Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0099340 | XP_003588934.3 | 98.278 | 987 | 15 | 2 | 1 | 986 | 1 | 986 | 0.0 | 1958 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0099340 | sp|Q9SMY8|FBL15_ARATH | 65.423 | 911 | 290 | 8 | 80 | 980 | 89 | 984 | 0.0 | 1123 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0099340 | A0A396JIU4 | 98.278 | 987 | 15 | 2 | 1 | 986 | 1 | 986 | 0.0 | 1958 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0099340 | Msa0099420 | 0.987618 | 6.495956e-171 | -8.615850e-47 |
Msa0099340 | Msa0611220 | 0.808496 | 3.010358e-50 | -8.615850e-47 |
Msa0099340 | Msa0622220 | 0.804505 | 2.092219e-49 | -8.615850e-47 |
Msa0099340 | Msa1114680 | 0.802084 | 6.635283e-49 | -8.615850e-47 |
Msa0099340 | Msa1268230 | 0.818473 | 1.924451e-52 | -8.615850e-47 |
Msa0099340 | Msa1362200 | 0.807692 | 4.463908e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0099340 | MtrunA17_Chr1g0150971 | 98.278 | 987 | 15 | 2 | 1 | 986 | 1 | 986 | 0.0 | 1958 |
Msa0099340 | MtrunA17_Chr1g0150991 | 84.347 | 658 | 75 | 2 | 193 | 850 | 11 | 640 | 0.0 | 1097 |
Msa0099340 | MtrunA17_Chr7g0272131 | 27.021 | 470 | 279 | 15 | 343 | 770 | 142 | 589 | 6.51e-20 | 95.5 |
Msa0099340 | MtrunA17_Chr4g0004901 | 26.847 | 555 | 315 | 21 | 301 | 811 | 140 | 647 | 1.13e-17 | 88.2 |
Msa0099340 | MtrunA17_Chr1g0149351 | 25.366 | 410 | 242 | 15 | 339 | 699 | 188 | 582 | 1.70e-16 | 84.3 |
Msa0099340 | MtrunA17_Chr1g0149351 | 26.154 | 455 | 255 | 17 | 377 | 774 | 180 | 610 | 1.84e-13 | 74.7 |
Msa0099340 | MtrunA17_Chr2g0286991 | 25.048 | 523 | 306 | 18 | 471 | 977 | 132 | 584 | 1.19e-14 | 78.2 |
Msa0099340 | MtrunA17_Chr2g0286991 | 26.464 | 427 | 256 | 18 | 338 | 722 | 164 | 574 | 2.06e-14 | 77.4 |
Msa0099340 | MtrunA17_Chr2g0286991 | 26.013 | 469 | 278 | 22 | 398 | 807 | 126 | 584 | 8.69e-13 | 72.4 |
Msa0099340 | MtrunA17_Chr3g0137771 | 23.820 | 445 | 229 | 15 | 327 | 699 | 174 | 580 | 1.47e-13 | 75.1 |
Msa0099340 | MtrunA17_Chr1g0151001 | 84.615 | 39 | 6 | 0 | 947 | 985 | 1 | 39 | 2.43e-13 | 65.1 |
Msa0099340 | MtrunA17_Chr4g0063841 | 24.074 | 378 | 228 | 13 | 339 | 672 | 179 | 541 | 1.48e-11 | 68.6 |
Msa0099340 | MtrunA17_Chr1g0159531 | 24.910 | 277 | 165 | 10 | 169 | 426 | 9 | 261 | 4.96e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0099340 | AT4G33210.1 | 65.423 | 911 | 290 | 8 | 80 | 980 | 89 | 984 | 0.0 | 1123 |
Msa0099340 | AT4G15475.1 | 24.486 | 486 | 284 | 17 | 551 | 977 | 123 | 584 | 1.09e-16 | 85.5 |
Msa0099340 | AT4G15475.1 | 22.710 | 524 | 305 | 20 | 229 | 722 | 121 | 574 | 4.90e-14 | 76.6 |
Msa0099340 | AT4G15475.1 | 23.885 | 381 | 217 | 12 | 274 | 620 | 246 | 587 | 9.23e-12 | 69.3 |
Msa0099340 | AT2G25490.1 | 24.124 | 485 | 288 | 19 | 335 | 772 | 172 | 623 | 2.25e-14 | 77.8 |
Msa0099340 | AT2G25490.1 | 26.392 | 485 | 267 | 18 | 342 | 775 | 151 | 596 | 4.87e-13 | 73.6 |
Msa0099340 | AT5G25350.1 | 25.635 | 394 | 231 | 13 | 339 | 683 | 166 | 546 | 1.61e-12 | 72.0 |
Msa0099340 | AT5G25350.1 | 23.849 | 478 | 282 | 13 | 372 | 817 | 153 | 580 | 1.35e-11 | 68.9 |
Msa0099340 | AT5G27920.1 | 23.950 | 476 | 295 | 12 | 342 | 770 | 97 | 552 | 1.65e-11 | 68.9 |
Msa0099340 | AT5G01720.1 | 24.000 | 425 | 263 | 13 | 364 | 736 | 154 | 570 | 3.77e-11 | 67.8 |
Find 220 sgRNAs with CRISPR-Local
Find 473 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAACACATCTTCGAAAATT+AGG | 0.085012 | 1_3:-5496579 | Msa0099340:five_prime_UTR |
AATTTAGGTCTTCTCATTTC+TGG | 0.102063 | 1_3:-5495340 | Msa0099340:intron |
ATGCGGAGTATGTTTAATTT+TGG | 0.107392 | 1_3:+5492048 | None:intergenic |
ATGAAAACCTTCCTAATATT+TGG | 0.132121 | 1_3:+5490772 | None:intergenic |
GGTCTTCGGTCTCTCAATTT+AGG | 0.148162 | 1_3:-5492078 | Msa0099340:CDS |
TGAATCTCTGGTGCTGTTTA+TGG | 0.211607 | 1_3:-5496519 | Msa0099340:CDS |
CAGGAGTTGGATTTGTCTTA+TGG | 0.225295 | 1_3:-5491027 | Msa0099340:CDS |
TGATTGATGGGTTTGATTCC+TGG | 0.254850 | 1_3:-5496327 | Msa0099340:CDS |
CAACACATCTTCGAAAATTA+GGG | 0.266130 | 1_3:-5496578 | Msa0099340:five_prime_UTR |
AAATCAAGCAGAGCTAAATT+TGG | 0.267048 | 1_3:+5491725 | None:intergenic |
GCAGATAAGCTCAGCGAGTA+TGG | 0.274859 | 1_3:-5489517 | Msa0099340:intron |
AGAGAGAAAGTGAGGGGAAA+TGG | 0.287044 | 1_3:+5496643 | None:intergenic |
CTTGAAGGTACTAAAGTTGC+AGG | 0.289199 | 1_3:-5491115 | Msa0099340:intron |
GTCTTCGGTCTCTCAATTTA+GGG | 0.300756 | 1_3:-5492077 | Msa0099340:CDS |
CCGCATTGAAGCGATGTTAA+TGG | 0.303108 | 1_3:-5492031 | Msa0099340:CDS |
TGAGCTAACATGCCCTTATC+TGG | 0.308157 | 1_3:-5492742 | Msa0099340:CDS |
GCGTGGGTTGTCCAAATATT+AGG | 0.308828 | 1_3:-5490783 | Msa0099340:CDS |
TGGTGCTTTACCAGCTCTTC+AGG | 0.309631 | 1_3:-5491046 | Msa0099340:CDS |
ATGTCAAGAGAGGACAATTA+AGG | 0.315111 | 1_3:+5491965 | None:intergenic |
GACTTTCCGGACCGGAATTC+GGG | 0.321991 | 1_3:+5496251 | None:intergenic |
