AlfalfaGEDB | Msa0415610

M. sativa cultivar zhongmu-4 / Msa0415610

KEGG: K00695
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008194 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0030312 GO:0033036 GO:0033037 GO:0035251 GO:0044464 GO:0046527 GO:0051179 GO:0052545 GO:0071944 GO:0080165
PFAM: PF00862.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0415610	XP_003600643.1	98.575	842	12	0	1	842	1	842	0.0	1733

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0415610	sp\|Q9FX32\|SUS6_ARATH	69.902	814	242	1	2	815	4	814	0.0	1221

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0415610	G7J800	98.575	842	12	0	1	842	1	842	0.0	1733

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004630	Msa0415610	0.800488	1.407690e-48	-8.615850e-47
Msa0015150	Msa0415610	0.830145	3.462935e-55	-8.615850e-47
Msa0029970	Msa0415610	0.805092	1.577597e-49	-8.615850e-47
Msa0034210	Msa0415610	0.804262	2.350391e-49	-8.615850e-47
Msa0064120	Msa0415610	0.805754	1.145603e-49	-8.615850e-47
Msa0071850	Msa0415610	0.822232	2.645035e-53	-8.615850e-47
Msa0071860	Msa0415610	0.827315	1.674678e-54	-8.615850e-47
Msa0077340	Msa0415610	0.804230	2.387328e-49	-8.615850e-47
Msa0081520	Msa0415610	0.813092	3.049647e-51	-8.615850e-47
Msa0094740	Msa0415610	0.814425	1.550670e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0415610	MtrunA17_Chr3g0109841	98.575	842	12	0	1	842	1	842	0.0	1733
Msa0415610	MtrunA17_Chr5g0433761	82.122	839	144	3	1	838	1	834	0.0	1453
Msa0415610	MtrunA17_Chr6g0481131	70.711	816	239	0	19	834	18	833	0.0	1235
Msa0415610	MtrunA17_Chr6g0481171	72.624	705	189	1	134	834	5	709	0.0	1082
Msa0415610	MtrunA17_Chr1g0195241	58.161	772	322	1	37	808	16	786	0.0	941
Msa0415610	MtrunA17_Chr7g0269581	55.283	814	357	3	1	814	1	807	0.0	935
Msa0415610	MtrunA17_Chr2g0301621	54.557	812	358	7	5	814	2	804	0.0	931
Msa0415610	MtrunA17_Chr4g0070011	55.838	788	342	4	27	813	23	805	0.0	927
Msa0415610	MtrunA17_Chr6g0481241	64.130	184	44	1	639	822	1	162	1.43e-75	245
Msa0415610	MtrunA17_Chr6g0481261	83.333	102	17	0	639	740	1	102	7.79e-56	187

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0415610	AT1G73370.3	69.902	814	242	1	2	815	4	814	1221
Msa0415610	AT1G73370.1	69.902	814	242	1	2	815	4	814	1221
Msa0415610	AT5G37180.1	71.033	794	225	2	21	813	13	802	1202
Msa0415610	AT1G73370.2	71.429	770	220	0	46	815	1	770	1180
Msa0415610	AT5G37180.2	74.919	614	154	0	200	813	1	614	993
Msa0415610	AT4G02280.1	57.377	793	337	1	22	814	18	809	971
Msa0415610	AT5G49190.1	55.233	793	354	1	22	814	15	806	929
Msa0415610	AT5G49190.2	55.769	780	344	1	35	814	18	796	924
Msa0415610	AT3G43190.2	56.314	776	331	5	41	814	39	808	917
Msa0415610	AT3G43190.1	56.314	776	331	5	41	814	39	808	917

