Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782750 | XP_003617058.2 | 94.946 | 277 | 6 | 2 | 1 | 277 | 1 | 269 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782750 | G7KHG5 | 94.946 | 277 | 6 | 2 | 1 | 277 | 1 | 269 | 0.0 | 527 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0782750 | 0.888352 | 6.374327e-73 | -8.615850e-47 |
| Msa0029970 | Msa0782750 | 0.839307 | 1.714103e-57 | -8.615850e-47 |
| Msa0029990 | Msa0782750 | 0.820412 | 6.953495e-53 | -8.615850e-47 |
| Msa0064120 | Msa0782750 | 0.876081 | 1.853753e-68 | -8.615850e-47 |
| Msa0071840 | Msa0782750 | 0.819380 | 1.197369e-52 | -8.615850e-47 |
| Msa0071850 | Msa0782750 | 0.845949 | 2.951400e-59 | -8.615850e-47 |
| Msa0071860 | Msa0782750 | 0.836735 | 7.863721e-57 | -8.615850e-47 |
| Msa0071880 | Msa0782750 | 0.805017 | 1.635399e-49 | -8.615850e-47 |
| Msa0077340 | Msa0782750 | 0.812182 | 4.821770e-51 | -8.615850e-47 |
| Msa0094740 | Msa0782750 | 0.813567 | 2.397591e-51 | -8.615850e-47 |
| Msa0108880 | Msa0782750 | 0.879192 | 1.522695e-69 | -8.615850e-47 |
| Msa0609300 | Msa0782750 | 0.800673 | 1.290697e-48 | -8.615850e-47 |
| Msa0674480 | Msa0782750 | 0.816056 | 6.731592e-52 | -8.615850e-47 |
| Msa0691910 | Msa0782750 | 0.800763 | 1.237434e-48 | -8.615850e-47 |
| Msa0699840 | Msa0782750 | 0.807095 | 5.974427e-50 | -8.615850e-47 |
| Msa0736440 | Msa0782750 | 0.816523 | 5.292421e-52 | -8.615850e-47 |
| Msa0738700 | Msa0782750 | 0.832952 | 7.046910e-56 | -8.615850e-47 |
| Msa0740090 | Msa0782750 | 0.941792 | 2.240195e-101 | -8.615850e-47 |
| Msa0740100 | Msa0782750 | 0.808123 | 3.614650e-50 | -8.615850e-47 |
| Msa0742650 | Msa0782750 | 0.805133 | 1.546458e-49 | -8.615850e-47 |
| Msa0782750 | Msa0783850 | 0.806411 | 8.335347e-50 | -8.615850e-47 |
| Msa0782750 | Msa0800140 | 0.814909 | 1.211672e-51 | -8.615850e-47 |
| Msa0782750 | Msa0800170 | 0.809713 | 1.651852e-50 | -8.615850e-47 |
| Msa0782750 | Msa0800200 | 0.815769 | 7.802231e-52 | -8.615850e-47 |
| Msa0782750 | Msa0820380 | 0.976150 | 2.807190e-141 | -8.615850e-47 |
| Msa0782750 | Msa0820390 | 0.809593 | 1.752598e-50 | -8.615850e-47 |
| Msa0782750 | Msa0829300 | 0.805389 | 1.366672e-49 | -8.615850e-47 |
| Msa0782750 | Msa0829330 | 0.806221 | 9.141257e-50 | -8.615850e-47 |
| Msa0782750 | Msa0849650 | 0.802088 | 6.621072e-49 | -8.615850e-47 |
| Msa0782750 | Msa0859290 | 0.801816 | 7.530664e-49 | -8.615850e-47 |
| Msa0782750 | Msa0860790 | 0.866304 | 3.143666e-65 | -8.615850e-47 |
| Msa0782750 | Msa1014320 | 0.862634 | 4.410292e-64 | -8.615850e-47 |
| Msa0782750 | Msa1021780 | 0.815346 | 9.690827e-52 | -8.615850e-47 |
| Msa0782750 | Msa1040150 | 0.807092 | 5.983319e-50 | -8.615850e-47 |
| Msa0782750 | Msa1055310 | 0.854092 | 1.549339e-61 | -8.615850e-47 |
| Msa0782750 | Msa1125250 | 0.841691 | 4.074458e-58 | -8.615850e-47 |
| Msa0782750 | Msa1257340 | 0.817328 | 3.490400e-52 | -8.615850e-47 |
| Msa0782750 | Msa1262860 | 0.806606 | 7.580613e-50 | -8.615850e-47 |
| Msa0782750 | Msa1268380 | 0.804776 | 1.836029e-49 | -8.615850e-47 |
| Msa0782750 | Msa1268410 | 0.807464 | 4.991133e-50 | -8.615850e-47 |
| Msa0782750 | Msa1284120 | 0.815852 | 7.475591e-52 | -8.615850e-47 |
| Msa0782750 | Msa1290380 | 0.814158 | 1.776844e-51 | -8.615850e-47 |
| Msa0782750 | Msa1290440 | 0.810496 | 1.119671e-50 | -8.615850e-47 |
| Msa0782750 | Msa1311180 | 0.815209 | 1.039182e-51 | -8.615850e-47 |
| Msa0782750 | Msa1405460 | 0.814066 | 1.861480e-51 | -8.615850e-47 |