AAATTTCGTGCAGCATGTTC+TGG | 0.324114 | 1_3:-5489492 | Msa0099340:CDS |
TCATCAGCAACAGGACTTTC+CGG | 0.325567 | 1_3:+5496238 | None:intergenic |
ATCTATGCTGGCTTAATCTA+AGG | 0.328261 | 1_3:-5490663 | Msa0099340:intron |
AGGACCTTCTATTTATTTGC+TGG | 0.329200 | 1_3:-5494964 | Msa0099340:CDS |
TTGAAGACCATGAGATTGTT+AGG | 0.337302 | 1_3:-5495512 | Msa0099340:CDS |
TTTATATTGTTGTGTTTGTT+TGG | 0.344802 | 1_3:-5489328 | Msa0099340:three_prime_UTR |
CTTCTGCTTGAACTTGATAT+AGG | 0.345354 | 1_3:-5494495 | Msa0099340:CDS |
ATTGACCAATCTATTCCTTC+AGG | 0.349829 | 1_3:-5490520 | Msa0099340:intron |
TGATTTATCATACACTTTCC+TGG | 0.349909 | 1_3:-5491708 | Msa0099340:CDS |
ATTGGATGGTTGTGATCATT+TGG | 0.352347 | 1_3:-5492709 | Msa0099340:CDS |
TGGAAAATTGAAGGGTGAAT+TGG | 0.352998 | 1_3:+5496604 | None:intergenic |
GATCCACTTCTTGTAAAGAT+TGG | 0.357169 | 1_3:+5493531 | None:intergenic |
ATAACAATTTACAATACATT+AGG | 0.357522 | 1_3:+5489353 | None:intergenic |
TGAATATGCATGATTTAAAC+TGG | 0.360921 | 1_3:-5490927 | Msa0099340:CDS |
CTTACACGTGTGAGTTTAAA+CGG | 0.367445 | 1_3:-5490955 | Msa0099340:CDS |
CTTCAGCAACTGTTCCTCAT+TGG | 0.371781 | 1_3:-5490568 | Msa0099340:intron |
ACAAGAAAGAAGCTCTTCTA+TGG | 0.373730 | 1_3:+5490987 | None:intergenic |
GCTACAGCATTGAGCATATC+AGG | 0.374719 | 1_3:-5494984 | Msa0099340:CDS |
GGACTTTCCGGACCGGAATT+CGG | 0.376593 | 1_3:+5496250 | None:intergenic |
ATACTGCCCAAACATATCTT+TGG | 0.381624 | 1_3:-5494316 | Msa0099340:CDS |
AGTAATAATAATAATTGTTA+TGG | 0.383288 | 1_3:-5495615 | Msa0099340:CDS |
CACACCTCCAAAGATATGTT+TGG | 0.388572 | 1_3:+5494309 | None:intergenic |
GGGGAAATGGAAGGTGGAAA+TGG | 0.391981 | 1_3:+5496656 | None:intergenic |
AATATTAATGACTCAATTAG+TGG | 0.392177 | 1_3:+5491800 | None:intergenic |
GCACAACATTGTCCTAATCT+TGG | 0.392387 | 1_3:-5494354 | Msa0099340:CDS |
TCAAATTAGCTGACAGAGAA+AGG | 0.397336 | 1_3:+5490710 | None:intergenic |
ACATTGGGAAGAGGACAGAT+AGG | 0.397458 | 1_3:-5494827 | Msa0099340:CDS |
GTCTTAGAATTGTCAACATT+GGG | 0.400988 | 1_3:+5494181 | None:intergenic |
ATGGACTCTGTTCCCTGCAT+TGG | 0.402487 | 1_3:-5491751 | Msa0099340:CDS |
AGGCACACTTGGCAATAAAT+CGG | 0.403187 | 1_3:-5489382 | Msa0099340:three_prime_UTR |
TGACTCTTGTAAACAACTAA+AGG | 0.404503 | 1_3:-5491666 | Msa0099340:intron |
AGTTGAGGTTCTGAAGTAAT+CGG | 0.409969 | 1_3:+5490806 | None:intergenic |
CTAAATTTGGGAGCCAATGC+AGG | 0.411003 | 1_3:+5491738 | None:intergenic |
GAGCAAAGTGAACTACTCTA+TGG | 0.414803 | 1_3:-5495670 | Msa0099340:CDS |
AGGGTGAATTGGAGAGAGAA+AGG | 0.416071 | 1_3:+5496615 | None:intergenic |
GTCACTCACGCATGAATCTC+TGG | 0.418205 | 1_3:-5496531 | Msa0099340:exon |
TTCTCTGTCAGCTAATTTGA+AGG | 0.430609 | 1_3:-5490707 | Msa0099340:CDS |
AATCAAGCAGAGCTAAATTT+GGG | 0.435350 | 1_3:+5491726 | None:intergenic |
CTACTTCTCAGGTTGGTCTT+CGG | 0.438635 | 1_3:-5492092 | Msa0099340:intron |
TGAAGGCAATCTCTTTGTTA+AGG | 0.438710 | 1_3:-5494938 | Msa0099340:intron |
TTATCTGGAGAAGGTCATAT+TGG | 0.439926 | 1_3:-5492727 | Msa0099340:CDS |
TGCCCATCGATTGGGTTAGA+TGG | 0.440347 | 1_3:-5491770 | Msa0099340:CDS |
GCCGCTGTAATCCCGAATTC+CGG | 0.444840 | 1_3:-5496262 | Msa0099340:CDS |
TATTTATTTGCTGGTCATGA+AGG | 0.444953 | 1_3:-5494955 | Msa0099340:CDS |
CGAGCGCCGTACAGCAGGCC+AGG | 0.450701 | 1_3:+5496309 | None:intergenic |
ATGCCAATCTTTACAAGAAG+TGG | 0.451112 | 1_3:-5493534 | Msa0099340:CDS |
TGGGAACAGTGTGCTGTTGA+TGG | 0.451344 | 1_3:+5490748 | None:intergenic |
GGGTGAATTGGAGAGAGAAA+GGG | 0.452060 | 1_3:+5496616 | None:intergenic |
ATGCTCAATGCTGTAGCATT+CGG | 0.453434 | 1_3:+5494990 | None:intergenic |
GAAGATGAAGAAATTGAAGC+TGG | 0.454897 | 1_3:-5496382 | Msa0099340:CDS |
TACAGATGATCTCTTGCATA+TGG | 0.458184 | 1_3:-5495481 | Msa0099340:intron |
GGATGGATCTGATCGGATCT+TGG | 0.461453 | 1_3:+5496677 | None:intergenic |
AATATCAACGATTCCACACT+TGG | 0.462162 | 1_3:-5494755 | Msa0099340:CDS |
TAATGTCCTGCCCATCGATT+GGG | 0.464085 | 1_3:-5491778 | Msa0099340:CDS |
ACGTTTGCAGAATATTAGAT+TGG | 0.465159 | 1_3:-5493952 | Msa0099340:CDS |
TCTGATGTGTTCTGAAGAAT+AGG | 0.465867 | 1_3:-5489206 | Msa0099340:three_prime_UTR |
ACACCTCCAAAGATATGTTT+GGG | 0.467816 | 1_3:+5494310 | None:intergenic |
GCATCAAGAAAACCAAGATT+AGG | 0.470512 | 1_3:+5494342 | None:intergenic |
TGAGTGTAACTTTGATGATC+TGG | 0.470837 | 1_3:-5495700 | Msa0099340:CDS |
TGATGTTCGCTTCTGTCCTA+AGG | 0.472083 | 1_3:-5489660 | Msa0099340:intron |
GTCGCTTGAACCTCTTTACA+AGG | 0.475184 | 1_3:-5491070 | Msa0099340:CDS |
GGGCATCACTTCTGCGTCAA+TGG | 0.475389 | 1_3:-5494145 | Msa0099340:CDS |
TTGTCCTCTCTTGACATCAC+TGG | 0.475453 | 1_3:-5491959 | Msa0099340:CDS |
ATGACCAGCAAATAAATAGA+AGG | 0.477031 | 1_3:+5494960 | None:intergenic |
TAACAATTATTATTATTACT+AGG | 0.480221 | 1_3:+5495618 | None:intergenic |
ATATGACCTTCTCCAGATAA+GGG | 0.480400 | 1_3:+5492730 | None:intergenic |
TCTATTGACTTCGGTGTCGT+TGG | 0.480572 | 1_3:-5493982 | Msa0099340:CDS |
