Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257340 | XP_003609855.1 | 97.106 | 311 | 9 | 0 | 1 | 311 | 1 | 311 | 0.0 | 633 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257340 | sp|Q9FPT1|UBP12_ARATH | 31.250 | 160 | 94 | 5 | 1 | 154 | 32 | 181 | 7.14e-15 | 79.0 |
| Msa1257340 | sp|Q9FPT1|UBP12_ARATH | 32.143 | 140 | 91 | 2 | 170 | 308 | 50 | 186 | 5.78e-14 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa1257340 | 0.823124 | 1.639819e-53 | -8.615850e-47 |
| Msa0064120 | Msa1257340 | 0.827193 | 1.790868e-54 | -8.615850e-47 |
| Msa0094740 | Msa1257340 | 0.881177 | 2.979886e-70 | -8.615850e-47 |
| Msa0740090 | Msa1257340 | 0.834468 | 2.946317e-56 | -8.615850e-47 |
| Msa0782750 | Msa1257340 | 0.817328 | 3.490400e-52 | -8.615850e-47 |
| Msa0820380 | Msa1257340 | 0.838644 | 2.544097e-57 | -8.615850e-47 |
| Msa0155180 | Msa1257340 | 0.818554 | 1.845256e-52 | -8.615850e-47 |
| Msa1014320 | Msa1257340 | 0.833709 | 4.564342e-56 | -8.615850e-47 |
| Msa1055310 | Msa1257340 | 0.806312 | 8.744893e-50 | -8.615850e-47 |
| Msa0525210 | Msa1257340 | 0.802637 | 5.104951e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257340 | MtrunA17_Chr4g0069161 | 97.106 | 311 | 9 | 0 | 1 | 311 | 1 | 311 | 0.0 | 633 |
| Msa1257340 | MtrunA17_Chr8g0334821 | 39.623 | 318 | 173 | 4 | 7 | 307 | 23 | 338 | 1.90e-72 | 231 |
| Msa1257340 | MtrunA17_Chr8g0334821 | 23.051 | 295 | 192 | 9 | 28 | 307 | 211 | 485 | 1.43e-11 | 65.1 |
| Msa1257340 | MtrunA17_Chr5g0443161 | 35.036 | 137 | 80 | 4 | 16 | 152 | 30 | 157 | 1.96e-20 | 88.6 |
| Msa1257340 | MtrunA17_Chr5g0443161 | 30.000 | 130 | 88 | 2 | 174 | 302 | 31 | 158 | 6.95e-14 | 70.5 |
| Msa1257340 | MtrunA17_Chr5g0439971 | 32.414 | 145 | 88 | 4 | 12 | 156 | 54 | 188 | 3.38e-17 | 82.4 |
| Msa1257340 | MtrunA17_Chr5g0439971 | 31.915 | 141 | 92 | 2 | 169 | 308 | 54 | 191 | 1.06e-16 | 80.9 |
| Msa1257340 | MtrunA17_Chr3g0119031 | 32.624 | 141 | 91 | 2 | 169 | 308 | 49 | 186 | 2.44e-16 | 79.7 |
| Msa1257340 | MtrunA17_Chr3g0119031 | 31.138 | 167 | 95 | 6 | 9 | 165 | 40 | 196 | 2.70e-16 | 79.7 |
| Msa1257340 | MtrunA17_Chr1g0166871 | 23.871 | 155 | 110 | 3 | 20 | 174 | 14 | 160 | 5.54e-15 | 74.3 |
| Msa1257340 | MtrunA17_Chr1g0170261 | 28.082 | 146 | 93 | 4 | 13 | 157 | 52 | 186 | 9.65e-15 | 75.1 |
| Msa1257340 | MtrunA17_Chr1g0170261 | 25.946 | 185 | 128 | 4 | 129 | 308 | 8 | 188 | 3.47e-13 | 70.1 |
| Msa1257340 | MtrunA17_Chr5g0443194 | 33.553 | 152 | 91 | 5 | 40 | 190 | 37 | 179 | 1.69e-13 | 70.9 |
| Msa1257340 | MtrunA17_Chr5g0443194 | 29.921 | 127 | 85 | 2 | 177 | 302 | 20 | 143 | 1.46e-11 | 65.1 |
| Msa1257340 | MtrunA17_Chr3g0137501 | 19.580 | 286 | 186 | 8 | 39 | 301 | 432 | 696 | 1.46e-11 | 65.5 |
| Msa1257340 | MtrunA17_Chr5g0442971 | 30.612 | 147 | 82 | 6 | 14 | 160 | 41 | 167 | 4.52e-11 | 63.5 |
| Msa1257340 | MtrunA17_Chr7g0268251 | 26.429 | 140 | 96 | 3 | 23 | 162 | 17 | 149 | 9.04e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257340 | AT3G17380.1 | 52.459 | 305 | 142 | 1 | 6 | 310 | 8 | 309 | 5.21e-112 | 327 |
| Msa1257340 | AT5G26280.1 | 32.353 | 306 | 201 | 4 | 7 | 311 | 49 | 349 | 2.72e-49 | 167 |
| Msa1257340 | AT5G26280.3 | 32.353 | 306 | 201 | 4 | 7 | 311 | 68 | 368 | 6.55e-49 | 167 |
| Msa1257340 | AT5G26260.1 | 32.895 | 304 | 198 | 4 | 9 | 311 | 52 | 350 | 1.37e-48 | 166 |
| Msa1257340 | AT5G26290.1 | 32.026 | 306 | 197 | 4 | 6 | 311 | 41 | 335 | 1.06e-44 | 155 |
| Msa1257340 | AT4G09780.2 | 34.641 | 306 | 183 | 10 | 8 | 309 | 53 | 345 | 6.04e-43 | 152 |
| Msa1257340 | AT2G04170.4 | 31.864 | 295 | 195 | 4 | 17 | 310 | 7 | 296 | 8.70e-43 | 149 |
| Msa1257340 | AT2G04170.3 | 31.864 | 295 | 195 | 4 | 17 | 310 | 7 | 296 | 8.70e-43 | 149 |
| Msa1257340 | AT5G26300.1 | 30.392 | 306 | 206 | 5 | 7 | 311 | 49 | 348 | 1.34e-42 | 150 |
| Msa1257340 | AT4G09770.4 | 33.333 | 306 | 186 | 10 | 8 | 309 | 26 | 317 | 4.08e-42 | 148 |
| Msa1257340 | AT4G09770.2 | 33.333 | 303 | 184 | 10 | 11 | 309 | 3 | 291 | 5.61e-42 | 147 |
| Msa1257340 | AT4G09770.1 | 33.333 | 303 | 184 | 10 | 11 | 309 | 3 | 291 | 5.61e-42 | 147 |
| Msa1257340 | AT2G04170.6 | 31.864 | 295 | 195 | 4 | 17 | 310 | 89 | 378 | 5.89e-42 | 149 |
| Msa1257340 | AT2G04170.2 | 31.864 | 295 | 195 | 4 | 17 | 310 | 129 | 418 | 1.31e-41 | 149 |
