AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094740 MtrunA17_Chr4g0069161 96.785 311 10 0 1 311 1 311 0.0 630
Msa0094740 MtrunA17_Chr8g0334821 39.623 318 173 4 7 307 23 338 2.25e-72 231
Msa0094740 MtrunA17_Chr8g0334821 23.051 295 192 9 28 307 211 485 1.81e-11 64.7
Msa0094740 MtrunA17_Chr5g0443161 35.036 137 80 4 16 152 30 157 1.98e-20 88.6
Msa0094740 MtrunA17_Chr5g0443161 30.000 130 88 2 174 302 31 158 7.08e-14 70.5
Msa0094740 MtrunA17_Chr5g0439971 32.414 145 88 4 12 156 54 188 3.29e-17 82.4
Msa0094740 MtrunA17_Chr5g0439971 31.915 141 92 2 169 308 54 191 1.04e-16 80.9
Msa0094740 MtrunA17_Chr3g0119031 33.582 134 85 2 176 308 56 186 2.49e-16 79.7
Msa0094740 MtrunA17_Chr3g0119031 31.138 167 95 6 9 165 40 196 2.83e-16 79.7
Msa0094740 MtrunA17_Chr1g0166871 23.871 155 110 3 20 174 14 160 6.65e-15 73.9
Msa0094740 MtrunA17_Chr1g0170261 28.082 146 93 4 13 157 52 186 9.65e-15 75.1
Msa0094740 MtrunA17_Chr1g0170261 25.946 185 128 4 129 308 8 188 3.50e-13 70.1
Msa0094740 MtrunA17_Chr5g0443194 33.553 152 91 5 40 190 37 179 1.84e-13 70.5
Msa0094740 MtrunA17_Chr5g0443194 29.921 127 85 2 177 302 20 143 1.57e-11 64.7
Msa0094740 MtrunA17_Chr3g0137501 19.580 286 186 8 39 301 432 696 1.53e-11 65.5
Msa0094740 MtrunA17_Chr5g0442971 30.612 147 82 6 14 160 41 167 5.00e-11 63.5
Msa0094740 MtrunA17_Chr7g0268251 26.429 140 96 3 23 162 17 149 1.00e-10 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094740 AT3G17380.1 52.632 304 141 1 6 309 8 308 9.29e-112 326
Msa0094740 AT5G26280.1 32.353 306 201 4 7 311 49 349 7.64e-49 166
Msa0094740 AT5G26280.3 32.353 306 201 4 7 311 68 368 1.83e-48 166
Msa0094740 AT5G26260.1 32.895 304 198 4 9 311 52 350 4.66e-48 164
Msa0094740 AT5G26290.1 32.026 306 197 4 6 311 41 335 2.59e-44 154
Msa0094740 AT4G09780.2 34.641 306 183 10 8 309 53 345 6.99e-43 152
Msa0094740 AT2G04170.4 32.082 293 193 4 17 308 7 294 9.08e-43 149
Msa0094740 AT2G04170.3 32.082 293 193 4 17 308 7 294 9.08e-43 149
Msa0094740 AT5G26300.1 30.945 307 202 6 7 309 49 349 2.29e-42 149
Msa0094740 AT4G09770.4 33.333 306 186 10 8 309 26 317 4.83e-42 148
Msa0094740 AT4G09770.2 33.333 303 184 10 11 309 3 291 5.85e-42 147
Msa0094740 AT4G09770.1 33.333 303 184 10 11 309 3 291 5.85e-42 147
Msa0094740 AT2G04170.6 32.082 293 193 4 17 308 89 376 6.34e-42 149
Msa0094740 AT2G04170.2 32.082 293 193 4 17 308 129 416 1.31e-41 149
Msa0094740 AT2G04170.1 32.082 293 193 4 17 308 129 416 1.31e-41 149
Msa0094740 AT4G09780.1 33.333 315 186 9 8 309 53 356 8.92e-41 147
Msa0094740 AT3G28220.1 32.404 287 183 7 17 300 80 358 1.22e-40 145
Msa0094740 AT3G20370.2 30.897 301 195 7 10 304 56 349 1.54e-40 145
Msa0094740 AT3G20370.1 30.897 301 195 7 10 304 78 371 2.21e-40 145
Msa0094740 AT3G20360.1 30.892 314 198 9 1 301 45 352 1.20e-39 142
Msa0094740 AT4G09770.5 35.060 251 148 8 8 255 26 264 1.97e-38 137
Msa0094740 AT3G22080.1 28.664 307 205 7 10 310 12 310 2.26e-38 138
Msa0094740 AT4G09770.3 35.081 248 146 8 11 255 3 238 3.15e-38 136
Msa0094740 AT5G26320.1 28.571 308 212 5 7 311 49 351 6.29e-37 135
Msa0094740 AT2G04170.5 33.884 242 155 3 14 255 126 362 7.05e-37 135
Msa0094740 AT2G04190.1 29.836 305 203 7 8 308 110 407 1.86e-35 132
Msa0094740 AT5G26280.2 28.431 306 190 5 7 311 49 326 3.97e-35 130
Msa0094740 AT2G15710.1 30.420 286 179 7 5 287 86 354 1.22e-33 127
Msa0094740 AT1G69650.1 27.244 312 187 9 8 311 13 292 4.58e-32 121
Msa0094740 AT4G00780.1 30.137 292 183 8 20 307 22 296 5.25e-32 121
Msa0094740 AT4G01390.1 29.236 301 173 8 20 306 22 296 4.51e-31 118
Msa0094740 AT2G04170.7 37.306 193 116 3 14 206 126 313 1.35e-30 117
Msa0094740 AT1G58270.1 28.333 300 194 9 17 308 94 380 1.80e-29 116
Msa0094740 AT3G22085.1 28.996 269 164 7 6 272 7 250 2.02e-29 114
Msa0094740 AT1G65150.2 31.667 240 147 7 36 272 32 257 1.02e-28 112
Msa0094740 AT1G65150.1 31.667 240 147 7 36 272 32 257 1.02e-28 112
Msa0094740 AT3G20380.1 24.830 294 215 3 8 301 77 364 1.11e-28 114
Msa0094740 AT2G32870.1 24.843 318 212 7 5 308 110 414 1.20e-25 106
Msa0094740 AT1G65370.1 28.821 229 147 6 78 304 7 221 6.93e-25 100
Msa0094740 AT1G69660.1 26.957 230 161 4 82 310 5 228 1.75e-23 96.7
Msa0094740 AT2G32880.1 25.000 320 211 10 5 308 10 316 1.87e-23 98.6
Msa0094740 AT2G32880.2 26.336 262 169 8 5 255 10 258 6.13e-21 90.9
Msa0094740 AT2G32870.2 26.154 260 170 6 5 255 110 356 5.36e-20 89.7
Msa0094740 AT3G46190.1 25.510 294 178 7 14 304 29 284 1.71e-19 87.0
Msa0094740 AT3G46190.2 25.510 294 178 7 14 304 49 304 2.09e-19 87.0
Msa0094740 AT1G65050.2 34.545 110 68 2 36 145 32 137 7.13e-18 79.7
Msa0094740 AT1G65050.1 34.545 110 68 2 36 145 32 137 7.13e-18 79.7
Msa0094740 AT5G06600.3 31.250 160 94 5 1 154 32 181 6.59e-16 79.0
Msa0094740 AT5G06600.3 32.143 140 91 2 170 308 50 186 6.78e-15 75.9
Msa0094740 AT5G06600.1 31.250 160 94 5 1 154 32 181 7.53e-16 78.6
Msa0094740 AT5G06600.1 32.143 140 91 2 170 308 50 186 6.21e-15 75.9
Msa0094740 AT5G06600.2 31.250 160 94 5 1 154 31 180 7.59e-16 78.6
