 35.0%
! TTGTTTCTTTGTCTGGCAAA+TGG + chr1_3:65575528-65575547 Msa0134110:intron 35.0%
GATTGATATGTTCTAACTGC+AGG + chr1_3:65575620-65575639 Msa0134110:intron 35.0%
AACTGTGATTCTCAAGTCTA+GGG - chr1_3:65575755-65575774 None:intergenic 35.0%
GCATGAAAATGTCAGAAAGA+AGG - chr1_3:65575851-65575870 None:intergenic 35.0%
! ATTTTCATGCCAACCTATGA+TGG + chr1_3:65575861-65575880 Msa0134110:CDS 35.0%
TCTCCCTATCAATGAAAATG+GGG - chr1_3:65575974-65575993 None:intergenic 35.0%
ACAAGCTTGAGTGGATATAT+AGG + chr1_3:65576220-65576239 Msa0134110:exon 35.0%
CAAGCTTGAGTGGATATATA+GGG + chr1_3:65576221-65576240 Msa0134110:exon 35.0%
AAGCTTGAGTGGATATATAG+GGG + chr1_3:65576222-65576241 Msa0134110:exon 35.0%
GGATATATAGGGGTTATTTG+TGG + chr1_3:65576232-65576251 Msa0134110:three_prime_UTR 35.0%
! GAGTTCGGTCTTTTACAATT+TGG - chr1_3:65576305-65576324 None:intergenic 35.0%
GAAAATCTGGATCCTGTAAT+AGG - chr1_3:65576327-65576346 None:intergenic 35.0%
! ATTACAGGATCCAGATTTTC+AGG + chr1_3:65576327-65576346 Msa0134110:three_prime_UTR 35.0%
ACGATAGAAGGAAGATCATA+CGG + chr1_3:65576458-65576477 Msa0134110:three_prime_UTR 35.0%
! GAAGATCATACGGATTGATT+GGG + chr1_3:65576468-65576487 Msa0134110:three_prime_UTR 35.0%
CAGAAATTTCATCTGTCACT+AGG - chr1_3:65576557-65576576 None:intergenic 35.0%
CTAGTGACAGATGAAATTTC+TGG + chr1_3:65576555-65576574 Msa0134110:three_prime_UTR 35.0%
TAGATAAATGGACACCGTGT+CGG - chr1_3:65570048-65570067 None:intergenic 40.0%
TCCATTTATCTAACCGTCAC+CGG + chr1_3:65570056-65570075 Msa0134110:five_prime_UTR 40.0%
ATTAAGTCTCCACCATGAGA+AGG + chr1_3:65570145-65570164 Msa0134110:exon 40.0%
ACGTACCTCTGATCGAAAAA+TGG - chr1_3:65570393-65570412 None:intergenic 40.0%
AGATCCGTTTAGAAGAGCTT+TGG + chr1_3:65570492-65570511 Msa0134110:intron 40.0%
TGCTCCAAAGCTCTTCTAAA+CGG - chr1_3:65570499-65570518 None:intergenic 40.0%
AAGGAGTTTGCATCCAATTC+AGG - chr1_3:65571443-65571462 None:intergenic 40.0%
AATTGGATGCAAACTCCTTC+TGG + chr1_3:65571444-65571463 Msa0134110:CDS 40.0%
GGCTAGAAATTCACCCTTTA+AGG + chr1_3:65571753-65571772 Msa0134110:intron 40.0%
!! CACCCTTTAAGGTGAAATAG+TGG + chr1_3:65571764-65571783 Msa0134110:intron 40.0%
CCCCACTATTTCACCTTAAA+GGG - chr1_3:65571769-65571788 None:intergenic 40.0%
!! CCCTTTAAGGTGAAATAGTG+GGG + chr1_3:65571766-65571785 Msa0134110:intron 40.0%
TCCCCACTATTTCACCTTAA+AGG - chr1_3:65571770-65571789 None:intergenic 40.0%
TGAGCTTAGCTCAATTGGTA+GGG - chr1_3:65571832-65571851 None:intergenic 40.0%
TACCAATTGAGCTAAGCTCA+CGG + chr1_3:65571832-65571851 Msa0134110:intron 40.0%
