Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460630 | XP_003600643.1 | 98.575 | 842 | 12 | 0 | 1 | 842 | 1 | 842 | 0.0 | 1734 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460630 | sp|Q9FX32|SUS6_ARATH | 69.656 | 814 | 244 | 1 | 2 | 815 | 4 | 814 | 0.0 | 1218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460630 | G7J800 | 98.575 | 842 | 12 | 0 | 1 | 842 | 1 | 842 | 0.0 | 1734 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0460630 | 0.864498 | 1.164850e-64 | -8.615850e-47 |
| Msa0029970 | Msa0460630 | 0.808978 | 2.374121e-50 | -8.615850e-47 |
| Msa0034210 | Msa0460630 | 0.814216 | 1.724634e-51 | -8.615850e-47 |
| Msa0043290 | Msa0460630 | 0.800089 | 1.697346e-48 | -8.615850e-47 |
| Msa0064120 | Msa0460630 | 0.840642 | 7.688151e-58 | -8.615850e-47 |
| Msa0071850 | Msa0460630 | 0.828805 | 7.328619e-55 | -8.615850e-47 |
| Msa0071860 | Msa0460630 | 0.828208 | 1.021513e-54 | -8.615850e-47 |
| Msa0094740 | Msa0460630 | 0.818529 | 1.869049e-52 | -8.615850e-47 |
| Msa0108880 | Msa0460630 | 0.875965 | 2.032836e-68 | -8.615850e-47 |
| Msa0125200 | Msa0460630 | 0.825909 | 3.624573e-54 | -8.615850e-47 |
| Msa0125210 | Msa0460630 | 0.841004 | 6.178718e-58 | -8.615850e-47 |
| Msa0128310 | Msa0460630 | 0.816273 | 6.022003e-52 | -8.615850e-47 |
| Msa0137210 | Msa0460630 | 0.832839 | 7.517720e-56 | -8.615850e-47 |
| Msa0155180 | Msa0460630 | 0.816970 | 4.202791e-52 | -8.615850e-47 |
| Msa0174440 | Msa0460630 | 0.811414 | 7.085580e-51 | -8.615850e-47 |
| Msa0174450 | Msa0460630 | 0.814913 | 1.209183e-51 | -8.615850e-47 |
| Msa0191020 | Msa0460630 | 0.812124 | 4.964439e-51 | -8.615850e-47 |
| Msa0205570 | Msa0460630 | 0.812051 | 5.150293e-51 | -8.615850e-47 |
| Msa0213030 | Msa0460630 | 0.803727 | 3.035891e-49 | -8.615850e-47 |
| Msa0233320 | Msa0460630 | 0.812332 | 4.471076e-51 | -8.615850e-47 |
| Msa0367830 | Msa0460630 | 0.829615 | 4.661769e-55 | -8.615850e-47 |
| Msa0382530 | Msa0460630 | 0.804161 | 2.466558e-49 | -8.615850e-47 |
| Msa0393340 | Msa0460630 | 0.813032 | 3.142112e-51 | -8.615850e-47 |
| Msa0405680 | Msa0460630 | 0.809863 | 1.533294e-50 | -8.615850e-47 |
| Msa0415610 | Msa0460630 | 0.937386 | 3.767252e-98 | -8.615850e-47 |
| Msa0418970 | Msa0460630 | 0.833172 | 6.212448e-56 | -8.615850e-47 |
| Msa0432320 | Msa0460630 | 0.806332 | 8.658338e-50 | -8.615850e-47 |
| Msa0460550 | Msa0460630 | 0.832159 | 1.108444e-55 | -8.615850e-47 |
| Msa0460630 | Msa0471460 | 0.825072 | 5.721473e-54 | -8.615850e-47 |
| Msa0460630 | Msa0517250 | 0.800763 | 1.237433e-48 | -8.615850e-47 |
| Msa0460630 | Msa0525210 | 0.805787 | 1.127447e-49 | -8.615850e-47 |
| Msa0460630 | Msa0528570 | 0.849189 | 3.792169e-60 | -8.615850e-47 |
| Msa0460630 | Msa0557460 | 0.805804 | 1.118312e-49 | -8.615850e-47 |
| Msa0460630 | Msa0562620 | 0.873615 | 1.282177e-67 | -8.615850e-47 |
| Msa0460630 | Msa0616510 | 0.855536 | 5.905316e-62 | -8.615850e-47 |
| Msa0460630 | Msa0649840 | 0.808191 | 3.495796e-50 | -8.615850e-47 |
| Msa0460630 | Msa0691910 | 0.804356 | 2.246362e-49 | -8.615850e-47 |
| Msa0460630 | Msa0699840 | 0.856930 | 2.305342e-62 | -8.615850e-47 |
| Msa0460630 | Msa0738700 | 0.844443 | 7.537254e-59 | -8.615850e-47 |
| Msa0460630 | Msa0782750 | 0.847386 | 1.194759e-59 | -8.615850e-47 |
| Msa0460630 | Msa0819170 | 0.804827 | 1.791791e-49 | -8.615850e-47 |
| Msa0460630 | Msa0820380 | 0.818367 | 2.034468e-52 | -8.615850e-47 |
| Msa0460630 | Msa0859290 | 0.838143 | 3.425105e-57 | -8.615850e-47 |
| Msa0460630 | Msa1014320 | 0.848964 | 4.380161e-60 | -8.615850e-47 |
| Msa0460630 | Msa1042160 | 0.808473 | 3.044673e-50 | -8.615850e-47 |
| Msa0460630 | Msa1042190 | 0.812563 | 3.981460e-51 | -8.615850e-47 |
| Msa0460630 | Msa1055310 | 0.817708 | 2.866106e-52 | -8.615850e-47 |
| Msa0460630 | Msa1167470 | 0.806463 | 8.125164e-50 | -8.615850e-47 |
| Msa0460630 | Msa1242370 | 0.813520 | 2.454939e-51 | -8.615850e-47 |
| Msa0460630 | Msa1284120 | 0.840764 | 7.141919e-58 | -8.615850e-47 |
| Msa0460630 | Msa1341890 | 0.860825 | 1.576386e-63 | -8.615850e-47 |
| Msa0460630 | Msa1415540 | 0.853039 | 3.108404e-61 | -8.615850e-47 |
| Msa0460630 | Msa1429860 | 0.815895 | 7.311852e-52 | -8.615850e-47 |
| Msa0460630 | Msa1435630 | 0.805588 | 1.241678e-49 | -8.615850e-47 |
| Msa0460630 | Msa1452140 | 0.813753 | 2.182037e-51 | -8.615850e-47 |
| Msa0460630 | Msa1459360 | 0.811774 | 5.916785e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460630 | MtrunA17_Chr3g0109841 | 98.575 | 842 | 12 | 0 | 1 | 842 | 1 | 842 | 0.0 | 1734 |
| Msa0460630 | MtrunA17_Chr5g0433761 | 82.002 | 839 | 145 | 3 | 1 | 838 | 1 | 834 | 0.0 | 1452 |
| Msa0460630 | MtrunA17_Chr6g0481131 | 70.833 | 816 | 238 | 0 | 19 | 834 | 18 | 833 | 0.0 | 1236 |
| Msa0460630 | MtrunA17_Chr6g0481171 | 72.766 | 705 | 188 | 1 | 134 | 834 | 5 | 709 | 0.0 | 1083 |
| Msa0460630 | MtrunA17_Chr1g0195241 | 57.772 | 772 | 325 | 1 | 37 | 808 | 16 | 786 | 0.0 | 937 |
| Msa0460630 | MtrunA17_Chr7g0269581 | 55.037 | 814 | 359 | 3 | 1 | 814 | 1 | 807 | 0.0 | 933 |
| Msa0460630 | MtrunA17_Chr2g0301621 | 54.310 | 812 | 360 | 7 | 5 | 814 | 2 | 804 | 0.0 | 928 |
| Msa0460630 | MtrunA17_Chr4g0070011 | 55.584 | 788 | 344 | 4 | 27 | 813 | 23 | 805 | 0.0 | 924 |
| Msa0460630 | MtrunA17_Chr6g0481241 | 64.130 | 184 | 44 | 1 | 639 | 822 | 1 | 162 | 1.19e-75 | 246 |
| Msa0460630 | MtrunA17_Chr6g0481261 | 83.333 | 102 | 17 | 0 | 639 | 740 | 1 | 102 | 7.87e-56 | 187 |
| Msa0460630 | MtrunA17_Chr5g0443091 | 27.027 | 555 | 321 | 21 | 286 | 787 | 171 | 694 | 2.13e-40 | 160 |
| Msa0460630 | MtrunA17_Chr4g0064501 | 27.306 | 542 | 312 | 19 | 286 | 779 | 168 | 675 | 2.08e-39 | 157 |
| Msa0460630 | MtrunA17_Chr3g0096241 | 26.104 | 521 | 326 | 17 | 286 | 769 | 167 | 665 | 4.25e-38 | 154 |
| Msa0460630 | MtrunA17_Chr6g0481151 | 78.082 | 73 | 16 | 0 | 569 | 641 | 24 | 96 | 1.14e-32 | 122 |
| Msa0460630 | MtrunA17_Chr4g0009181 | 62.338 | 77 | 26 | 2 | 1 | 76 | 3 | 77 | 4.23e-23 | 94.0 |
| Msa0460630 | MtrunA17_Chr6g0481161 | 86.364 | 44 | 6 | 0 | 691 | 734 | 1 | 44 | 1.08e-21 | 88.6 |
| Msa0460630 | MtrunA17_Chr6g0481271 | 45.455 | 66 | 34 | 1 | 771 | 834 | 1 | 66 | 1.29e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460630 | AT1G73370.3 | 69.656 | 814 | 244 | 1 | 2 | 815 | 4 | 814 | 0.0 | 1218 |
| Msa0460630 | AT1G73370.1 | 69.656 | 814 | 244 | 1 | 2 | 815 | 4 | 814 | 0.0 | 1218 |
