AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039770 MtrunA17_Chr1g0204121 98.431 510 8 0 1 510 1 510 0.0 1051
Msa0039770 MtrunA17_Chr1g0204141 91.634 514 38 2 1 510 1 513 0.0 980
Msa0039770 MtrunA17_Chr4g0042711 39.355 465 256 12 29 477 38 492 6.00e-98 305
Msa0039770 MtrunA17_Chr5g0417871 37.161 479 264 12 29 485 19 482 4.61e-91 286
Msa0039770 MtrunA17_Chr5g0426591 36.281 441 244 9 61 476 85 513 4.01e-89 283
Msa0039770 MtrunA17_Chr3g0143821 39.302 430 246 10 61 484 82 502 4.06e-89 284
Msa0039770 MtrunA17_Chr3g0129981 39.140 442 233 10 61 479 88 516 1.51e-88 281
Msa0039770 MtrunA17_Chr4g0070551 39.310 435 229 11 61 476 201 619 1.91e-88 283
Msa0039770 MtrunA17_Chr4g0056061 41.176 391 219 6 88 475 108 490 1.08e-86 276
Msa0039770 MtrunA17_Chr2g0307971 38.835 412 237 7 73 473 100 507 1.20e-85 273
Msa0039770 MtrunA17_Chr5g0412251 36.123 454 246 11 58 475 57 502 4.44e-85 271
Msa0039770 MtrunA17_Chr4g0061781 40.191 418 210 12 82 473 105 508 6.67e-85 271
Msa0039770 MtrunA17_Chr6g0455571 40.587 409 226 8 72 467 98 502 7.24e-85 271
Msa0039770 MtrunA17_Chr5g0399311 42.276 369 206 5 88 455 124 486 1.10e-84 271
Msa0039770 MtrunA17_Chr5g0436321 40.494 405 210 11 88 475 161 551 1.90e-84 271
Msa0039770 MtrunA17_Chr3g0132371 36.735 441 245 9 60 478 114 542 3.40e-84 270
Msa0039770 MtrunA17_Chr5g0448581 37.705 427 244 10 61 478 90 503 3.54e-84 271
Msa0039770 MtrunA17_Chr4g0008451 37.327 434 241 10 61 477 205 624 6.14e-84 272
Msa0039770 MtrunA17_Chr3g0132951 36.052 466 253 13 49 476 59 517 1.60e-83 268
Msa0039770 MtrunA17_Chr3g0123521 35.321 436 256 10 62 476 119 549 2.81e-82 265
Msa0039770 MtrunA17_Chr1g0160781 37.358 439 244 12 59 477 122 549 8.15e-81 261
Msa0039770 MtrunA17_Chr4g0043911 35.217 460 261 13 41 477 105 550 1.51e-78 256
Msa0039770 MtrunA17_Chr3g0077321 35.320 453 250 15 59 484 119 555 1.89e-78 256
Msa0039770 MtrunA17_Chr5g0424241 37.136 412 223 11 89 474 158 559 1.47e-72 241
Msa0039770 MtrunA17_Chr3g0087291 31.308 428 273 9 61 477 142 559 2.48e-67 226
Msa0039770 MtrunA17_Chr4g0010511 32.634 429 266 9 61 477 202 619 1.66e-65 223
Msa0039770 MtrunA17_Chr2g0284071 31.692 467 257 15 61 475 185 641 2.49e-63 218
Msa0039770 MtrunA17_Chr4g0075311 33.619 467 251 13 60 476 136 593 1.50e-62 214
Msa0039770 MtrunA17_Chr7g0220381 32.615 325 193 8 58 367 77 390 6.15e-49 179
Msa0039770 MtrunA17_Chr1g0146501 32.239 335 207 7 52 369 53 384 8.85e-46 170
Msa0039770 MtrunA17_Chr4g0003561 28.538 424 263 14 61 475 47 439 2.46e-44 162
Msa0039770 MtrunA17_Chr3g0127811 32.550 298 177 7 84 369 59 344 8.75e-41 153
Msa0039770 MtrunA17_Chr7g0240241 43.750 112 57 1 250 355 2 113 1.57e-24 99.0
Msa0039770 MtrunA17_Chr4g0002361 21.958 378 242 14 57 419 50 389 5.54e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039770 AT1G04910.1 77.626 514 108 3 1 508 1 513 0.0 816
Msa0039770 AT1G14020.1 39.750 400 223 8 88 475 91 484 1.05e-88 281
Msa0039770 AT5G35570.1 39.955 443 229 14 55 477 218 643 1.62e-87 282
Msa0039770 AT5G64600.1 37.838 444 230 12 61 476 91 516 5.92e-87 277
Msa0039770 AT4G24530.1 36.784 454 241 11 61 477 75 519 6.14e-86 275
Msa0039770 AT2G37980.1 37.808 447 245 11 49 477 187 618 6.76e-86 278
Msa0039770 AT2G03280.1 40.100 399 220 9 88 473 88 480 7.26e-86 273
Msa0039770 AT5G15740.1 40.000 405 223 9 84 473 99 498 8.77e-86 274
Msa0039770 AT4G38390.1 39.747 395 228 7 86 477 121 508 2.42e-85 274
Msa0039770 AT5G65470.1 35.575 461 251 12 54 476 52 504 4.32e-84 269
Msa0039770 AT5G01100.1 38.901 455 239 13 45 477 174 611 7.55e-84 272
Msa0039770 AT3G54100.1 36.986 438 241 11 59 477 193 614 2.22e-83 271
Msa0039770 AT1G22460.1 36.674 439 244 11 59 475 132 558 9.02e-83 268
Msa0039770 AT3G02250.1 36.062 452 257 11 49 473 52 498 2.54e-81 262
Msa0039770 AT1G20550.1 38.903 401 226 12 86 479 107 495 3.85e-81 263
Msa0039770 AT3G26370.1 35.862 435 253 10 63 476 128 557 4.10e-81 263
Msa0039770 AT2G03280.2 37.619 420 217 9 88 467 88 502 9.21e-80 258
Msa0039770 AT4G16650.2 40.816 392 219 9 88 475 122 504 1.82e-79 258
Msa0039770 AT4G16650.1 40.816 392 219 9 88 475 122 504 1.82e-79 258
Msa0039770 AT2G01480.1 36.344 454 249 15 59 487 127 565 3.90e-78 255
Msa0039770 AT1G76270.1 37.905 401 230 12 86 479 104 492 1.30e-77 254
Msa0039770 AT2G01480.2 38.832 394 203 13 59 428 127 506 2.02e-77 253
Msa0039770 AT1G35510.1 33.135 504 284 14 26 484 71 566 8.41e-77 252
Msa0039770 AT1G14970.2 35.455 440 251 14 57 475 6 433 4.90e-75 244
Msa0039770 AT1G38065.1 37.046 413 224 11 88 474 36 438 1.44e-74 243
Msa0039770 AT1G38065.2 37.046 413 224 11 88 474 26 428 1.63e-74 243
Msa0039770 AT1G14970.3 37.010 408 228 12 88 475 9 407 1.96e-74 241
Msa0039770 AT1G14970.1 35.385 455 257 14 48 475 109 553 9.80e-74 244
Msa0039770 AT1G38131.1 37.046 413 224 11 88 474 155 557 2.32e-73 243
Msa0039770 AT5G63390.1 33.411 431 259 11 60 475 132 549 1.84e-69 232
Msa0039770 AT2G44500.1 32.864 426 264 9 61 474 146 561 9.50e-69 231
Msa0039770 AT3G07900.1 31.776 428 272 9 61 477 157 575 5.55e-64 218
Msa0039770 AT1G11990.1 30.909 440 282 8 54 476 156 590 5.09e-63 216
Msa0039770 AT1G62330.1 31.466 464 262 11 60 474 193 649 7.60e-63 217
Msa0039770 AT1G29200.4 33.949 433 233 11 88 475 70 494 2.21e-59 204
Msa0039770 AT1G29200.1 33.949 433 233 11 88 475 70 494 2.21e-59 204
Msa0039770 AT1G29200.2 31.066 544 280 16 19 475 75 610 5.86e-59 206
Msa0039770 AT1G11990.2 28.333 480 285 8 51 476 138 612 1.29e-57 202
Msa0039770 AT1G29200.3 33.724 427 230 11 94 475 2 420 4.70e-57 196
Msa0039770 AT3G03810.2 33.421 380 209 10 28 369 10 383 1.09e-55 197
Msa0039770 AT3G03810.1 33.421 380 209 10 28 369 10 383 1.09e-55 197
Msa0039770 AT1G52630.1 30.140 428 261 13 55 475 40 436 7.94e-51 180
Msa0039770 AT3G30300.2 33.013 312 192 7 73 369 85 394 6.11e-48 176
Msa0039770 AT3G30300.1 33.013 312 192 7 73 369 85 394 6.11e-48 176
Msa0039770 AT3G26370.2 38.843 242 137 4 63 293 128 369 1.61e-46 167
Msa0039770 AT2G44500.2 34.470 264 160 4 61 316 146 404 5.92e-43 158
Msa0039770 AT1G52630.2 28.307 378 234 12 104 475 2 348 3.45e-36 138
Msa0039770 AT3G21190.1 24.339 378 216 15 81 439 79 405 2.33e-18 87.8
Msa0039770 AT1G51630.1 25.072 347 201 12 88 419 91 393 5.27e-18 86.7

Find 162 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATATATGTTAGATATT+TGG 0.154327 1_1:+69727969 Msa0039770:three_prime_UTR
TTGGGTGGACAATTGTCTTC+TGG 0.181926 1_1:-69727531 None:intergenic
GAAGAAATTAAAGGCATTTC+AGG 0.211451 1_1:+69724945 Msa0039770:CDS
ATTCTCCCTATCAATGAAAA+TGG 0.236334 1_1:-69727367 None:intergenic
CTTGGTCATCGCCTTTATTA+TGG 0.252041 1_1:+69727303 Msa0039770:CDS
CTAGTGACAGATGAAATTTC+TGG 0.266164 1_1:+69727949 Msa0039770:three_prime_UTR
AGTCTTTCTATACAAATTCT+TGG 0.285777 1_1:+69727475 Msa0039770:CDS