GTGAAGGATAATGCTTGTTC+TGG + chr1_3:65571926-65571945 Msa0134110:intron 40.0%
CACTGTAATGCATTCACTAC+AGG - chr1_3:65572122-65572141 None:intergenic 40.0%
CCTTGCTAAGAACATGCAAA+TGG - chr1_3:65572575-65572594 None:intergenic 40.0%
CCATTTGCATGTTCTTAGCA+AGG + chr1_3:65572572-65572591 Msa0134110:intron 40.0%
CTTTCTCAATGGATGGTCTA+AGG - chr1_3:65572304-65572323 None:intergenic 40.0%
GACCATAAGGTCTTTCTCAA+TGG - chr1_3:65572764-65572783 None:intergenic 40.0%
GCATTTGCATGTTCTTAGCA+AGG + chr1_3:65573011-65573030 Msa0134110:intron 40.0%
! GGCGTTGCTTTATATGCAAT+AGG + chr1_3:65573359-65573378 Msa0134110:intron 40.0%
TTTACATGCAGTGGTTTCCA+TGG + chr1_3:65573410-65573429 Msa0134110:intron 40.0%
GCTCAACATCATAGATACCA+TGG - chr1_3:65573430-65573449 None:intergenic 40.0%
AGCACTTCATTAGAACACTG+AGG + chr1_3:65573447-65573466 Msa0134110:CDS 40.0%
!! ACTTATAGGAGCATCTCTAG+GGG - chr1_3:65573646-65573665 None:intergenic 40.0%
!! CAACTTATAGGAGCATCTCT+AGG - chr1_3:65573648-65573667 None:intergenic 40.0%
CTAGAGATGCTCCTATAAGT+TGG + chr1_3:65573646-65573665 Msa0134110:CDS 40.0%
! ATCTTACTCCCTTTTCACAC+CGG + chr1_3:65573715-65573734 Msa0134110:CDS 40.0%
TTGACAATCCTGAGTACCAA+AGG + chr1_3:65573751-65573770 Msa0134110:CDS 40.0%
TAACTCTACACCTCAACCTT+TGG - chr1_3:65573770-65573789 None:intergenic 40.0%
CGAAGATGTATGGACATGAA+GGG - chr1_3:65573870-65573889 None:intergenic 40.0%
CCTTCATGTCCATACATCTT+CGG + chr1_3:65573868-65573887 Msa0134110:CDS 40.0%
CATCTCAAACCGAAGATGTA+TGG - chr1_3:65573880-65573899 None:intergenic 40.0%
! CATACATCTTCGGTTTGAGA+TGG + chr1_3:65573878-65573897 Msa0134110:CDS 40.0%
AACTACAACAGATCCACTGA+TGG - chr1_3:65574099-65574118 None:intergenic 40.0%
! AGAGTAAAAGGACTTTGGAG+TGG - chr1_3:65574152-65574171 None:intergenic 40.0%
GTAGCTACTAGCAATCTTGA+TGG + chr1_3:65574368-65574387 Msa0134110:intron 40.0%
TCATCAACTGACAGTACACT+TGG - chr1_3:65574723-65574742 None:intergenic 40.0%
!! TGTACTGTCAGTTGATGACA+AGG + chr1_3:65574725-65574744 Msa0134110:intron 40.0%
! TCACCAGATTTTGTGTCCAT+TGG + chr1_3:65574791-65574810 Msa0134110:intron 40.0%
AAATGTGCTGCACATCAACT+GGG - chr1_3:65575052-65575071 None:intergenic 40.0%
TAAATGTGCTGCACATCAAC+TGG - chr1_3:65575053-65575072 None:intergenic 40.0%
TAAAGATACAGCCAAACGCT+CGG - chr1_3:65575167-65575186 None:intergenic 40.0%
! TTCAGAATCTTTTGCTCCTC+AGG - chr1_3:65575356-65575375 None:intergenic 40.0%
GATATGTTCTAACTGCAGGT+TGG + chr1_3:65575624-65575643 Msa0134110:intron 40.0%
!!! TGGTCTTATTTTGCGTGCAT+TGG + chr1_3:65575644-65575663 Msa0134110:CDS 40.0%