Msa0094740 AT5G06600.2 32.143 140 91 2 170 308 49 185 6.15e-15 75.9
Msa0094740 AT3G11910.4 31.008 129 82 3 26 154 58 179 1.23e-15 78.2
Msa0094740 AT3G11910.4 31.429 140 92 2 170 308 48 184 1.63e-14 74.7
Msa0094740 AT3G11910.2 31.008 129 82 3 26 154 58 179 1.23e-15 78.2
Msa0094740 AT3G11910.2 31.429 140 92 2 170 308 48 184 1.63e-14 74.7
Msa0094740 AT3G11910.3 31.008 129 82 3 26 154 59 180 1.24e-15 78.2
Msa0094740 AT3G11910.3 31.429 140 92 2 170 308 49 185 1.69e-14 74.7
Msa0094740 AT3G11910.1 31.008 129 82 3 26 154 59 180 1.24e-15 78.2
Msa0094740 AT3G11910.1 31.429 140 92 2 170 308 49 185 1.69e-14 74.7
Msa0094740 AT3G58340.2 32.886 149 89 4 169 311 1 144 2.58e-15 75.5
Msa0094740 AT3G58340.1 32.886 149 89 4 169 311 1 144 2.92e-15 75.5
Msa0094740 AT3G58210.1 32.143 140 93 2 169 307 1 139 2.38e-14 72.8
Msa0094740 AT3G58210.1 32.576 132 79 4 24 154 13 135 8.81e-12 65.5
Msa0094740 AT1G31390.1 32.540 126 80 2 169 291 1 124 7.66e-13 67.8
Msa0094740 AT3G58370.1 32.215 149 93 3 168 310 1 147 1.01e-12 67.8
Msa0094740 AT3G58370.1 27.941 204 134 5 24 227 14 204 7.44e-11 62.4
Msa0094740 AT3G58360.1 31.690 142 89 3 169 307 1 137 3.18e-12 66.6
Msa0094740 AT3G58410.2 31.579 133 86 2 176 308 8 135 4.68e-12 66.2
Msa0094740 AT1G31400.1 31.724 145 91 3 169 310 1 140 1.85e-11 63.9
Msa0094740 AT2G05420.1 32.353 136 85 3 178 307 11 145 2.04e-11 63.9

Find 96 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTCTGTGCATATATTT+TGG 0.140548 1_2:+78087002 Msa0094730:three_prime_UTR
CAACAAATCGTTGTTTATAT+TGG 0.212724 1_2:-78086375 Msa0094740:three_prime_UTR
GTCTACTTGCAGCTAATTAT+TGG 0.237931 1_2:-78086771 Msa0094740:intron
TATGAGTGTAACAATCTAAT+TGG 0.265742 1_2:-78086490 Msa0094740:three_prime_UTR
GATGTTGAGGTTACAGTTCT+TGG 0.266368 1_2:-78086646 Msa0094740:CDS
TTTAATAGATGATGTGAAAA+AGG 0.278698 1_2:-78087523 Msa0094740:intron
TCCTCTCAAGGATTTCAATC+TGG 0.293183 1_2:-78087451 Msa0094740:CDS
CATCCTCCTCCTTGTAAGTT+TGG 0.322568 1_2:-78086185 Msa0094740:three_prime_UTR
AGCAATCCAAGCATCAGTTT+TGG 0.342021 1_2:-78086960 Msa0094740:CDS
AATCTCCCATACATGCTTGT+AGG 0.374747 1_2:+78087314 None:intergenic
CCCTCCCCTACAAGCATGTA+TGG 0.374887 1_2:-78087320 Msa0094740:CDS
CGTTGTTTATATTGGAGATT+CGG 0.378593 1_2:-78086367 Msa0094740:three_prime_UTR
CTGGATGATATATGTGCATT+TGG 0.382581 1_2:-78087411 Msa0094740:CDS
GATTAAAGACTTCTCAAAGT+TGG 0.382721 1_2:-78087295 Msa0094740:CDS
GAGGAACAAACCGTCATCTT+TGG 0.387041 1_2:+78088433 None:intergenic
CTGTTGGGTTAGCTAAAGTT+AGG 0.387750 1_2:+78087040 Msa0094730:three_prime_UTR
ATTACTGCACAAAATAAATC+TGG 0.389938 1_2:+78086717 Msa0094730:three_prime_UTR
CTCCTTGTAAGTTTGGTAGA+TGG 0.391844 1_2:-78086178 Msa0094740:three_prime_UTR
TGTATATTGTATACCATTTG+TGG 0.403396 1_2:+78087932 None:intergenic
AGACTTCTCAAAGTTGGATT+CGG 0.407331 1_2:-78087289 Msa0094740:CDS
GGATCATATTTCACTATACT+TGG 0.407706 1_2:-78087771 Msa0094740:CDS
TTGTTACACTCATAGATTGC+AGG 0.409345 1_2:+78086499 Msa0094730:three_prime_UTR
TTGTAGTTTCCAACATTGAA+TGG 0.413486 1_2:+78087249 None:intergenic
TTCACAGAATGAAGGTTGAA+TGG 0.418718 1_2:-78087491 Msa0094740:CDS
TACAGCAGTGAGAAAACATT+TGG 0.420898 1_2:+78086225 Msa0094730:CDS
TTCTATAGAGAGATATGAAT+CGG 0.423671 1_2:-78087974 Msa0094740:CDS
TCACAGAATGAAGGTTGAAT+GGG 0.425550 1_2:-78087490 Msa0094740:CDS
CCTCTCAAGGATTTCAATCT+GGG 0.426272 1_2:-78087450 Msa0094740:CDS
GAGCAGAAGTCTTTGTTTGT+AGG 0.431985 1_2:-78087389 Msa0094740:CDS
GTATATGTAATTATTATGTA+TGG 0.432832 1_2:+78088471 None:intergenic
CACAATTGACAAATACTTGA+AGG 0.442560 1_2:-78086285 Msa0094740:three_prime_UTR
ACCTTTCCAAAACTGATGCT+TGG 0.443667 1_2:+78086954 Msa0094730:intron
ATCTCCCATACATGCTTGTA+GGG 0.444436 1_2:+78087315 None:intergenic
GTCATAAGACTAGCTGTAGA+TGG 0.448920 1_2:-78086153 Msa0094740:three_prime_UTR
AGCAGAAGTCTTTGTTTGTA+GGG 0.457138 1_2:-78087388 Msa0094740:CDS
GAGTAGCGGACTAGCGGACT+TGG 0.457546 1_2:+78086455 Msa0094730:three_prime_UTR
GTAAAGTACCTTGGAGAACT+AGG 0.458919 1_2:+78087660 None:intergenic
GATTTCAATCTGGGCTCTAA+AGG 0.459503 1_2:-78087441 Msa0094740:CDS
AAGCTCACTTCATCCTGGTT+GGG 0.466058 1_2:-78087735 Msa0094740:CDS
TAATTTCACCAGTCAATACC+TGG 0.466177 1_2:-78086698 Msa0094740:CDS
TATTTCACTATACTTGGCAT+TGG 0.479251 1_2:-78087765 Msa0094740:CDS
TGATCAATTTATTCCTCTCA+AGG 0.485622 1_2:-78087463 Msa0094740:CDS
GGGCTCTAAAGGTTATCTAC+TGG 0.485976 1_2:-78087430 Msa0094740:CDS
GAGAAAACATTTGGTTAACT+TGG 0.487241 1_2:+78086234 Msa0094730:exon
CCAAATCTTCTCATCTTATG+TGG 0.487490 1_2:+78086107 Msa0094730:intron
ATACAAGAATGTAGTTGCAT+TGG 0.491129 1_2:-78086582 Msa0094740:three_prime_UTR
CAAGCTCACTTCATCCTGGT+TGG 0.493535 1_2:-78087736 Msa0094740:CDS
TCTATAGAGAGATATGAATC+GGG 0.505763 1_2:-78087973 Msa0094740:CDS
AAACTGTATCCCAAAGGAAA+AGG 0.507112 1_2:-78087093 Msa0094740:CDS
GGAAATGAGTTCACAAATGT+AGG 0.512337 1_2:+78088492 None:intergenic
ACCGTCATCTTTGGTATCCA+TGG 0.513134 1_2:+78088442 None:intergenic
TTGAAGCTGGAGGCCACAAA+TGG 0.515480 1_2:-78087945 Msa0094740:intron