AGGGGTAGAGAGAGAAAGTG+AGG | 0.481356 | 1_3:+5496635 | None:intergenic |
TTTACCAGCTCTTCAGGAGT+TGG | 0.481593 | 1_3:-5491040 | Msa0099340:CDS |
TCACGGTTCTCATCAGCAAC+AGG | 0.481783 | 1_3:+5496229 | None:intergenic |
GATCGGATCTTGGAGGAAGA+TGG | 0.483471 | 1_3:+5496687 | None:intergenic |
AATATGACCTTCTCCAGATA+AGG | 0.484456 | 1_3:+5492729 | None:intergenic |
GGTGAATTGGAGAGAGAAAG+GGG | 0.484885 | 1_3:+5496617 | None:intergenic |
CTCAATTAGTGGACAGGCAC+GGG | 0.485784 | 1_3:+5491811 | None:intergenic |
CCAGAGTTTGTAAGCAGTGG+CGG | 0.486315 | 1_3:-5495293 | Msa0099340:CDS |
GCTGCACGAATAGCAGCATC+AGG | 0.490307 | 1_3:+5494456 | None:intergenic |
AATTGAAGCTGGGAATTATG+AGG | 0.491329 | 1_3:-5496371 | Msa0099340:CDS |
ATCTAACCCAATCGATGGGC+AGG | 0.494620 | 1_3:+5491772 | None:intergenic |
TCTCTCAACATATTACAATC+AGG | 0.496231 | 1_3:+5494782 | None:intergenic |
AATAACCTGAAGGAATAGAT+TGG | 0.496884 | 1_3:+5490515 | None:intergenic |
CGTTTAAACTCACACGTGTA+AGG | 0.497322 | 1_3:+5490956 | None:intergenic |
TGTCAAGAGAGGACAATTAA+GGG | 0.498049 | 1_3:+5491966 | None:intergenic |
CCGATCGAGCGCCGTACAGC+AGG | 0.498303 | 1_3:+5496304 | None:intergenic |
TGTAGAGCTTGACTTCAGTT+CGG | 0.499255 | 1_3:-5492824 | Msa0099340:intron |
TTAGTCAGTCTCTCCCTTGG+TGG | 0.499323 | 1_3:-5492786 | Msa0099340:CDS |
GAAGAGAAGAGATGTTGGTT+TGG | 0.502520 | 1_3:+5496720 | None:intergenic |
ATGCCCTCAACTAGTGAAGC+TGG | 0.504093 | 1_3:-5494424 | Msa0099340:CDS |
TAGCTTGTCTCAATCTATGC+TGG | 0.504946 | 1_3:-5490675 | Msa0099340:CDS |
GGCACACTTGGCAATAAATC+GGG | 0.505217 | 1_3:-5489381 | Msa0099340:three_prime_UTR |
CGTAGGAAGTTGCAATGGAT+AGG | 0.505696 | 1_3:+5490860 | None:intergenic |
CCTGCTGTACGGCGCTCGAT+CGG | 0.507201 | 1_3:-5496304 | Msa0099340:CDS |
TTAATGTCCTGCCCATCGAT+TGG | 0.507879 | 1_3:-5491779 | Msa0099340:CDS |
AGTCTTAGAATTGTCAACAT+TGG | 0.509202 | 1_3:+5494180 | None:intergenic |
ACAGCATAAAATGTATATCA+AGG | 0.510547 | 1_3:+5489171 | None:intergenic |
TGCTTGTTCACTTGGAGAGA+AGG | 0.511142 | 1_3:-5489402 | Msa0099340:three_prime_UTR |
ACTTGGAGAGAAGGCACACT+TGG | 0.511322 | 1_3:-5489393 | Msa0099340:three_prime_UTR |
AGCTCACAGTTCTATGTTGG+AGG | 0.512932 | 1_3:-5494115 | Msa0099340:intron |
GAAATTAGCACTGCAAAAGC+AGG | 0.514012 | 1_3:-5493582 | Msa0099340:CDS |
TCGTCGTCGTTGTTCATACC+AGG | 0.516178 | 1_3:+5496433 | None:intergenic |
AAATGGAAGGTGGAAATGGA+TGG | 0.516213 | 1_3:+5496660 | None:intergenic |
AAATCCAACTCCTGAAGAGC+TGG | 0.522527 | 1_3:+5491036 | None:intergenic |
AGACCATGAGATTGTTAGGA+TGG | 0.522538 | 1_3:-5495508 | Msa0099340:CDS |
ATGTCCAGCTTCACTAGTTG+AGG | 0.524268 | 1_3:+5494420 | None:intergenic |
TGCGTTGGTGTGTGGTGGTG+AGG | 0.525110 | 1_3:-5495586 | Msa0099340:CDS |
CATTGGGAAGAGGACAGATA+GGG | 0.526364 | 1_3:-5494826 | Msa0099340:CDS |
CACGCTTATGAGACGAATCA+CGG | 0.527076 | 1_3:+5496212 | None:intergenic |
GATAAAGCATCACCTGCAAA+AGG | 0.527185 | 1_3:+5491930 | None:intergenic |
CTGCCCAAACATATCTTTGG+AGG | 0.527460 | 1_3:-5494313 | Msa0099340:intron |
TTGGTGTGTGGTGGTGAGGA+TGG | 0.527558 | 1_3:-5495582 | Msa0099340:CDS |
AATGATGTGGAAGACGGTGG+AGG | 0.528685 | 1_3:-5495558 | Msa0099340:CDS |
TTGATTCCTGGCCTGCTGTA+CGG | 0.530063 | 1_3:-5496315 | Msa0099340:CDS |
GTTGAGGTTCTGAAGTAATC+GGG | 0.533869 | 1_3:+5490807 | None:intergenic |
ATGCTTATGCCAGGTAACTC+AGG | 0.533873 | 1_3:+5490883 | None:intergenic |
CTGGAGAAGGTCATATTGGA+TGG | 0.534634 | 1_3:-5492723 | Msa0099340:CDS |
CCGCCACTGCTTACAAACTC+TGG | 0.535912 | 1_3:+5495293 | None:intergenic |
GGGAAGTTTCCTGAGTTACC+TGG | 0.537422 | 1_3:-5490892 | Msa0099340:CDS |
CAAGATGACACAGTCTCTCA+TGG | 0.541185 | 1_3:+5494705 | None:intergenic |
AAGATGAAGAAATTGAAGCT+GGG | 0.541996 | 1_3:-5496381 | Msa0099340:CDS |
TTGTTTGGCATATAGAAATG+AGG | 0.544892 | 1_3:-5489313 | Msa0099340:three_prime_UTR |
TTGAATACTGTTGCCAAGTG+TGG | 0.547986 | 1_3:+5494742 | None:intergenic |
TAATGACTCAATTAGTGGAC+AGG | 0.549074 | 1_3:+5491805 | None:intergenic |
TATATCAAAATGTACTATGT+TGG | 0.549378 | 1_3:-5489690 | Msa0099340:CDS |
GTGTCATGCGAATACAAGTC+AGG | 0.549671 | 1_3:-5494667 | Msa0099340:intron |
AGAAAGTGAGGGGAAATGGA+AGG | 0.550153 | 1_3:+5496647 | None:intergenic |
AGGAATAGATTGGTCAATCT+CGG | 0.550623 | 1_3:+5490525 | None:intergenic |
TGTAATCCCGAATTCCGGTC+CGG | 0.553122 | 1_3:-5496257 | Msa0099340:CDS |
CAGAGTTTGTAAGCAGTGGC+GGG | 0.554404 | 1_3:-5495292 | Msa0099340:CDS |
GGGGTAGAGAGAGAAAGTGA+GGG | 0.554849 | 1_3:+5496636 | None:intergenic |
CAGATAAGCTCAGCGAGTAT+GGG | 0.555131 | 1_3:-5489516 | Msa0099340:CDS |
CTGCCAGAGTTTGTAAGCAG+TGG | 0.556788 | 1_3:-5495296 | Msa0099340:CDS |
CAATTGCAGTCTATTGACTT+CGG | 0.557565 | 1_3:-5493991 | Msa0099340:CDS |
ATGGTCTCACTTGAGTTGAA+AGG | 0.559000 | 1_3:-5492012 | Msa0099340:CDS |
TCGTTAGTCAGTCTCTCCCT+TGG | 0.560848 | 1_3:-5492789 | Msa0099340:CDS |
AACTGCTCGGCAACCACCAA+GGG | 0.561608 | 1_3:+5492773 | None:intergenic |