TAATAATGTAATATGTTATT+CGG 0.292591 1_1:+69728041 Msa0039770:three_prime_UTR
TGGGTGGACAATTGTCTTCT+GGG 0.294103 1_1:-69727530 None:intergenic
AAATATTCTGCATGATGAAT+TGG 0.310357 1_1:+69727563 Msa0039770:CDS
AAGGAGTTTGCATCCAATTC+AGG 0.312722 1_1:-69722862 None:intergenic
AATTGGATGCAAACTCCTTC+TGG 0.314006 1_1:+69722866 Msa0039770:CDS
CAGAATATTTAAAACATCAT+TGG 0.318046 1_1:-69727550 None:intergenic
GAAAATCTGGATCCTGTAAT+AGG 0.324475 1_1:-69727718 None:intergenic
TCAGTAGTATACCAACTTAT+AGG 0.339678 1_1:-69725079 None:intergenic
ATCGTCTACACAACTAAATC+AGG 0.340615 1_1:-69727834 None:intergenic
GATGTTTGACAGAAGCATTC+AGG 0.344083 1_1:-69727498 None:intergenic
ACAAGCTTGAGTGGATATAT+AGG 0.349401 1_1:+69727614 Msa0039770:exon
CAAGCTTGAGTGGATATATA+GGG 0.351376 1_1:+69727615 Msa0039770:exon
CTTTGGAGCAATGCTGATTC+CGG 0.352641 1_1:+69721970 Msa0039770:CDS
ACAAATATGACCAGAAAATC+TGG 0.358799 1_1:-69727731 None:intergenic
TTAGTTGTGTAGACGATAGA+AGG 0.361775 1_1:+69727840 Msa0039770:three_prime_UTR
CCTAACGGCCTCATCAAAAT+CGG 0.368288 1_1:-69727400 None:intergenic
AAAGACCGAACTCCTATTAC+AGG 0.371904 1_1:+69727706 Msa0039770:three_prime_UTR
GGAAGATCATACGGATTGAT+TGG 0.375327 1_1:+69727861 Msa0039770:three_prime_UTR
ATGGATATGTTGTCATTTGC+TGG 0.382372 1_1:+69725319 Msa0039770:CDS
TGAAAAGGGAGTAAGATAAA+TGG 0.392886 1_1:-69725131 None:intergenic
TAGTCCGAAAACCATAATAA+AGG 0.394892 1_1:-69727314 None:intergenic
TACACTAGTGCTGCCTGAAT+TGG 0.395186 1_1:+69722849 Msa0039770:CDS
TTCTCCCTATCAATGAAAAT+GGG 0.403139 1_1:-69727366 None:intergenic
TAACTCTACACCTCAACCTT+TGG 0.403900 1_1:-69725189 None:intergenic
GGAAGACACATCGGAGGATC+AGG 0.408537 1_1:+69721727 Msa0039770:CDS
TTTACCTCCTCGGGAGTCAA+TGG 0.416227 1_1:-69726871 None:intergenic
CCTTCATGTCCATACATCTT+CGG 0.416287 1_1:+69725290 Msa0039770:CDS
GGTTGTTTGCAAAGTTGCTT+GGG 0.417543 1_1:-69727278 None:intergenic
TTCAGCTAACCGGTGTGAAA+AGG 0.419566 1_1:-69725146 None:intergenic
TGTCAATTTCTTCAGCTAAC+CGG 0.425709 1_1:-69725156 None:intergenic
AAAGTTGCTTGGGCCATCAT+AGG 0.426197 1_1:-69727268 None:intergenic
TGACGGTGGAGGAGTGGTGG+TGG 0.427378 1_1:-69721461 None:intergenic
CTTGCAGCTGGAGAATTGTT+TGG 0.428527 1_1:+69727087 Msa0039770:CDS
AGAATATTTAAAACATCATT+GGG 0.428907 1_1:-69727549 None:intergenic
CATCGTCGCCGCGTTCTCAT+TGG 0.429992 1_1:+69722007 Msa0039770:CDS
CTAGGGAACAAACTTCGAAA+TGG 0.433828 1_1:-69727129 None:intergenic
CATCTCAAACCGAAGATGTA+TGG 0.438346 1_1:-69725299 None:intergenic
GGTTGACGGTGGAGGAGTGG+TGG 0.446235 1_1:-69721464 None:intergenic
GCCGGTGACGGTTAGAGAAA+TGG 0.446654 1_1:-69721515 None:intergenic
TGCTCCAAAGCTCTTCTAAA+CGG 0.447361 1_1:-69721957 None:intergenic
TGACTTAGCTTCATAATATG+TGG 0.449252 1_1:-69725235 None:intergenic
AGATCCGTTTAGAAGAGCTT+TGG 0.450751 1_1:+69721953 Msa0039770:intron
CACCTCAACCTTTGGTACTC+AGG 0.452836 1_1:-69725181 None:intergenic
AACTTATAGGAGCATCTCTA+GGG 0.453270 1_1:-69725066 None:intergenic
GTAACTATATAAGTGCCTTT+CGG 0.453428 1_1:-69727926 None:intergenic
CAACTTATAGGAGCATCTCT+AGG 0.455037 1_1:-69725067 None:intergenic
AGGTTGTTTGCAAAGTTGCT+TGG 0.455901 1_1:-69727279 None:intergenic
ATAGTACTACTCTTATTATG+TGG 0.459137 1_1:-69721582 None:intergenic
CTAACGGCCTCATCAAAATC+GGG 0.459265 1_1:-69727399 None:intergenic
CAAATAATAACAAGAGTTCA+AGG 0.463848 1_1:+69727793 Msa0039770:three_prime_UTR
GACGGTGGAGGAGTGGTGGT+GGG 0.471017 1_1:-69721460 None:intergenic
AAGAGCTTGCTGAGAACACT+AGG 0.471435 1_1:+69727184 Msa0039770:CDS
GAATGAGGAGCAGTGGTTGC+CGG 0.473808 1_1:-69721533 None:intergenic
GTAATGCTTAAAACAAACTT+TGG 0.474936 1_1:+69727426 Msa0039770:CDS
AACTTTGCAAACAACCTCCT+TGG 0.484378 1_1:+69727285 Msa0039770:CDS
AGGTTCTGCTGTCGATTACA+TGG 0.485297 1_1:+69727215 Msa0039770:CDS
ATTCAAATAAGATGCTACTT+AGG 0.485356 1_1:+69728103 Msa0039770:three_prime_UTR
TTACCTCCTCGGGAGTCAAT+GGG 0.488237 1_1:-69726870 None:intergenic
TCAGCTAACCGGTGTGAAAA+GGG 0.491222 1_1:-69725145 None:intergenic
CACATTATTAGTTCTACTGA+TGG 0.493926 1_1:+69727759 Msa0039770:three_prime_UTR
TTTACATGCAGTGGTTTCCA+TGG 0.495392 1_1:+69724832 Msa0039770:intron
GGATATATAGGGGTTATTTG+TGG 0.495758 1_1:+69727626 Msa0039770:three_prime_UTR
TGGATCCTGTAATAGGAGTT+CGG 0.497705 1_1:-69727711 None:intergenic
CCATTCTGACGGTGAAGTCC+AGG 0.499200 1_1:-69721706 None:intergenic
CAGCTGGAGAATTGTTTGGT+GGG 0.499288 1_1:+69727091 Msa0039770:CDS
GTCTAAAATTTACCTTCTCA+TGG 0.499633 1_1:-69721615 None:intergenic
ATTGGGTAGAGAGCAATGTC+TGG 0.500737 1_1:+69727879 Msa0039770:three_prime_UTR
GAAAGGGCGGTTGACGGTGG+AGG 0.506219 1_1:-69721472 None:intergenic
ATCTGAGAAAGGGCGGTTGA+CGG 0.506420 1_1:-69721478 None:intergenic
ACCAGGATATATCTTGCAGC+TGG 0.508790 1_1:+69727075 Msa0039770:CDS
TCCATTTCTCTAACCGTCAC+CGG 0.512492 1_1:+69721514 Msa0039770:five_prime_UTR
GGCGGTTGACGGTGGAGGAG+TGG 0.513045 1_1:-69721467 None:intergenic
GCTCCTCCGAGTAAGACTAA+TGG 0.513619 1_1:+69722143 Msa0039770:intron
CGATGACGGTCGCCAACCAC+CGG 0.513924 1_1:-69721989 None:intergenic
TCGGGAGAAACACGCTTATG+AGG 0.515335 1_1:-69727453 None:intergenic
ACTCCTTCTGGCATGATGAC+AGG 0.515369 1_1:+69722878 Msa0039770:CDS
CATTAACATCAGTTTCAAGT+AGG 0.516115 1_1:-69728071 None:intergenic
GAAGATCATACGGATTGATT+GGG 0.516279 1_1:+69727862 Msa0039770:three_prime_UTR
CATACATCTTCGGTTTGAGA+TGG 0.516387 1_1:+69725300 Msa0039770:CDS
TCCAGCTGCAAGATATATCC+TGG 0.517649 1_1:-69727076 None:intergenic
CTAGAGATGCTCCTATAAGT+TGG 0.519061 1_1:+69725068 Msa0039770:CDS
CCTGGACTTCACCGTCAGAA+TGG 0.520574 1_1:+69721706 Msa0039770:CDS
GAACTGTGATTCTCAAGTCT+AGG 0.531519 1_1:-69727147 None:intergenic
TGATGCTCTCAAGAAAATGA+AGG 0.532179 1_1:+69725099 Msa0039770:CDS
AGCTGGAGAATTGTTTGGTG+GGG 0.534335 1_1:+69727092 Msa0039770:CDS
CAGAAATTTCATCTGTCACT+AGG 0.534686 1_1:-69727948 None:intergenic
CCGAAGATGTATGGACATGA+AGG 0.541002 1_1:-69725290 None:intergenic
CGATGTGTCTTCCATTCTGA+CGG 0.542650 1_1:-69721717 None:intergenic
AACTGTGATTCTCAAGTCTA+GGG 0.546837 1_1:-69727146 None:intergenic
GCAGCTGGAGAATTGTTTGG+TGG 0.547573 1_1:+69727090 Msa0039770:CDS
TTTAAGCATTACTTTCCTAA+CGG 0.550039 1_1:-69727415 None:intergenic
ACGATAGAAGGAAGATCATA+CGG 0.550774 1_1:+69727852 Msa0039770:three_prime_UTR
TCCACAGTAATGAACTTCTG+TGG 0.553047 1_1:+69727672 Msa0039770:three_prime_UTR
TGAGTTTACAGTGAAGAATG+AGG 0.554837 1_1:-69721548 None:intergenic
GGAGCAGTGGTTGCCGGTGA+CGG 0.559327 1_1:-69721527 None:intergenic
ATCGGAGGATCAGGATTCAA+AGG 0.560767 1_1:+69721736 Msa0039770:CDS
GCATGAAAATGTCAGAAAGA+AGG 0.561934 1_1:-69727242 None:intergenic
AAACTCTACACAAGCTTGAG+TGG 0.562467 1_1:+69727605 Msa0039770:exon
TTGCTTGGGCCATCATAGGT+TGG 0.563703 1_1:-69727264 None:intergenic
CATCAGTAGAACTAATAATG+TGG 0.565699 1_1:-69727758 None:intergenic
CCGTGTCGGAGATCTGAGAA+AGG 0.567165 1_1:-69721489 None:intergenic