!!! GGTCTTATTTTGCGTGCATT+GGG + chr1_3:65575645-65575664 Msa0134110:CDS 40.0%
!! TGGGTTTTGACAATTCTACC+AGG + chr1_3:65575664-65575683 Msa0134110:CDS 40.0%
CTAGGGAACAAACTTCGAAA+TGG - chr1_3:65575738-65575757 None:intergenic 40.0%
GAACTGTGATTCTCAAGTCT+AGG - chr1_3:65575756-65575775 None:intergenic 40.0%
GGTTGTTTGCAAAGTTGCTT+GGG - chr1_3:65575887-65575906 None:intergenic 40.0%
AGGTTGTTTGCAAAGTTGCT+TGG - chr1_3:65575888-65575907 None:intergenic 40.0%
AACTTTGCAAACAACCTCCT+TGG + chr1_3:65575891-65575910 Msa0134110:CDS 40.0%
CATAATAAAGGCGATGACCA+AGG - chr1_3:65575911-65575930 None:intergenic 40.0%
CTTGGTCATCGCCTTTATTA+TGG + chr1_3:65575909-65575928 Msa0134110:CDS 40.0%
! TTGCCCCCATTTTCATTGAT+AGG + chr1_3:65575967-65575986 Msa0134110:CDS 40.0%
! TGCCCCCATTTTCATTGATA+GGG + chr1_3:65575968-65575987 Msa0134110:CDS 40.0%
CTCCCTATCAATGAAAATGG+GGG - chr1_3:65575973-65575992 None:intergenic 40.0%
!! GATGTTTGACAGAAGCATTC+AGG - chr1_3:65576107-65576126 None:intergenic 40.0%
AAACTCTACACAAGCTTGAG+TGG + chr1_3:65576211-65576230 Msa0134110:exon 40.0%
TCCACAGTAATGAACTTCTG+TGG + chr1_3:65576278-65576297 Msa0134110:three_prime_UTR 40.0%
CCACAGTAATGAACTTCTGT+GGG + chr1_3:65576279-65576298 Msa0134110:three_prime_UTR 40.0%
AAAGACCGAACTCCTATTAC+AGG + chr1_3:65576312-65576331 Msa0134110:three_prime_UTR 40.0%
TGGATCCTGTAATAGGAGTT+CGG - chr1_3:65576320-65576339 None:intergenic 40.0%
TCGTCTACACGACTAAATCA+GGG - chr1_3:65576442-65576461 None:intergenic 40.0%
ATCGTCTACACGACTAAATC+AGG - chr1_3:65576443-65576462 None:intergenic 40.0%
TTAGTCGTGTAGACGATAGA+AGG + chr1_3:65576446-65576465 Msa0134110:three_prime_UTR 40.0%
! GGAAGATCATACGGATTGAT+TGG + chr1_3:65576467-65576486 Msa0134110:three_prime_UTR 40.0%
! AATGTCGATTGTTGCAGACC+TGG + chr1_3:65570230-65570249 Msa0134110:intron 45.0%
CGATGTGTCTTCCATTCTGA+CGG - chr1_3:65570262-65570281 None:intergenic 45.0%
CGTCAGAATGGAAGACACAT+CGG + chr1_3:65570260-65570279 Msa0134110:CDS 45.0%
ATCGGAGGATCAGGATTCAA+AGG + chr1_3:65570278-65570297 Msa0134110:CDS 45.0%
!! CTTTGGAGCAATGCTGATTC+CGG + chr1_3:65570509-65570528 Msa0134110:CDS 45.0%
!! TAGCCATTAGTCTTACTCGG+AGG - chr1_3:65570688-65570707 None:intergenic 45.0%
TACACTAGTGCTGCCTGAAT+TGG + chr1_3:65571427-65571446 Msa0134110:CDS 45.0%
ATACCTGTCATCATGCCAGA+AGG - chr1_3:65571462-65571481 None:intergenic 45.0%
! TTTCTAGCCACTACGCTACT+TGG - chr1_3:65571742-65571761 None:intergenic 45.0%
! AGGTGAAATAGTGGGGAATC+TGG + chr1_3:65571773-65571792 Msa0134110:intron 45.0%
! GGTGAAATAGTGGGGAATCT+GGG + chr1_3:65571774-65571793 Msa0134110:intron 45.0%