TGGATCTGATCGGATCTTGG+AGG | 0.563884 | 1_3:+5496680 | None:intergenic |
AAGAGGTTCAAGCGACGAGT+CGG | 0.565502 | 1_3:+5491077 | None:intergenic |
TGTCCAGCTTCACTAGTTGA+GGG | 0.565601 | 1_3:+5494421 | None:intergenic |
GTTACTGCGCTTCAATGACA+TGG | 0.565980 | 1_3:+5494545 | None:intergenic |
ACAAGCAGTCATCAGTGAGT+TGG | 0.567428 | 1_3:+5491843 | None:intergenic |
ATGATGTGGAAGACGGTGGA+GGG | 0.570065 | 1_3:-5495557 | Msa0099340:CDS |
GTCATTGAAGCGCAGTAACA+TGG | 0.570348 | 1_3:-5494541 | Msa0099340:CDS |
GGTAATGATGTGGAAGACGG+TGG | 0.571021 | 1_3:-5495561 | Msa0099340:CDS |
AGTCCATCTAACCCAATCGA+TGG | 0.572678 | 1_3:+5491767 | None:intergenic |
TCACTTGAGTTGAAAGGATG+TGG | 0.574179 | 1_3:-5492006 | Msa0099340:CDS |
TTGGACAACCCACGCAGTTG+AGG | 0.574282 | 1_3:+5490791 | None:intergenic |
AAGTGAGGGGAAATGGAAGG+TGG | 0.574361 | 1_3:+5496650 | None:intergenic |
AAAGCACCACCCTTGTAAAG+AGG | 0.574646 | 1_3:+5491060 | None:intergenic |
AGGTGTCAACTTGTTGAACC+TGG | 0.576954 | 1_3:-5496451 | Msa0099340:CDS |
ATATCAAGTTCAAGCAGAAG+AGG | 0.577593 | 1_3:+5494498 | None:intergenic |
AAGCTGTAATTCACGACGAA+AGG | 0.578285 | 1_3:-5496471 | Msa0099340:CDS |
AATAGCTCACAGTTCTATGT+TGG | 0.580737 | 1_3:-5494118 | Msa0099340:CDS |
AACATGCCCTTATCTGGAGA+AGG | 0.580884 | 1_3:-5492736 | Msa0099340:CDS |
TTGAAGTGATATTGATCCGG+TGG | 0.584608 | 1_3:+5493701 | None:intergenic |
CTAAGACTTCATAGCTGTGA+GGG | 0.585297 | 1_3:-5494165 | Msa0099340:CDS |
GATCCATCCTAACAATCTCA+TGG | 0.586694 | 1_3:+5495505 | None:intergenic |
ATGGATAGGATGCTTATGCC+AGG | 0.587259 | 1_3:+5490874 | None:intergenic |
AATTTGAAGTGATATTGATC+CGG | 0.587951 | 1_3:+5493698 | None:intergenic |
TCTGTCAGCTAATTTGAAGG+AGG | 0.588127 | 1_3:-5490704 | Msa0099340:CDS |
AAACAGGCTGCAGAGTCACC+AGG | 0.590036 | 1_3:+5491690 | None:intergenic |
CTTGAACCTCTTTACAAGGG+TGG | 0.591774 | 1_3:-5491066 | Msa0099340:CDS |
CTAACTGCTCTGTACTCCAC+CGG | 0.592910 | 1_3:-5493717 | Msa0099340:CDS |
GGGTTGTCCAAATATTAGGA+AGG | 0.595090 | 1_3:-5490779 | Msa0099340:CDS |
CTTCAGAACCTCAACTGCGT+GGG | 0.595625 | 1_3:-5490799 | Msa0099340:CDS |
GTCCATCTAACCCAATCGAT+GGG | 0.595753 | 1_3:+5491768 | None:intergenic |
AGGTTCTGAAGTAATCGGGT+GGG | 0.597859 | 1_3:+5490811 | None:intergenic |
AGCAACAGGACTTTCCGGAC+CGG | 0.600596 | 1_3:+5496243 | None:intergenic |
GTGTTGAAATGGAAAATTGA+AGG | 0.602662 | 1_3:+5496595 | None:intergenic |
ACTCAATTAGTGGACAGGCA+CGG | 0.604442 | 1_3:+5491810 | None:intergenic |
TGGGTTGCTCATTTGACACA+TGG | 0.607349 | 1_3:+5490830 | None:intergenic |
TATCAAGTTCAAGCAGAAGA+GGG | 0.608116 | 1_3:+5494499 | None:intergenic |
GTGTTGAAGAGAAGAGATGT+TGG | 0.611227 | 1_3:+5496715 | None:intergenic |
GCTCAAGAGTAGTAACTGCT+CGG | 0.614721 | 1_3:+5492760 | None:intergenic |
CTTGAGTTGAAAGGATGTGG+TGG | 0.616766 | 1_3:-5492003 | Msa0099340:CDS |
GGGTAGAGAGAGAAAGTGAG+GGG | 0.618569 | 1_3:+5496637 | None:intergenic |
GAGGTTCTGAAGTAATCGGG+TGG | 0.620687 | 1_3:+5490810 | None:intergenic |
TGGTGAGGATGGTAATGATG+TGG | 0.622988 | 1_3:-5495571 | Msa0099340:CDS |
ATTGGGAAGAGGACAGATAG+GGG | 0.626388 | 1_3:-5494825 | Msa0099340:CDS |
GATGGTAATGATGTGGAAGA+CGG | 0.631591 | 1_3:-5495564 | Msa0099340:CDS |
ACTTCAGAACCTCAACTGCG+TGG | 0.633478 | 1_3:-5490800 | Msa0099340:CDS |
TGGAAATGGATGGATCTGAT+CGG | 0.639938 | 1_3:+5496670 | None:intergenic |
GGCGTGCAATATTGACGAGG+AGG | 0.640334 | 1_3:-5489726 | Msa0099340:CDS |
GAATATGCATGATTTAAACT+GGG | 0.641737 | 1_3:-5490926 | Msa0099340:CDS |
TGTTGAAATGGAAAATTGAA+GGG | 0.641875 | 1_3:+5496596 | None:intergenic |
TAACTGCTCGGCAACCACCA+AGG | 0.642627 | 1_3:+5492772 | None:intergenic |
TAAATTTGGGAGCCAATGCA+GGG | 0.642950 | 1_3:+5491739 | None:intergenic |
AGAACTAGTGATTTCAACAT+GGG | 0.643077 | 1_3:+5493446 | None:intergenic |
AATCTAATATTCTGCAAACG+TGG | 0.648461 | 1_3:+5493954 | None:intergenic |
TCGCTTGAACCTCTTTACAA+GGG | 0.652251 | 1_3:-5491069 | Msa0099340:CDS |
TAGCTTCAAAACTTCCAATG+AGG | 0.654384 | 1_3:+5490554 | None:intergenic |
ACTAGTTCTTGATAATTGCG+AGG | 0.661698 | 1_3:-5493432 | Msa0099340:intron |
GCATCCAGTGATGTCAAGAG+AGG | 0.670741 | 1_3:+5491955 | None:intergenic |
TTACAGTCGAGGACATGTGT+AGG | 0.670828 | 1_3:-5495019 | Msa0099340:intron |
AAGAACTAGTGATTTCAACA+TGG | 0.675696 | 1_3:+5493445 | None:intergenic |
TCTAAGACTTCATAGCTGTG+AGG | 0.677515 | 1_3:-5494166 | Msa0099340:CDS |
ACCGGAATTCGGGATTACAG+CGG | 0.685212 | 1_3:+5496261 | None:intergenic |
TTAGGCGTGCAATATTGACG+AGG | 0.699170 | 1_3:-5489729 | Msa0099340:intron |
AATATGCATGATTTAAACTG+GGG | 0.702634 | 1_3:-5490925 | Msa0099340:CDS |
ATATGCATGATTTAAACTGG+GGG | 0.730286 | 1_3:-5490924 | Msa0099340:CDS |
CCATTAACATCGCTTCAATG+CGG | 0.731007 | 1_3:+5492031 | None:intergenic |
AAGGGAGAGACTGACTAACG+AGG | 0.754568 | 1_3:+5492791 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATGCATTTTTTTTTTATT+TGG | - | chr1_3:5489760-5489779 | Msa0099340:intron | 10.0% |