GCAATGCTGATTCCGGTGGT+TGG 0.569539 1_1:+69721977 Msa0039770:CDS
ATCCTGAGTACCAAAGGTTG+AGG 0.570587 1_1:+69725179 Msa0039770:CDS
AGTCAATGGGCATTTGCCGA+TGG 0.571393 1_1:-69726857 None:intergenic
TCGTCTACACAACTAAATCA+GGG 0.577194 1_1:-69727833 None:intergenic
CTTTGATATATTTACACCTG+AGG 0.580997 1_1:+69726762 Msa0039770:CDS
AGAGCTTGCTGAGAACACTA+GGG 0.583230 1_1:+69727185 Msa0039770:CDS
ATCAGTAGAACTAATAATGT+GGG 0.583978 1_1:-69727757 None:intergenic
CATAATAAAGGCGATGACCA+AGG 0.584303 1_1:-69727302 None:intergenic
CAGTGAAGAATGAGGAGCAG+TGG 0.586719 1_1:-69721540 None:intergenic
TGGATATGTTGTCATTTGCT+GGG 0.589516 1_1:+69725320 Msa0039770:CDS
TATTTGCGTGTTCGATGTAA+CGG 0.590850 1_1:+69722167 Msa0039770:CDS
CCACAGTAATGAACTTCTGT+GGG 0.594147 1_1:+69727673 Msa0039770:three_prime_UTR
TTGACAATCCTGAGTACCAA+AGG 0.598187 1_1:+69725173 Msa0039770:CDS
TGAGAACGCGGCGACGATGA+CGG 0.602998 1_1:-69722003 None:intergenic
CTCAAGAAAATGAAGGAACA+TGG 0.606285 1_1:+69725106 Msa0039770:CDS
GCTCAACATCATAGATACCA+TGG 0.609063 1_1:-69724849 None:intergenic
CGTGTCGGAGATCTGAGAAA+GGG 0.609339 1_1:-69721488 None:intergenic
TATAATGAAAGAAGAGCCAT+CGG 0.611176 1_1:+69726841 Msa0039770:CDS
TAAAATTTACCTTCTCATGG+TGG 0.612441 1_1:-69721612 None:intergenic
TCTCCCTATCAATGAAAATG+GGG 0.612552 1_1:-69727365 None:intergenic
TGAGAAAGGGCGGTTGACGG+TGG 0.614214 1_1:-69721475 None:intergenic
TAGAGAAATGGACACCGTGT+CGG 0.617302 1_1:-69721503 None:intergenic
ATTAAGTCTCCACCATGAGA+AGG 0.622750 1_1:+69721603 Msa0039770:exon
AAATAACCATTAGTCTTACT+CGG 0.624920 1_1:-69722149 None:intergenic
CCCACAGAAGTTCATTACTG+TGG 0.629627 1_1:-69727673 None:intergenic
ATACCTGTCATCATGCCAGA+AGG 0.634087 1_1:-69722881 None:intergenic
AGAATTTGTATAGAAAGACT+CGG 0.634296 1_1:-69727472 None:intergenic
ATATTTAAAACATCATTGGG+TGG 0.634628 1_1:-69727546 None:intergenic
TTATAGGAGCATCTCTAGGG+GGG 0.634968 1_1:-69725063 None:intergenic
GTGTACAATGTGCATCCGAA+AGG 0.637901 1_1:+69727911 Msa0039770:three_prime_UTR
GAATTTGTATAGAAAGACTC+GGG 0.640294 1_1:-69727471 None:intergenic
TTGCGTGTTCGATGTAACGG+TGG 0.641593 1_1:+69722170 Msa0039770:CDS
CTCCCTATCAATGAAAATGG+GGG 0.642427 1_1:-69727364 None:intergenic
ACTTATAGGAGCATCTCTAG+GGG 0.644818 1_1:-69725065 None:intergenic
GTTGATAAGCTACGTGCACA+AGG 0.647748 1_1:+69725265 Msa0039770:CDS
AAGCTTGAGTGGATATATAG+GGG 0.649342 1_1:+69727616 Msa0039770:exon
TGGAGCAATGCTGATTCCGG+TGG 0.651971 1_1:+69721973 Msa0039770:CDS
CGAAGATGTATGGACATGAA+GGG 0.654639 1_1:-69725289 None:intergenic
CGTCTACACAACTAAATCAG+GGG 0.655354 1_1:-69727832 None:intergenic
GTCGGAGATCTGAGAAAGGG+CGG 0.659795 1_1:-69721485 None:intergenic
CTTATAGGAGCATCTCTAGG+GGG 0.668584 1_1:-69725064 None:intergenic
CCTTTCTCAGATCTCCGACA+CGG 0.671903 1_1:+69721489 Msa0039770:five_prime_UTR
TAACGGCCTCATCAAAATCG+GGG 0.672059 1_1:-69727398 None:intergenic
CTAATGCTGTTCTTGCTGCG+CGG 0.678273 1_1:+69722815 Msa0039770:CDS
CGTCAGAATGGAAGACACAT+CGG 0.681405 1_1:+69721718 Msa0039770:CDS
ATGCCCATTGACTCCCGAGG+AGG 0.681727 1_1:+69726867 Msa0039770:CDS
GAGCTTGCTGAGAACACTAG+GGG 0.690781 1_1:+69727186 Msa0039770:CDS
CAAATGCCCATTGACTCCCG+AGG 0.706848 1_1:+69726864 Msa0039770:CDS
ATACGGGGCCAATGAGAACG+CGG 0.715796 1_1:-69722015 None:intergenic
CAGAATGGAAGACACATCGG+AGG 0.720435 1_1:+69721721 Msa0039770:CDS
AGCACTTCATTAGAACACTG+AGG 0.734261 1_1:+69724869 Msa0039770:CDS
TAACCATTAGTCTTACTCGG+AGG 0.736701 1_1:-69722146 None:intergenic
AGCTTGCTGAGAACACTAGG+GGG 0.740298 1_1:+69727187 Msa0039770:CDS
AATAAAGGCGATGACCAAGG+AGG 0.741984 1_1:-69727299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTGTTTATTGT+TGG + chr1_1:69721928-69721947 Msa0039770:intron 10.0%
!!! TTTTTTTTTTGTTTATTGTT+GGG + chr1_1:69721929-69721948 Msa0039770:intron 10.0%
!!! ATATTTAATTGTTTTTGTTT+TGG + chr1_1:69724656-69724675 Msa0039770:intron 10.0%
!! TAATAATGTAATATGTTATT+CGG + chr1_1:69728041-69728060 Msa0039770:three_prime_UTR 10.0%
!! AAAAATATTTCCAAAAAGAA+TGG - chr1_1:69722500-69722519 None:intergenic 15.0%
!! AAAAATAATATATACCGATA+TGG + chr1_1:69722674-69722693 Msa0039770:intron 15.0%
!! AAAATAATATATACCGATAT+GGG + chr1_1:69722675-69722694 Msa0039770:intron 15.0%
!!! TGTGTTTAACTTATAATAAA+AGG + chr1_1:69723676-69723695 Msa0039770:intron 15.0%
!!! TAAGTTTTAATCACATTTTT+TGG + chr1_1:69725960-69725979 Msa0039770:intron 15.0%
!!! AAGTTTTAATCACATTTTTT+GGG + chr1_1:69725961-69725980 Msa0039770:intron 15.0%
!!! TATTTTCTTAAATATGCATT+TGG + chr1_1:69726547-69726566 Msa0039770:intron 15.0%
!!! ATTTTCTTAAATATGCATTT+GGG + chr1_1:69726548-69726567 Msa0039770:intron 15.0%
!!! AGAATATTTAAAACATCATT+GGG - chr1_1:69727552-69727571 None:intergenic 15.0%
!!! AATTTTCTGATAATGTGTTA+TGG + chr1_1:69722105-69722124 Msa0039770:intron 20.0%
!!! TTTTACAGTAAGAATGAAAA+GGG - chr1_1:69722225-69722244 None:intergenic 20.0%
!!! ATTTTACAGTAAGAATGAAA+AGG - chr1_1:69722226-69722245 None:intergenic 20.0%
!!! ATGGAATTTTATGAGTATAT+AGG + chr1_1:69722249-69722268 Msa0039770:intron 20.0%
!!! TGGAATTTTATGAGTATATA+GGG + chr1_1:69722250-69722269 Msa0039770:intron 20.0%
!!! ATTTCTTTTTTCTTGAACAT+AGG + chr1_1:69723005-69723024 Msa0039770:intron 20.0%
!!! ATTGACTTATTATTGAAACA+TGG + chr1_1:69723610-69723629 Msa0039770:intron 20.0%
!! TTGACTTATTATTGAAACAT+GGG + chr1_1:69723611-69723630 Msa0039770:intron 20.0%
!!! TAAGTTAAACACATTTTTCT+AGG - chr1_1:69723669-69723688 None:intergenic 20.0%
!! TAACAACAAATATAACCATA+AGG - chr1_1:69723750-69723769 None:intergenic 20.0%
!!! TATATTTGTTGTTACTTCAT+TGG + chr1_1:69723756-69723775 Msa0039770:intron 20.0%
!!! ATATTTGTTGTTACTTCATT+GGG + chr1_1:69723757-69723776 Msa0039770:intron 20.0%
!!! ACTATCTTTTAACTTTATGT+GGG - chr1_1:69724251-69724270 None:intergenic 20.0%
!!! AACTATCTTTTAACTTTATG+TGG - chr1_1:69724252-69724271 None:intergenic 20.0%
!! TAAAGTTAAAAGATAGTTTC+TGG + chr1_1:69724254-69724273 Msa0039770:intron 20.0%
!! TAAATATAAGAAACTTAGTC+TGG - chr1_1:69724643-69724662 None:intergenic 20.0%
!! TTAGAATCTTATTCTGATTT+AGG + chr1_1:69724691-69724710 Msa0039770:intron 20.0%
!! TTGTTAAATTTGTGATGAAT+TGG + chr1_1:69724760-69724779 Msa0039770:intron 20.0%
!! TTCAGGTAGATTATAATATT+TGG + chr1_1:69724962-69724981 Msa0039770:intron 20.0%
!!! TTGAAATCATTTTAATTTCC+TGG + chr1_1:69724997-69725016 Msa0039770:intron 20.0%
!!! TAGTTTTTTATTTCTTACCA+AGG + chr1_1:69725745-69725764 Msa0039770:intron 20.0%
!!! AGTTTTTTATTTCTTACCAA+GGG + chr1_1:69725746-69725765 Msa0039770:intron 20.0%
!! AACATTCAAAAACAGTTTAA+GGG - chr1_1:69726421-69726440 None:intergenic 20.0%
!!! TATAGAATCTGTTTTATTGA+CGG + chr1_1:69726650-69726669 Msa0039770:intron 20.0%
!!! TCATTATAGACTAGTTTTTT+AGG - chr1_1:69726829-69726848 None:intergenic 20.0%
!! TATGATGCCAATAATTTAAT+TGG + chr1_1:69726986-69727005 Msa0039770:intron 20.0%