| Msa1257340 | AT2G04170.1 | 31.864 | 295 | 195 | 4 | 17 | 310 | 129 | 418 | 1.31e-41 | 149 |
| Msa1257340 | AT4G09780.1 | 33.333 | 315 | 186 | 9 | 8 | 309 | 53 | 356 | 8.46e-41 | 147 |
| Msa1257340 | AT3G28220.1 | 32.404 | 287 | 183 | 7 | 17 | 300 | 80 | 358 | 1.25e-40 | 145 |
| Msa1257340 | AT3G20370.2 | 30.897 | 301 | 195 | 7 | 10 | 304 | 56 | 349 | 1.29e-40 | 145 |
| Msa1257340 | AT3G20370.1 | 30.897 | 301 | 195 | 7 | 10 | 304 | 78 | 371 | 2.38e-40 | 145 |
| Msa1257340 | AT3G20360.1 | 30.341 | 323 | 206 | 9 | 1 | 310 | 45 | 361 | 1.24e-39 | 142 |
| Msa1257340 | AT4G09770.5 | 35.060 | 251 | 148 | 8 | 8 | 255 | 26 | 264 | 2.07e-38 | 137 |
| Msa1257340 | AT4G09770.3 | 35.081 | 248 | 146 | 8 | 11 | 255 | 3 | 238 | 2.89e-38 | 136 |
| Msa1257340 | AT3G22080.1 | 28.808 | 302 | 201 | 7 | 10 | 305 | 12 | 305 | 3.27e-38 | 137 |
| Msa1257340 | AT5G26320.1 | 28.571 | 308 | 212 | 5 | 7 | 311 | 49 | 351 | 2.51e-37 | 136 |
| Msa1257340 | AT2G04170.5 | 33.884 | 242 | 155 | 3 | 14 | 255 | 126 | 362 | 6.69e-37 | 135 |
| Msa1257340 | AT5G26280.2 | 28.431 | 306 | 190 | 5 | 7 | 311 | 49 | 326 | 1.64e-35 | 131 |
| Msa1257340 | AT2G04190.1 | 29.642 | 307 | 205 | 7 | 8 | 310 | 110 | 409 | 1.77e-35 | 132 |
| Msa1257340 | AT2G15710.1 | 30.420 | 286 | 179 | 7 | 5 | 287 | 86 | 354 | 1.09e-33 | 127 |
| Msa1257340 | AT4G00780.1 | 30.137 | 292 | 183 | 8 | 20 | 307 | 22 | 296 | 4.39e-32 | 121 |
| Msa1257340 | AT1G69650.1 | 27.273 | 308 | 184 | 9 | 8 | 307 | 13 | 288 | 8.82e-32 | 120 |
| Msa1257340 | AT4G01390.1 | 29.236 | 301 | 173 | 8 | 20 | 306 | 22 | 296 | 4.80e-31 | 118 |
| Msa1257340 | AT2G04170.7 | 37.306 | 193 | 116 | 3 | 14 | 206 | 126 | 313 | 1.54e-30 | 117 |
| Msa1257340 | AT1G58270.1 | 28.383 | 303 | 196 | 9 | 17 | 311 | 94 | 383 | 1.72e-29 | 116 |
| Msa1257340 | AT3G22085.1 | 28.996 | 269 | 164 | 7 | 6 | 272 | 7 | 250 | 1.86e-29 | 114 |
| Msa1257340 | AT1G65150.2 | 31.667 | 240 | 147 | 7 | 36 | 272 | 32 | 257 | 1.11e-28 | 112 |
| Msa1257340 | AT1G65150.1 | 31.667 | 240 | 147 | 7 | 36 | 272 | 32 | 257 | 1.11e-28 | 112 |
| Msa1257340 | AT3G20380.1 | 24.830 | 294 | 215 | 3 | 8 | 301 | 77 | 364 | 1.19e-28 | 113 |
| Msa1257340 | AT2G32870.1 | 25.000 | 320 | 213 | 7 | 5 | 310 | 110 | 416 | 6.28e-26 | 107 |
| Msa1257340 | AT1G65370.1 | 28.821 | 229 | 147 | 6 | 78 | 304 | 7 | 221 | 6.32e-25 | 100 |
| Msa1257340 | AT2G32880.1 | 25.155 | 322 | 212 | 10 | 5 | 310 | 10 | 318 | 8.62e-24 | 99.4 |
| Msa1257340 | AT1G69660.1 | 26.872 | 227 | 159 | 4 | 82 | 307 | 5 | 225 | 2.31e-23 | 96.3 |
| Msa1257340 | AT2G32880.2 | 26.336 | 262 | 169 | 8 | 5 | 255 | 10 | 258 | 5.38e-21 | 91.3 |
| Msa1257340 | AT2G32870.2 | 26.154 | 260 | 170 | 6 | 5 | 255 | 110 | 356 | 5.01e-20 | 89.7 |
| Msa1257340 | AT3G46190.1 | 25.510 | 294 | 178 | 7 | 14 | 304 | 29 | 284 | 1.74e-19 | 87.0 |
| Msa1257340 | AT3G46190.2 | 25.510 | 294 | 178 | 7 | 14 | 304 | 49 | 304 | 2.24e-19 | 87.0 |
| Msa1257340 | AT1G65050.2 | 34.545 | 110 | 68 | 2 | 36 | 145 | 32 | 137 | 6.99e-18 | 79.7 |
| Msa1257340 | AT1G65050.1 | 34.545 | 110 | 68 | 2 | 36 | 145 | 32 | 137 | 6.99e-18 | 79.7 |
| Msa1257340 | AT5G06600.3 | 31.250 | 160 | 94 | 5 | 1 | 154 | 32 | 181 | 6.65e-16 | 79.0 |
| Msa1257340 | AT5G06600.3 | 32.143 | 140 | 91 | 2 | 170 | 308 | 50 | 186 | 6.66e-15 | 75.9 |
| Msa1257340 | AT5G06600.2 | 31.250 | 160 | 94 | 5 | 1 | 154 | 31 | 180 | 6.99e-16 | 79.0 |
| Msa1257340 | AT5G06600.2 | 32.143 | 140 | 91 | 2 | 170 | 308 | 49 | 185 | 5.71e-15 | 76.3 |
| Msa1257340 | AT5G06600.1 | 31.250 | 160 | 94 | 5 | 1 | 154 | 32 | 181 | 7.25e-16 | 79.0 |
| Msa1257340 | AT5G06600.1 | 32.143 | 140 | 91 | 2 | 170 | 308 | 50 | 186 | 5.87e-15 | 75.9 |
| Msa1257340 | AT3G11910.4 | 31.008 | 129 | 82 | 3 | 26 | 154 | 58 | 179 | 1.17e-15 | 78.2 |
| Msa1257340 | AT3G11910.4 | 31.429 | 140 | 92 | 2 | 170 | 308 | 48 | 184 | 1.66e-14 | 74.7 |
| Msa1257340 | AT3G11910.2 | 31.008 | 129 | 82 | 3 | 26 | 154 | 58 | 179 | 1.17e-15 | 78.2 |
| Msa1257340 | AT3G11910.2 | 31.429 | 140 | 92 | 2 | 170 | 308 | 48 | 184 | 1.66e-14 | 74.7 |
| Msa1257340 | AT3G58340.2 | 33.103 | 145 | 89 | 3 | 169 | 310 | 1 | 140 | 1.18e-15 | 76.6 |
| Msa1257340 | AT3G11910.3 | 31.008 | 129 | 82 | 3 | 26 | 154 | 59 | 180 | 1.19e-15 | 78.2 |