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Find 178 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTATAATCTTCTCAA+TGG	0.494217	3_2:-61913246	Msa0415610:CDS
AAACAACTCTGCATAGTCCT+GGG	0.585010	3_2:+61913541	None:intergenic
AAACATACCACAAGAATTTG+AGG	0.450197	3_2:+61914595	None:intergenic
AAATTACACTGATGGGAATT+TGG	0.244255	3_2:-61914112	Msa0415610:CDS
AACCAAATGCAATCAGGAAT+TGG	0.378445	3_2:-61914450	Msa0415610:CDS
AACCGATTACCTCAAATTCA+AGG	0.481703	3_2:-61916054	Msa0415610:CDS
AACTAAGATTCTCAACCTCA+TGG	0.538311	3_2:-61914160	Msa0415610:CDS
AAGATTCTCAACCTCATGGA+AGG	0.580091	3_2:-61914156	Msa0415610:CDS
AAGCTTTGCAACTGAGCTCA+GGG	0.590368	3_2:+61915464	None:intergenic
AAGGCCAGACCCTGGAGTTT+GGG	0.391013	3_2:-61916126	Msa0415610:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATGATTTGATGGAAGAAA+TGG	-	chr3_2:61912147-61912166	Msa0415610:intron	30.0%
AGAAATGGAGCAAGTTATAA+AGG	-	chr3_2:61912162-61912181	Msa0415610:intron	30.0%
TTATAAAGGACCAGAATGAT+AGG	-	chr3_2:61912176-61912195	Msa0415610:intron	30.0%
GATAGGAATCAAATATTGGA+AGG	-	chr3_2:61912193-61912212	Msa0415610:intron	30.0%
TAACTTGGGTTTATGTTGTA+GGG	-	chr3_2:61912897-61912916	Msa0415610:CDS	30.0%
GATAACAAGTAGTCCAATAT+AGG	+	chr3_2:61913072-61913091	None:intergenic	30.0%
CTTGGTTCAAAATCATCATA+GGG	+	chr3_2:61913424-61913443	None:intergenic	30.0%
AAAAACTTCTCCATGTTCAT+TGG	+	chr3_2:61913622-61913641	None:intergenic	30.0%
GATCACAACATTGAATATTG+TGG	+	chr3_2:61913656-61913675	None:intergenic	30.0%
TTGGATGCATTCACTTAAAA+GGG	+	chr3_2:61913962-61913981	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	61911975	61916855	61911975	ID=Msa0415610;Name=Msa0415610
chr3_2	mRNA	61911975	61916855	61911975	ID=Msa0415610-mRNA-1;Parent=Msa0415610;Name=Msa0415610-mRNA-1;_AED=0.08;_eAED=0.08;_QI=29\|1\|1\|1\|1\|1\|14\|142\|842
chr3_2	exon	61911975	61912144	61911975	ID=Msa0415610-mRNA-1:exon:13214;Parent=Msa0415610-mRNA-1
chr3_2	exon	61912318	61912406	61912318	ID=Msa0415610-mRNA-1:exon:13213;Parent=Msa0415610-mRNA-1
chr3_2	exon	61912481	61912619	61912481	ID=Msa0415610-mRNA-1:exon:13212;Parent=Msa0415610-mRNA-1
chr3_2	exon	61912723	61913289	61912723	ID=Msa0415610-mRNA-1:exon:13211;Parent=Msa0415610-mRNA-1
chr3_2	exon	61913384	61913608	61913384	ID=Msa0415610-mRNA-1:exon:13210;Parent=Msa0415610-mRNA-1
chr3_2	exon	61913766	61913932	61913766	ID=Msa0415610-mRNA-1:exon:13209;Parent=Msa0415610-mRNA-1
chr3_2	exon	61914074	61914190	61914074	ID=Msa0415610-mRNA-1:exon:13208;Parent=Msa0415610-mRNA-1
chr3_2	exon	61914328	61914501	61914328	ID=Msa0415610-mRNA-1:exon:13207;Parent=Msa0415610-mRNA-1
chr3_2	exon	61914603	61914698	61914603	ID=Msa0415610-mRNA-1:exon:13206;Parent=Msa0415610-mRNA-1
chr3_2	exon	61915092	61915308	61915092	ID=Msa0415610-mRNA-1:exon:13205;Parent=Msa0415610-mRNA-1
chr3_2	exon	61915387	61915505	61915387	ID=Msa0415610-mRNA-1:exon:13204;Parent=Msa0415610-mRNA-1
chr3_2	exon	61915720	61915912	61915720	ID=Msa0415610-mRNA-1:exon:13203;Parent=Msa0415610-mRNA-1
chr3_2	exon	61916032	61916186	61916032	ID=Msa0415610-mRNA-1:exon:13202;Parent=Msa0415610-mRNA-1
chr3_2	exon	61916584	61916855	61916584	ID=Msa0415610-mRNA-1:exon:13201;Parent=Msa0415610-mRNA-1
chr3_2	five_prime_UTR	61916827	61916855	61916827	ID=Msa0415610-mRNA-1:five_prime_utr;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61916584	61916826	61916584	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61916032	61916186	61916032	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61915720	61915912	61915720	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61915387	61915505	61915387	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61915092	61915308	61915092	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61914603	61914698	61914603	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61914328	61914501	61914328	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61914074	61914190	61914074	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61913766	61913932	61913766	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61913384	61913608	61913384	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61912723	61913289	61912723	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61912481	61912619	61912481	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61912318	61912406	61912318	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	CDS	61912117	61912144	61912117	ID=Msa0415610-mRNA-1:cds;Parent=Msa0415610-mRNA-1
chr3_2	three_prime_UTR	61911975	61912116	61911975	ID=Msa0415610-mRNA-1:three_prime_utr;Parent=Msa0415610-mRNA-1