!! TCTACATCCAATTAAATTAT+TGG - chr1_1:69726996-69727015 None:intergenic 20.0%
!!! CAGAATATTTAAAACATCAT+TGG - chr1_1:69727553-69727572 None:intergenic 20.0%
! ATAGTACTACTCTTATTATG+TGG - chr1_1:69721585-69721604 None:intergenic 25.0%
!!! CAAGAGTTTTTAATTGAGTA+TGG + chr1_1:69722073-69722092 Msa0039770:intron 25.0%
!!! AAATAACCATTAGTCTTACT+CGG - chr1_1:69722152-69722171 None:intergenic 25.0%
! ATTCTTACTGTAAAATGTGA+TGG + chr1_1:69722230-69722249 Msa0039770:intron 25.0%
!!! CTCAATATTTAGAAGTATCT+AGG - chr1_1:69722340-69722359 None:intergenic 25.0%
! AAATACATGTATCAGTCTAT+CGG - chr1_1:69722386-69722405 None:intergenic 25.0%
! TATATCCAATACTACGATAT+TGG - chr1_1:69722457-69722476 None:intergenic 25.0%
!! AATTTGATGAACAAGTTTTG+CGG - chr1_1:69722947-69722966 None:intergenic 25.0%
! TTCTCAATTCTTGATTCAAA+TGG + chr1_1:69722965-69722984 Msa0039770:intron 25.0%
!! AAGCTGTTGTTATTACTATT+AGG + chr1_1:69723282-69723301 Msa0039770:intron 25.0%
! AGTCAATGTATTTAAATACG+TGG - chr1_1:69723597-69723616 None:intergenic 25.0%
! GAAGTTAAAAGATAGTTTCT+GGG + chr1_1:69723808-69723827 Msa0039770:intron 25.0%
! GCATAAATTTGTGTTTAGTT+TGG + chr1_1:69724101-69724120 Msa0039770:intron 25.0%
!!! TCATTTGTTGTTACTTCATA+GGG + chr1_1:69724204-69724223 Msa0039770:intron 25.0%
!!! CTATCTTTTAACTTTATGTG+GGG - chr1_1:69724250-69724269 None:intergenic 25.0%
!! TATCAGATGGATTTATAAGT+TGG + chr1_1:69724506-69724525 Msa0039770:intron 25.0%
!! ATCAGATGGATTTATAAGTT+GGG + chr1_1:69724507-69724526 Msa0039770:intron 25.0%
!! AACAGAAATTGTTCTACTTT+TGG + chr1_1:69724588-69724607 Msa0039770:intron 25.0%
! ATTCCAGAAAATGAGAAAAA+TGG + chr1_1:69724916-69724935 Msa0039770:CDS 25.0%
! TGGCAAAAAGAAGAAATTAA+AGG + chr1_1:69724936-69724955 Msa0039770:CDS 25.0%
!!! AAGTTTTGAACATAATATCC+AGG - chr1_1:69725018-69725037 None:intergenic 25.0%
!!! TTTCTTTTGATTCAAAGCTA+TGG + chr1_1:69725441-69725460 Msa0039770:intron 25.0%
!! CAATGTTTTCTGACAAAAAT+TGG - chr1_1:69725476-69725495 None:intergenic 25.0%
!!! TTGTTTCTAAACATCTCTAA+TGG + chr1_1:69725549-69725568 Msa0039770:intron 25.0%
! ACAGAAATAGAAAGAGTAAA+AGG - chr1_1:69725587-69725606 None:intergenic 25.0%
!! ATATTTCTAAACATCTCTCT+AGG + chr1_1:69725619-69725638 Msa0039770:intron 25.0%
! TTAATTATATCAAACACAGC+TGG - chr1_1:69725943-69725962 None:intergenic 25.0%
!!! ATTTTTTGGGCTTAACTTAA+AGG + chr1_1:69725974-69725993 Msa0039770:intron 25.0%
! CTTTAAACTCAACCATAAAA+TGG - chr1_1:69726093-69726112 None:intergenic 25.0%
! TTTGACCAAGAAATTGTATA+CGG + chr1_1:69726191-69726210 Msa0039770:intron 25.0%
!! GTTTTTCTCAAAGAATGATA+AGG + chr1_1:69726290-69726309 Msa0039770:intron 25.0%
! GAACATTCAAAAACAGTTTA+AGG - chr1_1:69726422-69726441 None:intergenic 25.0%
!! TTGAATGTTCTAGTTAACTT+TGG + chr1_1:69726432-69726451 Msa0039770:intron 25.0%
!! AAAACTAATTTTTACCTCCT+CGG - chr1_1:69726884-69726903 None:intergenic 25.0%
!!! CTTTTAATTGTTTCTTTGTC+TGG + chr1_1:69726915-69726934 Msa0039770:intron 25.0%
! TTTAAGCATTACTTTCCTAA+CGG - chr1_1:69727418-69727437 None:intergenic 25.0%
! GTAATGCTTAAAACAAACTT+TGG + chr1_1:69727426-69727445 Msa0039770:CDS 25.0%
! AGAATTTGTATAGAAAGACT+CGG - chr1_1:69727475-69727494 None:intergenic 25.0%
! AGTCTTTCTATACAAATTCT+TGG + chr1_1:69727475-69727494 Msa0039770:CDS 25.0%
!! ATATTTAAAACATCATTGGG+TGG - chr1_1:69727549-69727568 None:intergenic 25.0%
! AAATATTCTGCATGATGAAT+TGG + chr1_1:69727563-69727582 Msa0039770:CDS 25.0%
! ATCAGTAGAACTAATAATGT+GGG - chr1_1:69727760-69727779 None:intergenic 25.0%
! CAAATAATAACAAGAGTTCA+AGG + chr1_1:69727793-69727812 Msa0039770:three_prime_UTR 25.0%
! TGGCATATATGTTAGATATT+TGG + chr1_1:69727969-69727988 Msa0039770:three_prime_UTR 25.0%
!! ATTCAAATAAGATGCTACTT+AGG + chr1_1:69728103-69728122 Msa0039770:three_prime_UTR 25.0%
TAAAATTTACCTTCTCATGG+TGG - chr1_1:69721615-69721634 None:intergenic 30.0%
! GTCTAAAATTTACCTTCTCA+TGG - chr1_1:69721618-69721637 None:intergenic 30.0%
ACTACAAGAACAGATAGATA+CGG - chr1_1:69722035-69722054 None:intergenic 30.0%
TACGATATTGGATACTTGAT+GGG - chr1_1:69722445-69722464 None:intergenic 30.0%
AGTATCCAATATCGTAGTAT+TGG + chr1_1:69722449-69722468 Msa0039770:intron 30.0%
! AAAGAATGGCTAAGAAGTAT+AGG - chr1_1:69722486-69722505 None:intergenic 30.0%
! TACTTCTTAGCCATTCTTTT+TGG + chr1_1:69722487-69722506 Msa0039770:intron 30.0%
! AAGATGTATCTGAGAAGTAT+AGG - chr1_1:69722524-69722543 None:intergenic 30.0%
ATCGTATTTCGACTTAGATA+TGG - chr1_1:69722587-69722606 None:intergenic 30.0%
ATAATATATACCGATATGGG+TGG + chr1_1:69722678-69722697 Msa0039770:intron 30.0%
TAATATATACCGATATGGGT+GGG + chr1_1:69722679-69722698 Msa0039770:intron 30.0%
GCTGTAGATTTATATATGTG+TGG + chr1_1:69722735-69722754 Msa0039770:intron 30.0%
GTAGATTTATATATGTGTGG+TGG + chr1_1:69722738-69722757 Msa0039770:intron 30.0%
GTAGTGATCACATTCAAATT+GGG - chr1_1:69723045-69723064 None:intergenic 30.0%
AGTAGTGATCACATTCAAAT+TGG - chr1_1:69723046-69723065 None:intergenic 30.0%
TAGGCATCTACTAACATATT+AGG + chr1_1:69723301-69723320 Msa0039770:intron 30.0%
AGTGGGTGAATAATAATCAA+CGG - chr1_1:69723412-69723431 None:intergenic 30.0%
TTGTATGGAAATCATGTAGT+GGG - chr1_1:69723429-69723448 None:intergenic 30.0%
TACATGATTTCCATACAACA+AGG + chr1_1:69723431-69723450 Msa0039770:intron 30.0%
!!! AGGAGTGCTTCTAAATTTTA+CGG - chr1_1:69723524-69723543 None:intergenic 30.0%
!!! CTATCTTTTAACTTCGTGTT+GGG - chr1_1:69723803-69723822 None:intergenic 30.0%
!!! ACTATCTTTTAACTTCGTGT+TGG - chr1_1:69723804-69723823 None:intergenic 30.0%
CGAAGTTAAAAGATAGTTTC+TGG + chr1_1:69723807-69723826 Msa0039770:intron 30.0%
TATGCTAGGATTATTATCAG+TGG + chr1_1:69723888-69723907 Msa0039770:intron 30.0%
ATGCTAGGATTATTATCAGT+GGG + chr1_1:69723889-69723908 Msa0039770:intron 30.0%
TTTATTAAAAGATGCACCCA+AGG - chr1_1:69723935-69723954 None:intergenic 30.0%
TAAAACTAGCATTAGATGCT+TGG + chr1_1:69724039-69724058 Msa0039770:intron 30.0%
ATGGACTTCTTATTGAAACA+TGG + chr1_1:69724073-69724092 Msa0039770:intron 30.0%
AGTAACAACAAATGACCATA+AGG - chr1_1:69724199-69724218 None:intergenic 30.0%
!! GTCATTTGTTGTTACTTCAT+AGG + chr1_1:69724203-69724222 Msa0039770:intron 30.0%
TTGTGTGTAAACAATATGCT+AGG + chr1_1:69724321-69724340 Msa0039770:intron 30.0%
TATGCTAGGATTACTATCAA+TGG + chr1_1:69724335-69724354 Msa0039770:intron 30.0%
ATGCTAGGATTACTATCAAT+GGG + chr1_1:69724336-69724355 Msa0039770:intron 30.0%
! CACATTTCTGTATTTCTACA+AGG - chr1_1:69724558-69724577 None:intergenic 30.0%
! CTGGATATTCAAGTGAATTT+TGG - chr1_1:69724624-69724643 None:intergenic 30.0%
ATAAGATTCTAACTACCAAG+AGG - chr1_1:69724683-69724702 None:intergenic 30.0%
TTATTCTGATTTAGGAGAAG+AGG + chr1_1:69724699-69724718 Msa0039770:intron 30.0%
AATCTTTGCAACCATAGAAA+AGG - chr1_1:69724727-69724746 None:intergenic 30.0%