| Msa0782750 | Msa1408390 | 0.801404 | 9.148915e-49 | -8.615850e-47 |
| Msa0782750 | Msa1415540 | 0.828943 | 6.788071e-55 | -8.615850e-47 |
| Msa0782750 | Msa1429860 | 0.834949 | 2.229736e-56 | -8.615850e-47 |
| Msa0782750 | Msa1435630 | 0.830648 | 2.608996e-55 | -8.615850e-47 |
| Msa0782750 | Msa1459360 | 0.803521 | 3.351034e-49 | -8.615850e-47 |
| Msa0782750 | Msa1464090 | 0.806562 | 7.745312e-50 | -8.615850e-47 |
| Msa0125200 | Msa0782750 | 0.826301 | 2.924513e-54 | -8.615850e-47 |
| Msa0125210 | Msa0782750 | 0.820766 | 5.766350e-53 | -8.615850e-47 |
| Msa0155180 | Msa0782750 | 0.855784 | 5.001174e-62 | -8.615850e-47 |
| Msa0192910 | Msa0782750 | 0.800943 | 1.136973e-48 | -8.615850e-47 |
| Msa0382530 | Msa0782750 | 0.830312 | 3.153199e-55 | -8.615850e-47 |
| Msa0405680 | Msa0782750 | 0.806053 | 9.916040e-50 | -8.615850e-47 |
| Msa0415610 | Msa0782750 | 0.851460 | 8.751321e-61 | -8.615850e-47 |
| Msa0418970 | Msa0782750 | 0.810017 | 1.420762e-50 | -8.615850e-47 |
| Msa0432320 | Msa0782750 | 0.825051 | 5.786995e-54 | -8.615850e-47 |
| Msa0451170 | Msa0782750 | 0.814045 | 1.881953e-51 | -8.615850e-47 |
| Msa0460550 | Msa0782750 | 0.816913 | 4.328265e-52 | -8.615850e-47 |
| Msa0460630 | Msa0782750 | 0.847386 | 1.194759e-59 | -8.615850e-47 |
| Msa0471460 | Msa0782750 | 0.808118 | 3.623853e-50 | -8.615850e-47 |
| Msa0342840 | Msa0782750 | 0.825669 | 4.131925e-54 | -8.615850e-47 |
| Msa0359010 | Msa0782750 | 0.815994 | 6.950128e-52 | -8.615850e-47 |
| Msa0525210 | Msa0782750 | 0.832119 | 1.133964e-55 | -8.615850e-47 |
| Msa0528570 | Msa0782750 | 0.824851 | 6.453129e-54 | -8.615850e-47 |
| Msa0529030 | Msa0782750 | 0.814824 | 1.265336e-51 | -8.615850e-47 |
| Msa0562620 | Msa0782750 | 0.812135 | 4.936373e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782750 | MtrunA17_Chr5g0440311 | 94.946 | 277 | 6 | 2 | 1 | 277 | 1 | 269 | 0.0 | 527 |
| Msa0782750 | MtrunA17_Chr5g0440321 | 36.170 | 282 | 143 | 9 | 1 | 264 | 1 | 263 | 2.48e-39 | 138 |
| Msa0782750 | MtrunA17_Chr5g0440291 | 45.029 | 171 | 83 | 4 | 1 | 164 | 3 | 169 | 1.01e-34 | 125 |
| Msa0782750 | MtrunA17_Chr6g0481571 | 43.158 | 95 | 54 | 0 | 5 | 99 | 6 | 100 | 4.35e-19 | 82.0 |
| Msa0782750 | MtrunA17_Chr7g0253661 | 35.417 | 96 | 62 | 0 | 6 | 101 | 4 | 99 | 3.21e-17 | 78.2 |
| Msa0782750 | MtrunA17_Chr4g0060201 | 37.234 | 94 | 59 | 0 | 12 | 105 | 21 | 114 | 1.09e-13 | 69.3 |
| Msa0782750 | MtrunA17_Chr3g0078561 | 36.735 | 98 | 60 | 2 | 4 | 99 | 11 | 108 | 1.14e-13 | 70.5 |
| Msa0782750 | MtrunA17_Chr8g0356011 | 39.286 | 84 | 50 | 1 | 11 | 93 | 22 | 105 | 6.71e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782750 | AT2G27140.1 | 29.956 | 227 | 147 | 4 | 6 | 232 | 7 | 221 | 1.86e-20 | 87.8 |
| Msa0782750 | AT5G20970.1 | 42.000 | 100 | 56 | 1 | 10 | 107 | 7 | 106 | 1.89e-16 | 77.4 |
Find 59 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCATTCCATTCATGATA+TGG | 0.231919 | 5_2:-66068684 | None:intergenic |
| CACCAAAACCAAAACCTAAT+TGG | 0.259644 | 5_2:-66069893 | None:intergenic |
| GATAAGGATGTTAACCAATT+AGG | 0.278710 | 5_2:+66069879 | Msa0782750:CDS |
| TGTGGCATCCTTGTTGGTTT+TGG | 0.279792 | 5_2:+66069956 | Msa0782750:CDS |
| ACCAATAACTTCCCCTTCTT+AGG | 0.291447 | 5_2:-66069924 | None:intergenic |
| TTTGTGGCATTGAAGATTCT+TGG | 0.306163 | 5_2:-66069575 | None:intergenic |
| GTCTCACAATATGGAGGAAT+TGG | 0.306295 | 5_2:-66069444 | None:intergenic |
| GACAAGGGATTGAGAATATA+TGG | 0.314294 | 5_2:+66069400 | Msa0782750:CDS |