CTCCATCTACCAAACTTACA+AGG 0.518610 1_2:+78086176 Msa0094730:CDS
AGAATCTTTGATCATGATGA+AGG 0.521528 1_2:-78087346 Msa0094740:CDS
CAAACTTACAAGGAGGAGGA+TGG 0.523873 1_2:+78086186 Msa0094730:CDS
GACTCTAAGCCATTCAATGT+TGG 0.526449 1_2:-78087258 Msa0094740:CDS
CATTTGCTTTGTAGATGTTG+AGG 0.531213 1_2:-78086659 Msa0094740:CDS
AGGGAAAACTACACAGGTAA+AGG 0.536644 1_2:-78087369 Msa0094740:CDS
CCCATACATGCTTGTAGGGG+AGG 0.542077 1_2:+78087319 None:intergenic
AAAGGAAAAGGTACCGACTC+GGG 0.545865 1_2:-78087081 Msa0094740:CDS
GAATCGGGGAAGTTTGAAGC+TGG 0.551406 1_2:-78087958 Msa0094740:CDS
TAGATACCCCAGGTATTGAC+TGG 0.568960 1_2:+78086690 Msa0094730:three_prime_UTR
CAAAGGAAAAGGTACCGACT+CGG 0.570075 1_2:-78087082 Msa0094740:CDS
AAACAAAAGCAAGAATGTAA+AGG 0.570463 1_2:-78087792 Msa0094740:CDS
GAATCAAGCTCACTTCATCC+TGG 0.576113 1_2:-78087740 Msa0094740:CDS
CACAGAATGAAGGTTGAATG+GGG 0.578801 1_2:-78087489 Msa0094740:CDS
CCATACATGCTTGTAGGGGA+GGG 0.581374 1_2:+78087320 None:intergenic
CTACCAAACTTACAAGGAGG+AGG 0.590671 1_2:+78086182 Msa0094730:CDS
GTTTGTAGGGAAAACTACAC+AGG 0.592836 1_2:-78087375 Msa0094740:CDS
CTTGTAAGTTTGGTAGATGG+AGG 0.594122 1_2:-78086175 Msa0094740:three_prime_UTR
AAACTTACAAGGAGGAGGAT+GGG 0.597052 1_2:+78086187 Msa0094730:CDS
TAGCTGTAGATGGAATCAAA+AGG 0.599057 1_2:-78086143 Msa0094740:three_prime_UTR
TTTACATAGATTTCCCAACC+AGG 0.601857 1_2:+78087722 None:intergenic
ATTACATATACATCTAGCCA+TGG 0.612494 1_2:-78088459 Msa0094740:exon
AATTTCACCAGTCAATACCT+GGG 0.612530 1_2:-78086697 Msa0094740:CDS
CATAGATTGCAGGATTGACA+AGG 0.619050 1_2:+78086509 Msa0094730:three_prime_UTR
CCTCCCCTACAAGCATGTAT+GGG 0.619373 1_2:-78087319 Msa0094740:CDS
TGAGGTTACAGTTCTTGGAG+TGG 0.629632 1_2:-78086641 Msa0094740:CDS
ATACCTGGGGTATCTAGTGA+AGG 0.632705 1_2:-78086683 Msa0094740:CDS
CAGATAAAACTGTATCCCAA+AGG 0.633902 1_2:-78087099 Msa0094740:CDS
TGTCCTTCACTAGATACCCC+AGG 0.633913 1_2:+78086680 Msa0094730:three_prime_UTR
TCGGGGAAGTTTGAAGCTGG+AGG 0.635431 1_2:-78087955 Msa0094740:CDS
GACAACTACCTAGTTCTCCA+AGG 0.638057 1_2:-78087668 Msa0094740:intron
GCCATGGATACCAAAGATGA+CGG 0.641327 1_2:-78088443 Msa0094740:intron
TGTTAAGAGTAGCGGACTAG+CGG 0.641760 1_2:+78086449 Msa0094730:three_prime_UTR
TCTCTATAGAATTAGTAGTG+AGG 0.653359 1_2:+78087986 None:intergenic
CCCAGATTGAAATCCTTGAG+AGG 0.660903 1_2:+78087450 None:intergenic
TGTGCCATGTTCATGACTTG+AGG 0.660953 1_2:+78086741 Msa0094730:three_prime_UTR
AGCAAGATATCTGCCCGAGT+CGG 0.666491 1_2:+78087068 Msa0094730:three_prime_UTR
AAGTTAGTTATGTATCCAAG+TGG 0.687329 1_2:-78087815 Msa0094740:CDS
TCAATGTTGGAAACTACAAG+TGG 0.691657 1_2:-78087245 Msa0094740:intron
CTATAGAGAGATATGAATCG+GGG 0.694653 1_2:-78087972 Msa0094740:CDS
TCTCCCATACATGCTTGTAG+GGG 0.699554 1_2:+78087316 None:intergenic
AGTGCCTCAAGTCATGAACA+TGG 0.700230 1_2:-78086745 Msa0094740:CDS
ATTTCACCAGTCAATACCTG+GGG 0.717112 1_2:-78086696 Msa0094740:CDS
CATCTACCAAACTTACAAGG+AGG 0.745667 1_2:+78086179 Msa0094730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAAAATTAACTCA+AGG - chr1_2:78086448-78086467 Msa0094740:three_prime_UTR 10.0%
!!! TTCATGAAATTATTTTTATA+AGG + chr1_2:78086718-78086737 Msa0094730:three_prime_UTR 10.0%
!! TTAAAAAAAAAATTAACTCA+AGG - chr1_2:78086448-78086467 Msa0094740:three_prime_UTR 10.0%
!!! TTCATGAAATTATTTTTATA+AGG + chr1_2:78086718-78086737 Msa0094730:three_prime_UTR 10.0%
!! GTATATGTAATTATTATGTA+TGG + chr1_2:78086143-78086162 Msa0094730:intron 15.0%
!! CTTATAAAAAATAAAATTGC+AGG - chr1_2:78086536-78086555 Msa0094740:three_prime_UTR 15.0%
!!! AATTTCATGAATGATAATTT+TGG - chr1_2:78086727-78086746 Msa0094740:CDS 15.0%
!! TCTTAACATGAAAAAAAATA+TGG - chr1_2:78088177-78088196 Msa0094740:intron 15.0%
!! GTATATGTAATTATTATGTA+TGG + chr1_2:78086143-78086162 Msa0094730:intron 15.0%
!! CTTATAAAAAATAAAATTGC+AGG - chr1_2:78086536-78086555 Msa0094740:three_prime_UTR 15.0%
!!! AATTTCATGAATGATAATTT+TGG - chr1_2:78086727-78086746 Msa0094740:CDS 15.0%
!! TCTTAACATGAAAAAAAATA+TGG - chr1_2:78088177-78088196 Msa0094740:intron 15.0%
!! ATGTACAATTAATAAACCAA+TGG - chr1_2:78086281-78086300 Msa0094740:three_prime_UTR 20.0%
!! TGTACAATTAATAAACCAAT+GGG - chr1_2:78086282-78086301 Msa0094740:three_prime_UTR 20.0%
!! TGAGTACATAATATATTTCA+TGG - chr1_2:78086334-78086353 Msa0094740:three_prime_UTR 20.0%
!! ATATATTTCATGGATAATGA+TGG - chr1_2:78086344-78086363 Msa0094740:three_prime_UTR 20.0%
!!! ATTTTCATTATGTAATGAAC+TGG + chr1_2:78086590-78086609 Msa0094730:three_prime_UTR 20.0%
!! AGCAATCCAAAAAAAAAATT+AGG + chr1_2:78087065-78087084 Msa0094730:three_prime_UTR 20.0%
!! TTTAATAGATGATGTGAAAA+AGG - chr1_2:78087088-78087107 Msa0094740:CDS 20.0%
!!! TTATTTAGTTTAGCAAGAAA+TGG + chr1_2:78087408-78087427 None:intergenic 20.0%
!! CAAAAAGTTATCATATAACT+TGG + chr1_2:78087488-78087507 None:intergenic 20.0%
!! ATGTACAATTAATAAACCAA+TGG - chr1_2:78086281-78086300 Msa0094740:three_prime_UTR 20.0%
!! TGTACAATTAATAAACCAAT+GGG - chr1_2:78086282-78086301 Msa0094740:three_prime_UTR 20.0%