!!! TTTGTTTGTTTTACATGCAG+TGG + chr1_1:69724823-69724842 Msa0039770:intron 30.0%
!!! TTGCCATTTTTCTCATTTTC+TGG - chr1_1:69724922-69724941 None:intergenic 30.0%
!! GAAGAAATTAAAGGCATTTC+AGG + chr1_1:69724945-69724964 Msa0039770:CDS 30.0%
TCAGTAGTATACCAACTTAT+AGG - chr1_1:69725082-69725101 None:intergenic 30.0%
TGAAAAGGGAGTAAGATAAA+TGG - chr1_1:69725134-69725153 None:intergenic 30.0%
TGACTTAGCTTCATAATATG+TGG - chr1_1:69725238-69725257 None:intergenic 30.0%
GTTCACATCAATTGAGATAT+AGG + chr1_1:69725374-69725393 Msa0039770:intron 30.0%
TAGAAAGAGTAAAAGGACTT+TGG - chr1_1:69725580-69725599 None:intergenic 30.0%
CTTGTATAACTCTATAGCTA+TGG - chr1_1:69725840-69725859 None:intergenic 30.0%
AGAAATCACCACAATTTATG+AGG - chr1_1:69725866-69725885 None:intergenic 30.0%
CATCTCTTCTTTACAGAATA+AGG - chr1_1:69726000-69726019 None:intergenic 30.0%
! ATGAGAGAACTTCCATTTTA+TGG + chr1_1:69726078-69726097 Msa0039770:intron 30.0%
AACTGAAATCATACCTAGAT+TGG + chr1_1:69726120-69726139 Msa0039770:intron 30.0%
! AAGAATAAGTTGAGGAAAAC+AGG - chr1_1:69726261-69726280 None:intergenic 30.0%
TTACAAGCAAGAATAAGTTG+AGG - chr1_1:69726269-69726288 None:intergenic 30.0%
GCATTAAAAAAAAGTGACAG+TGG - chr1_1:69726341-69726360 None:intergenic 30.0%
AGAGAATTTCATAAACTTGC+TGG + chr1_1:69726385-69726404 Msa0039770:intron 30.0%
CTTTGATATATTTACACCTG+AGG + chr1_1:69726762-69726781 Msa0039770:CDS 30.0%
TATAATGAAAGAAGAGCCAT+CGG + chr1_1:69726841-69726860 Msa0039770:CDS 30.0%
! AAACTAATTTTTACCTCCTC+GGG - chr1_1:69726883-69726902 None:intergenic 30.0%
! ATCGCCTTTATTATGGTTTT+CGG + chr1_1:69727310-69727329 Msa0039770:CDS 30.0%
TAGTCCGAAAACCATAATAA+AGG - chr1_1:69727317-69727336 None:intergenic 30.0%
TTCTCCCTATCAATGAAAAT+GGG - chr1_1:69727369-69727388 None:intergenic 30.0%
ATTCTCCCTATCAATGAAAA+TGG - chr1_1:69727370-69727389 None:intergenic 30.0%
! ATTTTCATTGATAGGGAGAA+TGG + chr1_1:69727369-69727388 Msa0039770:CDS 30.0%
GAATTTGTATAGAAAGACTC+GGG - chr1_1:69727474-69727493 None:intergenic 30.0%
ACAAATATGACCAGAAAATC+TGG - chr1_1:69727734-69727753 None:intergenic 30.0%
CATCAGTAGAACTAATAATG+TGG - chr1_1:69727761-69727780 None:intergenic 30.0%
!! CACATTATTAGTTCTACTGA+TGG + chr1_1:69727759-69727778 Msa0039770:three_prime_UTR 30.0%
GTAACTATATAAGTGCCTTT+CGG - chr1_1:69727929-69727948 None:intergenic 30.0%
! CATTAACATCAGTTTCAAGT+AGG - chr1_1:69728074-69728093 None:intergenic 30.0%
TGAGTTTACAGTGAAGAATG+AGG - chr1_1:69721551-69721570 None:intergenic 35.0%
!! TCAATCCATTTTTCGATCAG+AGG + chr1_1:69721843-69721862 Msa0039770:CDS 35.0%
TACAAGAACAGATAGATACG+GGG - chr1_1:69722033-69722052 None:intergenic 35.0%
CTACAAGAACAGATAGATAC+GGG - chr1_1:69722034-69722053 None:intergenic 35.0%
TATTTGCGTGTTCGATGTAA+CGG + chr1_1:69722167-69722186 Msa0039770:CDS 35.0%
AACAGTGAATGCACTAAATC+AGG - chr1_1:69722290-69722309 None:intergenic 35.0%
! GATACTTGATGGGTATGTAT+TGG - chr1_1:69722435-69722454 None:intergenic 35.0%
CTACGATATTGGATACTTGA+TGG - chr1_1:69722446-69722465 None:intergenic 35.0%
AATATATACCGATATGGGTG+GGG + chr1_1:69722680-69722699 Msa0039770:intron 35.0%
CAGCTAATTTCTCATAGACA+TGG - chr1_1:69722719-69722738 None:intergenic 35.0%
!! ACCCTTTAAGGTGAAATAGT+GGG + chr1_1:69723187-69723206 Msa0039770:intron 35.0%
CTCAATTGGTAGGGATATTA+CGG - chr1_1:69723245-69723264 None:intergenic 35.0%
AACTCAACAGTTTGTAGTGA+AGG + chr1_1:69723332-69723351 Msa0039770:intron 35.0%
GTTGTATGGAAATCATGTAG+TGG - chr1_1:69723430-69723449 None:intergenic 35.0%
! ACAGTTATCTCCTTGTTGTA+TGG - chr1_1:69723444-69723463 None:intergenic 35.0%
! AGTGCTTCTAAATTTTACGG+AGG - chr1_1:69723521-69723540 None:intergenic 35.0%
ATAAGGTCTTTCTCAATGGA+TGG - chr1_1:69723733-69723752 None:intergenic 35.0%
ATCCATTGAGAAAGACCTTA+TGG + chr1_1:69723732-69723751 Msa0039770:intron 35.0%
AACCATAAGGTCTTTCTCAA+TGG - chr1_1:69723737-69723756 None:intergenic 35.0%
ATCTGATAGCAAGTAATTGC+TGG + chr1_1:69723844-69723863 Msa0039770:intron 35.0%
TTGTGTCGAAACAATATGCT+AGG + chr1_1:69723874-69723893 Msa0039770:intron 35.0%
TGCTAGGATTATTATCAGTG+GGG + chr1_1:69723890-69723909 Msa0039770:intron 35.0%
! ATTTTCCATTCGATTGACCT+TGG + chr1_1:69723915-69723934 Msa0039770:intron 35.0%
! TTTTCCATTCGATTGACCTT+GGG + chr1_1:69723916-69723935 Msa0039770:intron 35.0%
! CCTTTCTAAGAACATGCAAA+TGG - chr1_1:69723997-69724016 None:intergenic 35.0%
CCATTTGCATGTTCTTAGAA+AGG + chr1_1:69723994-69724013 Msa0039770:intron 35.0%
ATGCTTGGTCATTTATCAGA+TGG + chr1_1:69724054-69724073 Msa0039770:intron 35.0%
ATAAGGTCTTTCTCAATGGA+TGG - chr1_1:69723733-69723752 None:intergenic 35.0%
ATCCATTGAGAAAGACCTTA+TGG + chr1_1:69723732-69723751 Msa0039770:intron 35.0%
ATCTGATAGCAAGTAATTGC+TGG + chr1_1:69723844-69723863 Msa0039770:intron 35.0%
TGCTAGGATTACTATCAATG+GGG + chr1_1:69724337-69724356 Msa0039770:intron 35.0%
ATTTGCCATTCACTTGACAT+TGG + chr1_1:69724362-69724381 Msa0039770:intron 35.0%
TTTGCCATTCACTTGACATT+GGG + chr1_1:69724363-69724382 Msa0039770:intron 35.0%
TTAAACTAGCATCAGATGCT+TGG + chr1_1:69724478-69724497 Msa0039770:intron 35.0%
ATGCTTGGTCATTTATCAGA+TGG + chr1_1:69724054-69724073 Msa0039770:intron 35.0%
!!! TGTTTTTGTTTTGGACCTCT+TGG + chr1_1:69724665-69724684 Msa0039770:intron 35.0%
TTCTATGGTTGCAAAGATTC+TGG + chr1_1:69724728-69724747 Msa0039770:intron 35.0%
!! AACTTATAGGAGCATCTCTA+GGG - chr1_1:69725069-69725088 None:intergenic 35.0%
TGATGCTCTCAAGAAAATGA+AGG + chr1_1:69725099-69725118 Msa0039770:CDS 35.0%
CTCAAGAAAATGAAGGAACA+TGG + chr1_1:69725106-69725125 Msa0039770:CDS 35.0%
TGTCAATTTCTTCAGCTAAC+CGG - chr1_1:69725159-69725178 None:intergenic 35.0%
! ATGGATATGTTGTCATTTGC+TGG + chr1_1:69725319-69725338 Msa0039770:CDS 35.0%
! TGGATATGTTGTCATTTGCT+GGG + chr1_1:69725320-69725339 Msa0039770:CDS 35.0%
GTGAAATTTCAATCCATCAG+TGG + chr1_1:69725505-69725524 Msa0039770:intron 35.0%
! TGTAATTTGCAACTCTTTCG+TGG + chr1_1:69725667-69725686 Msa0039770:intron 35.0%
! TTTCTTACCAAGGGTACATT+TGG + chr1_1:69725755-69725774 Msa0039770:intron 35.0%
! TAGCAATCTTGATGGTATAG+TGG + chr1_1:69725799-69725818 Msa0039770:intron 35.0%
GTGGTGATTTCTCAAAATCA+TGG + chr1_1:69725874-69725893 Msa0039770:intron 35.0%
TCTGTAAAGAAGAGATGAAG+AGG + chr1_1:69726003-69726022 Msa0039770:intron 35.0%
GACAAGGAGATTGTTCATTT+AGG + chr1_1:69726165-69726184 Msa0039770:intron 35.0%
GTGATCCGTATACAATTTCT+TGG - chr1_1:69726199-69726218 None:intergenic 35.0%
TAACCAATGGACACAAAATC+TGG - chr1_1:69726221-69726240 None:intergenic 35.0%
! TCCATTGGTTACACACATAA+TGG + chr1_1:69726230-69726249 Msa0039770:intron 35.0%
TCCATTATGTGTGTAACCAA+TGG - chr1_1:69726234-69726253 None:intergenic 35.0%
!! GTGGATTAGAATACGGAATT+GGG - chr1_1:69726322-69726341 None:intergenic 35.0%
!! AGTGGATTAGAATACGGAAT+TGG - chr1_1:69726323-69726342 None:intergenic 35.0%
!! AGTGACAGTGGATTAGAATA+CGG - chr1_1:69726329-69726348 None:intergenic 35.0%