| ACGTCATTGGTCTCACAATA+TGG | 0.322478 | 5_2:-66069453 | None:intergenic |
| GCCTAAGAAGGGGAAGTTAT+TGG | 0.330941 | 5_2:+66069923 | Msa0782750:CDS |
| TTGTGGCATTGAAGATTCTT+GGG | 0.338711 | 5_2:-66069574 | None:intergenic |
| TGTGCTTGTGTTGGTGCCTT+AGG | 0.347331 | 5_2:-66069612 | None:intergenic |
| GATGTTAACCAATTAGGTTT+TGG | 0.362529 | 5_2:+66069885 | Msa0782750:CDS |
| GAGAATATATGGCATCGTTT+TGG | 0.366522 | 5_2:+66069411 | Msa0782750:CDS |
| TTAGCTGGAGTGATTAGCTT+TGG | 0.374539 | 5_2:-66069516 | None:intergenic |
| TCTTGGGGTGGATTTGTGAT+AGG | 0.374810 | 5_2:-66069558 | None:intergenic |
| TGTTCTTGAGGCTTATTAGC+TGG | 0.378209 | 5_2:-66069531 | None:intergenic |
| GTCTTTCACAATTGATCCTT+AGG | 0.382931 | 5_2:-66069380 | None:intergenic |
| TATTAAAACTGCTGAGGGTA+AGG | 0.412039 | 5_2:+66069779 | Msa0782750:CDS |
| TTTGGCAAGTATGGATCAAA+AGG | 0.417877 | 5_2:+66068623 | Msa0782750:exon |
| TATGATTGTGGCATCCTTGT+TGG | 0.435298 | 5_2:+66069950 | Msa0782750:CDS |
| TTTATAATACATGTGTTAAG+AGG | 0.436463 | 5_2:-66070205 | None:intergenic |
| AAATCTTTGTAAACACGATC+AGG | 0.439333 | 5_2:-66068657 | None:intergenic |
| TTTGAGATCAAAGGATGATA+AGG | 0.439999 | 5_2:+66069863 | Msa0782750:CDS |
| ATTTGCAACCATATCATGAA+TGG | 0.458815 | 5_2:+66068676 | Msa0782750:CDS |
| TAGCACTCCACGCTCAAACT+TGG | 0.459332 | 5_2:-66069481 | None:intergenic |
| AAACTTGGCACTCACGTCAT+TGG | 0.464817 | 5_2:-66069466 | None:intergenic |
| TGGTGACATAAGGCCTAAGA+AGG | 0.480818 | 5_2:+66069911 | Msa0782750:CDS |
| GTGATAGGTTCTTGTTCTTG+AGG | 0.481402 | 5_2:-66069543 | None:intergenic |
| TAATATAAGTTTGAGATCAA+AGG | 0.489862 | 5_2:+66069854 | Msa0782750:CDS |
| AGAGTGCAAGTGACTTCAAA+AGG | 0.504816 | 5_2:+66069354 | Msa0782750:CDS |
| TCAACCACTTGTGCTTGTGT+TGG | 0.527170 | 5_2:-66069621 | None:intergenic |
| GAGGACTAATGATGAGTTGT+TGG | 0.528622 | 5_2:+66069743 | Msa0782750:CDS |
| GGCATTGAAGATTCTTGGGG+TGG | 0.533531 | 5_2:-66069570 | None:intergenic |
| AAAACTTAGTGATGAACCTA+AGG | 0.543043 | 5_2:+66069596 | Msa0782750:CDS |
| ATCATCTCAAGGAGAATCAA+AGG | 0.545186 | 5_2:+66070028 | Msa0782750:CDS |
| AGTTGAAAATGATCAAAAGA+AGG | 0.550917 | 5_2:+66069719 | Msa0782750:CDS |
| ATTAAAACTGCTGAGGGTAA+GGG | 0.552764 | 5_2:+66069780 | Msa0782750:CDS |
| TGACTTCAAAAGGTGTCCTA+AGG | 0.553657 | 5_2:+66069364 | Msa0782750:CDS |
| GTTATTGGTGAATATGATTG+TGG | 0.556259 | 5_2:+66069938 | Msa0782750:CDS |
| GAAGTTATTAAAACTGCTGA+GGG | 0.577721 | 5_2:+66069774 | Msa0782750:CDS |
| AGAAGTTATTAAAACTGCTG+AGG | 0.579114 | 5_2:+66069773 | Msa0782750:CDS |
| CCCAAGCACCAAAACCAACA+AGG | 0.596289 | 5_2:-66069964 | None:intergenic |
| GGCACCAACACAAGCACAAG+TGG | 0.599712 | 5_2:+66069617 | Msa0782750:CDS |
| AAAATGATCAAAAGAAGGTG+AGG | 0.604262 | 5_2:+66069724 | Msa0782750:CDS |
| TGACACAAAGATTGAAAACA+AGG | 0.614384 | 5_2:+66069820 | Msa0782750:CDS |
| ACTCTTGTTCTAATGCTACC+AGG | 0.617254 | 5_2:+66068720 | Msa0782750:CDS |
| TGTGGCATTGAAGATTCTTG+GGG | 0.617922 | 5_2:-66069573 | None:intergenic |
| AGGATCAATTGTGAAAGACA+AGG | 0.627967 | 5_2:+66069384 | Msa0782750:CDS |
| GGATCAATTGTGAAAGACAA+GGG | 0.637612 | 5_2:+66069385 | Msa0782750:CDS |
| GTGACATAAGGCCTAAGAAG+GGG | 0.654964 | 5_2:+66069913 | Msa0782750:CDS |
| GGTGACATAAGGCCTAAGAA+GGG | 0.663272 | 5_2:+66069912 | Msa0782750:CDS |
| TGGTAGCATTAGAACAAGAG+TGG | 0.670251 | 5_2:-66068718 | None:intergenic |
| GAGGGTAAGGGAAAGAGACA+AGG | 0.675091 | 5_2:+66069792 | Msa0782750:CDS |
| ACAAGTATTAAATATAACAC+CGG | 0.680730 | 5_2:-66070179 | None:intergenic |