| Msa0460630 | AT5G37180.1 | 71.159 | 794 | 224 | 2 | 21 | 813 | 13 | 802 | 0.0 | 1203 |
| Msa0460630 | AT1G73370.2 | 71.169 | 770 | 222 | 0 | 46 | 815 | 1 | 770 | 0.0 | 1177 |
| Msa0460630 | AT5G37180.2 | 75.081 | 614 | 153 | 0 | 200 | 813 | 1 | 614 | 0.0 | 994 |
| Msa0460630 | AT4G02280.1 | 56.999 | 793 | 340 | 1 | 22 | 814 | 18 | 809 | 0.0 | 966 |
| Msa0460630 | AT5G49190.1 | 54.981 | 793 | 356 | 1 | 22 | 814 | 15 | 806 | 0.0 | 927 |
| Msa0460630 | AT5G49190.2 | 55.513 | 780 | 346 | 1 | 35 | 814 | 18 | 796 | 0.0 | 922 |
| Msa0460630 | AT3G43190.2 | 56.443 | 776 | 330 | 5 | 41 | 814 | 39 | 808 | 0.0 | 919 |
| Msa0460630 | AT3G43190.1 | 56.443 | 776 | 330 | 5 | 41 | 814 | 39 | 808 | 0.0 | 919 |
| Msa0460630 | AT5G37180.3 | 76.619 | 556 | 130 | 0 | 258 | 813 | 1 | 556 | 0.0 | 918 |
| Msa0460630 | AT5G20830.3 | 56.774 | 775 | 329 | 4 | 41 | 814 | 39 | 808 | 0.0 | 913 |
| Msa0460630 | AT5G20830.2 | 56.774 | 775 | 329 | 4 | 41 | 814 | 39 | 808 | 0.0 | 913 |
| Msa0460630 | AT5G20830.1 | 56.774 | 775 | 329 | 4 | 41 | 814 | 39 | 808 | 0.0 | 913 |
| Msa0460630 | AT5G49190.3 | 57.510 | 739 | 313 | 1 | 76 | 814 | 3 | 740 | 0.0 | 909 |
| Msa0460630 | AT5G11110.1 | 27.903 | 534 | 323 | 17 | 286 | 784 | 177 | 683 | 8.02e-39 | 156 |
| Msa0460630 | AT1G04920.1 | 27.091 | 550 | 328 | 21 | 286 | 790 | 172 | 693 | 1.26e-38 | 155 |
| Msa0460630 | AT5G20280.1 | 26.866 | 536 | 339 | 18 | 286 | 786 | 170 | 687 | 1.66e-37 | 152 |
| Msa0460630 | AT4G10120.4 | 27.027 | 518 | 321 | 18 | 286 | 770 | 23 | 516 | 5.15e-36 | 147 |
| Msa0460630 | AT4G10120.2 | 26.731 | 520 | 320 | 19 | 286 | 770 | 197 | 690 | 9.58e-36 | 146 |
| Msa0460630 | AT4G10120.3 | 26.731 | 520 | 320 | 19 | 286 | 770 | 197 | 690 | 9.58e-36 | 146 |
| Msa0460630 | AT4G10120.1 | 26.731 | 520 | 320 | 19 | 286 | 770 | 197 | 690 | 9.58e-36 | 146 |
| Msa0460630 | AT4G10120.5 | 26.761 | 497 | 309 | 16 | 305 | 770 | 17 | 489 | 1.27e-34 | 142 |
Find 180 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACCTTATGTTTAAGAATT+TGG | 0.104517 | 3_3:+58113899 | Msa0460630:CDS |
| TGCAAACAAGTTGCTGAATA+TGG | 0.128055 | 3_3:+58113800 | Msa0460630:CDS |
| TTCTCTATTCATGGTTATTT+TGG | 0.154276 | 3_3:+58111221 | Msa0460630:CDS |
| ATTACTGTTGATGGTGTTTC+TGG | 0.165228 | 3_3:+58113527 | Msa0460630:CDS |
| AATGCACTTGAAGCAGATTT+TGG | 0.198635 | 3_3:+58110477 | Msa0460630:CDS |
| CTTGCCATTGAGAAGATTAT+AGG | 0.209492 | 3_3:-58113137 | None:intergenic |
| TATCTTTGCTTTGCCACTTT+TGG | 0.224921 | 3_3:-58113861 | None:intergenic |
| ATTCAAGATATTGTATATAT+TGG | 0.234315 | 3_3:-58109525 | None:intergenic |
| GGACTATGCAGAGTTGTTTC+AGG | 0.262656 | 3_3:+58112842 | Msa0460630:CDS |
| AATTTCATGGCTTCTGCATC+AGG | 0.262953 | 3_3:+58109545 | Msa0460630:exon |
| AGGTAATCGGTTGATGTTAT+AGG | 0.265521 | 3_3:-58110290 | None:intergenic |
| AAATTACACTGATGGAAATT+TGG | 0.274664 | 3_3:+58112229 | Msa0460630:CDS |
| TGAATAGGTTGTTTACATAT+TGG | 0.276020 | 3_3:+58111652 | Msa0460630:intron |
| ATACAATATCTTGAATTTCA+TGG | 0.278796 | 3_3:+58109532 | Msa0460630:exon |
| ATATTTGATTCCTATCATTC+TGG | 0.280201 | 3_3:-58109733 | None:intergenic |
| GTTGTGATCTTCTCTATTCA+TGG | 0.282418 | 3_3:+58111212 | Msa0460630:CDS |
| TTAAAATTGCCTTCTTCAAT+TGG | 0.283903 | 3_3:+58110525 | Msa0460630:CDS |
| TTAAGAACTTTGAAACAAAA+TGG | 0.290010 | 3_3:-58110557 | None:intergenic |
| CCTTGGTTCAAAATCATCAT+AGG | 0.298372 | 3_3:-58110968 | None:intergenic |
| AATTGAAGGGTCAGTTTAGA+TGG | 0.312260 | 3_3:+58113333 | Msa0460630:CDS |
| CAAATATTGGAAGGCAATCT+TGG | 0.312412 | 3_3:+58109749 | Msa0460630:CDS |
| TATAATAAATCTTCAATTGT+AGG | 0.319514 | 3_3:-58112968 | None:intergenic |
| GTTACCTGTCCGCCGGTATC+TGG | 0.321700 | 3_3:-58111266 | None:intergenic |
| AAATTTGGCAGCTTCTCTTA+TGG | 0.323319 | 3_3:+58112244 | Msa0460630:CDS |
| GGCAAAGACACAACCTATAT+TGG | 0.326803 | 3_3:+58110602 | Msa0460630:CDS |
| TAAGGCCAGACCCTGGAGTT+TGG | 0.328183 | 3_3:+58110228 | Msa0460630:CDS |
| TTGCCTTCTTCAATTGGAAA+TGG | 0.328203 | 3_3:+58110531 | Msa0460630:CDS |
| GGAAAACCAGATCTCATTAT+AGG | 0.331613 | 3_3:+58112206 | Msa0460630:CDS |
| TTTGGTCAAGCAGATGTTCT+TGG | 0.337396 | 3_3:+58111239 | Msa0460630:CDS |
| GAGAAGAGATGGCAGAAATA+AGG | 0.340112 | 3_3:+58113282 | Msa0460630:CDS |
| TTCCAATTCCTGATTGCATT+TGG | 0.342271 | 3_3:-58111887 | None:intergenic |
| TTCCTTGAATTTGAGGTAAT+CGG | 0.343680 | 3_3:-58110303 | None:intergenic |
| CCTGCTTTGTATGAAGCATT+TGG | 0.348320 | 3_3:+58113434 | Msa0460630:CDS |
| ATATTCTTTCCTTGAATTTG+AGG | 0.349412 | 3_3:-58110310 | None:intergenic |
| CATTTGGTTCCTTGAGCATC+AGG | 0.353289 | 3_3:-58111871 | None:intergenic |
| TTCTCCATGTTCATTGGATC+TGG | 0.357587 | 3_3:-58111158 | None:intergenic |
| TTTGCTACTGCAGGCGTTCA+AGG | 0.369565 | 3_3:+58114244 | Msa0460630:intron |
| AACCAAATGCAATCAGGAAT+TGG | 0.378445 | 3_3:+58111885 | Msa0460630:CDS |
| AGAAATGGAGCAAGTTATAA+AGG | 0.380139 | 3_3:+58109709 | Msa0460630:CDS |
| CAATTGTATCGGCCATGAAT+TGG | 0.380384 | 3_3:-58112520 | None:intergenic |
| CTACTCTGCTTCGTTGCATC+TGG | 0.382130 | 3_3:-58109611 | None:intergenic |
| TCATGATTTGATGGAAGAAA+TGG | 0.387496 | 3_3:+58109694 | Msa0460630:CDS |
| GAATGATAGGAATCAAATAT+TGG | 0.388211 | 3_3:+58109736 | Msa0460630:CDS |
| TCACCAAATTCTTAAACATA+AGG | 0.390237 | 3_3:-58113902 | None:intergenic |
| AAGGCCAGACCCTGGAGTTT+GGG | 0.391013 | 3_3:+58110229 | Msa0460630:CDS |
| CATCATAACCAGCACATATC+AGG | 0.395020 | 3_3:+58112562 | Msa0460630:CDS |
| GGTTGTTGAGGTTCATCAAT+TGG | 0.407027 | 3_3:-58114013 | None:intergenic |
| GTGAACCTTGTCATAGTTGG+AGG | 0.408099 | 3_3:+58113230 | Msa0460630:CDS |
| CATAAAAGTTCATGATTTGA+TGG | 0.411962 | 3_3:+58109685 | Msa0460630:CDS |
| TGGCAAAGCAAAGATACATT+TGG | 0.414762 | 3_3:+58113868 | Msa0460630:CDS |
| TCACTTCTCATGCCAATTCA+TGG | 0.415497 | 3_3:+58112508 | Msa0460630:CDS |
| TGTAAGGAAAATAGACAGTT+TGG | 0.415507 | 3_3:-58112913 | None:intergenic |
| GATAACAAGTAGTCCAATAT+AGG | 0.417385 | 3_3:-58110615 | None:intergenic |
| TCTACCTTTCTCAAGGTACT+TGG | 0.421092 | 3_3:-58109657 | None:intergenic |
| TGTTCATTGGATCTGGAGCT+TGG | 0.422689 | 3_3:-58111151 | None:intergenic |
| GAGACTCTGCTGCTTGGAGT+TGG | 0.425685 | 3_3:-58114041 | None:intergenic |
| CTCCATTGAGAGGATCGATA+TGG | 0.425897 | 3_3:-58113553 | None:intergenic |
| TTATAAAGGACCAGAATGAT+AGG | 0.436409 | 3_3:+58109723 | Msa0460630:CDS |
| GCGTTCAAGGTCCAGATCAC+AGG | 0.438873 | 3_3:+58114257 | Msa0460630:CDS |