AAATGTGCTGCACATAAACT+GGG - chr1_1:69726477-69726496 None:intergenic 35.0%
TAAATGTGCTGCACATAAAC+TGG - chr1_1:69726478-69726497 None:intergenic 35.0%
! TTGTTTCTTTGTCTGGCAAA+TGG + chr1_1:69726922-69726941 Msa0039770:intron 35.0%
GATTGATATGTTCTAACTGC+AGG + chr1_1:69727014-69727033 Msa0039770:intron 35.0%
AACTGTGATTCTCAAGTCTA+GGG - chr1_1:69727149-69727168 None:intergenic 35.0%
GCATGAAAATGTCAGAAAGA+AGG - chr1_1:69727245-69727264 None:intergenic 35.0%
! ATTTTCATGCCAACCTATGA+TGG + chr1_1:69727255-69727274 Msa0039770:CDS 35.0%
TCTCCCTATCAATGAAAATG+GGG - chr1_1:69727368-69727387 None:intergenic 35.0%
ACAAGCTTGAGTGGATATAT+AGG + chr1_1:69727614-69727633 Msa0039770:exon 35.0%
CAAGCTTGAGTGGATATATA+GGG + chr1_1:69727615-69727634 Msa0039770:exon 35.0%
AAGCTTGAGTGGATATATAG+GGG + chr1_1:69727616-69727635 Msa0039770:exon 35.0%
GGATATATAGGGGTTATTTG+TGG + chr1_1:69727626-69727645 Msa0039770:three_prime_UTR 35.0%
!!! GAGTTCGGTCTTTTTCAATT+TGG - chr1_1:69727699-69727718 None:intergenic 35.0%
GAAAATCTGGATCCTGTAAT+AGG - chr1_1:69727721-69727740 None:intergenic 35.0%
! ATTACAGGATCCAGATTTTC+TGG + chr1_1:69727721-69727740 Msa0039770:three_prime_UTR 35.0%
TCGTCTACACAACTAAATCA+GGG - chr1_1:69727836-69727855 None:intergenic 35.0%
ATCGTCTACACAACTAAATC+AGG - chr1_1:69727837-69727856 None:intergenic 35.0%
TTAGTTGTGTAGACGATAGA+AGG + chr1_1:69727840-69727859 Msa0039770:three_prime_UTR 35.0%
ACGATAGAAGGAAGATCATA+CGG + chr1_1:69727852-69727871 Msa0039770:three_prime_UTR 35.0%
! GAAGATCATACGGATTGATT+GGG + chr1_1:69727862-69727881 Msa0039770:three_prime_UTR 35.0%
CAGAAATTTCATCTGTCACT+AGG - chr1_1:69727951-69727970 None:intergenic 35.0%
CTAGTGACAGATGAAATTTC+TGG + chr1_1:69727949-69727968 Msa0039770:three_prime_UTR 35.0%
ATTAAGTCTCCACCATGAGA+AGG + chr1_1:69721603-69721622 Msa0039770:exon 40.0%
ACGTACCTCTGATCGAAAAA+TGG - chr1_1:69721851-69721870 None:intergenic 40.0%
AGATCCGTTTAGAAGAGCTT+TGG + chr1_1:69721953-69721972 Msa0039770:intron 40.0%
TGCTCCAAAGCTCTTCTAAA+CGG - chr1_1:69721960-69721979 None:intergenic 40.0%
!! TAACCATTAGTCTTACTCGG+AGG - chr1_1:69722149-69722168 None:intergenic 40.0%
TATAACTTCCCCACCCATAT+CGG - chr1_1:69722691-69722710 None:intergenic 40.0%
AAGGAGTTTGCATCCAATTC+AGG - chr1_1:69722865-69722884 None:intergenic 40.0%
AATTGGATGCAAACTCCTTC+TGG + chr1_1:69722866-69722885 Msa0039770:CDS 40.0%
GGCTAGAAATTCACCCTTTA+AGG + chr1_1:69723175-69723194 Msa0039770:intron 40.0%
!! CACCCTTTAAGGTGAAATAG+TGG + chr1_1:69723186-69723205 Msa0039770:intron 40.0%
CCCCACTATTTCACCTTAAA+GGG - chr1_1:69723191-69723210 None:intergenic 40.0%
!! CCCTTTAAGGTGAAATAGTG+GGG + chr1_1:69723188-69723207 Msa0039770:intron 40.0%
TCCCCACTATTTCACCTTAA+AGG - chr1_1:69723192-69723211 None:intergenic 40.0%
TAGGGATATTACGGTATGCT+GGG - chr1_1:69723236-69723255 None:intergenic 40.0%
TGAGCTTAGCTCAATTGGTA+GGG - chr1_1:69723254-69723273 None:intergenic 40.0%
GTGAAGGATAATGCTTGTTC+TGG + chr1_1:69723348-69723367 Msa0039770:intron 40.0%
CACTGTAATGCATTCACTAC+AGG - chr1_1:69723544-69723563 None:intergenic 40.0%
CTTTCTCAATGGATGGTCTA+AGG - chr1_1:69723726-69723745 None:intergenic 40.0%
GACCATAAGGTCTTTCTCAA+TGG - chr1_1:69724186-69724205 None:intergenic 40.0%
GCATTTGCATGTTCTTAGCA+AGG + chr1_1:69724433-69724452 Msa0039770:intron 40.0%
TTTACATGCAGTGGTTTCCA+TGG + chr1_1:69724832-69724851 Msa0039770:intron 40.0%
GCTCAACATCATAGATACCA+TGG - chr1_1:69724852-69724871 None:intergenic 40.0%
AGCACTTCATTAGAACACTG+AGG + chr1_1:69724869-69724888 Msa0039770:CDS 40.0%
!! ACTTATAGGAGCATCTCTAG+GGG - chr1_1:69725068-69725087 None:intergenic 40.0%
!! CAACTTATAGGAGCATCTCT+AGG - chr1_1:69725070-69725089 None:intergenic 40.0%
CTAGAGATGCTCCTATAAGT+TGG + chr1_1:69725068-69725087 Msa0039770:CDS 40.0%
! ATCTTACTCCCTTTTCACAC+CGG + chr1_1:69725137-69725156 Msa0039770:CDS 40.0%
TTGACAATCCTGAGTACCAA+AGG + chr1_1:69725173-69725192 Msa0039770:CDS 40.0%
TAACTCTACACCTCAACCTT+TGG - chr1_1:69725192-69725211 None:intergenic 40.0%
CGAAGATGTATGGACATGAA+GGG - chr1_1:69725292-69725311 None:intergenic 40.0%
CCTTCATGTCCATACATCTT+CGG + chr1_1:69725290-69725309 Msa0039770:CDS 40.0%
CATCTCAAACCGAAGATGTA+TGG - chr1_1:69725302-69725321 None:intergenic 40.0%
! CATACATCTTCGGTTTGAGA+TGG + chr1_1:69725300-69725319 Msa0039770:CDS 40.0%
AACTACAACAGATCCACTGA+TGG - chr1_1:69725521-69725540 None:intergenic 40.0%
! AGAGTAAAAGGACTTTGGAG+TGG - chr1_1:69725575-69725594 None:intergenic 40.0%
GTAGCTACTAGCAATCTTGA+TGG + chr1_1:69725791-69725810 Msa0039770:intron 40.0%
ACAAGCAGCCTCATAAATTG+TGG + chr1_1:69725855-69725874 Msa0039770:intron 40.0%
TCATCAACTGACAGTACACT+TGG - chr1_1:69726147-69726166 None:intergenic 40.0%
!! TGTACTGTCAGTTGATGACA+AGG + chr1_1:69726149-69726168 Msa0039770:intron 40.0%
! TCACCAGATTTTGTGTCCAT+TGG + chr1_1:69726215-69726234 Msa0039770:intron 40.0%
TAAAGATACAGCCAAACGCT+CGG - chr1_1:69726592-69726611 None:intergenic 40.0%
! TTCAGAATCTTTTGCTCCTC+AGG - chr1_1:69726781-69726800 None:intergenic 40.0%
GATATGTTCTAACTGCAGGT+TGG + chr1_1:69727018-69727037 Msa0039770:intron 40.0%
!!! TGGTCTTATTTTGCGTGCAT+TGG + chr1_1:69727038-69727057 Msa0039770:CDS 40.0%
!!! GGTCTTATTTTGCGTGCATT+GGG + chr1_1:69727039-69727058 Msa0039770:CDS 40.0%
!! TGGGTTTTGACAATTCTACC+AGG + chr1_1:69727058-69727077 Msa0039770:CDS 40.0%
CTAGGGAACAAACTTCGAAA+TGG - chr1_1:69727132-69727151 None:intergenic 40.0%
GAACTGTGATTCTCAAGTCT+AGG - chr1_1:69727150-69727169 None:intergenic 40.0%
GGTTGTTTGCAAAGTTGCTT+GGG - chr1_1:69727281-69727300 None:intergenic 40.0%
AGGTTGTTTGCAAAGTTGCT+TGG - chr1_1:69727282-69727301 None:intergenic 40.0%
AACTTTGCAAACAACCTCCT+TGG + chr1_1:69727285-69727304 Msa0039770:CDS 40.0%
CATAATAAAGGCGATGACCA+AGG - chr1_1:69727305-69727324 None:intergenic 40.0%
CTTGGTCATCGCCTTTATTA+TGG + chr1_1:69727303-69727322 Msa0039770:CDS 40.0%
! TTGCCCCCATTTTCATTGAT+AGG + chr1_1:69727361-69727380 Msa0039770:CDS 40.0%
! TGCCCCCATTTTCATTGATA+GGG + chr1_1:69727362-69727381 Msa0039770:CDS 40.0%
CTCCCTATCAATGAAAATGG+GGG - chr1_1:69727367-69727386 None:intergenic 40.0%
!! GATGTTTGACAGAAGCATTC+AGG - chr1_1:69727501-69727520 None:intergenic 40.0%
AAACTCTACACAAGCTTGAG+TGG + chr1_1:69727605-69727624 Msa0039770:exon 40.0%
TCCACAGTAATGAACTTCTG+TGG + chr1_1:69727672-69727691 Msa0039770:three_prime_UTR 40.0%
CCACAGTAATGAACTTCTGT+GGG + chr1_1:69727673-69727692 Msa0039770:three_prime_UTR 40.0%
AAAGACCGAACTCCTATTAC+AGG + chr1_1:69727706-69727725 Msa0039770:three_prime_UTR 40.0%
TGGATCCTGTAATAGGAGTT+CGG - chr1_1:69727714-69727733 None:intergenic 40.0%
CGTCTACACAACTAAATCAG+GGG - chr1_1:69727835-69727854 None:intergenic 40.0%
! GGAAGATCATACGGATTGAT+TGG + chr1_1:69727861-69727880 Msa0039770:three_prime_UTR 40.0%