| GTGAGTGCCAAGTTTGAGCG+TGG | 0.681150 | 5_2:+66069474 | Msa0782750:CDS |
| AACAAGAACAGGATTCACAA+AGG | 0.687428 | 5_2:+66069323 | Msa0782750:intron |
| TCATTGGTCTCACAATATGG+AGG | 0.693475 | 5_2:-66069450 | None:intergenic |
| GAAGATTGATCAAATCACAC+CGG | 0.707478 | 5_2:+66070160 | Msa0782750:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTTTTTCATCAATAAT+TGG | - | chr5_2:66069681-66069700 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTTCATCAATAAT+TGG | - | chr5_2:66069681-66069700 | None:intergenic | 15.0% |
| !!! | GTTGATATTATTTTGTGTTT+TGG | - | chr5_2:66068591-66068610 | None:intergenic | 20.0% |
| !!! | ATCAACAACAAAGAAATTTT+TGG | + | chr5_2:66068605-66068624 | Msa0782750:five_prime_UTR | 20.0% |
| !! | AAATATTTGACAACACATTT+CGG | - | chr5_2:66069233-66069252 | None:intergenic | 20.0% |
| !! | ATATAGAAGAAAATGAGAAA+TGG | - | chr5_2:66069281-66069300 | None:intergenic | 20.0% |
| !!! | ATAATTGGTTCTTTTTTCTT+TGG | - | chr5_2:66069666-66069685 | None:intergenic | 20.0% |
| !!! | TAATATAAGTTTGAGATCAA+AGG | + | chr5_2:66069854-66069873 | Msa0782750:CDS | 20.0% |
| !! | ACAAGTATTAAATATAACAC+CGG | - | chr5_2:66070182-66070201 | None:intergenic | 20.0% |
| !! | TTTATAATACATGTGTTAAG+AGG | - | chr5_2:66070208-66070227 | None:intergenic | 20.0% |
| !!! | GTTGATATTATTTTGTGTTT+TGG | - | chr5_2:66068591-66068610 | None:intergenic | 20.0% |
| !!! | ATCAACAACAAAGAAATTTT+TGG | + | chr5_2:66068605-66068624 | Msa0782750:five_prime_UTR | 20.0% |
| !! | AAATATTTGACAACACATTT+CGG | - | chr5_2:66069233-66069252 | None:intergenic | 20.0% |
| !! | ATATAGAAGAAAATGAGAAA+TGG | - | chr5_2:66069281-66069300 | None:intergenic | 20.0% |
| !!! | ATAATTGGTTCTTTTTTCTT+TGG | - | chr5_2:66069666-66069685 | None:intergenic | 20.0% |
| !!! | TAATATAAGTTTGAGATCAA+AGG | + | chr5_2:66069854-66069873 | Msa0782750:CDS | 20.0% |
| !! | ACAAGTATTAAATATAACAC+CGG | - | chr5_2:66070182-66070201 | None:intergenic | 20.0% |
| !! | TTTATAATACATGTGTTAAG+AGG | - | chr5_2:66070208-66070227 | None:intergenic | 20.0% |
| !!! | AAAGAAATTTTTGGCAAGTA+TGG | + | chr5_2:66068614-66068633 | Msa0782750:exon | 25.0% |
| ! | GTACATAATATTAGACATTC+AGG | + | chr5_2:66068865-66068884 | Msa0782750:intron | 25.0% |
| ! | AGAGATATTTCATATGTTGA+GGG | + | chr5_2:66068921-66068940 | Msa0782750:intron | 25.0% |
| ! | AGTTGAAAATGATCAAAAGA+AGG | + | chr5_2:66069719-66069738 | Msa0782750:CDS | 25.0% |
| !!! | ATTTTGTGTTTTGGTTCTTT+CGG | - | chr5_2:66068582-66068601 | None:intergenic | 25.0% |
| !!! | AAAGAAATTTTTGGCAAGTA+TGG | + | chr5_2:66068614-66068633 | Msa0782750:exon | 25.0% |
| ! | GTACATAATATTAGACATTC+AGG | + | chr5_2:66068865-66068884 | Msa0782750:intron | 25.0% |
| ! | AGAGATATTTCATATGTTGA+GGG | + | chr5_2:66068921-66068940 | Msa0782750:intron | 25.0% |
| ! | AGTTGAAAATGATCAAAAGA+AGG | + | chr5_2:66069719-66069738 | Msa0782750:CDS | 25.0% |
| AAATCTTTGTAAACACGATC+AGG | - | chr5_2:66068660-66068679 | None:intergenic | 30.0% | |
| ATTTGCAACCATATCATGAA+TGG | + | chr5_2:66068676-66068695 | Msa0782750:CDS | 30.0% | |
| TCTTCATTCCATTCATGATA+TGG | - | chr5_2:66068687-66068706 | None:intergenic | 30.0% | |
| TGCAAAGTTAAACATATACC+TGG | - | chr5_2:66068741-66068760 | None:intergenic | 30.0% | |
| ATAATATTAGACATTCAGGC+CGG | + | chr5_2:66068869-66068888 | Msa0782750:intron | 30.0% | |
| CAGAGATATTTCATATGTTG+AGG | + | chr5_2:66068920-66068939 | Msa0782750:intron | 30.0% | |
| ! | TTTTTGTTCAAAGAGTGATG+CGG | - | chr5_2:66068969-66068988 | None:intergenic | 30.0% |