| AGCACATATCAGGAAATTGC+TGG | 0.441509 | 3_3:+58112572 | Msa0460630:CDS |
| TGGCATGAGAAGTGATACTT+AGG | 0.443770 | 3_3:-58112500 | None:intergenic |
| CGATTTATTGCCGACACAAA+GGG | 0.445300 | 3_3:+58113398 | Msa0460630:CDS |
| GAAGCTTTGCAACTGAGCTC+AGG | 0.445828 | 3_3:-58110891 | None:intergenic |
| AGCAATTTCCTGATATGTGC+TGG | 0.445998 | 3_3:-58112570 | None:intergenic |
| GAGTGCTTGGTATCAATGAT+TGG | 0.446392 | 3_3:-58111910 | None:intergenic |
| TAATTTCCTATAATGAGATC+TGG | 0.449484 | 3_3:-58112212 | None:intergenic |
| AAACATACCACAAGAATTTG+AGG | 0.450197 | 3_3:-58111740 | None:intergenic |
| ATTGGATCAAGTGAGAGCTT+TGG | 0.450839 | 3_3:+58111670 | Msa0460630:CDS |
| ATAAAGGAATCCTGCGTCAA+TGG | 0.450947 | 3_3:+58111962 | Msa0460630:CDS |
| CATTCATAGGTTTAAGCAGT+GGG | 0.453853 | 3_3:+58111058 | Msa0460630:intron |
| CTCTTATGGCTAGCAAACTT+AGG | 0.458904 | 3_3:+58112258 | Msa0460630:CDS |
| CATATGTTGCCTTTGCAGTA+AGG | 0.461366 | 3_3:+58110210 | Msa0460630:CDS |
| ATTCCTTTATCTGTCTGAAA+AGG | 0.464552 | 3_3:-58111949 | None:intergenic |
| GCCATACCATTCGACTAAAC+CGG | 0.464737 | 3_3:-58113183 | None:intergenic |
| GCATGGCTTTCATATTGTCC+AGG | 0.464964 | 3_3:-58112803 | None:intergenic |
| TTGATCTTAACCCTGTGATC+TGG | 0.465172 | 3_3:-58114268 | None:intergenic |
| GTTCTTGGCTTGCCAGATAC+CGG | 0.467570 | 3_3:+58111254 | Msa0460630:CDS |
| CCAGCGGAAATTACTGTTGA+TGG | 0.471975 | 3_3:+58113518 | Msa0460630:CDS |
| TGGCAAAACACCCCTTCATA+TGG | 0.472121 | 3_3:-58109637 | None:intergenic |
| GCAAACAAGTTGCTGAATAT+GGG | 0.473370 | 3_3:+58113801 | Msa0460630:CDS |
| TTGGTGAACCTTGTCATAGT+TGG | 0.474389 | 3_3:+58113227 | Msa0460630:CDS |
| ATCACAACATTGAATATTGT+GGG | 0.477811 | 3_3:-58111197 | None:intergenic |
| TCAAGGAACCAAATGCAATC+AGG | 0.478957 | 3_3:+58111879 | Msa0460630:CDS |
| GATGTTGTGAAGAACATAAC+CGG | 0.480452 | 3_3:+58113164 | Msa0460630:CDS |
| AACCGATTACCTCAAATTCA+AGG | 0.481703 | 3_3:+58110301 | Msa0460630:CDS |
| AATTGAAAAGTATCAATTGA+AGG | 0.483871 | 3_3:+58113319 | Msa0460630:CDS |
| GATCACAACATTGAATATTG+TGG | 0.486777 | 3_3:-58111198 | None:intergenic |
| TAAAGGAATCCTGCGTCAAT+GGG | 0.489529 | 3_3:+58111963 | Msa0460630:CDS |
| TGCTGCTTGGAGTTGGACAC+TGG | 0.491085 | 3_3:-58114034 | None:intergenic |
| TTCCATATCGATCCTCTCAA+TGG | 0.492417 | 3_3:+58113551 | Msa0460630:CDS |
| AAAACCTATAATCTTCTCAA+TGG | 0.494217 | 3_3:+58113133 | Msa0460630:CDS |
| GACTATGCAGAGTTGTTTCA+GGG | 0.497122 | 3_3:+58112843 | Msa0460630:CDS |
| TTTACATATTCCCAAACTCC+AGG | 0.498127 | 3_3:-58110239 | None:intergenic |
| GAACAAAAGGTTGAGAAGCT+TGG | 0.499509 | 3_3:+58113208 | Msa0460630:CDS |
| GAAACAACTCTGCATAGTCC+TGG | 0.499572 | 3_3:-58112839 | None:intergenic |
| TATTCCCAAACTCCAGGGTC+TGG | 0.501451 | 3_3:-58110233 | None:intergenic |
| AGTACCTTGAGAAAGGTAGA+AGG | 0.502369 | 3_3:+58109660 | Msa0460630:CDS |
| AATGGTATGGCAAGAACAAA+AGG | 0.505067 | 3_3:+58113195 | Msa0460630:CDS |
| ATCAAAAGACAGAGAAGAGA+TGG | 0.505369 | 3_3:+58113271 | Msa0460630:CDS |
| CTCTCCATTGCGATGTCTAT+CGG | 0.511081 | 3_3:-58113369 | None:intergenic |
| CTTACTGCAAAGGCAACATA+TGG | 0.514465 | 3_3:-58110209 | None:intergenic |
| ATTGAAAAGTATCAATTGAA+GGG | 0.514770 | 3_3:+58113320 | Msa0460630:CDS |
| AGGGTTAAGATCAAGTATAC+AGG | 0.517639 | 3_3:+58114277 | Msa0460630:exon |
| GCAGAGTAGGTACCATATGA+AGG | 0.520501 | 3_3:+58109625 | Msa0460630:CDS |
| TCATCATAGGGAGTATCCAC+TGG | 0.521258 | 3_3:-58110955 | None:intergenic |
| CAGCAGAGTCTCAGAAAACA+AGG | 0.523143 | 3_3:+58114052 | Msa0460630:CDS |
| TTTGCCAAGTACCTTGAGAA+AGG | 0.524246 | 3_3:+58109653 | Msa0460630:CDS |
| CTTGCCAGATACCGGCGGAC+AGG | 0.524415 | 3_3:+58111262 | Msa0460630:CDS |
| TGCATTCATTGCAATTGTAT+CGG | 0.531501 | 3_3:-58112531 | None:intergenic |
| AGTCCATTTCCAATTGAAGA+AGG | 0.532379 | 3_3:-58110534 | None:intergenic |
| AGTGAATAATGAACCAAAAG+TGG | 0.533551 | 3_3:+58113848 | Msa0460630:CDS |
| CTTGGTTCAAAATCATCATA+GGG | 0.534597 | 3_3:-58110967 | None:intergenic |
| AACTAAGATTCTCAACCTCA+TGG | 0.538311 | 3_3:+58112181 | Msa0460630:CDS |
| TGATCCTTCTACCTTTCTCA+AGG | 0.540900 | 3_3:-58109664 | None:intergenic |
| CTTGATTCGTCTCCATTGAG+AGG | 0.541337 | 3_3:-58113563 | None:intergenic |
| TGAGTAAACCTCTCAAGATA+AGG | 0.545448 | 3_3:-58112006 | None:intergenic |
| TGGAACATGATTTCAGCGGC+AGG | 0.548654 | 3_3:+58113635 | Msa0460630:CDS |
| CCAAATGCTTCATACAAAGC+AGG | 0.548728 | 3_3:-58113434 | None:intergenic |
| TTATCTTGAGAGGTTTACTC+AGG | 0.550480 | 3_3:+58112008 | Msa0460630:CDS |
| ATTATAGGAAATTACACTGA+TGG | 0.553471 | 3_3:+58112221 | Msa0460630:CDS |
| ACATTTATCCTTATCTTGAG+AGG | 0.554628 | 3_3:+58111998 | Msa0460630:CDS |
| GGTGCAGCTATGTTGAACTT+AGG | 0.558768 | 3_3:-58112881 | None:intergenic |
| GATAGGAATCAAATATTGGA+AGG | 0.559030 | 3_3:+58109740 | Msa0460630:CDS |
| ATTTCATGGCTTCTGCATCA+GGG | 0.561950 | 3_3:+58109546 | Msa0460630:exon |
| ATGAAGATTCAGATGTCAAG+TGG | 0.562035 | 3_3:+58112465 | Msa0460630:CDS |
| TAGACAGTTTGGTCAGCACC+AGG | 0.562574 | 3_3:-58112902 | None:intergenic |
| ACATAACCGGTTTAGTCGAA+TGG | 0.563404 | 3_3:+58113177 | Msa0460630:CDS |
| GATTGCAGCGTATTAATGAA+TGG | 0.564848 | 3_3:+58113657 | Msa0460630:CDS |
| CTCAGTTGCAAAGCTTCAGA+TGG | 0.565623 | 3_3:+58110897 | Msa0460630:CDS |
| GAGTTGGACACTGGTTGTTG+AGG | 0.566263 | 3_3:-58114025 | None:intergenic |
| CTATAATCTTCTCAATGGCA+AGG | 0.572371 | 3_3:+58113138 | Msa0460630:CDS |
| ATAAATCTTCAATTGTAGGA+TGG | 0.578371 | 3_3:-58112964 | None:intergenic |
| AAGATTCTCAACCTCATGGA+AGG | 0.580091 | 3_3:+58112185 | Msa0460630:CDS |
| AGGGTCTGGCCTTACTGCAA+AGG | 0.580872 | 3_3:-58110219 | None:intergenic |
| TAGAAATGTTACCTGTCCGC+CGG | 0.582278 | 3_3:-58111273 | None:intergenic |
| CAGAGTAGGTACCATATGAA+GGG | 0.583018 | 3_3:+58109626 | Msa0460630:CDS |
| CCATGGTTAGTAGCAAAAGT+TGG | 0.583413 | 3_3:-58113491 | None:intergenic |
| AAACAACTCTGCATAGTCCT+GGG | 0.585010 | 3_3:-58112838 | None:intergenic |
| TCGATTTATTGCCGACACAA+AGG | 0.585397 | 3_3:+58113397 | Msa0460630:CDS |
| AAGTTCAACATAGCTGCACC+TGG | 0.586850 | 3_3:+58112884 | Msa0460630:CDS |
| CCATCAACAGTAATTTCCGC+TGG | 0.588157 | 3_3:-58113518 | None:intergenic |
| ACCGGTTTAGTCGAATGGTA+TGG | 0.588404 | 3_3:+58113182 | Msa0460630:CDS |
| TCAGAAAACAAGGAACAAGC+AGG | 0.590337 | 3_3:+58114062 | Msa0460630:CDS |
| AAGCTTTGCAACTGAGCTCA+GGG | 0.590368 | 3_3:-58110890 | None:intergenic |
| CATGCAACATTTACACTCCC+AGG | 0.590537 | 3_3:+58112821 | Msa0460630:CDS |