!!! | AATGCATTTTTTTTTTATTT+GGG | - | chr1_3:5489761-5489780 | Msa0099340:intron | 10.0% |
!! | TAACAATTATTATTATTACT+AGG | + | chr1_3:5490292-5490311 | None:intergenic | 10.0% |
!! | AGTAATAATAATAATTGTTA+TGG | - | chr1_3:5490292-5490311 | Msa0099340:intron | 10.0% |
!! | AAAATTAATCAGATAAATTA+AGG | + | chr1_3:5492100-5492119 | None:intergenic | 10.0% |
!!! | ACATTTTTTTTTTTCATATT+CGG | - | chr1_3:5493049-5493068 | Msa0099340:intron | 10.0% |
!! | AATTAAAATTACAGAATAAT+AGG | - | chr1_3:5493394-5493413 | Msa0099340:intron | 10.0% |
!! | TTTGATAAAATTTGTAAAAT+AGG | - | chr1_3:5493729-5493748 | Msa0099340:CDS | 10.0% |
!! | AAGGTTTAAAAATAATAAAT+GGG | + | chr1_3:5495181-5495200 | None:intergenic | 10.0% |
!! | AAAGGTTTAAAAATAATAAA+TGG | + | chr1_3:5495182-5495201 | None:intergenic | 10.0% |
!!! | TATCTTTTTAGAAAATTATA+CGG | - | chr1_3:5495872-5495891 | Msa0099340:intron | 10.0% |
!!! | TACATTTTTCTTAAAAATTT+AGG | - | chr1_3:5495956-5495975 | Msa0099340:intron | 10.0% |
!!! | ACATTTTTCTTAAAAATTTA+GGG | - | chr1_3:5495957-5495976 | Msa0099340:intron | 10.0% |
!! | AATGATACCAATATAAAAAA+TGG | + | chr1_3:5490470-5490489 | None:intergenic | 15.0% |
!!! | TTTCTTTATTTGTGAAATTT+AGG | - | chr1_3:5490552-5490571 | Msa0099340:CDS | 15.0% |
!!! | TATCTGATTAATTTTTTGAA+TGG | - | chr1_3:5492105-5492124 | Msa0099340:intron | 15.0% |
!!! | CATGAACATATATATTATTT+TGG | - | chr1_3:5492500-5492519 | Msa0099340:intron | 15.0% |
!!! | TATATTTTGACAATTCAAAT+GGG | - | chr1_3:5492576-5492595 | Msa0099340:intron | 15.0% |
!!! | TATAACATAAAAAAGTACAT+TGG | + | chr1_3:5492736-5492755 | None:intergenic | 15.0% |
!!! | ATGTTTTATATTCGTATTAA+TGG | - | chr1_3:5493024-5493043 | Msa0099340:intron | 15.0% |
!! | GAAGAAGAAATAAAAAATTT+CGG | + | chr1_3:5493339-5493358 | None:intergenic | 15.0% |
!! | ATATACTTCAAAATTTATTG+TGG | - | chr1_3:5495490-5495509 | Msa0099340:CDS | 15.0% |
!! | ATTCTATTGTATATACTTAT+TGG | - | chr1_3:5495570-5495589 | Msa0099340:CDS | 15.0% |
!! | TTCTATTGTATATACTTATT+GGG | - | chr1_3:5495571-5495590 | Msa0099340:CDS | 15.0% |
!!! | ATATTTTGAAATGTTGATTT+CGG | - | chr1_3:5496288-5496307 | Msa0099340:CDS | 15.0% |
!! | ATAACAATTTACAATACATT+AGG | + | chr1_3:5496557-5496576 | None:intergenic | 15.0% |
!!! | GAAAGAACCATTTTTTATAT+TGG | - | chr1_3:5490460-5490479 | Msa0099340:intron | 20.0% |
!!! | TTTTTGTGTGTTATGATATT+TGG | - | chr1_3:5490508-5490527 | Msa0099340:intron | 20.0% |
!!! | TTTTGTGTGTTATGATATTT+GGG | - | chr1_3:5490509-5490528 | Msa0099340:intron | 20.0% |
!!! | AGAGTTTGAATTTTGAAAAT+CGG | - | chr1_3:5490665-5490684 | Msa0099340:CDS | 20.0% |
!! | AGTATGACAAATATCAATAA+TGG | + | chr1_3:5492038-5492057 | None:intergenic | 20.0% |
!! | TAATCAGATAAATTAAGGAT+TGG | + | chr1_3:5492095-5492114 | None:intergenic | 20.0% |
!!! | TATATTATTTTGGCATTTCT+TGG | - | chr1_3:5492510-5492529 | Msa0099340:intron | 20.0% |
!!! | CTATATTTTGACAATTCAAA+TGG | - | chr1_3:5492575-5492594 | Msa0099340:intron | 20.0% |
!! | AAATTTCAATCAGTAAGTTA+TGG | + | chr1_3:5492693-5492712 | None:intergenic | 20.0% |
!! | ATTGGTATTATAGAAACAAT+GGG | + | chr1_3:5492718-5492737 | None:intergenic | 20.0% |
!! | AATATTAATGACTCAATTAG+TGG | + | chr1_3:5494110-5494129 | None:intergenic | 20.0% |
!! | CTGATGAAAAATCAAATAAA+TGG | + | chr1_3:5494531-5494550 | None:intergenic | 20.0% |
!! | TTCTTTAGACAAAATAATCT+TGG | + | chr1_3:5494660-5494679 | None:intergenic | 20.0% |
!!! | AAACATTATAATTTGCTATG+AGG | + | chr1_3:5495309-5495328 | None:intergenic | 20.0% |
!!! | AATTTAGAATTTACAACTGT+CGG | - | chr1_3:5495774-5495793 | Msa0099340:intron | 20.0% |
!!! | TTTCTTAAAAATTTAGGGTA+TGG | - | chr1_3:5495962-5495981 | Msa0099340:intron | 20.0% |
!!! | TTCTTAAAAATTTAGGGTAT+GGG | - | chr1_3:5495963-5495982 | Msa0099340:intron | 20.0% |
!!! | TCAAATGTCACATTTATTTT+AGG | + | chr1_3:5496007-5496026 | None:intergenic | 20.0% |
!! | TATATCAAAATGTACTATGT+TGG | - | chr1_3:5496217-5496236 | Msa0099340:CDS | 20.0% |
!! | AACAATCATATGCAAAATAA+AGG | + | chr1_3:5496324-5496343 | None:intergenic | 20.0% |
!!! | ATCATTTATGGGATATTTTA+TGG | - | chr1_3:5496361-5496380 | Msa0099340:CDS | 20.0% |
!!! | TTATAATCTATGATGTTTTG+TGG | - | chr1_3:5496482-5496501 | Msa0099340:CDS | 20.0% |
!! | TTTATATTGTTGTGTTTGTT+TGG | - | chr1_3:5496579-5496598 | Msa0099340:five_prime_UTR | 20.0% |
!! | AAAACATCAAAAACTTATTG+TGG | + | chr1_3:5496636-5496655 | None:intergenic | 20.0% |
! | TGTTGAAATGGAAAATTGAA+GGG | + | chr1_3:5489314-5489333 | None:intergenic | 25.0% |
! | TGAATTGTTGTGAAATGAAT+TGG | - | chr1_3:5489815-5489834 | Msa0099340:intron | 25.0% |
!!! | GAGTTTGAATTTTGAAAATC+GGG | - | chr1_3:5490666-5490685 | Msa0099340:CDS | 25.0% |
!!! | ACCTTTTAACATTCAAGTTT+TGG | - | chr1_3:5490768-5490787 | Msa0099340:CDS | 25.0% |
!!! | CCTTTTAACATTCAAGTTTT+GGG | - | chr1_3:5490769-5490788 | Msa0099340:CDS | 25.0% |