| ! | TGGTTAGTCATGTTTGATAT+CGG | + | chr5_2:66069093-66069112 | Msa0782750:intron | 30.0% |
| AAAACTTAGTGATGAACCTA+AGG | + | chr5_2:66069596-66069615 | Msa0782750:CDS | 30.0% | |
| AAAATGATCAAAAGAAGGTG+AGG | + | chr5_2:66069724-66069743 | Msa0782750:CDS | 30.0% | |
| AGAAGTTATTAAAACTGCTG+AGG | + | chr5_2:66069773-66069792 | Msa0782750:CDS | 30.0% | |
| GAAGTTATTAAAACTGCTGA+GGG | + | chr5_2:66069774-66069793 | Msa0782750:CDS | 30.0% | |
| TGACACAAAGATTGAAAACA+AGG | + | chr5_2:66069820-66069839 | Msa0782750:CDS | 30.0% | |
| ! | TTTGAGATCAAAGGATGATA+AGG | + | chr5_2:66069863-66069882 | Msa0782750:CDS | 30.0% |
| GATAAGGATGTTAACCAATT+AGG | + | chr5_2:66069879-66069898 | Msa0782750:CDS | 30.0% | |
| ! | GATGTTAACCAATTAGGTTT+TGG | + | chr5_2:66069885-66069904 | Msa0782750:CDS | 30.0% |
| !!! | AACCAATTAGGTTTTGGTTT+TGG | + | chr5_2:66069891-66069910 | Msa0782750:CDS | 30.0% |
| GTTATTGGTGAATATGATTG+TGG | + | chr5_2:66069938-66069957 | Msa0782750:CDS | 30.0% | |
| TGTATGTCAAAAATGCATTG+TGG | + | chr5_2:66069988-66070007 | Msa0782750:CDS | 30.0% | |
| !!! | TTTTGTGTTTTGGTTCTTTC+GGG | - | chr5_2:66068581-66068600 | None:intergenic | 30.0% |
| AAATCTTTGTAAACACGATC+AGG | - | chr5_2:66068660-66068679 | None:intergenic | 30.0% | |
| ATTTGCAACCATATCATGAA+TGG | + | chr5_2:66068676-66068695 | Msa0782750:CDS | 30.0% | |
| TCTTCATTCCATTCATGATA+TGG | - | chr5_2:66068687-66068706 | None:intergenic | 30.0% | |
| TGCAAAGTTAAACATATACC+TGG | - | chr5_2:66068741-66068760 | None:intergenic | 30.0% | |
| ATAATATTAGACATTCAGGC+CGG | + | chr5_2:66068869-66068888 | Msa0782750:intron | 30.0% | |
| CAGAGATATTTCATATGTTG+AGG | + | chr5_2:66068920-66068939 | Msa0782750:intron | 30.0% | |
| ! | TTTTTGTTCAAAGAGTGATG+CGG | - | chr5_2:66068969-66068988 | None:intergenic | 30.0% |
| ! | TGGTTAGTCATGTTTGATAT+CGG | + | chr5_2:66069093-66069112 | Msa0782750:intron | 30.0% |
| AAAACTTAGTGATGAACCTA+AGG | + | chr5_2:66069596-66069615 | Msa0782750:CDS | 30.0% | |
| AAAATGATCAAAAGAAGGTG+AGG | + | chr5_2:66069724-66069743 | Msa0782750:CDS | 30.0% | |
| AGAAGTTATTAAAACTGCTG+AGG | + | chr5_2:66069773-66069792 | Msa0782750:CDS | 30.0% | |
| GAAGTTATTAAAACTGCTGA+GGG | + | chr5_2:66069774-66069793 | Msa0782750:CDS | 30.0% | |
| TGACACAAAGATTGAAAACA+AGG | + | chr5_2:66069820-66069839 | Msa0782750:CDS | 30.0% | |
| ! | TTTGAGATCAAAGGATGATA+AGG | + | chr5_2:66069863-66069882 | Msa0782750:CDS | 30.0% |
| GATAAGGATGTTAACCAATT+AGG | + | chr5_2:66069879-66069898 | Msa0782750:CDS | 30.0% | |
| ! | GATGTTAACCAATTAGGTTT+TGG | + | chr5_2:66069885-66069904 | Msa0782750:CDS | 30.0% |
| !!! | AACCAATTAGGTTTTGGTTT+TGG | + | chr5_2:66069891-66069910 | Msa0782750:CDS | 30.0% |
| GTTATTGGTGAATATGATTG+TGG | + | chr5_2:66069938-66069957 | Msa0782750:CDS | 30.0% | |
| TGTATGTCAAAAATGCATTG+TGG | + | chr5_2:66069988-66070007 | Msa0782750:CDS | 30.0% | |
| TTTGGCAAGTATGGATCAAA+AGG | + | chr5_2:66068623-66068642 | Msa0782750:exon | 35.0% | |
| TTTAACGCGATTCAAAATCG+TGG | + | chr5_2:66069073-66069092 | Msa0782750:intron | 35.0% | |
| ! | CTTTCTTTTCCAACAAGAAC+AGG | + | chr5_2:66069312-66069331 | Msa0782750:intron | 35.0% |
| TTTGTGAATCCTGTTCTTGT+TGG | - | chr5_2:66069324-66069343 | None:intergenic | 35.0% | |
| AACAAGAACAGGATTCACAA+AGG | + | chr5_2:66069323-66069342 | Msa0782750:intron | 35.0% | |
| GTCTTTCACAATTGATCCTT+AGG | - | chr5_2:66069383-66069402 | None:intergenic | 35.0% | |
| AGGATCAATTGTGAAAGACA+AGG | + | chr5_2:66069384-66069403 | Msa0782750:CDS | 35.0% | |