! GTGAAATAGTGGGGAATCTG+GGG + chr1_3:65571775-65571794 Msa0134110:intron 45.0%
TAGGGATATTACGGTATGCC+GGG - chr1_3:65571814-65571833 None:intergenic 45.0%
GTAGGGATATTACGGTATGC+CGG - chr1_3:65571815-65571834 None:intergenic 45.0%
GTGAGCTTAGCTCAATTGGT+AGG - chr1_3:65571833-65571852 None:intergenic 45.0%
ACCAATTGAGCTAAGCTCAC+GGG + chr1_3:65571833-65571852 Msa0134110:intron 45.0%
GAATCGCAAGAATATGCACG+TGG - chr1_3:65572065-65572084 None:intergenic 45.0%
TGCACCCAATGTCAAGTGAA+TGG - chr1_3:65572948-65572967 None:intergenic 45.0%
!!! GAGAAGAGGCACCTTTTCTA+TGG + chr1_3:65573291-65573310 Msa0134110:intron 45.0%
!! TTATAGGAGCATCTCTAGGG+GGG - chr1_3:65573644-65573663 None:intergenic 45.0%
!! CTTATAGGAGCATCTCTAGG+GGG - chr1_3:65573645-65573664 None:intergenic 45.0%
TCAGCTAACCGGTGTGAAAA+GGG - chr1_3:65573726-65573745 None:intergenic 45.0%
TTCAGCTAACCGGTGTGAAA+AGG - chr1_3:65573727-65573746 None:intergenic 45.0%
ATCCTGAGTACCAAAGGTTG+AGG + chr1_3:65573757-65573776 Msa0134110:CDS 45.0%
! GTTGATAAGCTACGTGCACA+AGG + chr1_3:65573843-65573862 Msa0134110:CDS 45.0%
CCGAAGATGTATGGACATGA+AGG - chr1_3:65573871-65573890 None:intergenic 45.0%
AGTGTGTGCACAACATGTCT+GGG - chr1_3:65574275-65574294 None:intergenic 45.0%
AAGTGTGTGCACAACATGTC+TGG - chr1_3:65574276-65574295 None:intergenic 45.0%
TTCAGAGCCAAATGTACCCT+TGG - chr1_3:65574342-65574361 None:intergenic 45.0%
! CTGTCTGTTTTCCTAGATCC+CGG + chr1_3:65574491-65574510 Msa0134110:intron 45.0%
ATATCAAACACAGCTGGAGC+CGG - chr1_3:65574513-65574532 None:intergenic 45.0%
ATGAAGAGGTTGTCGCAACT+TGG + chr1_3:65574593-65574612 Msa0134110:intron 45.0%
TGAAGAGGTTGTCGCAACTT+GGG + chr1_3:65574594-65574613 Msa0134110:intron 45.0%
CAGTACACTTGGTCCAATCT+AGG - chr1_3:65574712-65574731 None:intergenic 45.0%
AAAGATACAGCCAAACGCTC+GGG - chr1_3:65575166-65575185 None:intergenic 45.0%
ACCAGGATATATCTTGCAGC+TGG + chr1_3:65575681-65575700 Msa0134110:CDS 45.0%
TCCAGCTGCAAGATATATCC+TGG - chr1_3:65575685-65575704 None:intergenic 45.0%
CTTGCAGCTGGAGAATTGTT+TGG + chr1_3:65575693-65575712 Msa0134110:CDS 45.0%
CAGCTGGAGAATTGTTTGGT+GGG + chr1_3:65575697-65575716 Msa0134110:CDS 45.0%
! AGCTGGAGAATTGTTTGGTG+GGG + chr1_3:65575698-65575717 Msa0134110:CDS 45.0%
!! AAGAGCTTGCTGAGAACACT+AGG + chr1_3:65575790-65575809 Msa0134110:CDS 45.0%
!! AGAGCTTGCTGAGAACACTA+GGG + chr1_3:65575791-65575810 Msa0134110:CDS 45.0%
! AGGTTCTGCTGTCGATTACA+TGG + chr1_3:65575821-65575840 Msa0134110:CDS 45.0%
AAAGTTGCTTGGGCCATCAT+AGG - chr1_3:65575877-65575896 None:intergenic 45.0%