!!! | TGATTTGTTTCATTCTTTTC+AGG | - | chr1_3:5491042-5491061 | Msa0099340:CDS | 25.0% |
!!! | AATCTTGAGGTTTTAACATT+GGG | - | chr1_3:5491065-5491084 | Msa0099340:CDS | 25.0% |
! | ATTGATACGATAAAAAGTGA+TGG | - | chr1_3:5491305-5491324 | Msa0099340:intron | 25.0% |
!!! | GATGGTTTATTCTTTTTTTC+AGG | - | chr1_3:5491323-5491342 | Msa0099340:intron | 25.0% |
!! | ATGTTATTTGTTCCAGATAT+TGG | - | chr1_3:5491816-5491835 | Msa0099340:CDS | 25.0% |
!! | AATGGAATTTTGTGTTTTCT+GGG | + | chr1_3:5492020-5492039 | None:intergenic | 25.0% |
!! | TAATGGAATTTTGTGTTTTC+TGG | + | chr1_3:5492021-5492040 | None:intergenic | 25.0% |
!!! | AATTTTTTGAATGGTTTCCT+TGG | - | chr1_3:5492114-5492133 | Msa0099340:intron | 25.0% |
!! | AATTTGAAGTGATATTGATC+CGG | + | chr1_3:5492212-5492231 | None:intergenic | 25.0% |
! | TACTATACAATATGAGAATG+TGG | + | chr1_3:5492273-5492292 | None:intergenic | 25.0% |
! | TAAATACAGTAAGAATTGTG+TGG | + | chr1_3:5492632-5492651 | None:intergenic | 25.0% |
! | CATTGGTATTATAGAAACAA+TGG | + | chr1_3:5492719-5492738 | None:intergenic | 25.0% |
!!! | AGTTTCTGAAATGGTATTTT+TGG | - | chr1_3:5492775-5492794 | Msa0099340:CDS | 25.0% |
! | AATAAAAAATGTTTCAGCAG+TGG | - | chr1_3:5492925-5492944 | Msa0099340:intron | 25.0% |
! | ATAAAAAATGTTTCAGCAGT+GGG | - | chr1_3:5492926-5492945 | Msa0099340:intron | 25.0% |
! | ATTAGGTTTCTTTAAATTCC+TGG | - | chr1_3:5492986-5493005 | Msa0099340:intron | 25.0% |
!! | TTAAATTCCTGGTATTTTGT+CGG | - | chr1_3:5492997-5493016 | Msa0099340:intron | 25.0% |
! | ATATATCAGTATCACTTACA+GGG | + | chr1_3:5493240-5493259 | None:intergenic | 25.0% |
! | AATATATCAGTATCACTTAC+AGG | + | chr1_3:5493241-5493260 | None:intergenic | 25.0% |
!! | AATAATCGAAGTACTCAATA+GGG | + | chr1_3:5493311-5493330 | None:intergenic | 25.0% |
!! | TAATAATCGAAGTACTCAAT+AGG | + | chr1_3:5493312-5493331 | None:intergenic | 25.0% |
! | TTCATATATTTCATTCCTAG+AGG | - | chr1_3:5493470-5493489 | Msa0099340:CDS | 25.0% |
! | AGTAACGATTTGTATCTATT+GGG | + | chr1_3:5493579-5493598 | None:intergenic | 25.0% |
! | TCAAATCTTTACTAAGAAAG+TGG | + | chr1_3:5493714-5493733 | None:intergenic | 25.0% |
!! | GCTTTTATTAAAACATAACG+TGG | - | chr1_3:5494393-5494412 | Msa0099340:CDS | 25.0% |
! | AACGTGGTAATAATGTTAAT+TGG | - | chr1_3:5494409-5494428 | Msa0099340:CDS | 25.0% |
!!! | GTAACATTTTTGTTTCTTGA+AGG | - | chr1_3:5494777-5494796 | Msa0099340:CDS | 25.0% |
! | TGAATATGCATGATTTAAAC+TGG | - | chr1_3:5494980-5494999 | Msa0099340:CDS | 25.0% |
! | GAATATGCATGATTTAAACT+GGG | - | chr1_3:5494981-5495000 | Msa0099340:CDS | 25.0% |
! | AATATGCATGATTTAAACTG+GGG | - | chr1_3:5494982-5495001 | Msa0099340:CDS | 25.0% |
! | ATGAAAACCTTCCTAATATT+TGG | + | chr1_3:5495138-5495157 | None:intergenic | 25.0% |
! | AGATAAGAATAATAACCTGA+AGG | + | chr1_3:5495405-5495424 | None:intergenic | 25.0% |
!! | ACAAGTGAATTTTACCAAAT+AGG | - | chr1_3:5495687-5495706 | Msa0099340:CDS | 25.0% |
!! | TTACATTTTATAGCTGTCAT+TGG | - | chr1_3:5495842-5495861 | Msa0099340:intron | 25.0% |
!! | TCTTAAAAATTTAGGGTATG+GGG | - | chr1_3:5495964-5495983 | Msa0099340:intron | 25.0% |
! | GATATTCGTCAAATTATTTG+AGG | - | chr1_3:5496025-5496044 | Msa0099340:intron | 25.0% |
! | TTAACACAACAATGAATCAA+AGG | + | chr1_3:5496107-5496126 | None:intergenic | 25.0% |
!!! | TTGGACAATTTGGTTTTTTT+AGG | - | chr1_3:5496160-5496179 | Msa0099340:intron | 25.0% |
! | GATGTTCTTCAATCATTTAT+GGG | - | chr1_3:5496350-5496369 | Msa0099340:CDS | 25.0% |
! | ACAGCATAAAATGTATATCA+AGG | + | chr1_3:5496739-5496758 | None:intergenic | 25.0% |
TAAAAACGATGTCGTTGAAA+TGG | - | chr1_3:5489109-5489128 | Msa0099340:three_prime_UTR | 30.0% | |
TCCTCTTCTAACAAAAAAGT+AGG | - | chr1_3:5489136-5489155 | Msa0099340:three_prime_UTR | 30.0% | |
!!! | TCCTACTTTTTTGTTAGAAG+AGG | + | chr1_3:5489140-5489159 | None:intergenic | 30.0% |
GTGTTGAAATGGAAAATTGA+AGG | + | chr1_3:5489315-5489334 | None:intergenic | 30.0% | |
! | TTTTCGAAGATGTGTTGAAA+TGG | + | chr1_3:5489326-5489345 | None:intergenic | 30.0% |
TCAACACATCTTCGAAAATT+AGG | - | chr1_3:5489328-5489347 | Msa0099340:three_prime_UTR | 30.0% | |
CAACACATCTTCGAAAATTA+GGG | - | chr1_3:5489329-5489348 | Msa0099340:three_prime_UTR | 30.0% | |
AAGATGAAGAAATTGAAGCT+GGG | - | chr1_3:5489526-5489545 | Msa0099340:intron | 30.0% | |
! | GGAATTATGAGGAGAATTTT+CGG | - | chr1_3:5489547-5489566 | Msa0099340:intron | 30.0% |
TTGTGAAATGAATTGGAAAG+TGG | - | chr1_3:5489822-5489841 | Msa0099340:intron | 30.0% | |
! | ACATGCATTGTTATTAGAGA+AGG | - | chr1_3:5490051-5490070 | Msa0099340:intron | 30.0% |
TTGAGAAATGAAGTGAAAAG+TGG | - | chr1_3:5490082-5490101 | Msa0099340:intron | 30.0% | |
! | ATGAAGATGATGATGTTTGA+CGG | - | chr1_3:5490162-5490181 | Msa0099340:intron | 30.0% |
!! | ATGGATTATGCAGATTTTGA+CGG | - | chr1_3:5490256-5490275 | Msa0099340:intron | 30.0% |
AATTTAGGTCTTCTCATTTC+TGG | - | chr1_3:5490567-5490586 | Msa0099340:intron | 30.0% | |