| Msa1257340 | AT3G11910.3 | 31.429 | 140 | 92 | 2 | 170 | 308 | 49 | 185 | 1.72e-14 | 74.7 |
| Msa1257340 | AT3G11910.1 | 31.008 | 129 | 82 | 3 | 26 | 154 | 59 | 180 | 1.19e-15 | 78.2 |
| Msa1257340 | AT3G11910.1 | 31.429 | 140 | 92 | 2 | 170 | 308 | 49 | 185 | 1.72e-14 | 74.7 |
| Msa1257340 | AT3G58340.1 | 33.103 | 145 | 89 | 3 | 169 | 310 | 1 | 140 | 1.58e-15 | 76.3 |
| Msa1257340 | AT3G58210.1 | 32.168 | 143 | 95 | 2 | 169 | 310 | 1 | 142 | 1.30e-14 | 73.6 |
| Msa1257340 | AT3G58210.1 | 32.576 | 132 | 79 | 4 | 24 | 154 | 13 | 135 | 7.24e-12 | 65.5 |
| Msa1257340 | AT3G58370.1 | 32.192 | 146 | 94 | 2 | 168 | 310 | 1 | 144 | 6.98e-13 | 68.6 |
| Msa1257340 | AT3G58370.1 | 27.941 | 204 | 134 | 5 | 24 | 227 | 14 | 204 | 7.44e-11 | 62.4 |
| Msa1257340 | AT1G31390.1 | 32.540 | 126 | 80 | 2 | 169 | 291 | 1 | 124 | 7.37e-13 | 67.8 |
| Msa1257340 | AT3G58410.2 | 31.618 | 136 | 88 | 2 | 176 | 311 | 8 | 138 | 1.54e-12 | 67.4 |
| Msa1257340 | AT3G58360.1 | 31.724 | 145 | 91 | 3 | 169 | 310 | 1 | 140 | 1.72e-12 | 67.4 |
| Msa1257340 | AT2G05420.1 | 32.374 | 139 | 87 | 3 | 178 | 310 | 11 | 148 | 1.13e-11 | 64.7 |
| Msa1257340 | AT1G31400.1 | 31.690 | 142 | 89 | 3 | 169 | 307 | 1 | 137 | 3.20e-11 | 63.2 |
| Msa1257340 | AT3G58250.1 | 30.935 | 139 | 90 | 3 | 176 | 311 | 10 | 145 | 9.63e-11 | 62.4 |
Find 95 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTCTGTGCATATATTT+TGG | 0.140548 | 8_2:+57978922 | Msa1257330:three_prime_UTR |
| CAACAAATCGTTGTTTATAT+TGG | 0.212724 | 8_2:-57978295 | Msa1257340:three_prime_UTR |
| GTCTACTTGCAGCTAATTAT+TGG | 0.237931 | 8_2:-57978691 | Msa1257340:intron |
| TATGAGTGTAACAATCTAAT+TGG | 0.265742 | 8_2:-57978410 | Msa1257340:three_prime_UTR |
| GATGTTGAGGTTACAGTTCT+TGG | 0.266368 | 8_2:-57978566 | Msa1257340:CDS |
| TTTAATAGATGATGTGAAAA+AGG | 0.278698 | 8_2:-57979443 | Msa1257340:intron |
| TCCTCTCAAGGATTTCAATC+TGG | 0.293183 | 8_2:-57979371 | Msa1257340:CDS |
| CATCCTCCTCCTTGTAAGTT+TGG | 0.322568 | 8_2:-57978105 | Msa1257340:three_prime_UTR |
| AGCAATCCAAGCATCAGTTT+TGG | 0.342021 | 8_2:-57978880 | Msa1257340:CDS |
| AATCTCCCATACATGCTTGT+AGG | 0.374747 | 8_2:+57979234 | None:intergenic |
| CCCTCCCCTACAAGCATGTA+TGG | 0.374887 | 8_2:-57979240 | Msa1257340:CDS |
| CGTTGTTTATATTGGAGATT+CGG | 0.378593 | 8_2:-57978287 | Msa1257340:three_prime_UTR |
| CTGGATGATATATGTGCATT+TGG | 0.382581 | 8_2:-57979331 | Msa1257340:CDS |
| GATTAAAGACTTCTCAAAGT+TGG | 0.382721 | 8_2:-57979215 | Msa1257340:CDS |
| GAGGAACAAACCGTCATCTT+TGG | 0.387041 | 8_2:+57980527 | None:intergenic |
| CTGTTGGGTTAGCTAAAGTT+AGG | 0.387750 | 8_2:+57978960 | Msa1257330:three_prime_UTR |
| ATTACTGCACAAAATAAATC+TGG | 0.389938 | 8_2:+57978637 | Msa1257330:three_prime_UTR |
| CTCCTTGTAAGTTTGGTAGA+TGG | 0.391844 | 8_2:-57978098 | Msa1257340:three_prime_UTR |
| TGTATATTGTATACCATTTG+TGG | 0.403396 | 8_2:+57979852 | None:intergenic |
| AGACTTCTCAAAGTTGGATT+CGG | 0.407331 | 8_2:-57979209 | Msa1257340:CDS |
| GGATCATATTTCACTATACT+TGG | 0.407706 | 8_2:-57979691 | Msa1257340:CDS |
| TTGTTACACTCATAGATTGC+AGG | 0.409345 | 8_2:+57978419 | Msa1257330:three_prime_UTR |
| TTGTAGTTTCCAACATTGAA+TGG | 0.413486 | 8_2:+57979169 | None:intergenic |
| TTCACAGAATGAAGGTTGAA+TGG | 0.418718 | 8_2:-57979411 | Msa1257340:CDS |
| TACAGCAGTGAGAAAACATT+TGG | 0.420898 | 8_2:+57978145 | Msa1257330:CDS |
| TTCTATAGAGAGATATGAAT+CGG | 0.423671 | 8_2:-57979894 | Msa1257340:CDS |
| TCACAGAATGAAGGTTGAAT+GGG | 0.425550 | 8_2:-57979410 | Msa1257340:CDS |
| CCTCTCAAGGATTTCAATCT+GGG | 0.426272 | 8_2:-57979370 | Msa1257340:CDS |
| GAGCAGAAGTCTTTGTTTGT+AGG | 0.431985 | 8_2:-57979309 | Msa1257340:CDS |
| GTATATGTAATTATTATGTA+TGG | 0.432832 | 8_2:+57980565 | None:intergenic |
| CACAATTGACAAATACTTGA+AGG | 0.442560 | 8_2:-57978205 | Msa1257340:three_prime_UTR |
| ACCTTTCCAAAACTGATGCT+TGG | 0.443667 | 8_2:+57978874 | Msa1257330:intron |
| ATCTCCCATACATGCTTGTA+GGG | 0.444436 | 8_2:+57979235 | None:intergenic |
| GTCATAAGACTAGCTGTAGA+TGG | 0.448920 | 8_2:-57978073 | Msa1257340:three_prime_UTR |
| AGCAGAAGTCTTTGTTTGTA+GGG | 0.457138 | 8_2:-57979308 | Msa1257340:CDS |
| GAGTAGCGGACTAGCGGACT+TGG | 0.457546 | 8_2:+57978375 | Msa1257330:three_prime_UTR |
| GTAAAGTACCTTGGAGAACT+AGG | 0.458919 | 8_2:+57979580 | None:intergenic |