| GGATCAATTGTGAAAGACAA+GGG | + | chr5_2:66069385-66069404 | Msa0782750:CDS | 35.0% | |
| GACAAGGGATTGAGAATATA+TGG | + | chr5_2:66069400-66069419 | Msa0782750:CDS | 35.0% | |
| ! | GAGAATATATGGCATCGTTT+TGG | + | chr5_2:66069411-66069430 | Msa0782750:CDS | 35.0% |
| ! | TTGTGGCATTGAAGATTCTT+GGG | - | chr5_2:66069577-66069596 | None:intergenic | 35.0% |
| ! | TTTGTGGCATTGAAGATTCT+TGG | - | chr5_2:66069578-66069597 | None:intergenic | 35.0% |
| ! | GGTTCATCACTAAGTTTTTG+TGG | - | chr5_2:66069594-66069613 | None:intergenic | 35.0% |
| TATTAAAACTGCTGAGGGTA+AGG | + | chr5_2:66069779-66069798 | Msa0782750:CDS | 35.0% | |
| ATTAAAACTGCTGAGGGTAA+GGG | + | chr5_2:66069780-66069799 | Msa0782750:CDS | 35.0% | |
| CACCAAAACCAAAACCTAAT+TGG | - | chr5_2:66069896-66069915 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTTTTGGTGACATA+AGG | + | chr5_2:66069901-66069920 | Msa0782750:CDS | 35.0% |
| TCATCATCATCATCATCTCA+AGG | + | chr5_2:66070017-66070036 | Msa0782750:CDS | 35.0% | |
| ATCATCTCAAGGAGAATCAA+AGG | + | chr5_2:66070028-66070047 | Msa0782750:CDS | 35.0% | |
| GAAGATTGATCAAATCACAC+CGG | + | chr5_2:66070160-66070179 | Msa0782750:three_prime_UTR | 35.0% | |
| TTTGGCAAGTATGGATCAAA+AGG | + | chr5_2:66068623-66068642 | Msa0782750:exon | 35.0% | |
| TTTAACGCGATTCAAAATCG+TGG | + | chr5_2:66069073-66069092 | Msa0782750:intron | 35.0% | |
| ! | CTTTCTTTTCCAACAAGAAC+AGG | + | chr5_2:66069312-66069331 | Msa0782750:intron | 35.0% |
| TTTGTGAATCCTGTTCTTGT+TGG | - | chr5_2:66069324-66069343 | None:intergenic | 35.0% | |
| AACAAGAACAGGATTCACAA+AGG | + | chr5_2:66069323-66069342 | Msa0782750:intron | 35.0% | |
| GTCTTTCACAATTGATCCTT+AGG | - | chr5_2:66069383-66069402 | None:intergenic | 35.0% | |
| AGGATCAATTGTGAAAGACA+AGG | + | chr5_2:66069384-66069403 | Msa0782750:CDS | 35.0% | |
| GGATCAATTGTGAAAGACAA+GGG | + | chr5_2:66069385-66069404 | Msa0782750:CDS | 35.0% | |
| GACAAGGGATTGAGAATATA+TGG | + | chr5_2:66069400-66069419 | Msa0782750:CDS | 35.0% | |
| ! | GAGAATATATGGCATCGTTT+TGG | + | chr5_2:66069411-66069430 | Msa0782750:CDS | 35.0% |
| ! | TTGTGGCATTGAAGATTCTT+GGG | - | chr5_2:66069577-66069596 | None:intergenic | 35.0% |
| ! | TTTGTGGCATTGAAGATTCT+TGG | - | chr5_2:66069578-66069597 | None:intergenic | 35.0% |
| ! | GGTTCATCACTAAGTTTTTG+TGG | - | chr5_2:66069594-66069613 | None:intergenic | 35.0% |
| TATTAAAACTGCTGAGGGTA+AGG | + | chr5_2:66069779-66069798 | Msa0782750:CDS | 35.0% | |
| ATTAAAACTGCTGAGGGTAA+GGG | + | chr5_2:66069780-66069799 | Msa0782750:CDS | 35.0% | |
| CACCAAAACCAAAACCTAAT+TGG | - | chr5_2:66069896-66069915 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTTTTGGTGACATA+AGG | + | chr5_2:66069901-66069920 | Msa0782750:CDS | 35.0% |
| TCATCATCATCATCATCTCA+AGG | + | chr5_2:66070017-66070036 | Msa0782750:CDS | 35.0% | |
| ATCATCTCAAGGAGAATCAA+AGG | + | chr5_2:66070028-66070047 | Msa0782750:CDS | 35.0% | |
| GAAGATTGATCAAATCACAC+CGG | + | chr5_2:66070160-66070179 | Msa0782750:three_prime_UTR | 35.0% | |
| TGGTAGCATTAGAACAAGAG+TGG | - | chr5_2:66068721-66068740 | None:intergenic | 40.0% | |
| ACTCTTGTTCTAATGCTACC+AGG | + | chr5_2:66068720-66068739 | Msa0782750:CDS | 40.0% | |
| ACCATGTGAGTTGTACTTAC+CGG | - | chr5_2:66068891-66068910 | None:intergenic | 40.0% | |
| TTTCATATGTTGAGGGCTTG+AGG | + | chr5_2:66068928-66068947 | Msa0782750:intron | 40.0% | |
| AGAGTGCAAGTGACTTCAAA+AGG | + | chr5_2:66069354-66069373 | Msa0782750:CDS | 40.0% | |
| !! | TGACTTCAAAAGGTGTCCTA+AGG | + | chr5_2:66069364-66069383 | Msa0782750:CDS | 40.0% |