CCCAAAACTTGAATGTTAAA+AGG | + | chr1_3:5490772-5490791 | None:intergenic | 30.0% | |
!!! | AACATTCAAGTTTTGGGTAT+TGG | - | chr1_3:5490775-5490794 | Msa0099340:CDS | 30.0% |
ATGACCAGCAAATAAATAGA+AGG | + | chr1_3:5490950-5490969 | None:intergenic | 30.0% | |
! | TATTTATTTGCTGGTCATGA+AGG | - | chr1_3:5490952-5490971 | Msa0099340:CDS | 30.0% |
AAAGAATGAAACAAATCAGC+TGG | + | chr1_3:5491040-5491059 | None:intergenic | 30.0% | |
!! | GAATCTTGAGGTTTTAACAT+TGG | - | chr1_3:5491064-5491083 | Msa0099340:CDS | 30.0% |
TCTCTCAACATATTACAATC+AGG | + | chr1_3:5491128-5491147 | None:intergenic | 30.0% | |
ATAAAATGACAGCTATGTGT+CGG | + | chr1_3:5491287-5491306 | None:intergenic | 30.0% | |
!!! | AATGACATGGTTTTAAGTTG+CGG | + | chr1_3:5491352-5491371 | None:intergenic | 30.0% |
GTCTTAGAATTGTCAACATT+GGG | + | chr1_3:5491729-5491748 | None:intergenic | 30.0% | |
AGTCTTAGAATTGTCAACAT+TGG | + | chr1_3:5491730-5491749 | None:intergenic | 30.0% | |
ACATCGTTAATACCAATATC+TGG | + | chr1_3:5491831-5491850 | None:intergenic | 30.0% | |
AATCTAATATTCTGCAAACG+TGG | + | chr1_3:5491956-5491975 | None:intergenic | 30.0% | |
ACGTTTGCAGAATATTAGAT+TGG | - | chr1_3:5491955-5491974 | Msa0099340:CDS | 30.0% | |
! | ATGGAATTTTGTGTTTTCTG+GGG | + | chr1_3:5492019-5492038 | None:intergenic | 30.0% |
TTCTTAAACATCAAGTACAC+AGG | + | chr1_3:5492067-5492086 | None:intergenic | 30.0% | |
TAATTTCTGCATAACCACAA+AGG | + | chr1_3:5492312-5492331 | None:intergenic | 30.0% | |
!!! | GTATGTGATGTTTTTAGTGA+CGG | - | chr1_3:5492428-5492447 | Msa0099340:intron | 30.0% |
AGAACTAGTGATTTCAACAT+GGG | + | chr1_3:5492464-5492483 | None:intergenic | 30.0% | |
AAGAACTAGTGATTTCAACA+TGG | + | chr1_3:5492465-5492484 | None:intergenic | 30.0% | |
TGTTGTATTTGTGACAGATT+AGG | - | chr1_3:5492969-5492988 | Msa0099340:intron | 30.0% | |
TTCACATGATCAACTCAAAA+GGG | + | chr1_3:5493361-5493380 | None:intergenic | 30.0% | |
ATATATTTCATTCCTAGAGG+AGG | - | chr1_3:5493473-5493492 | Msa0099340:CDS | 30.0% | |
ATCAGCATGTTAAGATACAT+TGG | - | chr1_3:5493532-5493551 | Msa0099340:CDS | 30.0% | |
GAGTAACGATTTGTATCTAT+TGG | + | chr1_3:5493580-5493599 | None:intergenic | 30.0% | |
TTGGTTACACAAATTTCAGT+GGG | + | chr1_3:5493663-5493682 | None:intergenic | 30.0% | |
!!! | TGTAACCAACTGCTTTTTAT+TGG | - | chr1_3:5493674-5493693 | Msa0099340:intron | 30.0% |
ATCTTTACTAAGAAAGTGGT+TGG | + | chr1_3:5493710-5493729 | None:intergenic | 30.0% | |
!! | TGCGGAGTATGTTTAATTTT+GGG | + | chr1_3:5493861-5493880 | None:intergenic | 30.0% |
!! | ATGCGGAGTATGTTTAATTT+TGG | + | chr1_3:5493862-5493881 | None:intergenic | 30.0% |
AATCAAGCAGAGCTAAATTT+GGG | + | chr1_3:5494184-5494203 | None:intergenic | 30.0% | |
AAATCAAGCAGAGCTAAATT+TGG | + | chr1_3:5494185-5494204 | None:intergenic | 30.0% | |
TGATTTATCATACACTTTCC+TGG | - | chr1_3:5494199-5494218 | Msa0099340:intron | 30.0% | |
TGTTTACAAGAGTCAAAAAC+AGG | + | chr1_3:5494236-5494255 | None:intergenic | 30.0% | |
TGACTCTTGTAAACAACTAA+AGG | - | chr1_3:5494241-5494260 | Msa0099340:intron | 30.0% | |
AAGTGAGGGTTAATGTTATT+TGG | - | chr1_3:5494371-5494390 | Msa0099340:CDS | 30.0% | |
ATACATCATTCCATAATCTG+TGG | + | chr1_3:5494722-5494741 | None:intergenic | 30.0% | |
! | TTCTCTTTTCCTTTTTCTGA+CGG | - | chr1_3:5494755-5494774 | Msa0099340:CDS | 30.0% |
AAAATGTTACCGTCAGAAAA+AGG | + | chr1_3:5494767-5494786 | None:intergenic | 30.0% | |
ATATGCATGATTTAAACTGG+GGG | - | chr1_3:5494983-5495002 | Msa0099340:CDS | 30.0% | |
AATAACCTGAAGGAATAGAT+TGG | + | chr1_3:5495395-5495414 | None:intergenic | 30.0% | |
AACAACAATTATGATGTGTG+TGG | + | chr1_3:5495443-5495462 | None:intergenic | 30.0% | |
ATCTCTATTATGTTGGAACT+GGG | + | chr1_3:5495632-5495651 | None:intergenic | 30.0% | |
AATCTCTATTATGTTGGAAC+TGG | + | chr1_3:5495633-5495652 | None:intergenic | 30.0% | |
AGTCTCAATCTCTATTATGT+TGG | + | chr1_3:5495639-5495658 | None:intergenic | 30.0% | |
TCTAAATTGTAATGCAGTGA+AGG | + | chr1_3:5495762-5495781 | None:intergenic | 30.0% | |
!!! | GTCACATTTATTTTAGGTGA+AGG | + | chr1_3:5496001-5496020 | None:intergenic | 30.0% |
ACAACAATGAATCAAAGGAT+GGG | + | chr1_3:5496102-5496121 | None:intergenic | 30.0% | |
CTTATATGTTTGTTCGTGTT+TGG | - | chr1_3:5496141-5496160 | Msa0099340:intron | 30.0% | |
! | TTTTGCATATGATTGTTGCT+TGG | - | chr1_3:5496327-5496346 | Msa0099340:CDS | 30.0% |
! | TTTGCATATGATTGTTGCTT+GGG | - | chr1_3:5496328-5496347 | Msa0099340:CDS | 30.0% |
GGATGTTCTTCAATCATTTA+TGG | - | chr1_3:5496349-5496368 | Msa0099340:CDS | 30.0% | |
TTGTTTGGCATATAGAAATG+AGG | - | chr1_3:5496594-5496613 | Msa0099340:five_prime_UTR | 30.0% | |
TGGAAAATTGAAGGGTGAAT+TGG | + | chr1_3:5489306-5489325 | None:intergenic | 35.0% | |
! | AACGACGACGAAGATATTTT+CGG | - | chr1_3:5489486-5489505 | Msa0099340:CDS | 35.0% |
GAAGATGAAGAAATTGAAGC+TGG | - | chr1_3:5489525-5489544 | Msa0099340:intron | 35.0% | |