Gene Sequence

>Msa0415610

ATGGCTTCTGCATCAGGGTTGAAGCGCACAGATTCATTAACAGATAACAATATGTCATCACCAGATGCAACGAAGCAGAGTAGGTACCATATGAAGGGGTGTTTTGCCAAGTACCTTGAGAAAGGTAGAAGGATCATAAAAGTTCATGATTTGATGGAAGAAATGGAGCAAGTTATAAAGGACCAGAATGATAGGAATCAAATATTGGAAGGCAATCTTGGCTTCTTATTAAGTTTTACACAGGAAGCTATTGTTGATCCACCATATGTTGCCTTTGCAGTAAGGCCAGACCCTGGAGTTTGGGAATATGTAAAAGTGAGCTCTGAGAATCTTTCAGTTGAACCTATAACATCAACCGATTACCTCAAATTCAAGGAAAGAATATACGACCAAAAATGGGCAAACGATGAAAATGCACTTGAAGCAGATTTTGGAGCATTTGACTTTCCTATTCCTAACTTAAAATTGCCTTCTTCAATTGGAAATGGACTCCATTTTGTTTCAAAGTTCTTAACTTTACGTTTTAGTGGGAAATTGGCAAAGACACAACCTATATTGGACTACTTGTTATCACTAAATCATCAAGGAGAAAGTCTAATGATAAATGATACCCTGAGCTCAGTTGCAAAGCTTCAGATGGCACTAACAGTGGCTGATGCATTCCTTTCAGCACTTCCAGTGGATACTCCCTATGATGATTTTGAACCAAGGTTTAAGCAGTGGGGTTTTGAAAGTGGATGGGGAGATACTGCAGGAAGAGTGAAGGATACAATGAGAACTTTGTCAGAAGTACTCCAAGCTCCAGATCCAATGAACATGGAGAAGTTTTTCAGTAGAGTTCCCACAATATTCAATGTTGTGATCTTCTCTATTCATGGTTATTTTGGTCAAGCAGATGTTCTTGGCTTGCCAGATACCGGCGGACAGGTAGTTTACATATTGGATCAAGTGAGAGCTTTGGAAGCAGAAATGCTACTTAGAATTAAGCAACAAGGCTTAAAAGTGAATCCTCAAATTCTTGTGGTCACAAGGCTCATACCTGATGCTCAAGGAACCAAATGCAATCAGGAATTGGAACCAATCCTTGACACCAAGCACTCAAAAATTCTACGCGTGCCTTTTCAGACGGATAAAGGAATCCTGCGTCAATGGGTTTCTCGCTTCGACATCTATCCTTATCTTGAGAGGTTTACTCAGGATGCCACAACTAAGATTCTCAACCTCATGGAAGGAAAACCAGATCTCATTATAGGAAATTACACTGATGGGAATTTGGCAGCTTCTCTTATGGCTAGCAAACTTAGGATAACTCAGGGAACAATAGCACATGCTTTAGAGAAGACTAAGTATGAAGATTCAGATGTCAAGTGGAAAGAATTAGACCCTAAGTATCACTTCTCATGTCAATTCATGGCTGATACAATTGCAATGAATGCATCAGATTTCATCATAACTAGCACATATCAGGAAATTGCTGGAAGCAAAGATAAACCTGGACAATATGAAAGTCATGCAGCATTTACACTCCCAGGACTATGCAGAGTTGTTTCAGGGATAAATATATTTGATCCGAAGTTCAACATAGCTGCACCTGGAGCTGACCAAACTGTCTATTTTCCTTACACTGAGAAAGACAAAAGACTCATTCAATTCCATCCTACAATTGAAGATTTATTATACAGTAAAGTTGATAACAAGGATCATATTGGATATCTAGAAAACAGAAGAAAACCTATAATCTTCTCAATGGCAAGGCTTGATGTTGTGAAGAACATAACCGGTTTAGTCGAATGGTATGGCAAGAACAAAAGGTTGAGAAGCTTGGTGAACCTTGTCATAGTTGGAGGCTTCTTTGATCCTTTGAAATCAAAAGACAGAGAAGAGATGGCAGAAATAAGGAAAATGCATGATTTAATTGAAAAGTATCAATTGAAGGGTCAGTTTAGATGGATTGTTGCACAGACCGATAGACATCGCAATGGAGAGCTTTATCGATTTATTGCCGACACAAAGGGAGCTTTTGTGCAGCCTGCTTTGTATGAAGCATTTGGTCTAACTGTCATTGAAGCAATGAACTGTGGTTTGCCAACTTTTGCTACTAACCATGGTGGTCCAGCGGAAATTACTGTTGATGGTGTTTCTGGTTTCCATATCGATCCTCTCAATGGAGACGAATCAAGTAACAAAATTGCTGATTTCTTTGAAAAATGTAAAGTGGATTCGACACATTGGAACATGATTTCAGCGGCAGGATTGCAGCGTATTAATGAATGTTATACATGGAAGATTTATGCAAACAAGTTGCTGAATATGGGAAGCATTTATACTTTTTGGAGGACAGTGAATAATGAACCAAAAGTGGCAAAGCAAAGATACATTTGGATGTTCTATAACCTTATGTTTAAGAATTTGGTGAAGACTATATCTGTTCCAATTGATGAACCTCAACAACCAGTGTCCAACTCCAAGCAGCAGAGTCTCAGAAAACAAGGAACAAGCAGGCGTTCAAGGTCCAGATCACAGGGTTAA