| GATTTCAATCTGGGCTCTAA+AGG | 0.459503 | 8_2:-57979361 | Msa1257340:CDS |
| AAGCTCACTTCATCCTGGTT+GGG | 0.466058 | 8_2:-57979655 | Msa1257340:CDS |
| TAATTTCACCAGTCAATACC+TGG | 0.466177 | 8_2:-57978618 | Msa1257340:CDS |
| TATTTCACTATACTTGGCAT+TGG | 0.479251 | 8_2:-57979685 | Msa1257340:CDS |
| TGATCAATTTATTCCTCTCA+AGG | 0.485622 | 8_2:-57979383 | Msa1257340:CDS |
| GGGCTCTAAAGGTTATCTAC+TGG | 0.485976 | 8_2:-57979350 | Msa1257340:CDS |
| GAGAAAACATTTGGTTAACT+TGG | 0.487241 | 8_2:+57978154 | Msa1257330:exon |
| CCAAATCTTCTCATCTTATG+TGG | 0.487490 | 8_2:+57978027 | Msa1257330:intron |
| ATACAAGAATGTAGTTGCAT+TGG | 0.491129 | 8_2:-57978502 | Msa1257340:three_prime_UTR |
| CAAGCTCACTTCATCCTGGT+TGG | 0.493535 | 8_2:-57979656 | Msa1257340:CDS |
| TCTATAGAGAGATATGAATC+GGG | 0.505763 | 8_2:-57979893 | Msa1257340:CDS |
| AAACTGTATCCCAAAGGAAA+AGG | 0.507112 | 8_2:-57979013 | Msa1257340:CDS |
| GGAAATGAGTTCACAAATGT+AGG | 0.512337 | 8_2:+57980586 | None:intergenic |
| ACCGTCATCTTTGGTATCCA+TGG | 0.513134 | 8_2:+57980536 | None:intergenic |
| TTGAAGCTGGAGGCCACAAA+TGG | 0.515480 | 8_2:-57979865 | Msa1257340:intron |
| CTCCATCTACCAAACTTACA+AGG | 0.518610 | 8_2:+57978096 | Msa1257330:CDS |
| AGAATCTTTGATCATGATGA+AGG | 0.521528 | 8_2:-57979266 | Msa1257340:CDS |
| CAAACTTACAAGGAGGAGGA+TGG | 0.523873 | 8_2:+57978106 | Msa1257330:CDS |
| GACTCTAAGCCATTCAATGT+TGG | 0.526449 | 8_2:-57979178 | Msa1257340:CDS |
| CATTTGCTTTGTAGATGTTG+AGG | 0.531213 | 8_2:-57978579 | Msa1257340:CDS |
| AGGGAAAACTACACAGGTAA+AGG | 0.536644 | 8_2:-57979289 | Msa1257340:CDS |
| CAAAGGAAAAGGTACTGACT+CGG | 0.538845 | 8_2:-57979002 | Msa1257340:CDS |
| CCCATACATGCTTGTAGGGG+AGG | 0.542077 | 8_2:+57979239 | None:intergenic |
| GAATCGGGGAAGTTTGAAGC+TGG | 0.551406 | 8_2:-57979878 | Msa1257340:CDS |
| TAGATACCCCAGGTATTGAC+TGG | 0.568960 | 8_2:+57978610 | Msa1257330:three_prime_UTR |
| AAACAAAAGCAAGAATGTAA+AGG | 0.570463 | 8_2:-57979712 | Msa1257340:CDS |
| GAATCAAGCTCACTTCATCC+TGG | 0.576113 | 8_2:-57979660 | Msa1257340:CDS |
| CACAGAATGAAGGTTGAATG+GGG | 0.578801 | 8_2:-57979409 | Msa1257340:CDS |
| CCATACATGCTTGTAGGGGA+GGG | 0.581374 | 8_2:+57979240 | None:intergenic |
| AAAGGAAAAGGTACTGACTC+GGG | 0.585829 | 8_2:-57979001 | Msa1257340:CDS |
| CTACCAAACTTACAAGGAGG+AGG | 0.590671 | 8_2:+57978102 | Msa1257330:CDS |
| GTTTGTAGGGAAAACTACAC+AGG | 0.592836 | 8_2:-57979295 | Msa1257340:CDS |
| CTTGTAAGTTTGGTAGATGG+AGG | 0.594122 | 8_2:-57978095 | Msa1257340:three_prime_UTR |
| AAACTTACAAGGAGGAGGAT+GGG | 0.597052 | 8_2:+57978107 | Msa1257330:CDS |
| TAGCTGTAGATGGAATCAAA+AGG | 0.599057 | 8_2:-57978063 | Msa1257340:three_prime_UTR |
| TTTACATAGATTTCCCAACC+AGG | 0.601857 | 8_2:+57979642 | None:intergenic |
| ATTACATATACATCTAGCCA+TGG | 0.612494 | 8_2:-57980553 | Msa1257340:exon |
| AATTTCACCAGTCAATACCT+GGG | 0.612530 | 8_2:-57978617 | Msa1257340:CDS |
| CATAGATTGCAGGATTGACA+AGG | 0.619050 | 8_2:+57978429 | Msa1257330:three_prime_UTR |
| CCTCCCCTACAAGCATGTAT+GGG | 0.619373 | 8_2:-57979239 | Msa1257340:CDS |
| TGAGGTTACAGTTCTTGGAG+TGG | 0.629632 | 8_2:-57978561 | Msa1257340:CDS |
| ATACCTGGGGTATCTAGTGA+AGG | 0.632705 | 8_2:-57978603 | Msa1257340:CDS |
| CAGATAAAACTGTATCCCAA+AGG | 0.633902 | 8_2:-57979019 | Msa1257340:CDS |
| TGTCCTTCACTAGATACCCC+AGG | 0.633913 | 8_2:+57978600 | Msa1257330:three_prime_UTR |
| TCGGGGAAGTTTGAAGCTGG+AGG | 0.635431 | 8_2:-57979875 | Msa1257340:CDS |
| GACAACTACCTAGTTCTCCA+AGG | 0.638057 | 8_2:-57979588 | Msa1257340:intron |
| GCCATGGATACCAAAGATGA+CGG | 0.641327 | 8_2:-57980537 | Msa1257340:intron |
| TGTTAAGAGTAGCGGACTAG+CGG | 0.641760 | 8_2:+57978369 | Msa1257330:three_prime_UTR |
| TCTCTATAGAATTAGTAGTG+AGG | 0.653359 | 8_2:+57979906 | None:intergenic |
| CCCAGATTGAAATCCTTGAG+AGG | 0.660903 | 8_2:+57979370 | None:intergenic |
| TGTGCCATGTTCATGACTTG+AGG | 0.660953 | 8_2:+57978661 | Msa1257330:three_prime_UTR |
| AAGTTAGTTATGTATCCAAG+TGG | 0.687329 | 8_2:-57979735 | Msa1257340:CDS |
| TCAATGTTGGAAACTACAAG+TGG | 0.691657 | 8_2:-57979165 | Msa1257340:intron |
| CTATAGAGAGATATGAATCG+GGG | 0.694653 | 8_2:-57979892 | Msa1257340:CDS |
| TCTCCCATACATGCTTGTAG+GGG | 0.699554 | 8_2:+57979236 | None:intergenic |
| AGTGCCTCAAGTCATGAACA+TGG | 0.700230 | 8_2:-57978665 | Msa1257340:CDS |