AATAAAGGCGATGACCAAGG+AGG - chr1_3:65575908-65575927 None:intergenic 45.0%
!! ACGAATCCCCGATTTTGATG+AGG + chr1_3:65575998-65576017 Msa0134110:CDS 45.0%
TAACGGCCTCATCAAAATCG+GGG - chr1_3:65576007-65576026 None:intergenic 45.0%
CTAACGGCCTCATCAAAATC+GGG - chr1_3:65576008-65576027 None:intergenic 45.0%
CCTAACGGCCTCATCAAAAT+CGG - chr1_3:65576009-65576028 None:intergenic 45.0%
TGGGTGGACAATTGTCTTCT+GGG - chr1_3:65576139-65576158 None:intergenic 45.0%
TTGGGTGGACAATTGTCTTC+TGG - chr1_3:65576140-65576159 None:intergenic 45.0%
CCCACAGAAGTTCATTACTG+TGG - chr1_3:65576282-65576301 None:intergenic 45.0%
CGTCTACACGACTAAATCAG+GGG - chr1_3:65576441-65576460 None:intergenic 45.0%
ATTGGGTAGAGAGCAATGTC+TGG + chr1_3:65576485-65576504 Msa0134110:three_prime_UTR 45.0%
GTGTACAATGTGCATCCGAA+AGG + chr1_3:65576517-65576536 Msa0134110:three_prime_UTR 45.0%
!!! TTATTACTTTTATATTTTTT+CGG + chr1_3:65571716-65571735 Msa0134110:intron 5.0%
ATCTGAGAAAGGGCGGTTGA+CGG - chr1_3:65570023-65570042 None:intergenic 50.0%
CGTGTCGGAGATCTGAGAAA+GGG - chr1_3:65570033-65570052 None:intergenic 50.0%
CCTTTCTCAGATCTCCGACA+CGG + chr1_3:65570031-65570050 Msa0134110:five_prime_UTR 50.0%
! GCCGGTGACGGTTAGATAAA+TGG - chr1_3:65570060-65570079 None:intergenic 50.0%
CAGTGAAGAATGAGGAGCAG+TGG - chr1_3:65570085-65570104 None:intergenic 50.0%
CAGAATGGAAGACACATCGG+AGG + chr1_3:65570263-65570282 Msa0134110:CDS 50.0%
!! TTAGTCTTACTCGGAGGAGC+TGG - chr1_3:65570682-65570701 None:intergenic 50.0%
GCTCCTCCGAGTAAGACTAA+TGG + chr1_3:65570682-65570701 Msa0134110:intron 50.0%
TTGCGTGTTCGATGTAACGG+TGG + chr1_3:65570709-65570728 Msa0134110:CDS 50.0%
CTAATGCTGTTCTTGCTGCG+CGG + chr1_3:65571393-65571412 Msa0134110:CDS 50.0%
ACTCCTTCTGGCATGATGAC+AGG + chr1_3:65571456-65571475 Msa0134110:CDS 50.0%
! TTTTCGGCCAAGTAGCGTAG+TGG + chr1_3:65571732-65571751 Msa0134110:intron 50.0%
AGGGATATTACGGTATGCCG+GGG - chr1_3:65571813-65571832 None:intergenic 50.0%
CCAATTGAGCTAAGCTCACG+GGG + chr1_3:65571834-65571853 Msa0134110:intron 50.0%
TGCACCCAAGGTCAATCGAA+TGG - chr1_3:65572501-65572520 None:intergenic 50.0%
CACCTCAACCTTTGGTACTC+AGG - chr1_3:65573762-65573781 None:intergenic 50.0%
TATCAAACACAGCTGGAGCC+GGG - chr1_3:65574512-65574531 None:intergenic 50.0%
AGTCAATGGGCATTTGCCGA+TGG - chr1_3:65575435-65575454 None:intergenic 50.0%
TTACCTCCTCGGGAGTCAAT+GGG - chr1_3:65575448-65575467 None:intergenic 50.0%
TTTACCTCCTCGGGAGTCAA+TGG - chr1_3:65575449-65575468 None:intergenic 50.0%
GCAGCTGGAGAATTGTTTGG+TGG + chr1_3:65575696-65575715 Msa0134110:CDS 50.0%