!! TGAGTACATAATATATTTCA+TGG - chr1_2:78086334-78086353 Msa0094740:three_prime_UTR 20.0%
!! ATATATTTCATGGATAATGA+TGG - chr1_2:78086344-78086363 Msa0094740:three_prime_UTR 20.0%
!!! ATTTTCATTATGTAATGAAC+TGG + chr1_2:78086590-78086609 Msa0094730:three_prime_UTR 20.0%
!! AGCAATCCAAAAAAAAAATT+AGG + chr1_2:78087065-78087084 Msa0094730:three_prime_UTR 20.0%
!! TTTAATAGATGATGTGAAAA+AGG - chr1_2:78087088-78087107 Msa0094740:CDS 20.0%
!!! TTATTTAGTTTAGCAAGAAA+TGG + chr1_2:78087408-78087427 None:intergenic 20.0%
!! CAAAAAGTTATCATATAACT+TGG + chr1_2:78087488-78087507 None:intergenic 20.0%
!! TAATAAACCAATGGGATTTT+TGG - chr1_2:78086290-78086309 Msa0094740:three_prime_UTR 25.0%
!! AATAAACCAATGGGATTTTT+GGG - chr1_2:78086291-78086310 Msa0094740:three_prime_UTR 25.0%
!!! TTTGGGGAACAATTTTTTTT+TGG - chr1_2:78086308-78086327 Msa0094740:three_prime_UTR 25.0%
! TTCTATAGAGAGATATGAAT+CGG - chr1_2:78086637-78086656 Msa0094740:CDS 25.0%
! TGTATATTGTATACCATTTG+TGG + chr1_2:78086682-78086701 Msa0094730:three_prime_UTR 25.0%
! AAACAAAAGCAAGAATGTAA+AGG - chr1_2:78086819-78086838 Msa0094740:intron 25.0%
!! AAAAAAAAGGTAAAGTACCT+TGG + chr1_2:78086963-78086982 Msa0094730:three_prime_UTR 25.0%
!! AGATCAAAATCTATTTTCGA+GGG + chr1_2:78087014-78087033 Msa0094730:three_prime_UTR 25.0%
! TTAAACAGTTTAGTGTTTGA+CGG - chr1_2:78087036-78087055 Msa0094740:CDS 25.0%
! AAAAAGATTTCACAGAATGA+AGG - chr1_2:78087112-78087131 Msa0094740:intron 25.0%
! TTCAAACAATACTCTTTGAA+TGG + chr1_2:78087433-78087452 None:intergenic 25.0%
!! GTTATATGATAACTTTTTGC+AGG - chr1_2:78087489-78087508 Msa0094740:CDS 25.0%
!! TATTGTCTGTGCATATATTT+TGG + chr1_2:78087612-78087631 None:intergenic 25.0%
! ATTACTGCACAAAATAAATC+TGG + chr1_2:78087897-78087916 None:intergenic 25.0%
! TATGAGTGTAACAATCTAAT+TGG - chr1_2:78088121-78088140 Msa0094740:intron 25.0%
!!! TTTTTTCATGTTAAGAGTAG+CGG + chr1_2:78088173-78088192 None:intergenic 25.0%
! CAACAAATCGTTGTTTATAT+TGG - chr1_2:78088236-78088255 Msa0094740:intron 25.0%
!! TAATAAACCAATGGGATTTT+TGG - chr1_2:78086290-78086309 Msa0094740:three_prime_UTR 25.0%
!! AATAAACCAATGGGATTTTT+GGG - chr1_2:78086291-78086310 Msa0094740:three_prime_UTR 25.0%
!!! TTTGGGGAACAATTTTTTTT+TGG - chr1_2:78086308-78086327 Msa0094740:three_prime_UTR 25.0%
! TTCTATAGAGAGATATGAAT+CGG - chr1_2:78086637-78086656 Msa0094740:CDS 25.0%
! TGTATATTGTATACCATTTG+TGG + chr1_2:78086682-78086701 Msa0094730:three_prime_UTR 25.0%
! AAACAAAAGCAAGAATGTAA+AGG - chr1_2:78086819-78086838 Msa0094740:intron 25.0%
!! AAAAAAAAGGTAAAGTACCT+TGG + chr1_2:78086963-78086982 Msa0094730:three_prime_UTR 25.0%
!! AGATCAAAATCTATTTTCGA+GGG + chr1_2:78087014-78087033 Msa0094730:three_prime_UTR 25.0%
! TTAAACAGTTTAGTGTTTGA+CGG - chr1_2:78087036-78087055 Msa0094740:CDS 25.0%
! AAAAAGATTTCACAGAATGA+AGG - chr1_2:78087112-78087131 Msa0094740:intron 25.0%
! TTCAAACAATACTCTTTGAA+TGG + chr1_2:78087433-78087452 None:intergenic 25.0%
!! GTTATATGATAACTTTTTGC+AGG - chr1_2:78087489-78087508 Msa0094740:CDS 25.0%
!! TATTGTCTGTGCATATATTT+TGG + chr1_2:78087612-78087631 None:intergenic 25.0%
! ATTACTGCACAAAATAAATC+TGG + chr1_2:78087897-78087916 None:intergenic 25.0%
! TATGAGTGTAACAATCTAAT+TGG - chr1_2:78088121-78088140 Msa0094740:intron 25.0%
!!! TTTTTTCATGTTAAGAGTAG+CGG + chr1_2:78088173-78088192 None:intergenic 25.0%
! CAACAAATCGTTGTTTATAT+TGG - chr1_2:78088236-78088255 Msa0094740:intron 25.0%
ATTACATATACATCTAGCCA+TGG - chr1_2:78086152-78086171 Msa0094740:three_prime_UTR 30.0%
! ATAAACCAATGGGATTTTTG+GGG - chr1_2:78086292-78086311 Msa0094740:three_prime_UTR 30.0%
! ATTCCAGATTTGTTTGAGTA+GGG + chr1_2:78086484-78086503 Msa0094730:three_prime_UTR 30.0%
! AATTCCAGATTTGTTTGAGT+AGG + chr1_2:78086485-78086504 Msa0094730:three_prime_UTR 30.0%
CACATAGAATAACTAAGCAT+AGG + chr1_2:78086511-78086530 Msa0094730:three_prime_UTR 30.0%
TCTCTATAGAATTAGTAGTG+AGG + chr1_2:78086628-78086647 Msa0094730:three_prime_UTR 30.0%
TCTATAGAGAGATATGAATC+GGG - chr1_2:78086638-78086657 Msa0094740:CDS 30.0%
AAAATGTGTTTATACCTCAC+AGG - chr1_2:78086773-78086792 Msa0094740:intron 30.0%
AAGTTAGTTATGTATCCAAG+TGG - chr1_2:78086796-78086815 Msa0094740:intron 30.0%
GGATCATATTTCACTATACT+TGG - chr1_2:78086840-78086859 Msa0094740:intron 30.0%
TATTTCACTATACTTGGCAT+TGG - chr1_2:78086846-78086865 Msa0094740:intron 30.0%
! CAGATCAAAATCTATTTTCG+AGG + chr1_2:78087015-78087034 Msa0094730:three_prime_UTR 30.0%
!!! CGGTCTCCTAATTTTTTTTT+TGG - chr1_2:78087056-78087075 Msa0094740:CDS 30.0%
TGATCAATTTATTCCTCTCA+AGG - chr1_2:78087148-78087167 Msa0094740:intron 30.0%
AGAATCTTTGATCATGATGA+AGG - chr1_2:78087265-78087284 Msa0094740:CDS 30.0%
GATTAAAGACTTCTCAAAGT+TGG - chr1_2:78087316-78087335 Msa0094740:CDS 30.0%
TTGTAGTTTCCAACATTGAA+TGG + chr1_2:78087365-78087384 None:intergenic 30.0%
! TTTAGTTTAGCAAGAAATGG+AGG + chr1_2:78087405-78087424 None:intergenic 30.0%
! GTTACACTTTGTTGTGAAAT+TGG - chr1_2:78087687-78087706 Msa0094740:CDS 30.0%