| ATTTCACCAGTCAATACCTG+GGG | 0.717112 | 8_2:-57978616 | Msa1257340:CDS |
| CATCTACCAAACTTACAAGG+AGG | 0.745667 | 8_2:+57978099 | Msa1257330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAAAATTAACTCA+AGG | - | chr8_2:57978542-57978561 | Msa1257340:exon | 10.0% |
| !!! | TTCATGAAATTATTTTTATA+AGG | + | chr8_2:57978812-57978831 | Msa1257330:intron | 10.0% |
| !! | GTATATGTAATTATTATGTA+TGG | + | chr8_2:57978063-57978082 | Msa1257330:intron | 15.0% |
| !! | CTTATAAAAAATAAAATTGC+AGG | - | chr8_2:57978630-57978649 | Msa1257340:CDS | 15.0% |
| !!! | AATTTCATGAATGATAATTT+TGG | - | chr8_2:57978821-57978840 | Msa1257340:intron | 15.0% |
| !! | TCTTAACATGAAAAAAAATA+TGG | - | chr8_2:57980271-57980290 | Msa1257340:intron | 15.0% |
| !! | ATGTACAATTAATAAACCAA+TGG | - | chr8_2:57978201-57978220 | Msa1257340:three_prime_UTR | 20.0% |
| !! | TGTACAATTAATAAACCAAT+GGG | - | chr8_2:57978202-57978221 | Msa1257340:three_prime_UTR | 20.0% |
| !! | ATGTACAATTAATAAACCAA+TGG | - | chr8_2:57978201-57978220 | Msa1257340:three_prime_UTR | 20.0% |
| !! | TGTACAATTAATAAACCAAT+GGG | - | chr8_2:57978202-57978221 | Msa1257340:three_prime_UTR | 20.0% |
| !! | TGAGTACATAATATATTTCA+TGG | - | chr8_2:57978428-57978447 | Msa1257340:three_prime_UTR | 20.0% |
| !! | ATATATTTCATGGATAATGA+TGG | - | chr8_2:57978438-57978457 | Msa1257340:three_prime_UTR | 20.0% |
| !!! | ATTTTCATTATGTAATGAAC+TGG | + | chr8_2:57978684-57978703 | Msa1257330:intron | 20.0% |
| !! | AGCAATCCAAAAAAAAAATT+AGG | + | chr8_2:57979159-57979178 | None:intergenic | 20.0% |
| !! | TTTAATAGATGATGTGAAAA+AGG | - | chr8_2:57979182-57979201 | Msa1257340:CDS | 20.0% |
| !!! | TTATTTAGTTTAGCAAGAAA+TGG | + | chr8_2:57979502-57979521 | None:intergenic | 20.0% |
| !! | CAAAAAGTTATCATATAACT+TGG | + | chr8_2:57979582-57979601 | None:intergenic | 20.0% |
| !! | TAATAAACCAATGGGATTTT+TGG | - | chr8_2:57978210-57978229 | Msa1257340:three_prime_UTR | 25.0% |
| !! | AATAAACCAATGGGATTTTT+GGG | - | chr8_2:57978211-57978230 | Msa1257340:three_prime_UTR | 25.0% |
| !! | TAATAAACCAATGGGATTTT+TGG | - | chr8_2:57978210-57978229 | Msa1257340:three_prime_UTR | 25.0% |
| !! | AATAAACCAATGGGATTTTT+GGG | - | chr8_2:57978211-57978230 | Msa1257340:three_prime_UTR | 25.0% |
| !!! | TTTGGGGAACAATTTTTTTT+TGG | - | chr8_2:57978402-57978421 | Msa1257340:three_prime_UTR | 25.0% |
| ! | TTCTATAGAGAGATATGAAT+CGG | - | chr8_2:57978731-57978750 | Msa1257340:intron | 25.0% |
| ! | TGTATATTGTATACCATTTG+TGG | + | chr8_2:57978776-57978795 | Msa1257330:intron | 25.0% |
| ! | AAACAAAAGCAAGAATGTAA+AGG | - | chr8_2:57978913-57978932 | Msa1257340:CDS | 25.0% |
| !! | AAAAAAAAGGTAAAGTACCT+TGG | + | chr8_2:57979057-57979076 | Msa1257330:three_prime_UTR | 25.0% |
| !! | AGATCAAAATCTATTTTCGA+GGG | + | chr8_2:57979108-57979127 | None:intergenic | 25.0% |
| ! | TTAAACAGTTTAGTGTTTGA+CGG | - | chr8_2:57979130-57979149 | Msa1257340:intron | 25.0% |
| ! | AAAAAGATTTCACAGAATGA+AGG | - | chr8_2:57979206-57979225 | Msa1257340:CDS | 25.0% |
| ! | TTCAAACAATACTCTTTGAA+TGG | + | chr8_2:57979527-57979546 | None:intergenic | 25.0% |
| !! | GTTATATGATAACTTTTTGC+AGG | - | chr8_2:57979583-57979602 | Msa1257340:intron | 25.0% |
| !! | TATTGTCTGTGCATATATTT+TGG | + | chr8_2:57979706-57979725 | None:intergenic | 25.0% |
| ! | ATTACTGCACAAAATAAATC+TGG | + | chr8_2:57979991-57980010 | None:intergenic | 25.0% |
| ! | TATGAGTGTAACAATCTAAT+TGG | - | chr8_2:57980215-57980234 | Msa1257340:intron | 25.0% |
| !!! | TTTTTTCATGTTAAGAGTAG+CGG | + | chr8_2:57980267-57980286 | None:intergenic | 25.0% |
| ! | CAACAAATCGTTGTTTATAT+TGG | - | chr8_2:57980330-57980349 | Msa1257340:intron | 25.0% |
| ATTACATATACATCTAGCCA+TGG | - | chr8_2:57978072-57978091 | Msa1257340:three_prime_UTR | 30.0% | |
| ! | ATAAACCAATGGGATTTTTG+GGG | - | chr8_2:57978212-57978231 | Msa1257340:three_prime_UTR | 30.0% |
| ATTACATATACATCTAGCCA+TGG | - | chr8_2:57978072-57978091 | Msa1257340:three_prime_UTR | 30.0% | |
| ! | ATAAACCAATGGGATTTTTG+GGG | - | chr8_2:57978212-57978231 | Msa1257340:three_prime_UTR | 30.0% |
| ! | ATTCCAGATTTGTTTGAGTA+GGG | + | chr8_2:57978578-57978597 | Msa1257330:three_prime_UTR | 30.0% |
| ! | AATTCCAGATTTGTTTGAGT+AGG | + | chr8_2:57978579-57978598 | Msa1257330:three_prime_UTR | 30.0% |