!! GAGCTTGCTGAGAACACTAG+GGG + chr1_3:65575792-65575811 Msa0134110:CDS 50.0%
!! AGCTTGCTGAGAACACTAGG+GGG + chr1_3:65575793-65575812 Msa0134110:CDS 50.0%
TTGCTTGGGCCATCATAGGT+TGG - chr1_3:65575873-65575892 None:intergenic 50.0%
! GGGGCAAGAGCTTTTCTATC+AGG - chr1_3:65575954-65575973 None:intergenic 50.0%
!! CCGATTTTGATGAGGCCGTT+AGG + chr1_3:65576006-65576025 Msa0134110:CDS 50.0%
TCGGGAGAAACACGCTTATG+AGG - chr1_3:65576062-65576081 None:intergenic 50.0%
GTCGGAGATCTGAGAAAGGG+CGG - chr1_3:65570030-65570049 None:intergenic 55.0%
CCGTGTCGGAGATCTGAGAA+AGG - chr1_3:65570034-65570053 None:intergenic 55.0%
GAATGAGGAGCAGTGGTTGC+CGG - chr1_3:65570078-65570097 None:intergenic 55.0%
CCATTCTGACGGTGAAGTCC+AGG - chr1_3:65570251-65570270 None:intergenic 55.0%
CCTGGACTTCACCGTCAGAA+TGG + chr1_3:65570248-65570267 Msa0134110:CDS 55.0%
GGAAGACACATCGGAGGATC+AGG + chr1_3:65570269-65570288 Msa0134110:CDS 55.0%
!! TGGAGCAATGCTGATTCCGG+TGG + chr1_3:65570512-65570531 Msa0134110:CDS 55.0%
!! GCAATGCTGATTCCGGTGGT+TGG + chr1_3:65570516-65570535 Msa0134110:CDS 55.0%
ATACGGGGCCAATGAGAACG+CGG - chr1_3:65570557-65570576 None:intergenic 55.0%
TATTACGGTATGCCGGGGCT+GGG - chr1_3:65571808-65571827 None:intergenic 55.0%
ATATTACGGTATGCCGGGGC+TGG - chr1_3:65571809-65571828 None:intergenic 55.0%
CCCCGTGAGCTTAGCTCAAT+TGG - chr1_3:65571837-65571856 None:intergenic 55.0%
AGAGGTTGTCGCAACTTGGG+AGG + chr1_3:65574597-65574616 Msa0134110:intron 55.0%
GAGGTTGTCGCAACTTGGGA+GGG + chr1_3:65574598-65574617 Msa0134110:intron 55.0%
AGGTTGTCGCAACTTGGGAG+GGG + chr1_3:65574599-65574618 Msa0134110:intron 55.0%
! GGAGGGGTTTGGAGCTAGTA+AGG + chr1_3:65574615-65574634 Msa0134110:intron 55.0%
CCAAACGCTCGGGACATAAC+AGG - chr1_3:65575156-65575175 None:intergenic 55.0%
CCTGTTATGTCCCGAGCGTT+TGG + chr1_3:65575153-65575172 Msa0134110:intron 55.0%
!! CAAATGCCCATTGACTCCCG+AGG + chr1_3:65575439-65575458 Msa0134110:CDS 55.0%
TGCTGAGAACACTAGGGGGT+TGG + chr1_3:65575797-65575816 Msa0134110:CDS 55.0%
TGAGAAAGGGCGGTTGACGG+TGG - chr1_3:65570020-65570039 None:intergenic 60.0%
TGAGAACGCGGCGACGATGA+CGG - chr1_3:65570545-65570564 None:intergenic 60.0%
CATCGTCGCCGCGTTCTCAT+TGG + chr1_3:65570546-65570565 Msa0134110:CDS 60.0%
ATTACGGTATGCCGGGGCTG+GGG - chr1_3:65571807-65571826 None:intergenic 60.0%
!! TAGGAGCATCTCTAGGGGGG+CGG - chr1_3:65573641-65573660 None:intergenic 60.0%
GTCGCAACTTGGGAGGGGTT+TGG + chr1_3:65574604-65574623 Msa0134110:intron 60.0%
!! ATGCCCATTGACTCCCGAGG+AGG + chr1_3:65575442-65575461 Msa0134110:CDS 60.0%