ATACAAGAATGTAGTTGCAT+TGG - chr1_2:78088029-78088048 Msa0094740:CDS 30.0%
CGTTGTTTATATTGGAGATT+CGG - chr1_2:78088244-78088263 Msa0094740:intron 30.0%
CACAATTGACAAATACTTGA+AGG - chr1_2:78088326-78088345 Msa0094740:intron 30.0%
GAGAAAACATTTGGTTAACT+TGG + chr1_2:78088380-78088399 None:intergenic 30.0%
ATTACATATACATCTAGCCA+TGG - chr1_2:78086152-78086171 Msa0094740:three_prime_UTR 30.0%
! ATAAACCAATGGGATTTTTG+GGG - chr1_2:78086292-78086311 Msa0094740:three_prime_UTR 30.0%
! ATTCCAGATTTGTTTGAGTA+GGG + chr1_2:78086484-78086503 Msa0094730:three_prime_UTR 30.0%
! AATTCCAGATTTGTTTGAGT+AGG + chr1_2:78086485-78086504 Msa0094730:three_prime_UTR 30.0%
CACATAGAATAACTAAGCAT+AGG + chr1_2:78086511-78086530 Msa0094730:three_prime_UTR 30.0%
TCTCTATAGAATTAGTAGTG+AGG + chr1_2:78086628-78086647 Msa0094730:three_prime_UTR 30.0%
TCTATAGAGAGATATGAATC+GGG - chr1_2:78086638-78086657 Msa0094740:CDS 30.0%
AAAATGTGTTTATACCTCAC+AGG - chr1_2:78086773-78086792 Msa0094740:intron 30.0%
AAGTTAGTTATGTATCCAAG+TGG - chr1_2:78086796-78086815 Msa0094740:intron 30.0%
GGATCATATTTCACTATACT+TGG - chr1_2:78086840-78086859 Msa0094740:intron 30.0%
TATTTCACTATACTTGGCAT+TGG - chr1_2:78086846-78086865 Msa0094740:intron 30.0%
! CAGATCAAAATCTATTTTCG+AGG + chr1_2:78087015-78087034 Msa0094730:three_prime_UTR 30.0%
!!! CGGTCTCCTAATTTTTTTTT+TGG - chr1_2:78087056-78087075 Msa0094740:CDS 30.0%
TGATCAATTTATTCCTCTCA+AGG - chr1_2:78087148-78087167 Msa0094740:intron 30.0%
AGAATCTTTGATCATGATGA+AGG - chr1_2:78087265-78087284 Msa0094740:CDS 30.0%
GATTAAAGACTTCTCAAAGT+TGG - chr1_2:78087316-78087335 Msa0094740:CDS 30.0%
TTGTAGTTTCCAACATTGAA+TGG + chr1_2:78087365-78087384 None:intergenic 30.0%
! TTTAGTTTAGCAAGAAATGG+AGG + chr1_2:78087405-78087424 None:intergenic 30.0%
! GTTACACTTTGTTGTGAAAT+TGG - chr1_2:78087687-78087706 Msa0094740:CDS 30.0%
ATACAAGAATGTAGTTGCAT+TGG - chr1_2:78088029-78088048 Msa0094740:CDS 30.0%
CGTTGTTTATATTGGAGATT+CGG - chr1_2:78088244-78088263 Msa0094740:intron 30.0%
CACAATTGACAAATACTTGA+AGG - chr1_2:78088326-78088345 Msa0094740:intron 30.0%
GAGAAAACATTTGGTTAACT+TGG + chr1_2:78088380-78088399 None:intergenic 30.0%
GGAAATGAGTTCACAAATGT+AGG + chr1_2:78086122-78086141 Msa0094730:intron 35.0%
CTAAAGATGCTACCGAATAA+AGG + chr1_2:78086209-78086228 Msa0094730:CDS 35.0%
CTATAGAGAGATATGAATCG+GGG - chr1_2:78086639-78086658 Msa0094740:CDS 35.0%
TACATAACTAACTTCCTGTG+AGG + chr1_2:78086790-78086809 Msa0094730:intron 35.0%
!! TTCTTGCTTTTGTTTCCACT+TGG + chr1_2:78086814-78086833 Msa0094730:intron 35.0%
TTTACATAGATTTCCCAACC+AGG + chr1_2:78086892-78086911 Msa0094730:intron 35.0%
TTCACAGAATGAAGGTTGAA+TGG - chr1_2:78087120-78087139 Msa0094740:intron 35.0%
TCACAGAATGAAGGTTGAAT+GGG - chr1_2:78087121-78087140 Msa0094740:intron 35.0%
CTGGATGATATATGTGCATT+TGG - chr1_2:78087200-78087219 Msa0094740:intron 35.0%
! AGCAGAAGTCTTTGTTTGTA+GGG - chr1_2:78087223-78087242 Msa0094740:intron 35.0%
AGACTTCTCAAAGTTGGATT+CGG - chr1_2:78087322-78087341 Msa0094740:CDS 35.0%
TCAATGTTGGAAACTACAAG+TGG - chr1_2:78087366-78087385 Msa0094740:CDS 35.0%
! GAGTATTGTTTGAACTCAAC+AGG - chr1_2:78087439-78087458 Msa0094740:CDS 35.0%
CAGATAAAACTGTATCCCAA+AGG - chr1_2:78087512-78087531 Msa0094740:CDS 35.0%
AAACTGTATCCCAAAGGAAA+AGG - chr1_2:78087518-78087537 Msa0094740:CDS 35.0%
!!! TGCATATATTTTGGAACCTG+GGG + chr1_2:78087603-78087622 None:intergenic 35.0%
!!! GTGCATATATTTTGGAACCT+GGG + chr1_2:78087604-78087623 None:intergenic 35.0%
!!! TGTGCATATATTTTGGAACC+TGG + chr1_2:78087605-78087624 None:intergenic 35.0%
! ACTTTGTTGTGAAATTGGTC+AGG - chr1_2:78087692-78087711 Msa0094740:CDS 35.0%
!!! CATTCAGCTGTCATTTTGTA+TGG + chr1_2:78087729-78087748 None:intergenic 35.0%
GTCTACTTGCAGCTAATTAT+TGG - chr1_2:78087840-78087859 Msa0094740:intron 35.0%
TAATTTCACCAGTCAATACC+TGG - chr1_2:78087913-78087932 Msa0094740:intron 35.0%
AATTTCACCAGTCAATACCT+GGG - chr1_2:78087914-78087933 Msa0094740:intron 35.0%
CATTTGCTTTGTAGATGTTG+AGG - chr1_2:78087952-78087971 Msa0094740:CDS 35.0%
TTGTTACACTCATAGATTGC+AGG + chr1_2:78088115-78088134 None:intergenic 35.0%
TACAGCAGTGAGAAAACATT+TGG + chr1_2:78088389-78088408 None:intergenic 35.0%
TAGCTGTAGATGGAATCAAA+AGG - chr1_2:78088468-78088487 Msa0094740:five_prime_UTR 35.0%
GGAAATGAGTTCACAAATGT+AGG + chr1_2:78086122-78086141 Msa0094730:intron 35.0%
CTAAAGATGCTACCGAATAA+AGG + chr1_2:78086209-78086228 Msa0094730:CDS 35.0%
CTATAGAGAGATATGAATCG+GGG - chr1_2:78086639-78086658 Msa0094740:CDS 35.0%
TACATAACTAACTTCCTGTG+AGG + chr1_2:78086790-78086809 Msa0094730:intron 35.0%
!! TTCTTGCTTTTGTTTCCACT+TGG + chr1_2:78086814-78086833 Msa0094730:intron 35.0%
TTTACATAGATTTCCCAACC+AGG + chr1_2:78086892-78086911 Msa0094730:intron 35.0%
TTCACAGAATGAAGGTTGAA+TGG - chr1_2:78087120-78087139 Msa0094740:intron 35.0%
TCACAGAATGAAGGTTGAAT+GGG - chr1_2:78087121-78087140 Msa0094740:intron 35.0%
CTGGATGATATATGTGCATT+TGG - chr1_2:78087200-78087219 Msa0094740:intron 35.0%
! AGCAGAAGTCTTTGTTTGTA+GGG - chr1_2:78087223-78087242 Msa0094740:intron 35.0%