| GTCTCACAATATGGAGGAAT+TGG | - | chr5_2:66069447-66069466 | None:intergenic | 40.0% | |
| ! | TCATTGGTCTCACAATATGG+AGG | - | chr5_2:66069453-66069472 | None:intergenic | 40.0% |
| ! | ACGTCATTGGTCTCACAATA+TGG | - | chr5_2:66069456-66069475 | None:intergenic | 40.0% |
| !! | TTAGCTGGAGTGATTAGCTT+TGG | - | chr5_2:66069519-66069538 | None:intergenic | 40.0% |
| TGTTCTTGAGGCTTATTAGC+TGG | - | chr5_2:66069534-66069553 | None:intergenic | 40.0% | |
| GTGATAGGTTCTTGTTCTTG+AGG | - | chr5_2:66069546-66069565 | None:intergenic | 40.0% | |
| ! | TGTGGCATTGAAGATTCTTG+GGG | - | chr5_2:66069576-66069595 | None:intergenic | 40.0% |
| GAGGACTAATGATGAGTTGT+TGG | + | chr5_2:66069743-66069762 | Msa0782750:CDS | 40.0% | |
| ACCAATAACTTCCCCTTCTT+AGG | - | chr5_2:66069927-66069946 | None:intergenic | 40.0% | |
| TATGATTGTGGCATCCTTGT+TGG | + | chr5_2:66069950-66069969 | Msa0782750:CDS | 40.0% | |
| TGGTAGCATTAGAACAAGAG+TGG | - | chr5_2:66068721-66068740 | None:intergenic | 40.0% | |
| ACTCTTGTTCTAATGCTACC+AGG | + | chr5_2:66068720-66068739 | Msa0782750:CDS | 40.0% | |
| ACCATGTGAGTTGTACTTAC+CGG | - | chr5_2:66068891-66068910 | None:intergenic | 40.0% | |
| TTTCATATGTTGAGGGCTTG+AGG | + | chr5_2:66068928-66068947 | Msa0782750:intron | 40.0% | |
| AGAGTGCAAGTGACTTCAAA+AGG | + | chr5_2:66069354-66069373 | Msa0782750:CDS | 40.0% | |
| !! | TGACTTCAAAAGGTGTCCTA+AGG | + | chr5_2:66069364-66069383 | Msa0782750:CDS | 40.0% |
| GTCTCACAATATGGAGGAAT+TGG | - | chr5_2:66069447-66069466 | None:intergenic | 40.0% | |
| ! | TCATTGGTCTCACAATATGG+AGG | - | chr5_2:66069453-66069472 | None:intergenic | 40.0% |
| ! | ACGTCATTGGTCTCACAATA+TGG | - | chr5_2:66069456-66069475 | None:intergenic | 40.0% |
| !! | TTAGCTGGAGTGATTAGCTT+TGG | - | chr5_2:66069519-66069538 | None:intergenic | 40.0% |
| TGTTCTTGAGGCTTATTAGC+TGG | - | chr5_2:66069534-66069553 | None:intergenic | 40.0% | |
| GTGATAGGTTCTTGTTCTTG+AGG | - | chr5_2:66069546-66069565 | None:intergenic | 40.0% | |
| ! | TGTGGCATTGAAGATTCTTG+GGG | - | chr5_2:66069576-66069595 | None:intergenic | 40.0% |
| GAGGACTAATGATGAGTTGT+TGG | + | chr5_2:66069743-66069762 | Msa0782750:CDS | 40.0% | |
| ACCAATAACTTCCCCTTCTT+AGG | - | chr5_2:66069927-66069946 | None:intergenic | 40.0% | |
| TATGATTGTGGCATCCTTGT+TGG | + | chr5_2:66069950-66069969 | Msa0782750:CDS | 40.0% | |
| AAACTTGGCACTCACGTCAT+TGG | - | chr5_2:66069469-66069488 | None:intergenic | 45.0% | |
| ! | TCTTGGGGTGGATTTGTGAT+AGG | - | chr5_2:66069561-66069580 | None:intergenic | 45.0% |
| TCAACCACTTGTGCTTGTGT+TGG | - | chr5_2:66069624-66069643 | None:intergenic | 45.0% | |
| TGGTGACATAAGGCCTAAGA+AGG | + | chr5_2:66069911-66069930 | Msa0782750:CDS | 45.0% | |
| GGTGACATAAGGCCTAAGAA+GGG | + | chr5_2:66069912-66069931 | Msa0782750:CDS | 45.0% | |
| GTGACATAAGGCCTAAGAAG+GGG | + | chr5_2:66069913-66069932 | Msa0782750:CDS | 45.0% | |
| GCCTAAGAAGGGGAAGTTAT+TGG | + | chr5_2:66069923-66069942 | Msa0782750:CDS | 45.0% | |
| !!! | TGTGGCATCCTTGTTGGTTT+TGG | + | chr5_2:66069956-66069975 | Msa0782750:CDS | 45.0% |
| !!! | TCCTTGTTGGTTTTGGTGCT+TGG | + | chr5_2:66069963-66069982 | Msa0782750:CDS | 45.0% |
| !!! | CCTTGTTGGTTTTGGTGCTT+GGG | + | chr5_2:66069964-66069983 | Msa0782750:CDS | 45.0% |
| !!! | CTTGTTGGTTTTGGTGCTTG+GGG | + | chr5_2:66069965-66069984 | Msa0782750:CDS | 45.0% |
| AAACTTGGCACTCACGTCAT+TGG | - | chr5_2:66069469-66069488 | None:intergenic | 45.0% | |