TAGAGAAATGGACACCGTGT+CGG - chr1_1:69721506-69721525 None:intergenic 45.0%
TCCATTTCTCTAACCGTCAC+CGG + chr1_1:69721514-69721533 Msa0039770:five_prime_UTR 45.0%
! AATGTCGATTGTTGCAGACC+TGG + chr1_1:69721688-69721707 Msa0039770:intron 45.0%
CGATGTGTCTTCCATTCTGA+CGG - chr1_1:69721720-69721739 None:intergenic 45.0%
CGTCAGAATGGAAGACACAT+CGG + chr1_1:69721718-69721737 Msa0039770:CDS 45.0%
ATCGGAGGATCAGGATTCAA+AGG + chr1_1:69721736-69721755 Msa0039770:CDS 45.0%
!! CTTTGGAGCAATGCTGATTC+CGG + chr1_1:69721970-69721989 Msa0039770:CDS 45.0%
TACACTAGTGCTGCCTGAAT+TGG + chr1_1:69722849-69722868 Msa0039770:CDS 45.0%
ATACCTGTCATCATGCCAGA+AGG - chr1_1:69722884-69722903 None:intergenic 45.0%
! TTTCTAGCCACTACGCTACT+TGG - chr1_1:69723164-69723183 None:intergenic 45.0%
! AGGTGAAATAGTGGGGAATC+TGG + chr1_1:69723195-69723214 Msa0039770:intron 45.0%
! GGTGAAATAGTGGGGAATCT+GGG + chr1_1:69723196-69723215 Msa0039770:intron 45.0%
! GTGAAATAGTGGGGAATCTG+GGG + chr1_1:69723197-69723216 Msa0039770:intron 45.0%
AGGGATATTACGGTATGCTG+GGG - chr1_1:69723235-69723254 None:intergenic 45.0%
GTAGGGATATTACGGTATGC+TGG - chr1_1:69723237-69723256 None:intergenic 45.0%
GTGAGCTTAGCTCAATTGGT+AGG - chr1_1:69723255-69723274 None:intergenic 45.0%
ACCAATTGAGCTAAGCTCAC+AGG + chr1_1:69723255-69723274 Msa0039770:intron 45.0%
CCAATTGAGCTAAGCTCACA+GGG + chr1_1:69723256-69723275 Msa0039770:intron 45.0%
GAAACGCAAGAATATGCACG+TGG - chr1_1:69723487-69723506 None:intergenic 45.0%
TGCACCCAATGTCAAGTGAA+TGG - chr1_1:69724370-69724389 None:intergenic 45.0%
!!! GAGAAGAGGCACCTTTTCTA+TGG + chr1_1:69724713-69724732 Msa0039770:intron 45.0%
! GGCGTCGCTTTATATGCAAT+AGG + chr1_1:69724781-69724800 Msa0039770:intron 45.0%
!! TTATAGGAGCATCTCTAGGG+GGG - chr1_1:69725066-69725085 None:intergenic 45.0%
!! CTTATAGGAGCATCTCTAGG+GGG - chr1_1:69725067-69725086 None:intergenic 45.0%
TCAGCTAACCGGTGTGAAAA+GGG - chr1_1:69725148-69725167 None:intergenic 45.0%
TTCAGCTAACCGGTGTGAAA+AGG - chr1_1:69725149-69725168 None:intergenic 45.0%
ATCCTGAGTACCAAAGGTTG+AGG + chr1_1:69725179-69725198 Msa0039770:CDS 45.0%
! GTTGATAAGCTACGTGCACA+AGG + chr1_1:69725265-69725284 Msa0039770:CDS 45.0%
CCGAAGATGTATGGACATGA+AGG - chr1_1:69725293-69725312 None:intergenic 45.0%
TTCAGAGCCAAATGTACCCT+TGG - chr1_1:69725765-69725784 None:intergenic 45.0%
! CTGTCTGTTTTCCTAGATCC+CGG + chr1_1:69725915-69725934 Msa0039770:intron 45.0%
ATATCAAACACAGCTGGAGC+CGG - chr1_1:69725937-69725956 None:intergenic 45.0%
ATGAAGAGGTTGTCGCAACT+TGG + chr1_1:69726017-69726036 Msa0039770:intron 45.0%
TGAAGAGGTTGTCGCAACTT+GGG + chr1_1:69726018-69726037 Msa0039770:intron 45.0%
CAGTACACTTGGTCCAATCT+AGG - chr1_1:69726136-69726155 None:intergenic 45.0%
AAAGATACAGCCAAACGCTC+GGG - chr1_1:69726591-69726610 None:intergenic 45.0%
ACCAGGATATATCTTGCAGC+TGG + chr1_1:69727075-69727094 Msa0039770:CDS 45.0%
TCCAGCTGCAAGATATATCC+TGG - chr1_1:69727079-69727098 None:intergenic 45.0%
CTTGCAGCTGGAGAATTGTT+TGG + chr1_1:69727087-69727106 Msa0039770:CDS 45.0%
CAGCTGGAGAATTGTTTGGT+GGG + chr1_1:69727091-69727110 Msa0039770:CDS 45.0%
! AGCTGGAGAATTGTTTGGTG+GGG + chr1_1:69727092-69727111 Msa0039770:CDS 45.0%
!! AAGAGCTTGCTGAGAACACT+AGG + chr1_1:69727184-69727203 Msa0039770:CDS 45.0%
!! AGAGCTTGCTGAGAACACTA+GGG + chr1_1:69727185-69727204 Msa0039770:CDS 45.0%
! AGGTTCTGCTGTCGATTACA+TGG + chr1_1:69727215-69727234 Msa0039770:CDS 45.0%
AAAGTTGCTTGGGCCATCAT+AGG - chr1_1:69727271-69727290 None:intergenic 45.0%
AATAAAGGCGATGACCAAGG+AGG - chr1_1:69727302-69727321 None:intergenic 45.0%
!! ACGAATCCCCGATTTTGATG+AGG + chr1_1:69727392-69727411 Msa0039770:CDS 45.0%
TAACGGCCTCATCAAAATCG+GGG - chr1_1:69727401-69727420 None:intergenic 45.0%
CTAACGGCCTCATCAAAATC+GGG - chr1_1:69727402-69727421 None:intergenic 45.0%
CCTAACGGCCTCATCAAAAT+CGG - chr1_1:69727403-69727422 None:intergenic 45.0%
TGGGTGGACAATTGTCTTCT+GGG - chr1_1:69727533-69727552 None:intergenic 45.0%
TTGGGTGGACAATTGTCTTC+TGG - chr1_1:69727534-69727553 None:intergenic 45.0%
CCCACAGAAGTTCATTACTG+TGG - chr1_1:69727676-69727695 None:intergenic 45.0%
ATTGGGTAGAGAGCAATGTC+TGG + chr1_1:69727879-69727898 Msa0039770:three_prime_UTR 45.0%
GTGTACAATGTGCATCCGAA+AGG + chr1_1:69727911-69727930 Msa0039770:three_prime_UTR 45.0%
!!! TTATTACTTTTATATTTTTT+CGG + chr1_1:69723138-69723157 Msa0039770:intron 5.0%
ATCTGAGAAAGGGCGGTTGA+CGG - chr1_1:69721481-69721500 None:intergenic 50.0%
CGTGTCGGAGATCTGAGAAA+GGG - chr1_1:69721491-69721510 None:intergenic 50.0%
CCTTTCTCAGATCTCCGACA+CGG + chr1_1:69721489-69721508 Msa0039770:five_prime_UTR 50.0%
CAGTGAAGAATGAGGAGCAG+TGG - chr1_1:69721543-69721562 None:intergenic 50.0%
CAGAATGGAAGACACATCGG+AGG + chr1_1:69721721-69721740 Msa0039770:CDS 50.0%
!! TTAGTCTTACTCGGAGGAGC+TGG - chr1_1:69722143-69722162 None:intergenic 50.0%
GCTCCTCCGAGTAAGACTAA+TGG + chr1_1:69722143-69722162 Msa0039770:intron 50.0%
TTGCGTGTTCGATGTAACGG+TGG + chr1_1:69722170-69722189 Msa0039770:CDS 50.0%
CTAATGCTGTTCTTGCTGCG+CGG + chr1_1:69722815-69722834 Msa0039770:CDS 50.0%
ACTCCTTCTGGCATGATGAC+AGG + chr1_1:69722878-69722897 Msa0039770:CDS 50.0%
! TTTTCGGCCAAGTAGCGTAG+TGG + chr1_1:69723154-69723173 Msa0039770:intron 50.0%
TATTACGGTATGCTGGGGCT+GGG - chr1_1:69723230-69723249 None:intergenic 50.0%
ATATTACGGTATGCTGGGGC+TGG - chr1_1:69723231-69723250 None:intergenic 50.0%
CCCTGTGAGCTTAGCTCAAT+TGG - chr1_1:69723259-69723278 None:intergenic 50.0%
TGCACCCAAGGTCAATCGAA+TGG - chr1_1:69723923-69723942 None:intergenic 50.0%
CACCTCAACCTTTGGTACTC+AGG - chr1_1:69725184-69725203 None:intergenic 50.0%
AGTGTGTGCACAACACGTCT+GGG - chr1_1:69725698-69725717 None:intergenic 50.0%
AAGTGTGTGCACAACACGTC+TGG - chr1_1:69725699-69725718 None:intergenic 50.0%
TATCAAACACAGCTGGAGCC+GGG - chr1_1:69725936-69725955 None:intergenic 50.0%
AGTCAATGGGCATTTGCCGA+TGG - chr1_1:69726860-69726879 None:intergenic 50.0%
TTACCTCCTCGGGAGTCAAT+GGG - chr1_1:69726873-69726892 None:intergenic 50.0%
TTTACCTCCTCGGGAGTCAA+TGG - chr1_1:69726874-69726893 None:intergenic 50.0%
GCAGCTGGAGAATTGTTTGG+TGG + chr1_1:69727090-69727109 Msa0039770:CDS 50.0%
!! GAGCTTGCTGAGAACACTAG+GGG + chr1_1:69727186-69727205 Msa0039770:CDS 50.0%
!! AGCTTGCTGAGAACACTAGG+GGG + chr1_1:69727187-69727206 Msa0039770:CDS 50.0%
TTGCTTGGGCCATCATAGGT+TGG - chr1_1:69727267-69727286 None:intergenic 50.0%
! GGGGCAAGAGCTTTTCTATC+AGG - chr1_1:69727348-69727367 None:intergenic 50.0%
!! CCGATTTTGATGAGGCCGTT+AGG + chr1_1:69727400-69727419 Msa0039770:CDS 50.0%
TCGGGAGAAACACGCTTATG+AGG - chr1_1:69727456-69727475 None:intergenic 50.0%
GTCGGAGATCTGAGAAAGGG+CGG - chr1_1:69721488-69721507 None:intergenic 55.0%
CCGTGTCGGAGATCTGAGAA+AGG - chr1_1:69721492-69721511 None:intergenic 55.0%
! GCCGGTGACGGTTAGAGAAA+TGG - chr1_1:69721518-69721537 None:intergenic 55.0%