| CAGATGCAACGAAGCAGAGT+AGG | 0.591388 | 3_3:+58109612 | Msa0460630:CDS |
| ACTGCAAAGGCAACATATGG+TGG | 0.591779 | 3_3:-58110206 | None:intergenic |
| TTGTTATCACTAAATCATCA+AGG | 0.594692 | 3_3:+58110630 | Msa0460630:CDS |
| AGCTCCAGATCCAATGAACA+TGG | 0.595996 | 3_3:+58111154 | Msa0460630:CDS |
| TTAGTTAGAATTAAGCAGCA+AGG | 0.596666 | 3_3:+58111704 | Msa0460630:CDS |
| AGTGGATGGGGAGATACTGC+AGG | 0.599037 | 3_3:+58111089 | Msa0460630:CDS |
| AGATACTGCAGGAAGAGTGA+AGG | 0.602197 | 3_3:+58111100 | Msa0460630:CDS |
| TTACATATTCCCAAACTCCA+GGG | 0.604096 | 3_3:-58110238 | None:intergenic |
| AGCGAGAAACCCATTGACGC+AGG | 0.604373 | 3_3:-58111972 | None:intergenic |
| CGTTCAAGGTCCAGATCACA+GGG | 0.611161 | 3_3:+58114258 | Msa0460630:CDS |
| TTTGCAGTAAGGCCAGACCC+TGG | 0.611570 | 3_3:+58110221 | Msa0460630:CDS |
| GTAAAGTGGATTCGACACAT+TGG | 0.612673 | 3_3:+58113615 | Msa0460630:CDS |
| AGTGAATCCTCAAATTCTTG+TGG | 0.613261 | 3_3:+58111733 | Msa0460630:CDS |
| TAGCAAACTTAGGATAACTC+AGG | 0.614245 | 3_3:+58112268 | Msa0460630:CDS |
| GCTTGCAGCAAAGATAAACC+TGG | 0.616014 | 3_3:+58112785 | Msa0460630:intron |
| GGCATGAGAAGTGATACTTA+GGG | 0.616329 | 3_3:-58112499 | None:intergenic |
| TACTAACCATGGTGGTCCAG+CGG | 0.618133 | 3_3:+58113502 | Msa0460630:CDS |
| TATCCACTGGAAGTGCTGAA+AGG | 0.620301 | 3_3:-58110942 | None:intergenic |
| AGGCTCATACCTGATGCTCA+AGG | 0.620828 | 3_3:+58111862 | Msa0460630:CDS |
| CACAAAAGCTCCCTTTGTGT+CGG | 0.624836 | 3_3:-58113408 | None:intergenic |
| TCATTCATAGGTTTAAGCAG+TGG | 0.624989 | 3_3:+58111057 | Msa0460630:intron |
| GCTTCAGATGGCACTAACAG+TGG | 0.628405 | 3_3:+58110909 | Msa0460630:CDS |
| CTGGGAGTGTAAATGTTGCA+TGG | 0.644191 | 3_3:-58112820 | None:intergenic |
| CTTGGCTTGCCAGATACCGG+CGG | 0.648157 | 3_3:+58111257 | Msa0460630:CDS |
| CATATCAGGAAATTGCTGGA+AGG | 0.653215 | 3_3:+58112576 | Msa0460630:CDS |
| ATTCCTTTCAGCACTTCCAG+TGG | 0.655307 | 3_3:+58110939 | Msa0460630:CDS |
| AGAGTAGGTACCATATGAAG+GGG | 0.660385 | 3_3:+58109627 | Msa0460630:CDS |
| GTTGACAATGATAGGTCACA+AGG | 0.660394 | 3_3:+58111842 | Msa0460630:intron |
| ACATTGGAACATGATTTCAG+CGG | 0.663048 | 3_3:+58113631 | Msa0460630:CDS |
| ATTCATAGGTTTAAGCAGTG+GGG | 0.679591 | 3_3:+58111059 | Msa0460630:intron |
| GAGGTTGAGAATCTTAGTTG+TGG | 0.682574 | 3_3:-58112177 | None:intergenic |
| CAGACCGATAGACATCGCAA+TGG | 0.696451 | 3_3:+58113365 | Msa0460630:CDS |
| TAATTTCCGCTGGACCACCA+TGG | 0.697345 | 3_3:-58113508 | None:intergenic |
| GTCATTGAAGCAATGAACTG+TGG | 0.698242 | 3_3:+58113464 | Msa0460630:CDS |
| AGAAGCCTCCAACTATGACA+AGG | 0.698799 | 3_3:-58113235 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTATTCATTTGTT+CGG | + | chr3_3:58109938-58109957 | Msa0460630:intron | 10.0% |
| !! | ATTCAAGATATTGTATATAT+TGG | - | chr3_3:58109528-58109547 | None:intergenic | 15.0% |
| !!! | TTTATTTTATTCATTTGTTC+GGG | + | chr3_3:58109939-58109958 | Msa0460630:intron | 15.0% |
| !! | TAATAAGAAAAAAAGTTAGT+TGG | + | chr3_3:58110012-58110031 | Msa0460630:intron | 15.0% |
| !!! | TTGTTTTTCTTTTAATTATG+AGG | - | chr3_3:58112607-58112626 | None:intergenic | 15.0% |
| !! | AAAATTGAAGAAACTATAAA+AGG | + | chr3_3:58112727-58112746 | Msa0460630:intron | 15.0% |
| !! | TATAATAAATCTTCAATTGT+AGG | - | chr3_3:58112971-58112990 | None:intergenic | 15.0% |
| !! | ATACAATATCTTGAATTTCA+TGG | + | chr3_3:58109532-58109551 | Msa0460630:exon | 20.0% |
| !! | CAACAAAAAAAAATGCAAAT+TGG | - | chr3_3:58109813-58109832 | None:intergenic | 20.0% |
| !! | TCGATAATAATTTAAGAGAA+TGG | - | chr3_3:58110108-58110127 | None:intergenic | 20.0% |
| !!! | AAAAGTACAGTATAAGTAAA+AGG | - | chr3_3:58110358-58110377 | None:intergenic | 20.0% |
| !!! | GATTAGACAACAATTTTTAA+TGG | + | chr3_3:58110420-58110439 | Msa0460630:intron | 20.0% |
| !!! | ACAATTTTTAATGGTTAACT+TGG | + | chr3_3:58110429-58110448 | Msa0460630:intron | 20.0% |
| !!! | TTAAGAACTTTGAAACAAAA+TGG | - | chr3_3:58110560-58110579 | None:intergenic | 20.0% |
| !!! | GTAATTTTGTAATGTACTTT+TGG | + | chr3_3:58110813-58110832 | Msa0460630:intron | 20.0% |
| !! | TTAAACCTATGAATGAAAAT+AGG | - | chr3_3:58111053-58111072 | None:intergenic | 20.0% |
| !! | ATGCTAAAAATCAATTGTAA+AGG | - | chr3_3:58111448-58111467 | None:intergenic | 20.0% |
| !! | CAAGTTTATTATGTATAGAA+AGG | - | chr3_3:58111786-58111805 | None:intergenic | 20.0% |
| !! | TCATTATTTATGCAAGAATA+TGG | + | chr3_3:58111818-58111837 | Msa0460630:intron | 20.0% |
| !! | TAATCCTAAGTTTCAATAAT+AGG | - | chr3_3:58112301-58112320 | None:intergenic | 20.0% |
| !!! | AATTGAAAAGTATCAATTGA+AGG | + | chr3_3:58113319-58113338 | Msa0460630:CDS | 20.0% |
| !!! | ATTGAAAAGTATCAATTGAA+GGG | + | chr3_3:58113320-58113339 | Msa0460630:CDS | 20.0% |
| !!! | TTTCTTTGAAAAATGTAAAG+TGG | + | chr3_3:58113601-58113620 | Msa0460630:CDS | 20.0% |
| !! | TAACCTTATGTTTAAGAATT+TGG | + | chr3_3:58113899-58113918 | Msa0460630:CDS | 20.0% |
| ! | CATAAAAGTTCATGATTTGA+TGG | + | chr3_3:58109685-58109704 | Msa0460630:CDS | 25.0% |
| ! | ATATTTGATTCCTATCATTC+TGG | - | chr3_3:58109736-58109755 | None:intergenic | 25.0% |
| ! | GAATGATAGGAATCAAATAT+TGG | + | chr3_3:58109736-58109755 | Msa0460630:CDS | 25.0% |
| !! | CTTCTTATTAAGTTTTACAC+AGG | + | chr3_3:58109772-58109791 | Msa0460630:CDS | 25.0% |
| !! | ACACTAACATGCTTTTATAT+TGG | + | chr3_3:58109868-58109887 | Msa0460630:intron | 25.0% |
| !! | CATATTGCTTTAGATGTATT+CGG | + | chr3_3:58110041-58110060 | Msa0460630:intron | 25.0% |
| ! | CTAGTATGTCATTGTTTAAT+AGG | + | chr3_3:58110135-58110154 | Msa0460630:intron | 25.0% |
| ! | AATAGGCTTATTACTCAATA+TGG | + | chr3_3:58110152-58110171 | Msa0460630:intron | 25.0% |
| ! | ATATTCTTTCCTTGAATTTG+AGG | - | chr3_3:58110313-58110332 | None:intergenic | 25.0% |
| ! | AAAGAATATACGACCAAAAA+TGG | + | chr3_3:58110324-58110343 | Msa0460630:CDS | 25.0% |
| ! | TGTTGTCTAATCATTGAAAA+AGG | - | chr3_3:58110412-58110431 | None:intergenic | 25.0% |
| !! | TTAACTTGGTTTATGTTGTA+GGG | + | chr3_3:58110443-58110462 | Msa0460630:intron | 25.0% |
| ! | TTAAAATTGCCTTCTTCAAT+TGG | + | chr3_3:58110525-58110544 | Msa0460630:CDS | 25.0% |
| !! | TTCTTAACTTTACGTTTTAG+TGG | + | chr3_3:58110573-58110592 | Msa0460630:CDS | 25.0% |
| !!! | TCTTAACTTTACGTTTTAGT+GGG | + | chr3_3:58110574-58110593 | Msa0460630:CDS | 25.0% |
| ! | TTGTTATCACTAAATCATCA+AGG | + | chr3_3:58110630-58110649 | Msa0460630:CDS | 25.0% |
| !! | ACAATCCTATTTTCATTCAT+AGG | + | chr3_3:58111045-58111064 | Msa0460630:intron | 25.0% |