| ! | TCTTGGGGTGGATTTGTGAT+AGG | - | chr5_2:66069561-66069580 | None:intergenic | 45.0% |
| TCAACCACTTGTGCTTGTGT+TGG | - | chr5_2:66069624-66069643 | None:intergenic | 45.0% | |
| TGGTGACATAAGGCCTAAGA+AGG | + | chr5_2:66069911-66069930 | Msa0782750:CDS | 45.0% | |
| GGTGACATAAGGCCTAAGAA+GGG | + | chr5_2:66069912-66069931 | Msa0782750:CDS | 45.0% | |
| GTGACATAAGGCCTAAGAAG+GGG | + | chr5_2:66069913-66069932 | Msa0782750:CDS | 45.0% | |
| GCCTAAGAAGGGGAAGTTAT+TGG | + | chr5_2:66069923-66069942 | Msa0782750:CDS | 45.0% | |
| !!! | TGTGGCATCCTTGTTGGTTT+TGG | + | chr5_2:66069956-66069975 | Msa0782750:CDS | 45.0% |
| !!! | TCCTTGTTGGTTTTGGTGCT+TGG | + | chr5_2:66069963-66069982 | Msa0782750:CDS | 45.0% |
| !!! | CCTTGTTGGTTTTGGTGCTT+GGG | + | chr5_2:66069964-66069983 | Msa0782750:CDS | 45.0% |
| !!! | CTTGTTGGTTTTGGTGCTTG+GGG | + | chr5_2:66069965-66069984 | Msa0782750:CDS | 45.0% |
| GCCGGTAAGTACAACTCACA+TGG | + | chr5_2:66068887-66068906 | Msa0782750:intron | 50.0% | |
| TAGCACTCCACGCTCAAACT+TGG | - | chr5_2:66069484-66069503 | None:intergenic | 50.0% | |
| ! | GGCATTGAAGATTCTTGGGG+TGG | - | chr5_2:66069573-66069592 | None:intergenic | 50.0% |
| ! | TGTGCTTGTGTTGGTGCCTT+AGG | - | chr5_2:66069615-66069634 | None:intergenic | 50.0% |
| GAGGGTAAGGGAAAGAGACA+AGG | + | chr5_2:66069792-66069811 | Msa0782750:CDS | 50.0% | |
| CCCAAGCACCAAAACCAACA+AGG | - | chr5_2:66069967-66069986 | None:intergenic | 50.0% | |
| GCCGGTAAGTACAACTCACA+TGG | + | chr5_2:66068887-66068906 | Msa0782750:intron | 50.0% | |
| TAGCACTCCACGCTCAAACT+TGG | - | chr5_2:66069484-66069503 | None:intergenic | 50.0% | |
| ! | GGCATTGAAGATTCTTGGGG+TGG | - | chr5_2:66069573-66069592 | None:intergenic | 50.0% |
| ! | TGTGCTTGTGTTGGTGCCTT+AGG | - | chr5_2:66069615-66069634 | None:intergenic | 50.0% |
| GAGGGTAAGGGAAAGAGACA+AGG | + | chr5_2:66069792-66069811 | Msa0782750:CDS | 50.0% | |
| CCCAAGCACCAAAACCAACA+AGG | - | chr5_2:66069967-66069986 | None:intergenic | 50.0% | |
| TATGTTGAGGGCTTGAGGCG+CGG | + | chr5_2:66068933-66068952 | Msa0782750:intron | 55.0% | |
| GTGAGTGCCAAGTTTGAGCG+TGG | + | chr5_2:66069474-66069493 | Msa0782750:CDS | 55.0% | |
| GGCACCAACACAAGCACAAG+TGG | + | chr5_2:66069617-66069636 | Msa0782750:CDS | 55.0% | |
| TATGTTGAGGGCTTGAGGCG+CGG | + | chr5_2:66068933-66068952 | Msa0782750:intron | 55.0% | |
| GTGAGTGCCAAGTTTGAGCG+TGG | + | chr5_2:66069474-66069493 | Msa0782750:CDS | 55.0% | |
| GGCACCAACACAAGCACAAG+TGG | + | chr5_2:66069617-66069636 | Msa0782750:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 66068581 | 66070271 | 66068581 | ID=Msa0782750;Name=Msa0782750 |
| chr5_2 | mRNA | 66068581 | 66070271 | 66068581 | ID=Msa0782750-mRNA-1;Parent=Msa0782750;Name=Msa0782750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=52|1|1|1|1|1|2|213|277 |
| chr5_2 | exon | 66068581 | 66068741 | 66068581 | ID=Msa0782750-mRNA-1:exon:19855;Parent=Msa0782750-mRNA-1 |
| chr5_2 | exon | 66069334 | 66070271 | 66069334 | ID=Msa0782750-mRNA-1:exon:19856;Parent=Msa0782750-mRNA-1 |
| chr5_2 | five_prime_UTR | 66068581 | 66068632 | 66068581 | ID=Msa0782750-mRNA-1:five_prime_utr;Parent=Msa0782750-mRNA-1 |
| chr5_2 | CDS | 66068633 | 66068741 | 66068633 | ID=Msa0782750-mRNA-1:cds;Parent=Msa0782750-mRNA-1 |
| chr5_2 | CDS | 66069334 | 66070058 | 66069334 | ID=Msa0782750-mRNA-1:cds;Parent=Msa0782750-mRNA-1 |
| chr5_2 | three_prime_UTR | 66070059 | 66070271 | 66070059 | ID=Msa0782750-mRNA-1:three_prime_utr;Parent=Msa0782750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