GAATGAGGAGCAGTGGTTGC+CGG - chr1_1:69721536-69721555 None:intergenic 55.0%
CCATTCTGACGGTGAAGTCC+AGG - chr1_1:69721709-69721728 None:intergenic 55.0%
CCTGGACTTCACCGTCAGAA+TGG + chr1_1:69721706-69721725 Msa0039770:CDS 55.0%
GGAAGACACATCGGAGGATC+AGG + chr1_1:69721727-69721746 Msa0039770:CDS 55.0%
!! TGGAGCAATGCTGATTCCGG+TGG + chr1_1:69721973-69721992 Msa0039770:CDS 55.0%
!! GCAATGCTGATTCCGGTGGT+TGG + chr1_1:69721977-69721996 Msa0039770:CDS 55.0%
ATACGGGGCCAATGAGAACG+CGG - chr1_1:69722018-69722037 None:intergenic 55.0%
ATTACGGTATGCTGGGGCTG+GGG - chr1_1:69723229-69723248 None:intergenic 55.0%
AGAGGTTGTCGCAACTTGGG+AGG + chr1_1:69726021-69726040 Msa0039770:intron 55.0%
GAGGTTGTCGCAACTTGGGA+GGG + chr1_1:69726022-69726041 Msa0039770:intron 55.0%
AGGTTGTCGCAACTTGGGAG+GGG + chr1_1:69726023-69726042 Msa0039770:intron 55.0%
! GGAGGGGTTTGGAGCTAGTA+AGG + chr1_1:69726039-69726058 Msa0039770:intron 55.0%
CCAAACGCTCGGGACATAAC+AGG - chr1_1:69726581-69726600 None:intergenic 55.0%
CCTGTTATGTCCCGAGCGTT+TGG + chr1_1:69726578-69726597 Msa0039770:intron 55.0%
!! CAAATGCCCATTGACTCCCG+AGG + chr1_1:69726864-69726883 Msa0039770:CDS 55.0%
TGCTGAGAACACTAGGGGGT+TGG + chr1_1:69727191-69727210 Msa0039770:CDS 55.0%
TGAGAAAGGGCGGTTGACGG+TGG - chr1_1:69721478-69721497 None:intergenic 60.0%
TGAGAACGCGGCGACGATGA+CGG - chr1_1:69722006-69722025 None:intergenic 60.0%
CATCGTCGCCGCGTTCTCAT+TGG + chr1_1:69722007-69722026 Msa0039770:CDS 60.0%
!! TAGGAGCATCTCTAGGGGGG+CGG - chr1_1:69725063-69725082 None:intergenic 60.0%
GTCGCAACTTGGGAGGGGTT+TGG + chr1_1:69726028-69726047 Msa0039770:intron 60.0%
!! ATGCCCATTGACTCCCGAGG+AGG + chr1_1:69726867-69726886 Msa0039770:CDS 60.0%
! GAGAACACTAGGGGGTTGGC+AGG + chr1_1:69727195-69727214 Msa0039770:CDS 60.0%
GACGGTGGAGGAGTGGTGGT+GGG - chr1_1:69721463-69721482 None:intergenic 65.0%
TGACGGTGGAGGAGTGGTGG+TGG - chr1_1:69721464-69721483 None:intergenic 65.0%
GGTTGACGGTGGAGGAGTGG+TGG - chr1_1:69721467-69721486 None:intergenic 65.0%
GAAAGGGCGGTTGACGGTGG+AGG - chr1_1:69721475-69721494 None:intergenic 65.0%
GGAGCAGTGGTTGCCGGTGA+CGG - chr1_1:69721530-69721549 None:intergenic 65.0%
! CGATGACGGTCGCCAACCAC+CGG - chr1_1:69721992-69722011 None:intergenic 65.0%
CACAGCTGGAGCCGGGATCT+AGG - chr1_1:69725929-69725948 None:intergenic 65.0%
GGCGGTTGACGGTGGAGGAG+TGG - chr1_1:69721470-69721489 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 69721439 69728130 69721439 ID=Msa0039770;Name=Msa0039770
chr1_1 mRNA 69721439 69728130 69721439 ID=Msa0039770-mRNA-1;Parent=Msa0039770;Name=Msa0039770-mRNA-1;_AED=0.09;_eAED=0.09;_QI=178|1|1|1|1|1|9|507|510
chr1_1 exon 69721439 69721624 69721439 ID=Msa0039770-mRNA-1:exon:22783;Parent=Msa0039770-mRNA-1
chr1_1 exon 69721705 69721864 69721705 ID=Msa0039770-mRNA-1:exon:22784;Parent=Msa0039770-mRNA-1
chr1_1 exon 69721955 69722033 69721955 ID=Msa0039770-mRNA-1:exon:22785;Parent=Msa0039770-mRNA-1
chr1_1 exon 69722144 69722214 69722144 ID=Msa0039770-mRNA-1:exon:22786;Parent=Msa0039770-mRNA-1
chr1_1 exon 69722811 69722899 69722811 ID=Msa0039770-mRNA-1:exon:22787;Parent=Msa0039770-mRNA-1
chr1_1 exon 69724843 69724966 69724843 ID=Msa0039770-mRNA-1:exon:22788;Parent=Msa0039770-mRNA-1
chr1_1 exon 69725058 69725341 69725058 ID=Msa0039770-mRNA-1:exon:22789;Parent=Msa0039770-mRNA-1
chr1_1 exon 69726759 69726888 69726759 ID=Msa0039770-mRNA-1:exon:22790;Parent=Msa0039770-mRNA-1
chr1_1 exon 69727036 69728130 69727036 ID=Msa0039770-mRNA-1:exon:22791;Parent=Msa0039770-mRNA-1
chr1_1 five_prime_UTR 69721439 69721616 69721439 ID=Msa0039770-mRNA-1:five_prime_utr;Parent=Msa0039770-mRNA-1
chr1_1 CDS 69721617 69721624 69721617 ID=Msa0039770-mRNA-1:cds;Parent=Msa0039770-mRNA-1
chr1_1 CDS 69721705 69721864 69721705 ID=Msa0039770-mRNA-1:cds;Parent=Msa0039770-mRNA-1
chr1_1 CDS 69721955 69722033 69721955 ID=Msa0039770-mRNA-1:cds;Parent=Msa0039770-mRNA-1
chr1_1 CDS 69722144 69722214 69722144 ID=Msa0039770-mRNA-1:cds;Parent=Msa0039770-mRNA-1
chr1_1 CDS 69722811 69722899 69722811 ID=Msa0039770-mRNA-1:cds;Parent=Msa0039770-mRNA-1
chr1_1 CDS 69724843 69724966 69724843 ID=Msa0039770-mRNA-1:cds;Parent=Msa0039770-mRNA-1
chr1_1 CDS 69725058 69725341 69725058 ID=Msa0039770-mRNA-1:cds;Parent=Msa0039770-mRNA-1
chr1_1 CDS 69726759 69726888 69726759 ID=Msa0039770-mRNA-1:cds;Parent=Msa0039770-mRNA-1
chr1_1 CDS 69727036 69727623 69727036 ID=Msa0039770-mRNA-1:cds;Parent=Msa0039770-mRNA-1
chr1_1 three_prime_UTR 69727624 69728130 69727624 ID=Msa0039770-mRNA-1:three_prime_utr;Parent=Msa0039770-mRNA-1
Gene Sequence

>Msa0039770

ATGAGAAGACCTGGACTTCACCGTCAGAATGGAAGACACATCGGAGGATCAGGATTCAAAGGAATGATTGCGAAGTTATCAATTGCTGCTATCGTACTCTTGATCTGCACGTTCTCATTGTTCTACTCTTCATCAAATGAGAATGTTCAATCCATTTTTCGATCAGAGATCCGTTTAGAAGAGCTTTGGAGCAATGCTGATTCCGGTGGTTGGCGACCGTCATCGTCGCCGCGTTCTCATTGGCCCCCTCCTCCGAGTAAGACTAATGGTTATTTGCGTGTTCGATGTAACGGTGGACTGAATCAGCAGCGTACTGCAATCTCTAATGCTGTTCTTGCTGCGCGGATCATGAATGCTACACTAGTGCTGCCTGAATTGGATGCAAACTCCTTCTGGCATGATGACAGTGGTTTCCATGGTATCTATGATGTTGAGCACTTCATTAGAACACTGAGGTTTGACGTAAAAATTGTAGAAAGCATTCCAGAAAATGAGAAAAATGGCAAAAAGAAGAAATTAAAGGCATTTCAGATCCGCCCCCCTAGAGATGCTCCTATAAGTTGGTATACTACTGATGCTCTCAAGAAAATGAAGGAACATGGTGCCATTTATCTTACTCCCTTTTCACACCGGTTAGCTGAAGAAATTGACAATCCTGAGTACCAAAGGTTGAGGTGTAGAGTTAACTATCATGCTTTAAGATTCAAGCCACATATTATGAAGCTAAGTCAATCAATAGTTGATAAGCTACGTGCACAAGGACCCTTCATGTCCATACATCTTCGGTTTGAGATGGATATGTTGTCATTTGCTGGATGCTTTGATATATTTACACCTGAGGAGCAAAAGATTCTGAAGAAATATCGAGAAGAAAATTTTGCACCTAAAAAACTAGTCTATAATGAAAGAAGAGCCATCGGCAAATGCCCATTGACTCCCGAGGAGGTTGGTCTTATTTTGCGTGCATTGGGTTTTGACAATTCTACCAGGATATATCTTGCAGCTGGAGAATTGTTTGGTGGGGATCGATTTATGAATCCATTTCGAAGTTTGTTCCCTAGACTTGAGAATCACAGTTCTGTAGATCACTCTGAAGAGCTTGCTGAGAACACTAGGGGGTTGGCAGGTTCTGCTGTCGATTACATGGTCTGCCTTCTTTCTGACATTTTCATGCCAACCTATGATGGCCCAAGCAACTTTGCAAACAACCTCCTTGGTCATCGCCTTTATTATGGTTTTCGGACTACAATCAGACCTGATAGAAAAGCTCTTGCCCCCATTTTCATTGATAGGGAGAATGGACGAATCCCCGATTTTGATGAGGCCGTTAGGAAAGTAATGCTTAAAACAAACTTTGGTGAACCTCATAAGCGTGTTTCTCCCGAGTCTTTCTATACAAATTCTTGGCCTGAATGCTTCTGTCAAACATCAGCAAAGAACCCAGAAGACAATTGTCCACCCAATGATGTTTTAAATATTCTGCATGATGAATTGGTAAAAGCATCTACAGACACAAACTCTACACAAGCTTGA
Protein sequence

>Msa0039770

MRRPGLHRQNGRHIGGSGFKGMIAKLSIAAIVLLICTFSLFYSSSNENVQSIFRSEIRLEELWSNADSGGWRPSSSPRSHWPPPPSKTNGYLRVRCNGGLNQQRTAISNAVLAARIMNATLVLPELDANSFWHDDSGFHGIYDVEHFIRTLRFDVKIVESIPENEKNGKKKKLKAFQIRPPRDAPISWYTTDALKKMKEHGAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSQSIVDKLRAQGPFMSIHLRFEMDMLSFAGCFDIFTPEEQKILKKYREENFAPKKLVYNERRAIGKCPLTPEEVGLILRALGFDNSTRIYLAAGELFGGDRFMNPFRSLFPRLENHSSVDHSEELAENTRGLAGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIDRENGRIPDFDEAVRKVMLKTNFGEPHKRVSPESFYTNSWPECFCQTSAKNPEDNCPPNDVLNILHDELVKASTDTNSTQA*