Protein sequence

>Msa0415610

MASASGLKRTDSLTDNNMSSPDATKQSRYHMKGCFAKYLEKGRRIIKVHDLMEEMEQVIKDQNDRNQILEGNLGFLLSFTQEAIVDPPYVAFAVRPDPGVWEYVKVSSENLSVEPITSTDYLKFKERIYDQKWANDENALEADFGAFDFPIPNLKLPSSIGNGLHFVSKFLTLRFSGKLAKTQPILDYLLSLNHQGESLMINDTLSSVAKLQMALTVADAFLSALPVDTPYDDFEPRFKQWGFESGWGDTAGRVKDTMRTLSEVLQAPDPMNMEKFFSRVPTIFNVVIFSIHGYFGQADVLGLPDTGGQVVYILDQVRALEAEMLLRIKQQGLKVNPQILVVTRLIPDAQGTKCNQELEPILDTKHSKILRVPFQTDKGILRQWVSRFDIYPYLERFTQDATTKILNLMEGKPDLIIGNYTDGNLAASLMASKLRITQGTIAHALEKTKYEDSDVKWKELDPKYHFSCQFMADTIAMNASDFIITSTYQEIAGSKDKPGQYESHAAFTLPGLCRVVSGINIFDPKFNIAAPGADQTVYFPYTEKDKRLIQFHPTIEDLLYSKVDNKDHIGYLENRRKPIIFSMARLDVVKNITGLVEWYGKNKRLRSLVNLVIVGGFFDPLKSKDREEMAEIRKMHDLIEKYQLKGQFRWIVAQTDRHRNGELYRFIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNHGGPAEITVDGVSGFHIDPLNGDESSNKIADFFEKCKVDSTHWNMISAAGLQRINECYTWKIYANKLLNMGSIYTFWRTVNNEPKVAKQRYIWMFYNLMFKNLVKTISVPIDEPQQPVSNSKQQSLRKQGTSRRSRSRSQG*