| ! | ATCACAACATTGAATATTGT+GGG | - | chr3_3:58111200-58111219 | None:intergenic | 25.0% |
| !! | TTCTCTATTCATGGTTATTT+TGG | + | chr3_3:58111221-58111240 | Msa0460630:CDS | 25.0% |
| !!! | AATTTTGACTCCTCTAAAAA+TGG | - | chr3_3:58111336-58111355 | None:intergenic | 25.0% |
| ! | TGAATGTAAACTGATATGTT+TGG | - | chr3_3:58111508-58111527 | None:intergenic | 25.0% |
| ! | TGAATAGGTTGTTTACATAT+TGG | + | chr3_3:58111652-58111671 | Msa0460630:intron | 25.0% |
| ! | TAATTTCCTATAATGAGATC+TGG | - | chr3_3:58112215-58112234 | None:intergenic | 25.0% |
| ! | ATTATAGGAAATTACACTGA+TGG | + | chr3_3:58112221-58112240 | Msa0460630:CDS | 25.0% |
| ! | AAATTACACTGATGGAAATT+TGG | + | chr3_3:58112229-58112248 | Msa0460630:CDS | 25.0% |
| ! | CTATCCTATTATTGAAACTT+AGG | + | chr3_3:58112294-58112313 | Msa0460630:intron | 25.0% |
| ! | GGTAACAAAAATTGTTGAAT+AGG | - | chr3_3:58112355-58112374 | None:intergenic | 25.0% |
| !! | AACAATTTTTGTTACCCTTA+AGG | + | chr3_3:58112359-58112378 | Msa0460630:intron | 25.0% |
| ! | AGTAAAAAGGAAATCCTTAA+GGG | - | chr3_3:58112376-58112395 | None:intergenic | 25.0% |
| ! | ATAAATCTTCAATTGTAGGA+TGG | - | chr3_3:58112967-58112986 | None:intergenic | 25.0% |
| ! | TAACATCAACAACAAAAGAA+TGG | - | chr3_3:58113037-58113056 | None:intergenic | 25.0% |
| !! | TGATTAATTTTCTCTTACAG+TGG | + | chr3_3:58113092-58113111 | Msa0460630:intron | 25.0% |
| ! | AAAACCTATAATCTTCTCAA+TGG | + | chr3_3:58113133-58113152 | Msa0460630:CDS | 25.0% |
| !! | CTAATTTAGAGCTAGTAAAT+TGG | - | chr3_3:58113698-58113717 | None:intergenic | 25.0% |
| !!! | CTTTTGTTTTCAGTTATACA+TGG | + | chr3_3:58113769-58113788 | Msa0460630:intron | 25.0% |
| ! | TCACCAAATTCTTAAACATA+AGG | - | chr3_3:58113905-58113924 | None:intergenic | 25.0% |
| ! | TTCTTATATGTAAATGTCAC+AGG | + | chr3_3:58113973-58113992 | Msa0460630:intron | 25.0% |
| !!! | AGGTTAATGTAGCTTATTTT+CGG | + | chr3_3:58114297-58114316 | Msa0460630:three_prime_UTR | 25.0% |
| TCATGATTTGATGGAAGAAA+TGG | + | chr3_3:58109694-58109713 | Msa0460630:CDS | 30.0% | |
| AGAAATGGAGCAAGTTATAA+AGG | + | chr3_3:58109709-58109728 | Msa0460630:CDS | 30.0% | |
| TTATAAAGGACCAGAATGAT+AGG | + | chr3_3:58109723-58109742 | Msa0460630:CDS | 30.0% | |
| GATAGGAATCAAATATTGGA+AGG | + | chr3_3:58109740-58109759 | Msa0460630:CDS | 30.0% | |
| ! | TACATCTAAAGCAATATGGT+CGG | - | chr3_3:58110039-58110058 | None:intergenic | 30.0% |
| ! | CGAATACATCTAAAGCAATA+TGG | - | chr3_3:58110043-58110062 | None:intergenic | 30.0% |
| !! | ATATGGATTTTAATGCTTGC+AGG | + | chr3_3:58110169-58110188 | Msa0460630:intron | 30.0% |
| ! | TTCCTTGAATTTGAGGTAAT+CGG | - | chr3_3:58110306-58110325 | None:intergenic | 30.0% |
| ! | AAAGGACATAGTACCATTTT+TGG | - | chr3_3:58110340-58110359 | None:intergenic | 30.0% |
| ! | GTTAACTTGGTTTATGTTGT+AGG | + | chr3_3:58110442-58110461 | Msa0460630:intron | 30.0% |
| !!! | GGCAATTTTAAGTTAGGAAT+AGG | - | chr3_3:58110516-58110535 | None:intergenic | 30.0% |
| !!! | GAAGAAGGCAATTTTAAGTT+AGG | - | chr3_3:58110522-58110541 | None:intergenic | 30.0% |
| !! | TTTACGTTTTAGTGGGAAAT+TGG | + | chr3_3:58110581-58110600 | Msa0460630:CDS | 30.0% |
| GATAACAAGTAGTCCAATAT+AGG | - | chr3_3:58110618-58110637 | None:intergenic | 30.0% | |
| !! | ATCACTGATTTCCAAAACAT+TGG | - | chr3_3:58110718-58110737 | None:intergenic | 30.0% |
| !! | GTACGTCATGTTCTAAAAAT+TGG | - | chr3_3:58110785-58110804 | None:intergenic | 30.0% |
| CTTGGTTCAAAATCATCATA+GGG | - | chr3_3:58110970-58110989 | None:intergenic | 30.0% | |
| AAAAACTTCTCCATGTTCAT+TGG | - | chr3_3:58111167-58111186 | None:intergenic | 30.0% | |
| GATCACAACATTGAATATTG+TGG | - | chr3_3:58111201-58111220 | None:intergenic | 30.0% | |
| !! | GTGTTTAGTTCCATTTTTAG+AGG | + | chr3_3:58111323-58111342 | Msa0460630:intron | 30.0% |
| TTGGATGCATTCACTTAAAA+GGG | - | chr3_3:58111489-58111508 | None:intergenic | 30.0% | |
| TTTGGATGCATTCACTTAAA+AGG | - | chr3_3:58111490-58111509 | None:intergenic | 30.0% | |
| ACATTCATTTAACATGTGCT+TGG | - | chr3_3:58111599-58111618 | None:intergenic | 30.0% | |
| AAGCACATGTTAAATGAATG+TGG | + | chr3_3:58111598-58111617 | Msa0460630:intron | 30.0% | |
| ! | GCTTTTCTACAATCTTGAAT+AGG | + | chr3_3:58111637-58111656 | Msa0460630:intron | 30.0% |
| TTAGTTAGAATTAAGCAGCA+AGG | + | chr3_3:58111704-58111723 | Msa0460630:CDS | 30.0% | |
| AAACATACCACAAGAATTTG+AGG | - | chr3_3:58111743-58111762 | None:intergenic | 30.0% | |
| !! | AATATGGTGTTGACAATGAT+AGG | + | chr3_3:58111834-58111853 | Msa0460630:intron | 30.0% |
| ATTCCTTTATCTGTCTGAAA+AGG | - | chr3_3:58111952-58111971 | None:intergenic | 30.0% | |
| ACATTTATCCTTATCTTGAG+AGG | + | chr3_3:58111998-58112017 | Msa0460630:CDS | 30.0% | |
| CAGTAAAAAGGAAATCCTTA+AGG | - | chr3_3:58112377-58112396 | None:intergenic | 30.0% | |
| TATTAGCTCATGCAGTAAAA+AGG | - | chr3_3:58112389-58112408 | None:intergenic | 30.0% | |
| TGCATTCATTGCAATTGTAT+CGG | - | chr3_3:58112534-58112553 | None:intergenic | 30.0% | |
| TGTAAGGAAAATAGACAGTT+TGG | - | chr3_3:58112916-58112935 | None:intergenic | 30.0% | |
| !!! | TCTCTGTCTTTTGATTTCAA+AGG | - | chr3_3:58113266-58113285 | None:intergenic | 30.0% |
| AACATTGAATCAAGATTGCA+TGG | + | chr3_3:58113746-58113765 | Msa0460630:intron | 30.0% | |
| !!! | TGGGAAGCATTTATACTTTT+TGG | + | chr3_3:58113820-58113839 | Msa0460630:CDS | 30.0% |
| !! | GAAGCATTTATACTTTTTGG+AGG | + | chr3_3:58113823-58113842 | Msa0460630:CDS | 30.0% |
| AGTGAATAATGAACCAAAAG+TGG | + | chr3_3:58113848-58113867 | Msa0460630:CDS | 30.0% | |
| ! | ATGTGATGAGAATTTGAGAT+AGG | + | chr3_3:58113944-58113963 | Msa0460630:intron | 30.0% |
| GTCAAAATTTCTCGATTGAT+TGG | - | chr3_3:58114096-58114115 | None:intergenic | 30.0% | |
| !! | TTAATGTAGCTTATTTTCGG+CGG | + | chr3_3:58114300-58114319 | Msa0460630:three_prime_UTR | 30.0% |
| CAAATATTGGAAGGCAATCT+TGG | + | chr3_3:58109749-58109768 | Msa0460630:CDS | 35.0% | |
| TTACATATTCCCAAACTCCA+GGG | - | chr3_3:58110241-58110260 | None:intergenic | 35.0% | |
| TTTACATATTCCCAAACTCC+AGG | - | chr3_3:58110242-58110261 | None:intergenic | 35.0% | |
| ! | AGGTAATCGGTTGATGTTAT+AGG | - | chr3_3:58110293-58110312 | None:intergenic | 35.0% |
| AACCGATTACCTCAAATTCA+AGG | + | chr3_3:58110301-58110320 | Msa0460630:CDS | 35.0% | |
| ! | AATGCACTTGAAGCAGATTT+TGG | + | chr3_3:58110477-58110496 | Msa0460630:CDS | 35.0% |
| TTGCCTTCTTCAATTGGAAA+TGG | + | chr3_3:58110531-58110550 | Msa0460630:CDS | 35.0% | |