AGACTTCTCAAAGTTGGATT+CGG - chr1_2:78087322-78087341 Msa0094740:CDS 35.0%
TCAATGTTGGAAACTACAAG+TGG - chr1_2:78087366-78087385 Msa0094740:CDS 35.0%
! GAGTATTGTTTGAACTCAAC+AGG - chr1_2:78087439-78087458 Msa0094740:CDS 35.0%
CAGATAAAACTGTATCCCAA+AGG - chr1_2:78087512-78087531 Msa0094740:CDS 35.0%
AAACTGTATCCCAAAGGAAA+AGG - chr1_2:78087518-78087537 Msa0094740:CDS 35.0%
!!! TGCATATATTTTGGAACCTG+GGG + chr1_2:78087603-78087622 None:intergenic 35.0%
!!! GTGCATATATTTTGGAACCT+GGG + chr1_2:78087604-78087623 None:intergenic 35.0%
!!! TGTGCATATATTTTGGAACC+TGG + chr1_2:78087605-78087624 None:intergenic 35.0%
! ACTTTGTTGTGAAATTGGTC+AGG - chr1_2:78087692-78087711 Msa0094740:CDS 35.0%
!!! CATTCAGCTGTCATTTTGTA+TGG + chr1_2:78087729-78087748 None:intergenic 35.0%
GTCTACTTGCAGCTAATTAT+TGG - chr1_2:78087840-78087859 Msa0094740:intron 35.0%
TAATTTCACCAGTCAATACC+TGG - chr1_2:78087913-78087932 Msa0094740:intron 35.0%
AATTTCACCAGTCAATACCT+GGG - chr1_2:78087914-78087933 Msa0094740:intron 35.0%
CATTTGCTTTGTAGATGTTG+AGG - chr1_2:78087952-78087971 Msa0094740:CDS 35.0%
TTGTTACACTCATAGATTGC+AGG + chr1_2:78088115-78088134 None:intergenic 35.0%
TACAGCAGTGAGAAAACATT+TGG + chr1_2:78088389-78088408 None:intergenic 35.0%
TAGCTGTAGATGGAATCAAA+AGG - chr1_2:78088468-78088487 Msa0094740:five_prime_UTR 35.0%
GTTCCTCTCTCTCCTTTATT+CGG - chr1_2:78086194-78086213 Msa0094740:three_prime_UTR 40.0%
TTGTTCCCCAAAAATCCCAT+TGG + chr1_2:78086300-78086319 Msa0094730:three_prime_UTR 40.0%
! GTAAAGTACCTTGGAGAACT+AGG + chr1_2:78086954-78086973 Msa0094730:intron 40.0%
CACAGAATGAAGGTTGAATG+GGG - chr1_2:78087122-78087141 Msa0094740:intron 40.0%
TCCTCTCAAGGATTTCAATC+TGG - chr1_2:78087160-78087179 Msa0094740:intron 40.0%
CCTCTCAAGGATTTCAATCT+GGG - chr1_2:78087161-78087180 Msa0094740:intron 40.0%
! GATTTCAATCTGGGCTCTAA+AGG - chr1_2:78087170-78087189 Msa0094740:intron 40.0%
! GAGCAGAAGTCTTTGTTTGT+AGG - chr1_2:78087222-78087241 Msa0094740:intron 40.0%
GTTTGTAGGGAAAACTACAC+AGG - chr1_2:78087236-78087255 Msa0094740:intron 40.0%
AGGGAAAACTACACAGGTAA+AGG - chr1_2:78087242-78087261 Msa0094740:intron 40.0%
ATCTCCCATACATGCTTGTA+GGG + chr1_2:78087299-78087318 None:intergenic 40.0%
AATCTCCCATACATGCTTGT+AGG + chr1_2:78087300-78087319 None:intergenic 40.0%
GACTCTAAGCCATTCAATGT+TGG - chr1_2:78087353-78087372 Msa0094740:CDS 40.0%
!! CTGTTGGGTTAGCTAAAGTT+AGG + chr1_2:78087574-78087593 None:intergenic 40.0%
!!! CATATATTTTGGAACCTGGG+GGG + chr1_2:78087601-78087620 None:intergenic 40.0%
!!! GCATATATTTTGGAACCTGG+GGG + chr1_2:78087602-78087621 None:intergenic 40.0%
! AGCAATCCAAGCATCAGTTT+TGG - chr1_2:78087651-78087670 Msa0094740:intron 40.0%
!!! TCCAAGCATCAGTTTTGGAA+AGG - chr1_2:78087656-78087675 Msa0094740:intron 40.0%
ACCTTTCCAAAACTGATGCT+TGG + chr1_2:78087660-78087679 None:intergenic 40.0%
ATTTCACCAGTCAATACCTG+GGG - chr1_2:78087915-78087934 Msa0094740:intron 40.0%
GATGTTGAGGTTACAGTTCT+TGG - chr1_2:78087965-78087984 Msa0094740:CDS 40.0%
CATAGATTGCAGGATTGACA+AGG + chr1_2:78088105-78088124 None:intergenic 40.0%
AAACTTACAAGGAGGAGGAT+GGG + chr1_2:78088427-78088446 None:intergenic 40.0%
CATCTACCAAACTTACAAGG+AGG + chr1_2:78088435-78088454 None:intergenic 40.0%
CTCCTTGTAAGTTTGGTAGA+TGG - chr1_2:78088433-78088452 Msa0094740:intron 40.0%
CTCCATCTACCAAACTTACA+AGG + chr1_2:78088438-78088457 None:intergenic 40.0%
CTTGTAAGTTTGGTAGATGG+AGG - chr1_2:78088436-78088455 Msa0094740:intron 40.0%
! GTCATAAGACTAGCTGTAGA+TGG - chr1_2:78088458-78088477 Msa0094740:exon 40.0%
GTTCCTCTCTCTCCTTTATT+CGG - chr1_2:78086194-78086213 Msa0094740:three_prime_UTR 40.0%
TTGTTCCCCAAAAATCCCAT+TGG + chr1_2:78086300-78086319 Msa0094730:three_prime_UTR 40.0%
! GTAAAGTACCTTGGAGAACT+AGG + chr1_2:78086954-78086973 Msa0094730:intron 40.0%
CACAGAATGAAGGTTGAATG+GGG - chr1_2:78087122-78087141 Msa0094740:intron 40.0%
TCCTCTCAAGGATTTCAATC+TGG - chr1_2:78087160-78087179 Msa0094740:intron 40.0%
CCTCTCAAGGATTTCAATCT+GGG - chr1_2:78087161-78087180 Msa0094740:intron 40.0%
! GATTTCAATCTGGGCTCTAA+AGG - chr1_2:78087170-78087189 Msa0094740:intron 40.0%
! GAGCAGAAGTCTTTGTTTGT+AGG - chr1_2:78087222-78087241 Msa0094740:intron 40.0%
GTTTGTAGGGAAAACTACAC+AGG - chr1_2:78087236-78087255 Msa0094740:intron 40.0%
AGGGAAAACTACACAGGTAA+AGG - chr1_2:78087242-78087261 Msa0094740:intron 40.0%
ATCTCCCATACATGCTTGTA+GGG + chr1_2:78087299-78087318 None:intergenic 40.0%
AATCTCCCATACATGCTTGT+AGG + chr1_2:78087300-78087319 None:intergenic 40.0%
GACTCTAAGCCATTCAATGT+TGG - chr1_2:78087353-78087372 Msa0094740:CDS 40.0%
!! CTGTTGGGTTAGCTAAAGTT+AGG + chr1_2:78087574-78087593 None:intergenic 40.0%
!!! CATATATTTTGGAACCTGGG+GGG + chr1_2:78087601-78087620 None:intergenic 40.0%
!!! GCATATATTTTGGAACCTGG+GGG + chr1_2:78087602-78087621 None:intergenic 40.0%
! AGCAATCCAAGCATCAGTTT+TGG - chr1_2:78087651-78087670 Msa0094740:intron 40.0%
!!! TCCAAGCATCAGTTTTGGAA+AGG - chr1_2:78087656-78087675 Msa0094740:intron 40.0%