| CACATAGAATAACTAAGCAT+AGG | + | chr8_2:57978605-57978624 | Msa1257330:three_prime_UTR | 30.0% | |
| TCTCTATAGAATTAGTAGTG+AGG | + | chr8_2:57978722-57978741 | Msa1257330:intron | 30.0% | |
| TCTATAGAGAGATATGAATC+GGG | - | chr8_2:57978732-57978751 | Msa1257340:intron | 30.0% | |
| AAAATGTGTTTATACCTCAC+AGG | - | chr8_2:57978867-57978886 | Msa1257340:intron | 30.0% | |
| AAGTTAGTTATGTATCCAAG+TGG | - | chr8_2:57978890-57978909 | Msa1257340:CDS | 30.0% | |
| GGATCATATTTCACTATACT+TGG | - | chr8_2:57978934-57978953 | Msa1257340:CDS | 30.0% | |
| TATTTCACTATACTTGGCAT+TGG | - | chr8_2:57978940-57978959 | Msa1257340:CDS | 30.0% | |
| ! | CAGATCAAAATCTATTTTCG+AGG | + | chr8_2:57979109-57979128 | None:intergenic | 30.0% |
| !!! | CGGTCTCCTAATTTTTTTTT+TGG | - | chr8_2:57979150-57979169 | Msa1257340:intron | 30.0% |
| TGATCAATTTATTCCTCTCA+AGG | - | chr8_2:57979242-57979261 | Msa1257340:CDS | 30.0% | |
| AGAATCTTTGATCATGATGA+AGG | - | chr8_2:57979359-57979378 | Msa1257340:CDS | 30.0% | |
| GATTAAAGACTTCTCAAAGT+TGG | - | chr8_2:57979410-57979429 | Msa1257340:CDS | 30.0% | |
| TTGTAGTTTCCAACATTGAA+TGG | + | chr8_2:57979459-57979478 | None:intergenic | 30.0% | |
| ! | TTTAGTTTAGCAAGAAATGG+AGG | + | chr8_2:57979499-57979518 | None:intergenic | 30.0% |
| ! | GTTACACTTTGTTGTGAAAT+TGG | - | chr8_2:57979781-57979800 | Msa1257340:intron | 30.0% |
| ATACAAGAATGTAGTTGCAT+TGG | - | chr8_2:57980123-57980142 | Msa1257340:intron | 30.0% | |
| CGTTGTTTATATTGGAGATT+CGG | - | chr8_2:57980338-57980357 | Msa1257340:intron | 30.0% | |
| CACAATTGACAAATACTTGA+AGG | - | chr8_2:57980420-57980439 | Msa1257340:intron | 30.0% | |
| GAGAAAACATTTGGTTAACT+TGG | + | chr8_2:57980474-57980493 | None:intergenic | 30.0% | |
| GGAAATGAGTTCACAAATGT+AGG | + | chr8_2:57978042-57978061 | Msa1257330:intron | 35.0% | |
| CTAAAGATGCTACCGAATAA+AGG | + | chr8_2:57978129-57978148 | Msa1257330:CDS | 35.0% | |
| CTAAAGATGCTACCGAATAA+AGG | + | chr8_2:57978129-57978148 | Msa1257330:CDS | 35.0% | |
| CTATAGAGAGATATGAATCG+GGG | - | chr8_2:57978733-57978752 | Msa1257340:intron | 35.0% | |
| TACATAACTAACTTCCTGTG+AGG | + | chr8_2:57978884-57978903 | Msa1257330:three_prime_UTR | 35.0% | |
| !! | TTCTTGCTTTTGTTTCCACT+TGG | + | chr8_2:57978908-57978927 | Msa1257330:three_prime_UTR | 35.0% |
| TTTACATAGATTTCCCAACC+AGG | + | chr8_2:57978986-57979005 | Msa1257330:three_prime_UTR | 35.0% | |
| TTCACAGAATGAAGGTTGAA+TGG | - | chr8_2:57979214-57979233 | Msa1257340:CDS | 35.0% | |
| TCACAGAATGAAGGTTGAAT+GGG | - | chr8_2:57979215-57979234 | Msa1257340:CDS | 35.0% | |
| CTGGATGATATATGTGCATT+TGG | - | chr8_2:57979294-57979313 | Msa1257340:CDS | 35.0% | |
| ! | AGCAGAAGTCTTTGTTTGTA+GGG | - | chr8_2:57979317-57979336 | Msa1257340:CDS | 35.0% |
| AGACTTCTCAAAGTTGGATT+CGG | - | chr8_2:57979416-57979435 | Msa1257340:CDS | 35.0% | |
| TCAATGTTGGAAACTACAAG+TGG | - | chr8_2:57979460-57979479 | Msa1257340:intron | 35.0% | |
| ! | GAGTATTGTTTGAACTCAAC+AGG | - | chr8_2:57979533-57979552 | Msa1257340:intron | 35.0% |
| CAGATAAAACTGTATCCCAA+AGG | - | chr8_2:57979606-57979625 | Msa1257340:CDS | 35.0% | |
| AAACTGTATCCCAAAGGAAA+AGG | - | chr8_2:57979612-57979631 | Msa1257340:CDS | 35.0% | |
| !!! | TGCATATATTTTGGAACCTG+GGG | + | chr8_2:57979697-57979716 | None:intergenic | 35.0% |
| !!! | GTGCATATATTTTGGAACCT+GGG | + | chr8_2:57979698-57979717 | None:intergenic | 35.0% |
| !!! | TGTGCATATATTTTGGAACC+TGG | + | chr8_2:57979699-57979718 | None:intergenic | 35.0% |
| ! | ACTTTGTTGTGAAATTGGTC+AGG | - | chr8_2:57979786-57979805 | Msa1257340:intron | 35.0% |
| !!! | CATTCAGCTGTCATTTTGTA+TGG | + | chr8_2:57979823-57979842 | None:intergenic | 35.0% |
| GTCTACTTGCAGCTAATTAT+TGG | - | chr8_2:57979934-57979953 | Msa1257340:CDS | 35.0% | |
| TAATTTCACCAGTCAATACC+TGG | - | chr8_2:57980007-57980026 | Msa1257340:intron | 35.0% | |
| AATTTCACCAGTCAATACCT+GGG | - | chr8_2:57980008-57980027 | Msa1257340:intron | 35.0% | |
| CATTTGCTTTGTAGATGTTG+AGG | - | chr8_2:57980046-57980065 | Msa1257340:intron | 35.0% | |
| TTGTTACACTCATAGATTGC+AGG | + | chr8_2:57980209-57980228 | None:intergenic | 35.0% | |
| TACAGCAGTGAGAAAACATT+TGG | + | chr8_2:57980483-57980502 | None:intergenic | 35.0% | |
| TAGCTGTAGATGGAATCAAA+AGG | - | chr8_2:57980562-57980581 | Msa1257340:five_prime_UTR | 35.0% | |