| AGTCCATTTCCAATTGAAGA+AGG | - | chr3_3:58110537-58110556 | None:intergenic | 35.0% | |
| ! | ACACATGTACACCAATGTTT+TGG | + | chr3_3:58110704-58110723 | Msa0460630:intron | 35.0% |
| GTTATGGTTCAATCACAGTT+CGG | + | chr3_3:58110758-58110777 | Msa0460630:intron | 35.0% | |
| CCTTGGTTCAAAATCATCAT+AGG | - | chr3_3:58110971-58110990 | None:intergenic | 35.0% | |
| ! | CCTATGATGATTTTGAACCA+AGG | + | chr3_3:58110968-58110987 | Msa0460630:CDS | 35.0% |
| AAGTGCAAAGAGATTTACCT+TGG | - | chr3_3:58110988-58111007 | None:intergenic | 35.0% | |
| TCTCTTTGCACTTCATAAAG+TGG | + | chr3_3:58110995-58111014 | Msa0460630:intron | 35.0% | |
| TCATTCATAGGTTTAAGCAG+TGG | + | chr3_3:58111057-58111076 | Msa0460630:intron | 35.0% | |
| CATTCATAGGTTTAAGCAGT+GGG | + | chr3_3:58111058-58111077 | Msa0460630:intron | 35.0% | |
| ATTCATAGGTTTAAGCAGTG+GGG | + | chr3_3:58111059-58111078 | Msa0460630:intron | 35.0% | |
| GTTGTGATCTTCTCTATTCA+TGG | + | chr3_3:58111212-58111231 | Msa0460630:CDS | 35.0% | |
| TCGAGAACATGCAATTATGT+CGG | - | chr3_3:58111383-58111402 | None:intergenic | 35.0% | |
| TGGATGCATTCACTTAAAAG+GGG | - | chr3_3:58111488-58111507 | None:intergenic | 35.0% | |
| !!! | TTAACATGTGCTTGGTTTTG+CGG | - | chr3_3:58111591-58111610 | None:intergenic | 35.0% |
| AGTGAATCCTCAAATTCTTG+TGG | + | chr3_3:58111733-58111752 | Msa0460630:CDS | 35.0% | |
| AACCAAATGCAATCAGGAAT+TGG | + | chr3_3:58111885-58111904 | Msa0460630:CDS | 35.0% | |
| TTCCAATTCCTGATTGCATT+TGG | - | chr3_3:58111890-58111909 | None:intergenic | 35.0% | |
| TGAGTAAACCTCTCAAGATA+AGG | - | chr3_3:58112009-58112028 | None:intergenic | 35.0% | |
| TTATCTTGAGAGGTTTACTC+AGG | + | chr3_3:58112008-58112027 | Msa0460630:CDS | 35.0% | |
| ATCCTGCATTTGATGAGATA+TGG | + | chr3_3:58112060-58112079 | Msa0460630:intron | 35.0% | |
| GTGAAAACGCGTTTATAAGT+TGG | + | chr3_3:58112084-58112103 | Msa0460630:intron | 35.0% | |
| ! | AAAACGCGTTTATAAGTTGG+AGG | + | chr3_3:58112087-58112106 | Msa0460630:intron | 35.0% |
| ! | GTTCCATTTGACTAGTTCTT+CGG | + | chr3_3:58112138-58112157 | Msa0460630:intron | 35.0% |
| AGTTCTTCGGTTCATGTTAT+AGG | + | chr3_3:58112151-58112170 | Msa0460630:intron | 35.0% | |
| AACTAAGATTCTCAACCTCA+TGG | + | chr3_3:58112181-58112200 | Msa0460630:CDS | 35.0% | |
| GGAAAACCAGATCTCATTAT+AGG | + | chr3_3:58112206-58112225 | Msa0460630:CDS | 35.0% | |
| AAATTTGGCAGCTTCTCTTA+TGG | + | chr3_3:58112244-58112263 | Msa0460630:CDS | 35.0% | |
| TAGCAAACTTAGGATAACTC+AGG | + | chr3_3:58112268-58112287 | Msa0460630:CDS | 35.0% | |
| ACTGCATGAGCTAATAAATG+AGG | + | chr3_3:58112393-58112412 | Msa0460630:intron | 35.0% | |
| ATGAAGATTCAGATGTCAAG+TGG | + | chr3_3:58112465-58112484 | Msa0460630:CDS | 35.0% | |
| ! | CTTTTGTCTTTCTCAGTGTA+AGG | - | chr3_3:58112932-58112951 | None:intergenic | 35.0% |
| CTTGCCATTGAGAAGATTAT+AGG | - | chr3_3:58113140-58113159 | None:intergenic | 35.0% | |
| CTATAATCTTCTCAATGGCA+AGG | + | chr3_3:58113138-58113157 | Msa0460630:CDS | 35.0% | |
| GATGTTGTGAAGAACATAAC+CGG | + | chr3_3:58113164-58113183 | Msa0460630:CDS | 35.0% | |
| AATGGTATGGCAAGAACAAA+AGG | + | chr3_3:58113195-58113214 | Msa0460630:CDS | 35.0% | |
| ATCAAAAGACAGAGAAGAGA+TGG | + | chr3_3:58113271-58113290 | Msa0460630:CDS | 35.0% | |
| AATTGAAGGGTCAGTTTAGA+TGG | + | chr3_3:58113333-58113352 | Msa0460630:CDS | 35.0% | |
| !! | ATTACTGTTGATGGTGTTTC+TGG | + | chr3_3:58113527-58113546 | Msa0460630:CDS | 35.0% |
| ACATTGGAACATGATTTCAG+CGG | + | chr3_3:58113631-58113650 | Msa0460630:CDS | 35.0% | |
| GATTGCAGCGTATTAATGAA+TGG | + | chr3_3:58113657-58113676 | Msa0460630:CDS | 35.0% | |
| CAGCGTATTAATGAATGGTA+AGG | + | chr3_3:58113662-58113681 | Msa0460630:intron | 35.0% | |
| TGCAAACAAGTTGCTGAATA+TGG | + | chr3_3:58113800-58113819 | Msa0460630:CDS | 35.0% | |
| GCAAACAAGTTGCTGAATAT+GGG | + | chr3_3:58113801-58113820 | Msa0460630:CDS | 35.0% | |
| !!! | TATCTTTGCTTTGCCACTTT+TGG | - | chr3_3:58113864-58113883 | None:intergenic | 35.0% |
| TGGCAAAGCAAAGATACATT+TGG | + | chr3_3:58113868-58113887 | Msa0460630:CDS | 35.0% | |
| AGGGTTAAGATCAAGTATAC+AGG | + | chr3_3:58114277-58114296 | Msa0460630:exon | 35.0% | |
| AATTTCATGGCTTCTGCATC+AGG | + | chr3_3:58109545-58109564 | Msa0460630:exon | 40.0% | |
| ATTTCATGGCTTCTGCATCA+GGG | + | chr3_3:58109546-58109565 | Msa0460630:exon | 40.0% | |
| CAGAGTAGGTACCATATGAA+GGG | + | chr3_3:58109626-58109645 | Msa0460630:CDS | 40.0% | |
| AGAGTAGGTACCATATGAAG+GGG | + | chr3_3:58109627-58109646 | Msa0460630:CDS | 40.0% | |
| TTTGCCAAGTACCTTGAGAA+AGG | + | chr3_3:58109653-58109672 | Msa0460630:CDS | 40.0% | |
| ! | TCTACCTTTCTCAAGGTACT+TGG | - | chr3_3:58109660-58109679 | None:intergenic | 40.0% |
| AGTACCTTGAGAAAGGTAGA+AGG | + | chr3_3:58109660-58109679 | Msa0460630:CDS | 40.0% | |
| TGATCCTTCTACCTTTCTCA+AGG | - | chr3_3:58109667-58109686 | None:intergenic | 40.0% | |
| CTTACTGCAAAGGCAACATA+TGG | - | chr3_3:58110212-58110231 | None:intergenic | 40.0% | |
| CATATGTTGCCTTTGCAGTA+AGG | + | chr3_3:58110210-58110229 | Msa0460630:CDS | 40.0% | |
| GGCAAAGACACAACCTATAT+TGG | + | chr3_3:58110602-58110621 | Msa0460630:CDS | 40.0% | |
| TCAGAGAGACTTCTGAGTTA+TGG | + | chr3_3:58110742-58110761 | Msa0460630:intron | 40.0% | |
| TTCTCCATGTTCATTGGATC+TGG | - | chr3_3:58111161-58111180 | None:intergenic | 40.0% | |
| TTTGGTCAAGCAGATGTTCT+TGG | + | chr3_3:58111239-58111258 | Msa0460630:CDS | 40.0% | |
| ATTGGATCAAGTGAGAGCTT+TGG | + | chr3_3:58111670-58111689 | Msa0460630:CDS | 40.0% | |
| GTTGACAATGATAGGTCACA+AGG | + | chr3_3:58111842-58111861 | Msa0460630:intron | 40.0% | |
| TCAAGGAACCAAATGCAATC+AGG | + | chr3_3:58111879-58111898 | Msa0460630:CDS | 40.0% | |
| GAGTGCTTGGTATCAATGAT+TGG | - | chr3_3:58111913-58111932 | None:intergenic | 40.0% | |
| ! | GTGCCTTTTCAGACAGATAA+AGG | + | chr3_3:58111946-58111965 | Msa0460630:CDS | 40.0% |
| ATAAAGGAATCCTGCGTCAA+TGG | + | chr3_3:58111962-58111981 | Msa0460630:CDS | 40.0% | |
| TAAAGGAATCCTGCGTCAAT+GGG | + | chr3_3:58111963-58111982 | Msa0460630:CDS | 40.0% | |
| GAACCGAAGAACTAGTCAAA+TGG | - | chr3_3:58112144-58112163 | None:intergenic | 40.0% | |
| GAGGTTGAGAATCTTAGTTG+TGG | - | chr3_3:58112180-58112199 | None:intergenic | 40.0% | |
| AAGATTCTCAACCTCATGGA+AGG | + | chr3_3:58112185-58112204 | Msa0460630:CDS | 40.0% | |
| CTCTTATGGCTAGCAAACTT+AGG | + | chr3_3:58112258-58112277 | Msa0460630:CDS | 40.0% | |