ACCTTTCCAAAACTGATGCT+TGG + chr1_2:78087660-78087679 None:intergenic 40.0%
ATTTCACCAGTCAATACCTG+GGG - chr1_2:78087915-78087934 Msa0094740:intron 40.0%
GATGTTGAGGTTACAGTTCT+TGG - chr1_2:78087965-78087984 Msa0094740:CDS 40.0%
CATAGATTGCAGGATTGACA+AGG + chr1_2:78088105-78088124 None:intergenic 40.0%
AAACTTACAAGGAGGAGGAT+GGG + chr1_2:78088427-78088446 None:intergenic 40.0%
CATCTACCAAACTTACAAGG+AGG + chr1_2:78088435-78088454 None:intergenic 40.0%
CTCCTTGTAAGTTTGGTAGA+TGG - chr1_2:78088433-78088452 Msa0094740:intron 40.0%
CTCCATCTACCAAACTTACA+AGG + chr1_2:78088438-78088457 None:intergenic 40.0%
CTTGTAAGTTTGGTAGATGG+AGG - chr1_2:78088436-78088455 Msa0094740:intron 40.0%
! GTCATAAGACTAGCTGTAGA+TGG - chr1_2:78088458-78088477 Msa0094740:exon 40.0%
GCCATGGATACCAAAGATGA+CGG - chr1_2:78086168-78086187 Msa0094740:three_prime_UTR 45.0%
ACCGTCATCTTTGGTATCCA+TGG + chr1_2:78086172-78086191 Msa0094730:CDS 45.0%
GAGGAACAAACCGTCATCTT+TGG + chr1_2:78086181-78086200 Msa0094730:CDS 45.0%
CTACCGAATAAAGGAGAGAG+AGG + chr1_2:78086200-78086219 Msa0094730:CDS 45.0%
! ATTTGTTTGAGTAGGGCGTC+TGG + chr1_2:78086477-78086496 Msa0094730:three_prime_UTR 45.0%
ACGCCCTACTCAAACAAATC+TGG - chr1_2:78086478-78086497 Msa0094740:three_prime_UTR 45.0%
GAATCAAGCTCACTTCATCC+TGG - chr1_2:78086871-78086890 Msa0094740:intron 45.0%
AAGCTCACTTCATCCTGGTT+GGG - chr1_2:78086876-78086895 Msa0094740:intron 45.0%
! GACAACTACCTAGTTCTCCA+AGG - chr1_2:78086943-78086962 Msa0094740:intron 45.0%
CCCAGATTGAAATCCTTGAG+AGG + chr1_2:78087164-78087183 None:intergenic 45.0%
!! GGGCTCTAAAGGTTATCTAC+TGG - chr1_2:78087181-78087200 Msa0094740:intron 45.0%
TCTCCCATACATGCTTGTAG+GGG + chr1_2:78087298-78087317 None:intergenic 45.0%
! GAGTCGGTACCTTTTCCTTT+GGG + chr1_2:78087530-78087549 None:intergenic 45.0%
!! CAAAGGAAAAGGTACCGACT+CGG - chr1_2:78087529-78087548 Msa0094740:intron 45.0%
!! AAAGGAAAAGGTACCGACTC+GGG - chr1_2:78087530-78087549 Msa0094740:intron 45.0%
AGTGCCTCAAGTCATGAACA+TGG - chr1_2:78087866-78087885 Msa0094740:intron 45.0%
TGTGCCATGTTCATGACTTG+AGG + chr1_2:78087873-78087892 None:intergenic 45.0%
!! TAGATACCCCAGGTATTGAC+TGG + chr1_2:78087924-78087943 None:intergenic 45.0%
! ATACCTGGGGTATCTAGTGA+AGG - chr1_2:78087928-78087947 Msa0094740:intron 45.0%
TGAGGTTACAGTTCTTGGAG+TGG - chr1_2:78087970-78087989 Msa0094740:CDS 45.0%
!! TGTTAAGAGTAGCGGACTAG+CGG + chr1_2:78088165-78088184 None:intergenic 45.0%
CAAACTTACAAGGAGGAGGA+TGG + chr1_2:78088428-78088447 None:intergenic 45.0%
CATCCTCCTCCTTGTAAGTT+TGG - chr1_2:78088426-78088445 Msa0094740:intron 45.0%
CTACCAAACTTACAAGGAGG+AGG + chr1_2:78088432-78088451 None:intergenic 45.0%
GCCATGGATACCAAAGATGA+CGG - chr1_2:78086168-78086187 Msa0094740:three_prime_UTR 45.0%
ACCGTCATCTTTGGTATCCA+TGG + chr1_2:78086172-78086191 Msa0094730:CDS 45.0%
GAGGAACAAACCGTCATCTT+TGG + chr1_2:78086181-78086200 Msa0094730:CDS 45.0%
CTACCGAATAAAGGAGAGAG+AGG + chr1_2:78086200-78086219 Msa0094730:CDS 45.0%
! ATTTGTTTGAGTAGGGCGTC+TGG + chr1_2:78086477-78086496 Msa0094730:three_prime_UTR 45.0%
ACGCCCTACTCAAACAAATC+TGG - chr1_2:78086478-78086497 Msa0094740:three_prime_UTR 45.0%
GAATCAAGCTCACTTCATCC+TGG - chr1_2:78086871-78086890 Msa0094740:intron 45.0%
AAGCTCACTTCATCCTGGTT+GGG - chr1_2:78086876-78086895 Msa0094740:intron 45.0%
! GACAACTACCTAGTTCTCCA+AGG - chr1_2:78086943-78086962 Msa0094740:intron 45.0%
CCCAGATTGAAATCCTTGAG+AGG + chr1_2:78087164-78087183 None:intergenic 45.0%
!! GGGCTCTAAAGGTTATCTAC+TGG - chr1_2:78087181-78087200 Msa0094740:intron 45.0%
TCTCCCATACATGCTTGTAG+GGG + chr1_2:78087298-78087317 None:intergenic 45.0%
! GAGTCGGTACCTTTTCCTTT+GGG + chr1_2:78087530-78087549 None:intergenic 45.0%
!! CAAAGGAAAAGGTACCGACT+CGG - chr1_2:78087529-78087548 Msa0094740:intron 45.0%
!! AAAGGAAAAGGTACCGACTC+GGG - chr1_2:78087530-78087549 Msa0094740:intron 45.0%
AGTGCCTCAAGTCATGAACA+TGG - chr1_2:78087866-78087885 Msa0094740:intron 45.0%
TGTGCCATGTTCATGACTTG+AGG + chr1_2:78087873-78087892 None:intergenic 45.0%
!! TAGATACCCCAGGTATTGAC+TGG + chr1_2:78087924-78087943 None:intergenic 45.0%
! ATACCTGGGGTATCTAGTGA+AGG - chr1_2:78087928-78087947 Msa0094740:intron 45.0%
TGAGGTTACAGTTCTTGGAG+TGG - chr1_2:78087970-78087989 Msa0094740:CDS 45.0%
!! TGTTAAGAGTAGCGGACTAG+CGG + chr1_2:78088165-78088184 None:intergenic 45.0%
CAAACTTACAAGGAGGAGGA+TGG + chr1_2:78088428-78088447 None:intergenic 45.0%
CATCCTCCTCCTTGTAAGTT+TGG - chr1_2:78088426-78088445 Msa0094740:intron 45.0%
CTACCAAACTTACAAGGAGG+AGG + chr1_2:78088432-78088451 None:intergenic 45.0%
!! TGAATATATATTAAAAAAAA+AGG + chr1_2:78086976-78086995 Msa0094730:three_prime_UTR 5.0%
!! TGAATATATATTAAAAAAAA+AGG + chr1_2:78086976-78086995 Msa0094730:three_prime_UTR 5.0%
! GAATCGGGGAAGTTTGAAGC+TGG - chr1_2:78086653-78086672 Msa0094740:CDS 50.0%
TTGAAGCTGGAGGCCACAAA+TGG - chr1_2:78086666-78086685 Msa0094740:CDS 50.0%
CAAGCTCACTTCATCCTGGT+TGG - chr1_2:78086875-78086894 Msa0094740:intron 50.0%