| GTTCCTCTCTCTCCTTTATT+CGG | - | chr8_2:57978114-57978133 | Msa1257340:three_prime_UTR | 40.0% | |
| TTGTTCCCCAAAAATCCCAT+TGG | + | chr8_2:57978220-57978239 | Msa1257330:three_prime_UTR | 40.0% | |
| GTTCCTCTCTCTCCTTTATT+CGG | - | chr8_2:57978114-57978133 | Msa1257340:three_prime_UTR | 40.0% | |
| TTGTTCCCCAAAAATCCCAT+TGG | + | chr8_2:57978220-57978239 | Msa1257330:three_prime_UTR | 40.0% | |
| ! | GTAAAGTACCTTGGAGAACT+AGG | + | chr8_2:57979048-57979067 | Msa1257330:three_prime_UTR | 40.0% |
| CACAGAATGAAGGTTGAATG+GGG | - | chr8_2:57979216-57979235 | Msa1257340:CDS | 40.0% | |
| TCCTCTCAAGGATTTCAATC+TGG | - | chr8_2:57979254-57979273 | Msa1257340:CDS | 40.0% | |
| CCTCTCAAGGATTTCAATCT+GGG | - | chr8_2:57979255-57979274 | Msa1257340:CDS | 40.0% | |
| ! | GATTTCAATCTGGGCTCTAA+AGG | - | chr8_2:57979264-57979283 | Msa1257340:CDS | 40.0% |
| ! | GAGCAGAAGTCTTTGTTTGT+AGG | - | chr8_2:57979316-57979335 | Msa1257340:CDS | 40.0% |
| GTTTGTAGGGAAAACTACAC+AGG | - | chr8_2:57979330-57979349 | Msa1257340:CDS | 40.0% | |
| AGGGAAAACTACACAGGTAA+AGG | - | chr8_2:57979336-57979355 | Msa1257340:CDS | 40.0% | |
| ATCTCCCATACATGCTTGTA+GGG | + | chr8_2:57979393-57979412 | None:intergenic | 40.0% | |
| AATCTCCCATACATGCTTGT+AGG | + | chr8_2:57979394-57979413 | None:intergenic | 40.0% | |
| GACTCTAAGCCATTCAATGT+TGG | - | chr8_2:57979447-57979466 | Msa1257340:intron | 40.0% | |
| ! | GAGTCAGTACCTTTTCCTTT+GGG | + | chr8_2:57979624-57979643 | None:intergenic | 40.0% |
| !! | CAAAGGAAAAGGTACTGACT+CGG | - | chr8_2:57979623-57979642 | Msa1257340:CDS | 40.0% |
| !! | AAAGGAAAAGGTACTGACTC+GGG | - | chr8_2:57979624-57979643 | Msa1257340:CDS | 40.0% |
| !! | CTGTTGGGTTAGCTAAAGTT+AGG | + | chr8_2:57979668-57979687 | None:intergenic | 40.0% |
| !!! | CATATATTTTGGAACCTGGG+GGG | + | chr8_2:57979695-57979714 | None:intergenic | 40.0% |
| !!! | GCATATATTTTGGAACCTGG+GGG | + | chr8_2:57979696-57979715 | None:intergenic | 40.0% |
| ! | AGCAATCCAAGCATCAGTTT+TGG | - | chr8_2:57979745-57979764 | Msa1257340:intron | 40.0% |
| !!! | TCCAAGCATCAGTTTTGGAA+AGG | - | chr8_2:57979750-57979769 | Msa1257340:intron | 40.0% |
| ACCTTTCCAAAACTGATGCT+TGG | + | chr8_2:57979754-57979773 | None:intergenic | 40.0% | |
| ATTTCACCAGTCAATACCTG+GGG | - | chr8_2:57980009-57980028 | Msa1257340:intron | 40.0% | |
| GATGTTGAGGTTACAGTTCT+TGG | - | chr8_2:57980059-57980078 | Msa1257340:intron | 40.0% | |
| CATAGATTGCAGGATTGACA+AGG | + | chr8_2:57980199-57980218 | None:intergenic | 40.0% | |
| AAACTTACAAGGAGGAGGAT+GGG | + | chr8_2:57980521-57980540 | None:intergenic | 40.0% | |
| CATCTACCAAACTTACAAGG+AGG | + | chr8_2:57980529-57980548 | None:intergenic | 40.0% | |
| CTCCTTGTAAGTTTGGTAGA+TGG | - | chr8_2:57980527-57980546 | Msa1257340:intron | 40.0% | |
| CTCCATCTACCAAACTTACA+AGG | + | chr8_2:57980532-57980551 | None:intergenic | 40.0% | |
| CTTGTAAGTTTGGTAGATGG+AGG | - | chr8_2:57980530-57980549 | Msa1257340:intron | 40.0% | |
| ! | GTCATAAGACTAGCTGTAGA+TGG | - | chr8_2:57980552-57980571 | Msa1257340:exon | 40.0% |
| GCCATGGATACCAAAGATGA+CGG | - | chr8_2:57978088-57978107 | Msa1257340:three_prime_UTR | 45.0% | |
| ACCGTCATCTTTGGTATCCA+TGG | + | chr8_2:57978092-57978111 | Msa1257330:CDS | 45.0% | |
| GAGGAACAAACCGTCATCTT+TGG | + | chr8_2:57978101-57978120 | Msa1257330:CDS | 45.0% | |
| CTACCGAATAAAGGAGAGAG+AGG | + | chr8_2:57978120-57978139 | Msa1257330:CDS | 45.0% | |
| GCCATGGATACCAAAGATGA+CGG | - | chr8_2:57978088-57978107 | Msa1257340:three_prime_UTR | 45.0% | |
| ACCGTCATCTTTGGTATCCA+TGG | + | chr8_2:57978092-57978111 | Msa1257330:CDS | 45.0% | |
| GAGGAACAAACCGTCATCTT+TGG | + | chr8_2:57978101-57978120 | Msa1257330:CDS | 45.0% | |
| CTACCGAATAAAGGAGAGAG+AGG | + | chr8_2:57978120-57978139 | Msa1257330:CDS | 45.0% | |
| ! | ATTTGTTTGAGTAGGGCGTC+TGG | + | chr8_2:57978571-57978590 | Msa1257330:three_prime_UTR | 45.0% |
| ACGCCCTACTCAAACAAATC+TGG | - | chr8_2:57978572-57978591 | Msa1257340:CDS | 45.0% | |
| GAATCAAGCTCACTTCATCC+TGG | - | chr8_2:57978965-57978984 | Msa1257340:CDS | 45.0% | |
| AAGCTCACTTCATCCTGGTT+GGG | - | chr8_2:57978970-57978989 | Msa1257340:CDS | 45.0% | |
| ! | GACAACTACCTAGTTCTCCA+AGG | - | chr8_2:57979037-57979056 | Msa1257340:intron | 45.0% |