| AATGAGGTTGCTTGAAAACC+AGG | + | chr3_3:58112409-58112428 | Msa0460630:intron | 40.0% | |
| ATGAGGTTGCTTGAAAACCA+GGG | + | chr3_3:58112410-58112429 | Msa0460630:intron | 40.0% | |
| GGCATGAGAAGTGATACTTA+GGG | - | chr3_3:58112502-58112521 | None:intergenic | 40.0% | |
| TGGCATGAGAAGTGATACTT+AGG | - | chr3_3:58112503-58112522 | None:intergenic | 40.0% | |
| TCACTTCTCATGCCAATTCA+TGG | + | chr3_3:58112508-58112527 | Msa0460630:CDS | 40.0% | |
| ! | CAATTGTATCGGCCATGAAT+TGG | - | chr3_3:58112523-58112542 | None:intergenic | 40.0% |
| CATCATAACCAGCACATATC+AGG | + | chr3_3:58112562-58112581 | Msa0460630:CDS | 40.0% | |
| AGCAATTTCCTGATATGTGC+TGG | - | chr3_3:58112573-58112592 | None:intergenic | 40.0% | |
| AGCACATATCAGGAAATTGC+TGG | + | chr3_3:58112572-58112591 | Msa0460630:CDS | 40.0% | |
| CATATCAGGAAATTGCTGGA+AGG | + | chr3_3:58112576-58112595 | Msa0460630:CDS | 40.0% | |
| TTATCAGTGTGTGTCATGTC+CGG | - | chr3_3:58112666-58112685 | None:intergenic | 40.0% | |
| !! | TATCATCAGTGTCGACATGA+CGG | - | chr3_3:58112701-58112720 | None:intergenic | 40.0% |
| AAACAACTCTGCATAGTCCT+GGG | - | chr3_3:58112841-58112860 | None:intergenic | 40.0% | |
| ! | GACTATGCAGAGTTGTTTCA+GGG | + | chr3_3:58112843-58112862 | Msa0460630:CDS | 40.0% |
| ! | ACATAACCGGTTTAGTCGAA+TGG | + | chr3_3:58113177-58113196 | Msa0460630:CDS | 40.0% |
| GAACAAAAGGTTGAGAAGCT+TGG | + | chr3_3:58113208-58113227 | Msa0460630:CDS | 40.0% | |
| TTGGTGAACCTTGTCATAGT+TGG | + | chr3_3:58113227-58113246 | Msa0460630:CDS | 40.0% | |
| GAGAAGAGATGGCAGAAATA+AGG | + | chr3_3:58113282-58113301 | Msa0460630:CDS | 40.0% | |
| TCGATTTATTGCCGACACAA+AGG | + | chr3_3:58113397-58113416 | Msa0460630:CDS | 40.0% | |
| CGATTTATTGCCGACACAAA+GGG | + | chr3_3:58113398-58113417 | Msa0460630:CDS | 40.0% | |
| CCAAATGCTTCATACAAAGC+AGG | - | chr3_3:58113437-58113456 | None:intergenic | 40.0% | |
| ! | CCTGCTTTGTATGAAGCATT+TGG | + | chr3_3:58113434-58113453 | Msa0460630:CDS | 40.0% |
| GTCATTGAAGCAATGAACTG+TGG | + | chr3_3:58113464-58113483 | Msa0460630:CDS | 40.0% | |
| CCATGGTTAGTAGCAAAAGT+TGG | - | chr3_3:58113494-58113513 | None:intergenic | 40.0% | |
| ! | CCAACTTTTGCTACTAACCA+TGG | + | chr3_3:58113491-58113510 | Msa0460630:CDS | 40.0% |
| ! | ACTTTTGCTACTAACCATGG+TGG | + | chr3_3:58113494-58113513 | Msa0460630:CDS | 40.0% |
| TTCCATATCGATCCTCTCAA+TGG | + | chr3_3:58113551-58113570 | Msa0460630:CDS | 40.0% | |
| ! | GTAAAGTGGATTCGACACAT+TGG | + | chr3_3:58113615-58113634 | Msa0460630:CDS | 40.0% |
| GGTTGTTGAGGTTCATCAAT+TGG | - | chr3_3:58114016-58114035 | None:intergenic | 40.0% | |
| TCAGAAAACAAGGAACAAGC+AGG | + | chr3_3:58114062-58114081 | Msa0460630:CDS | 40.0% | |
| CCTGCAGTAGCAAAACAATA+GGG | - | chr3_3:58114238-58114257 | None:intergenic | 40.0% | |
| TTGATCTTAACCCTGTGATC+TGG | - | chr3_3:58114271-58114290 | None:intergenic | 40.0% | |
| GCAGAGTAGGTACCATATGA+AGG | + | chr3_3:58109625-58109644 | Msa0460630:CDS | 45.0% | |
| TGGCAAAACACCCCTTCATA+TGG | - | chr3_3:58109640-58109659 | None:intergenic | 45.0% | |
| ACTGCAAAGGCAACATATGG+TGG | - | chr3_3:58110209-58110228 | None:intergenic | 45.0% | |
| AAGCTTTGCAACTGAGCTCA+GGG | - | chr3_3:58110893-58110912 | None:intergenic | 45.0% | |
| CTCAGTTGCAAAGCTTCAGA+TGG | + | chr3_3:58110897-58110916 | Msa0460630:CDS | 45.0% | |
| ATTCCTTTCAGCACTTCCAG+TGG | + | chr3_3:58110939-58110958 | Msa0460630:CDS | 45.0% | |
| !! | TATCCACTGGAAGTGCTGAA+AGG | - | chr3_3:58110945-58110964 | None:intergenic | 45.0% |
| !! | TCATCATAGGGAGTATCCAC+TGG | - | chr3_3:58110958-58110977 | None:intergenic | 45.0% |
| !!! | AAGCAGTGGGGTTTTGAAAG+TGG | + | chr3_3:58111071-58111090 | Msa0460630:CDS | 45.0% |
| !!! | AGTGGGGTTTTGAAAGTGGA+TGG | + | chr3_3:58111075-58111094 | Msa0460630:CDS | 45.0% |
| !!! | GTGGGGTTTTGAAAGTGGAT+GGG | + | chr3_3:58111076-58111095 | Msa0460630:CDS | 45.0% |
| !!! | TGGGGTTTTGAAAGTGGATG+GGG | + | chr3_3:58111077-58111096 | Msa0460630:CDS | 45.0% |
| AGATACTGCAGGAAGAGTGA+AGG | + | chr3_3:58111100-58111119 | Msa0460630:CDS | 45.0% | |
| ! | TGTTCATTGGATCTGGAGCT+TGG | - | chr3_3:58111154-58111173 | None:intergenic | 45.0% |
| AGCTCCAGATCCAATGAACA+TGG | + | chr3_3:58111154-58111173 | Msa0460630:CDS | 45.0% | |
| TAGAAATGTTACCTGTCCGC+CGG | - | chr3_3:58111276-58111295 | None:intergenic | 45.0% | |
| ! | CATTTGGTTCCTTGAGCATC+AGG | - | chr3_3:58111874-58111893 | None:intergenic | 45.0% |
| !!! | GCGTAGAATTTTCGAGTGCT+TGG | - | chr3_3:58111926-58111945 | None:intergenic | 45.0% |
| CGCCATATCTCATCAAATGC+AGG | - | chr3_3:58112065-58112084 | None:intergenic | 45.0% | |
| !!! | GATCTGGTTTTCCTTCCATG+AGG | - | chr3_3:58112199-58112218 | None:intergenic | 45.0% |
| AAGCATGTGCTATAGTTCCC+TGG | - | chr3_3:58112430-58112449 | None:intergenic | 45.0% | |
| GCTTGCAGCAAAGATAAACC+TGG | + | chr3_3:58112785-58112804 | Msa0460630:intron | 45.0% | |
| GCATGGCTTTCATATTGTCC+AGG | - | chr3_3:58112806-58112825 | None:intergenic | 45.0% | |
| ! | CTGGGAGTGTAAATGTTGCA+TGG | - | chr3_3:58112823-58112842 | None:intergenic | 45.0% |
| CATGCAACATTTACACTCCC+AGG | + | chr3_3:58112821-58112840 | Msa0460630:CDS | 45.0% | |
| GAAACAACTCTGCATAGTCC+TGG | - | chr3_3:58112842-58112861 | None:intergenic | 45.0% | |
| ! | GGACTATGCAGAGTTGTTTC+AGG | + | chr3_3:58112842-58112861 | Msa0460630:CDS | 45.0% |
| GGTGCAGCTATGTTGAACTT+AGG | - | chr3_3:58112884-58112903 | None:intergenic | 45.0% | |
| AAGTTCAACATAGCTGCACC+TGG | + | chr3_3:58112884-58112903 | Msa0460630:CDS | 45.0% | |
| ! | ACCGGTTTAGTCGAATGGTA+TGG | + | chr3_3:58113182-58113201 | Msa0460630:CDS | 45.0% |
| GCCATACCATTCGACTAAAC+CGG | - | chr3_3:58113186-58113205 | None:intergenic | 45.0% | |
| GTGAACCTTGTCATAGTTGG+AGG | + | chr3_3:58113230-58113249 | Msa0460630:CDS | 45.0% | |
| AGAAGCCTCCAACTATGACA+AGG | - | chr3_3:58113238-58113257 | None:intergenic | 45.0% | |
| CTCTCCATTGCGATGTCTAT+CGG | - | chr3_3:58113372-58113391 | None:intergenic | 45.0% | |
| CACAAAAGCTCCCTTTGTGT+CGG | - | chr3_3:58113411-58113430 | None:intergenic | 45.0% | |
| CCATCAACAGTAATTTCCGC+TGG | - | chr3_3:58113521-58113540 | None:intergenic | 45.0% | |
| CCAGCGGAAATTACTGTTGA+TGG | + | chr3_3:58113518-58113537 | Msa0460630:CDS | 45.0% | |
| CTCCATTGAGAGGATCGATA+TGG | - | chr3_3:58113556-58113575 | None:intergenic | 45.0% | |
| ! | CTTGATTCGTCTCCATTGAG+AGG | - | chr3_3:58113566-58113585 | None:intergenic | 45.0% |