CCATACATGCTTGTAGGGGA+GGG + chr1_2:78087294-78087313 None:intergenic 50.0%
CCTCCCCTACAAGCATGTAT+GGG - chr1_2:78087292-78087311 Msa0094740:CDS 50.0%
! CGAGTCGGTACCTTTTCCTT+TGG + chr1_2:78087531-78087550 None:intergenic 50.0%
AGCAAGATATCTGCCCGAGT+CGG + chr1_2:78087546-78087565 None:intergenic 50.0%
TGTCCTTCACTAGATACCCC+AGG + chr1_2:78087934-78087953 None:intergenic 50.0%
! GAATCGGGGAAGTTTGAAGC+TGG - chr1_2:78086653-78086672 Msa0094740:CDS 50.0%
TTGAAGCTGGAGGCCACAAA+TGG - chr1_2:78086666-78086685 Msa0094740:CDS 50.0%
CAAGCTCACTTCATCCTGGT+TGG - chr1_2:78086875-78086894 Msa0094740:intron 50.0%
CCATACATGCTTGTAGGGGA+GGG + chr1_2:78087294-78087313 None:intergenic 50.0%
CCTCCCCTACAAGCATGTAT+GGG - chr1_2:78087292-78087311 Msa0094740:CDS 50.0%
! CGAGTCGGTACCTTTTCCTT+TGG + chr1_2:78087531-78087550 None:intergenic 50.0%
AGCAAGATATCTGCCCGAGT+CGG + chr1_2:78087546-78087565 None:intergenic 50.0%
TGTCCTTCACTAGATACCCC+AGG + chr1_2:78087934-78087953 None:intergenic 50.0%
! TCGGGGAAGTTTGAAGCTGG+AGG - chr1_2:78086656-78086675 Msa0094740:CDS 55.0%
CCCTCCCCTACAAGCATGTA+TGG - chr1_2:78087291-78087310 Msa0094740:CDS 55.0%
CCCATACATGCTTGTAGGGG+AGG + chr1_2:78087295-78087314 None:intergenic 55.0%
! AACCTGGGGGGATTGCTGTT+GGG + chr1_2:78087589-78087608 None:intergenic 55.0%
! TCGGGGAAGTTTGAAGCTGG+AGG - chr1_2:78086656-78086675 Msa0094740:CDS 55.0%
CCCTCCCCTACAAGCATGTA+TGG - chr1_2:78087291-78087310 Msa0094740:CDS 55.0%
CCCATACATGCTTGTAGGGG+AGG + chr1_2:78087295-78087314 None:intergenic 55.0%
! AACCTGGGGGGATTGCTGTT+GGG + chr1_2:78087589-78087608 None:intergenic 55.0%
AACCCAACAGCAATCCCCCC+AGG - chr1_2:78087584-78087603 Msa0094740:intron 60.0%
GAACCTGGGGGGATTGCTGT+TGG + chr1_2:78087590-78087609 None:intergenic 60.0%
!! GAGTAGCGGACTAGCGGACT+TGG + chr1_2:78088159-78088178 None:intergenic 60.0%
AACCCAACAGCAATCCCCCC+AGG - chr1_2:78087584-78087603 Msa0094740:intron 60.0%
GAACCTGGGGGGATTGCTGT+TGG + chr1_2:78087590-78087609 None:intergenic 60.0%
!! GAGTAGCGGACTAGCGGACT+TGG + chr1_2:78088159-78088178 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 78086114 78088519 78086114 ID=Msa0094740;Name=Msa0094740
chr1_2 mRNA 78086114 78088519 78086114 ID=Msa0094740-mRNA-1;Parent=Msa0094740;Name=Msa0094740-mRNA-1;_AED=0.11;_eAED=0.11;_QI=57|1|1|1|1|1|6|510|311
chr1_2 exon 78086114 78086781 78086114 ID=Msa0094740-mRNA-1:exon:27788;Parent=Msa0094740-mRNA-1
chr1_2 exon 78086956 78087122 78086956 ID=Msa0094740-mRNA-1:exon:27787;Parent=Msa0094740-mRNA-1
chr1_2 exon 78087246 78087537 78087246 ID=Msa0094740-mRNA-1:exon:27786;Parent=Msa0094740-mRNA-1
chr1_2 exon 78087669 78087838 78087669 ID=Msa0094740-mRNA-1:exon:27785;Parent=Msa0094740-mRNA-1
chr1_2 exon 78087946 78088075 78087946 ID=Msa0094740-mRNA-1:exon:27784;Parent=Msa0094740-mRNA-1
chr1_2 exon 78088444 78088519 78088444 ID=Msa0094740-mRNA-1:exon:27783;Parent=Msa0094740-mRNA-1
chr1_2 five_prime_UTR 78088463 78088519 78088463 ID=Msa0094740-mRNA-1:five_prime_utr;Parent=Msa0094740-mRNA-1
chr1_2 CDS 78088444 78088462 78088444 ID=Msa0094740-mRNA-1:cds;Parent=Msa0094740-mRNA-1
chr1_2 CDS 78087946 78088075 78087946 ID=Msa0094740-mRNA-1:cds;Parent=Msa0094740-mRNA-1
chr1_2 CDS 78087669 78087838 78087669 ID=Msa0094740-mRNA-1:cds;Parent=Msa0094740-mRNA-1
chr1_2 CDS 78087246 78087537 78087246 ID=Msa0094740-mRNA-1:cds;Parent=Msa0094740-mRNA-1
chr1_2 CDS 78086956 78087122 78086956 ID=Msa0094740-mRNA-1:cds;Parent=Msa0094740-mRNA-1
chr1_2 CDS 78086624 78086781 78086624 ID=Msa0094740-mRNA-1:cds;Parent=Msa0094740-mRNA-1
chr1_2 three_prime_UTR 78086114 78086623 78086114 ID=Msa0094740-mRNA-1:three_prime_utr;Parent=Msa0094740-mRNA-1
Gene Sequence

>Msa0094740

ATGGATACCAAAGATGACGGTATTTCTAGATCTATAGTAGAAGCTTCGCCAGTTCATTACATAATGAAAATACAATCATTTTCACTCCTCACTACTAATTCTATAGAGAGATATGAATCGGGGAAGTTTGAAGCTGGAGGCCACAAATGGAAGTTAGTTATGTATCCAAGTGGAAACAAAAGCAAGAATGTAAAGGATCATATTTCACTATACTTGGCATTGGAAGAATCAAGCTCACTTCATCCTGGTTGGGAAATCTATGTAAATTTTAAATTGTTTTTATATGATCACAACAATGACAACTACCTAGTTCTCCAAGATGATGTGAAAAAGGAAAAAAGATTTCACAGAATGAAGGTTGAATGGGGATTTGATCAATTTATTCCTCTCAAGGATTTCAATCTGGGCTCTAAAGGTTATCTACTGGATGATATATGTGCATTTGGAGCAGAAGTCTTTGTTTGTAGGGAAAACTACACAGGTAAAGGAGAATCTTTGATCATGATGAAGGATGCCCTCCCCTACAAGCATGTATGGGAGATTAAAGACTTCTCAAAGTTGGATTCGGAGTGTTGTGACTCTAAGCCATTCAATGTTGGAAACTACAAGTGGCAGATAAAACTGTATCCCAAAGGAAAAGGTACCGACTCGGGCAGATATCTTGCTCTGTACCTAACTTTAGCTAACCCAACAGCAATCCCCCCAGGTTCCAAAATATATGCACAGACAATATTACGCATACTTGATCAAAAGCAATCCAAGCATCAGTTTTGGAAAGCTAATTATTGGTTTAGTGCCTCAAGTCATGAACATGGCACATCCAGATTTATTTTGTGCAGTAATTTCACCAGTCAATACCTGGGGTATCTAGTGAAGGACATTTGCTTTGTAGATGTTGAGGTTACAGTTCTTGGAGTGGTTGATGCATCGTCTTGA
Protein sequence

>Msa0094740

MDTKDDGISRSIVEASPVHYIMKIQSFSLLTTNSIERYESGKFEAGGHKWKLVMYPSGNKSKNVKDHISLYLALEESSSLHPGWEIYVNFKLFLYDHNNDNYLVLQDDVKKEKRFHRMKVEWGFDQFIPLKDFNLGSKGYLLDDICAFGAEVFVCRENYTGKGESLIMMKDALPYKHVWEIKDFSKLDSECCDSKPFNVGNYKWQIKLYPKGKGTDSGRYLALYLTLANPTAIPPGSKIYAQTILRILDQKQSKHQFWKANYWFSASSHEHGTSRFILCSNFTSQYLGYLVKDICFVDVEVTVLGVVDASS*