! GAGAACACTAGGGGGTTGGC+AGG + chr1_3:65575801-65575820 Msa0134110:CDS 60.0%
GACGGTGGAGGAGTGGTGGT+GGG - chr1_3:65570005-65570024 None:intergenic 65.0%
TGACGGTGGAGGAGTGGTGG+TGG - chr1_3:65570006-65570025 None:intergenic 65.0%
GGTTGACGGTGGAGGAGTGG+TGG - chr1_3:65570009-65570028 None:intergenic 65.0%
GAAAGGGCGGTTGACGGTGG+AGG - chr1_3:65570017-65570036 None:intergenic 65.0%
GGAGCAGTGGTTGCCGGTGA+CGG - chr1_3:65570072-65570091 None:intergenic 65.0%
! CGATGACGGTCGCCAACCAC+CGG - chr1_3:65570531-65570550 None:intergenic 65.0%
TGGGGTTCAAACCCCAGCCC+CGG + chr1_3:65571793-65571812 Msa0134110:intron 65.0%
CACAGCTGGAGCCGGGATCT+AGG - chr1_3:65574505-65574524 None:intergenic 65.0%
GGCGGTTGACGGTGGAGGAG+TGG - chr1_3:65570012-65570031 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 65569981 65576736 65569981 ID=Msa0134110;Name=Msa0134110
chr1_3 mRNA 65569981 65576736 65569981 ID=Msa0134110-mRNA-1;Parent=Msa0134110;Name=Msa0134110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=178|1|1|1|1|1|9|507|510
chr1_3 exon 65569981 65570166 65569981 ID=Msa0134110-mRNA-1:exon:22234;Parent=Msa0134110-mRNA-1
chr1_3 exon 65570247 65570406 65570247 ID=Msa0134110-mRNA-1:exon:22235;Parent=Msa0134110-mRNA-1
chr1_3 exon 65570494 65570572 65570494 ID=Msa0134110-mRNA-1:exon:22236;Parent=Msa0134110-mRNA-1
chr1_3 exon 65570683 65570753 65570683 ID=Msa0134110-mRNA-1:exon:22237;Parent=Msa0134110-mRNA-1
chr1_3 exon 65571389 65571477 65571389 ID=Msa0134110-mRNA-1:exon:22238;Parent=Msa0134110-mRNA-1
chr1_3 exon 65573421 65573544 65573421 ID=Msa0134110-mRNA-1:exon:22239;Parent=Msa0134110-mRNA-1
chr1_3 exon 65573636 65573919 65573636 ID=Msa0134110-mRNA-1:exon:22240;Parent=Msa0134110-mRNA-1
chr1_3 exon 65575334 65575463 65575334 ID=Msa0134110-mRNA-1:exon:22241;Parent=Msa0134110-mRNA-1
chr1_3 exon 65575642 65576736 65575642 ID=Msa0134110-mRNA-1:exon:22242;Parent=Msa0134110-mRNA-1
chr1_3 five_prime_UTR 65569981 65570158 65569981 ID=Msa0134110-mRNA-1:five_prime_utr;Parent=Msa0134110-mRNA-1
chr1_3 CDS 65570159 65570166 65570159 ID=Msa0134110-mRNA-1:cds;Parent=Msa0134110-mRNA-1
chr1_3 CDS 65570247 65570406 65570247 ID=Msa0134110-mRNA-1:cds;Parent=Msa0134110-mRNA-1
chr1_3 CDS 65570494 65570572 65570494 ID=Msa0134110-mRNA-1:cds;Parent=Msa0134110-mRNA-1
chr1_3 CDS 65570683 65570753 65570683 ID=Msa0134110-mRNA-1:cds;Parent=Msa0134110-mRNA-1
chr1_3 CDS 65571389 65571477 65571389 ID=Msa0134110-mRNA-1:cds;Parent=Msa0134110-mRNA-1
chr1_3 CDS 65573421 65573544 65573421 ID=Msa0134110-mRNA-1:cds;Parent=Msa0134110-mRNA-1