| CCCAGATTGAAATCCTTGAG+AGG | + | chr8_2:57979258-57979277 | None:intergenic | 45.0% | |
| !! | GGGCTCTAAAGGTTATCTAC+TGG | - | chr8_2:57979275-57979294 | Msa1257340:CDS | 45.0% |
| TCTCCCATACATGCTTGTAG+GGG | + | chr8_2:57979392-57979411 | None:intergenic | 45.0% | |
| ! | CGAGTCAGTACCTTTTCCTT+TGG | + | chr8_2:57979625-57979644 | None:intergenic | 45.0% |
| AGTGCCTCAAGTCATGAACA+TGG | - | chr8_2:57979960-57979979 | Msa1257340:CDS | 45.0% | |
| TGTGCCATGTTCATGACTTG+AGG | + | chr8_2:57979967-57979986 | None:intergenic | 45.0% | |
| !! | TAGATACCCCAGGTATTGAC+TGG | + | chr8_2:57980018-57980037 | None:intergenic | 45.0% |
| ! | ATACCTGGGGTATCTAGTGA+AGG | - | chr8_2:57980022-57980041 | Msa1257340:intron | 45.0% |
| TGAGGTTACAGTTCTTGGAG+TGG | - | chr8_2:57980064-57980083 | Msa1257340:intron | 45.0% | |
| !! | TGTTAAGAGTAGCGGACTAG+CGG | + | chr8_2:57980259-57980278 | None:intergenic | 45.0% |
| CAAACTTACAAGGAGGAGGA+TGG | + | chr8_2:57980522-57980541 | None:intergenic | 45.0% | |
| CATCCTCCTCCTTGTAAGTT+TGG | - | chr8_2:57980520-57980539 | Msa1257340:intron | 45.0% | |
| CTACCAAACTTACAAGGAGG+AGG | + | chr8_2:57980526-57980545 | None:intergenic | 45.0% | |
| !! | TGAATATATATTAAAAAAAA+AGG | + | chr8_2:57979070-57979089 | Msa1257330:three_prime_UTR | 5.0% |
| ! | GAATCGGGGAAGTTTGAAGC+TGG | - | chr8_2:57978747-57978766 | Msa1257340:intron | 50.0% |
| TTGAAGCTGGAGGCCACAAA+TGG | - | chr8_2:57978760-57978779 | Msa1257340:intron | 50.0% | |
| CAAGCTCACTTCATCCTGGT+TGG | - | chr8_2:57978969-57978988 | Msa1257340:CDS | 50.0% | |
| CCATACATGCTTGTAGGGGA+GGG | + | chr8_2:57979388-57979407 | None:intergenic | 50.0% | |
| CCTCCCCTACAAGCATGTAT+GGG | - | chr8_2:57979386-57979405 | Msa1257340:CDS | 50.0% | |
| TGTCCTTCACTAGATACCCC+AGG | + | chr8_2:57980028-57980047 | None:intergenic | 50.0% | |
| ! | TCGGGGAAGTTTGAAGCTGG+AGG | - | chr8_2:57978750-57978769 | Msa1257340:intron | 55.0% |
| CCCTCCCCTACAAGCATGTA+TGG | - | chr8_2:57979385-57979404 | Msa1257340:CDS | 55.0% | |
| CCCATACATGCTTGTAGGGG+AGG | + | chr8_2:57979389-57979408 | None:intergenic | 55.0% | |
| ! | AACCTGGGGGGATTGCTGTT+GGG | + | chr8_2:57979683-57979702 | None:intergenic | 55.0% |
| AACCCAACAGCAATCCCCCC+AGG | - | chr8_2:57979678-57979697 | Msa1257340:CDS | 60.0% | |
| GAACCTGGGGGGATTGCTGT+TGG | + | chr8_2:57979684-57979703 | None:intergenic | 60.0% | |
| !! | GAGTAGCGGACTAGCGGACT+TGG | + | chr8_2:57980253-57980272 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 57978034 | 57980613 | 57978034 | ID=Msa1257340;Name=Msa1257340 |
| chr8_2 | mRNA | 57978034 | 57980613 | 57978034 | ID=Msa1257340-mRNA-1;Parent=Msa1257340;Name=Msa1257340-mRNA-1;_AED=0.11;_eAED=0.11;_QI=57|1|1|1|0.8|0.83|6|510|311 |
| chr8_2 | exon | 57978034 | 57978701 | 57978034 | ID=Msa1257340-mRNA-1:exon:17872;Parent=Msa1257340-mRNA-1 |
| chr8_2 | exon | 57978876 | 57979042 | 57978876 | ID=Msa1257340-mRNA-1:exon:17871;Parent=Msa1257340-mRNA-1 |
| chr8_2 | exon | 57979166 | 57979457 | 57979166 | ID=Msa1257340-mRNA-1:exon:17870;Parent=Msa1257340-mRNA-1 |
| chr8_2 | exon | 57979589 | 57979758 | 57979589 | ID=Msa1257340-mRNA-1:exon:17869;Parent=Msa1257340-mRNA-1 |
| chr8_2 | exon | 57979866 | 57979995 | 57979866 | ID=Msa1257340-mRNA-1:exon:17868;Parent=Msa1257340-mRNA-1 |
| chr8_2 | exon | 57980538 | 57980613 | 57980538 | ID=Msa1257340-mRNA-1:exon:17867;Parent=Msa1257340-mRNA-1 |
| chr8_2 | five_prime_UTR | 57980557 | 57980613 | 57980557 | ID=Msa1257340-mRNA-1:five_prime_utr;Parent=Msa1257340-mRNA-1 |
| chr8_2 | CDS | 57980538 | 57980556 | 57980538 | ID=Msa1257340-mRNA-1:cds;Parent=Msa1257340-mRNA-1 |
| chr8_2 | CDS | 57979866 | 57979995 | 57979866 | ID=Msa1257340-mRNA-1:cds;Parent=Msa1257340-mRNA-1 |
| chr8_2 | CDS | 57979589 | 57979758 | 57979589 | ID=Msa1257340-mRNA-1:cds;Parent=Msa1257340-mRNA-1 |
| chr8_2 | CDS | 57979166 | 57979457 | 57979166 | ID=Msa1257340-mRNA-1:cds;Parent=Msa1257340-mRNA-1 |
| chr8_2 | CDS | 57978876 | 57979042 | 57978876 | ID=Msa1257340-mRNA-1:cds;Parent=Msa1257340-mRNA-1 |
| chr8_2 | CDS | 57978544 | 57978701 | 57978544 | ID=Msa1257340-mRNA-1:cds;Parent=Msa1257340-mRNA-1 |
| chr8_2 | three_prime_UTR | 57978034 | 57978543 | 57978034 | ID=Msa1257340-mRNA-1:three_prime_utr;Parent=Msa1257340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