| !!! | TTTTCTGAGACTCTGCTGCT+TGG | - | chr3_3:58114050-58114069 | None:intergenic | 45.0% |
| CAGCAGAGTCTCAGAAAACA+AGG | + | chr3_3:58114052-58114071 | Msa0460630:CDS | 45.0% | |
| !! | CCCTATTGTTTTGCTACTGC+AGG | + | chr3_3:58114235-58114254 | Msa0460630:intron | 45.0% |
| GCCTGCAGTAGCAAAACAAT+AGG | - | chr3_3:58114239-58114258 | None:intergenic | 45.0% | |
| CTACTCTGCTTCGTTGCATC+TGG | - | chr3_3:58109614-58109633 | None:intergenic | 50.0% | |
| CAGATGCAACGAAGCAGAGT+AGG | + | chr3_3:58109612-58109631 | Msa0460630:CDS | 50.0% | |
| TATTCCCAAACTCCAGGGTC+TGG | - | chr3_3:58110236-58110255 | None:intergenic | 50.0% | |
| GAAGCTTTGCAACTGAGCTC+AGG | - | chr3_3:58110894-58110913 | None:intergenic | 50.0% | |
| GCTTCAGATGGCACTAACAG+TGG | + | chr3_3:58110909-58110928 | Msa0460630:CDS | 50.0% | |
| !! | GTTCTTGGCTTGCCAGATAC+CGG | + | chr3_3:58111254-58111273 | Msa0460630:CDS | 50.0% |
| AGGCTCATACCTGATGCTCA+AGG | + | chr3_3:58111862-58111881 | Msa0460630:CDS | 50.0% | |
| AGAAGAACTGACACAGCCAC+CGG | + | chr3_3:58112644-58112663 | Msa0460630:intron | 50.0% | |
| TAGACAGTTTGGTCAGCACC+AGG | - | chr3_3:58112905-58112924 | None:intergenic | 50.0% | |
| CAGACCGATAGACATCGCAA+TGG | + | chr3_3:58113365-58113384 | Msa0460630:CDS | 50.0% | |
| TACTAACCATGGTGGTCCAG+CGG | + | chr3_3:58113502-58113521 | Msa0460630:CDS | 50.0% | |
| TAATTTCCGCTGGACCACCA+TGG | - | chr3_3:58113511-58113530 | None:intergenic | 50.0% | |
| TGGAACATGATTTCAGCGGC+AGG | + | chr3_3:58113635-58113654 | Msa0460630:CDS | 50.0% | |
| ! | GAGTTGGACACTGGTTGTTG+AGG | - | chr3_3:58114028-58114047 | None:intergenic | 50.0% |
| TTTGCTACTGCAGGCGTTCA+AGG | + | chr3_3:58114244-58114263 | Msa0460630:intron | 50.0% | |
| CGTTCAAGGTCCAGATCACA+GGG | + | chr3_3:58114258-58114277 | Msa0460630:CDS | 50.0% | |
| !! | AGGGTCTGGCCTTACTGCAA+AGG | - | chr3_3:58110222-58110241 | None:intergenic | 55.0% |
| TTTGCAGTAAGGCCAGACCC+TGG | + | chr3_3:58110221-58110240 | Msa0460630:CDS | 55.0% | |
| TAAGGCCAGACCCTGGAGTT+TGG | + | chr3_3:58110228-58110247 | Msa0460630:CDS | 55.0% | |
| AAGGCCAGACCCTGGAGTTT+GGG | + | chr3_3:58110229-58110248 | Msa0460630:CDS | 55.0% | |
| AGTGGATGGGGAGATACTGC+AGG | + | chr3_3:58111089-58111108 | Msa0460630:CDS | 55.0% | |
| AGCGAGAAACCCATTGACGC+AGG | - | chr3_3:58111975-58111994 | None:intergenic | 55.0% | |
| TCAGTGTGTGTCATGTCCGG+TGG | - | chr3_3:58112663-58112682 | None:intergenic | 55.0% | |
| ! | TGCTGCTTGGAGTTGGACAC+TGG | - | chr3_3:58114037-58114056 | None:intergenic | 55.0% |
| ! | GAGACTCTGCTGCTTGGAGT+TGG | - | chr3_3:58114044-58114063 | None:intergenic | 55.0% |
| GCGTTCAAGGTCCAGATCAC+AGG | + | chr3_3:58114257-58114276 | Msa0460630:CDS | 55.0% | |
| !! | CTTGGCTTGCCAGATACCGG+CGG | + | chr3_3:58111257-58111276 | Msa0460630:CDS | 60.0% |
| GTTACCTGTCCGCCGGTATC+TGG | - | chr3_3:58111269-58111288 | None:intergenic | 60.0% | |
| CTTGCCAGATACCGGCGGAC+AGG | + | chr3_3:58111262-58111281 | Msa0460630:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 58109522 | 58114426 | 58109522 | ID=Msa0460630;Name=Msa0460630 |
| chr3_3 | mRNA | 58109522 | 58114426 | 58109522 | ID=Msa0460630-mRNA-1;Parent=Msa0460630;Name=Msa0460630-mRNA-1;_AED=0.11;_eAED=0.11;_QI=29|1|1|1|1|1|14|142|842 |
| chr3_3 | exon | 58109522 | 58109793 | 58109522 | ID=Msa0460630-mRNA-1:exon:12028;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58110191 | 58110345 | 58110191 | ID=Msa0460630-mRNA-1:exon:12029;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58110464 | 58110656 | 58110464 | ID=Msa0460630-mRNA-1:exon:12030;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58110871 | 58110989 | 58110871 | ID=Msa0460630-mRNA-1:exon:12031;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58111067 | 58111283 | 58111067 | ID=Msa0460630-mRNA-1:exon:12032;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58111659 | 58111754 | 58111659 | ID=Msa0460630-mRNA-1:exon:12033;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58111856 | 58112029 | 58111856 | ID=Msa0460630-mRNA-1:exon:12034;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58112173 | 58112289 | 58112173 | ID=Msa0460630-mRNA-1:exon:12035;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58112431 | 58112597 | 58112431 | ID=Msa0460630-mRNA-1:exon:12036;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58112793 | 58113017 | 58112793 | ID=Msa0460630-mRNA-1:exon:12037;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58113112 | 58113678 | 58113112 | ID=Msa0460630-mRNA-1:exon:12038;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58113782 | 58113920 | 58113782 | ID=Msa0460630-mRNA-1:exon:12039;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58113995 | 58114083 | 58113995 | ID=Msa0460630-mRNA-1:exon:12040;Parent=Msa0460630-mRNA-1 |
| chr3_3 | exon | 58114257 | 58114426 | 58114257 | ID=Msa0460630-mRNA-1:exon:12041;Parent=Msa0460630-mRNA-1 |
| chr3_3 | five_prime_UTR | 58109522 | 58109550 | 58109522 | ID=Msa0460630-mRNA-1:five_prime_utr;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58109551 | 58109793 | 58109551 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58110191 | 58110345 | 58110191 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58110464 | 58110656 | 58110464 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58110871 | 58110989 | 58110871 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58111067 | 58111283 | 58111067 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58111659 | 58111754 | 58111659 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58111856 | 58112029 | 58111856 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58112173 | 58112289 | 58112173 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58112431 | 58112597 | 58112431 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58112793 | 58113017 | 58112793 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58113112 | 58113678 | 58113112 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58113782 | 58113920 | 58113782 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58113995 | 58114083 | 58113995 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | CDS | 58114257 | 58114284 | 58114257 | ID=Msa0460630-mRNA-1:cds;Parent=Msa0460630-mRNA-1 |
| chr3_3 | three_prime_UTR | 58114285 | 58114426 | 58114285 | ID=Msa0460630-mRNA-1:three_prime_utr;Parent=Msa0460630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