chr1_3 CDS 65573636 65573919 65573636 ID=Msa0134110-mRNA-1:cds;Parent=Msa0134110-mRNA-1
chr1_3 CDS 65575334 65575463 65575334 ID=Msa0134110-mRNA-1:cds;Parent=Msa0134110-mRNA-1
chr1_3 CDS 65575642 65576229 65575642 ID=Msa0134110-mRNA-1:cds;Parent=Msa0134110-mRNA-1
chr1_3 three_prime_UTR 65576230 65576736 65576230 ID=Msa0134110-mRNA-1:three_prime_utr;Parent=Msa0134110-mRNA-1
Gene Sequence

>Msa0134110

ATGAGAAGACCTGGACTTCACCGTCAGAATGGAAGACACATCGGAGGATCAGGATTCAAAGGAATGATTGCGAAGTTATCAATTGCTGCTATCGTACTCTTGATCTGCACGTTCTCATTGTTCTACTCTTCATCAAATGAGAATGTTCAATCCATTTTTCGATCAGAGATCCGTTTAGAAGAGCTTTGGAGCAATGCTGATTCCGGTGGTTGGCGACCGTCATCGTCGCCGCGTTCTCATTGGCCCCCTCCTCCGAGTAAGACTAATGGCTATTTGCGTGTTCGATGTAACGGTGGACTGAATCAGCAGCGTACTGCAATCTCTAATGCTGTTCTTGCTGCGCGGATCATGAATGCTACACTAGTGCTGCCTGAATTGGATGCAAACTCCTTCTGGCATGATGACAGTGGTTTCCATGGTATCTATGATGTTGAGCACTTCATTAGAACACTGAGGTTTGACGTAAAAATTGTAGAAAGCATTCCAGAAAATGAGAAAAATGGCAAAAAGAAGAAATTAAAGGCATTTCAGATCCGCCCCCCTAGAGATGCTCCTATAAGTTGGTATACTACTGATGCTCTCAAGAAAATGAAGGAACATGGTGCCATTTATCTTACTCCCTTTTCACACCGGTTAGCTGAAGAAATTGACAATCCTGAGTACCAAAGGTTGAGGTGTAGAGTTAACTATCATGCTTTAAGATTCAAGCCACATATTATGAAGCTAAGTCAATCAATAGTTGATAAGCTACGTGCACAAGGACCCTTCATGTCCATACATCTTCGGTTTGAGATGGATATGTTGTCATTTGCTGGATGCTTTGATATATTTACACCTGAGGAGCAAAAGATTCTGAAGAAATATCGAGAAGAAAATTTTGCACCTAAAAAACTAGTCTATAATGAAAGAAGAGCCATCGGCAAATGCCCATTGACTCCCGAGGAGGTTGGTCTTATTTTGCGTGCATTGGGTTTTGACAATTCTACCAGGATATATCTTGCAGCTGGAGAATTGTTTGGTGGGGATCGATTTATGAATCCATTTCGAAGTTTGTTCCCTAGACTTGAGAATCACAGTTCTGTAGATCACTCTGAAGAGCTTGCTGAGAACACTAGGGGGTTGGCAGGTTCTGCTGTCGATTACATGGTCTGCCTTCTTTCTGACATTTTCATGCCAACCTATGATGGCCCAAGCAACTTTGCAAACAACCTCCTTGGTCATCGCCTTTATTATGGTTTTCGGACTACAATCAGACCTGATAGAAAAGCTCTTGCCCCCATTTTCATTGATAGGGAGAATGGACGAATCCCCGATTTTGATGAGGCCGTTAGGAAAGTAATGCTTAAAACAAACTTTGGTGAACCTCATAAGCGTGTTTCTCCCGAGTCTTTCTATACAAATTCTTGGCCTGAATGCTTCTGTCAAACATCAGCAAAGAACCCAGAAGACAATTGTCCACCCAATGATGTTTTAAATATTCTGCATGATGAATTGGTAAAAGCATCTACAGACACAAACTCTACACAAGCTTGA
Protein sequence

>Msa0134110

MRRPGLHRQNGRHIGGSGFKGMIAKLSIAAIVLLICTFSLFYSSSNENVQSIFRSEIRLEELWSNADSGGWRPSSSPRSHWPPPPSKTNGYLRVRCNGGLNQQRTAISNAVLAARIMNATLVLPELDANSFWHDDSGFHGIYDVEHFIRTLRFDVKIVESIPENEKNGKKKKLKAFQIRPPRDAPISWYTTDALKKMKEHGAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSQSIVDKLRAQGPFMSIHLRFEMDMLSFAGCFDIFTPEEQKILKKYREENFAPKKLVYNERRAIGKCPLTPEEVGLILRALGFDNSTRIYLAAGELFGGDRFMNPFRSLFPRLENHSSVDHSEELAENTRGLAGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIDRENGRIPDFDEAVRKVMLKTNFGEPHKRVSPESFYTNSWPECFCQTSAKNPEDNCPPNDVLNILHDELVKASTDTNSTQA*