AATTGAAGCTGGGAATTATG+AGG | - | chr1_3:5489536-5489555 | Msa0099340:intron | 35.0% | |
!! | GGAGAGAGTTTTTGATTGAT+GGG | - | chr1_3:5489568-5489587 | Msa0099340:intron | 35.0% |
! | TGAAGATGATGATGTTTGAC+GGG | - | chr1_3:5490163-5490182 | Msa0099340:intron | 35.0% |
! | TGAGTGTAACTTTGATGATC+TGG | - | chr1_3:5490207-5490226 | Msa0099340:intron | 35.0% |
TTGAAGACCATGAGATTGTT+AGG | - | chr1_3:5490395-5490414 | Msa0099340:intron | 35.0% | |
TACAGATGATCTCTTGCATA+TGG | - | chr1_3:5490426-5490445 | Msa0099340:intron | 35.0% | |
CCAAAAATCTTCATGTGTAC+TGG | + | chr1_3:5490644-5490663 | None:intergenic | 35.0% | |
! | CCAGTACACATGAAGATTTT+TGG | - | chr1_3:5490641-5490660 | Msa0099340:intron | 35.0% |
TCAATGTGTAATTACAGTCG+AGG | - | chr1_3:5490877-5490896 | Msa0099340:CDS | 35.0% | |
AGGACCTTCTATTTATTTGC+TGG | - | chr1_3:5490943-5490962 | Msa0099340:CDS | 35.0% | |
TGAAGGCAATCTCTTTGTTA+AGG | - | chr1_3:5490969-5490988 | Msa0099340:CDS | 35.0% | |
!! | CATTCTTTTCAGGAATCTTG+AGG | - | chr1_3:5491052-5491071 | Msa0099340:CDS | 35.0% |
AATATCAACGATTCCACACT+TGG | - | chr1_3:5491152-5491171 | Msa0099340:intron | 35.0% | |
!!! | ATGACATGGTTTTAAGTTGC+GGG | + | chr1_3:5491351-5491370 | None:intergenic | 35.0% |
TATCAAGTTCAAGCAGAAGA+GGG | + | chr1_3:5491411-5491430 | None:intergenic | 35.0% | |
ATATCAAGTTCAAGCAGAAG+AGG | + | chr1_3:5491412-5491431 | None:intergenic | 35.0% | |
CTTCTGCTTGAACTTGATAT+AGG | - | chr1_3:5491412-5491431 | Msa0099340:intron | 35.0% | |
GCATCAAGAAAACCAAGATT+AGG | + | chr1_3:5491568-5491587 | None:intergenic | 35.0% | |
ATACTGCCCAAACATATCTT+TGG | - | chr1_3:5491591-5491610 | Msa0099340:intron | 35.0% | |
ACACCTCCAAAGATATGTTT+GGG | + | chr1_3:5491600-5491619 | None:intergenic | 35.0% | |
CGAACAGACTTAAAAGAGAA+AGG | + | chr1_3:5491703-5491722 | None:intergenic | 35.0% | |
AATAGCTCACAGTTCTATGT+TGG | - | chr1_3:5491789-5491808 | Msa0099340:CDS | 35.0% | |
!! | CAATTGCAGTCTATTGACTT+CGG | - | chr1_3:5491916-5491935 | Msa0099340:intron | 35.0% |
! | TGGAATTTTGTGTTTTCTGG+GGG | + | chr1_3:5492018-5492037 | None:intergenic | 35.0% |
ATGCCAATCTTTACAAGAAG+TGG | - | chr1_3:5492373-5492392 | Msa0099340:intron | 35.0% | |
GATCCACTTCTTGTAAAGAT+TGG | + | chr1_3:5492379-5492398 | None:intergenic | 35.0% | |
! | ACTAGTTCTTGATAATTGCG+AGG | - | chr1_3:5492475-5492494 | Msa0099340:intron | 35.0% |
ACAGTAAGAATTGTGTGGAA+AGG | + | chr1_3:5492627-5492646 | None:intergenic | 35.0% | |
! | CTCACTTGAAGTTTCTGAAA+TGG | - | chr1_3:5492766-5492785 | Msa0099340:CDS | 35.0% |
CTGTCACAAATACAACAAAC+AGG | + | chr1_3:5492966-5492985 | None:intergenic | 35.0% | |
ATATGACCTTCTCCAGATAA+GGG | + | chr1_3:5493180-5493199 | None:intergenic | 35.0% | |
AATATGACCTTCTCCAGATA+AGG | + | chr1_3:5493181-5493200 | None:intergenic | 35.0% | |
TTATCTGGAGAAGGTCATAT+TGG | - | chr1_3:5493180-5493199 | Msa0099340:intron | 35.0% | |
ATTGGATGGTTGTGATCATT+TGG | - | chr1_3:5493198-5493217 | Msa0099340:intron | 35.0% | |
! | CACAGTTCGATTTTTATGAG+AGG | - | chr1_3:5493269-5493288 | Msa0099340:intron | 35.0% |
CTTCACATGATCAACTCAAA+AGG | + | chr1_3:5493362-5493381 | None:intergenic | 35.0% | |
TAACATGCTGATAATAACCG+TGG | + | chr1_3:5493524-5493543 | None:intergenic | 35.0% | |
GAGATTTGTGTTAAGCTTCA+AGG | + | chr1_3:5493614-5493633 | None:intergenic | 35.0% | |
ACACAAATCTCGATTCATTG+TGG | - | chr1_3:5493623-5493642 | Msa0099340:intron | 35.0% | |
GTTGGTTACACAAATTTCAG+TGG | + | chr1_3:5493664-5493683 | None:intergenic | 35.0% | |
CCTGAGAAGTAGATGAAAAA+CGG | + | chr1_3:5493807-5493826 | None:intergenic | 35.0% | |
! | TTTTCATCTACTTCTCAGGT+TGG | - | chr1_3:5493808-5493827 | Msa0099340:intron | 35.0% |
TGTCAAGAGAGGACAATTAA+GGG | + | chr1_3:5493944-5493963 | None:intergenic | 35.0% | |
ATGTCAAGAGAGGACAATTA+AGG | + | chr1_3:5493945-5493964 | None:intergenic | 35.0% | |
! | TGCTTTATCTGCTAGTTTCT+TGG | - | chr1_3:5493991-5494010 | Msa0099340:CDS | 35.0% |
TTGGTTATCCTGCTTATGTA+TGG | - | chr1_3:5494010-5494029 | Msa0099340:intron | 35.0% | |
TACATACTCCATACATAAGC+AGG | + | chr1_3:5494021-5494040 | None:intergenic | 35.0% | |
! | TAATGACTCAATTAGTGGAC+AGG | + | chr1_3:5494105-5494124 | None:intergenic | 35.0% |
!!! | CGTAGATTTGTTTTGAGGAT+GGG | + | chr1_3:5494350-5494369 | None:intergenic | 35.0% |
CCATCCTCAAAACAAATCTA+CGG | - | chr1_3:5494348-5494367 | Msa0099340:CDS | 35.0% | |
!!! | ACTTCCGTAGATTTGTTTTG+AGG | + | chr1_3:5494355-5494374 | None:intergenic | 35.0% |
AAAACAAATCTACGGAAGTG+AGG | - | chr1_3:5494356-5494375 | Msa0099340:CDS | 35.0% | |
AAACAAATCTACGGAAGTGA+GGG | - | chr1_3:5494357-5494376 | Msa0099340:CDS | 35.0% | |
TTGTGTGTCTTCATTGTTTC+AGG | + | chr1_3:5494577-5494596 | None:intergenic | 35.0% | |
ATGAAGACACACAAACTAAC+AGG | - | chr1_3:5494583-5494602 | Msa0099340:intron | 35.0% | |
CACACAAACTAACAGGAAAA+TGG | - | chr1_3:5494590-5494609 | Msa0099340:intron | 35.0% | |
AACAGGAAAATGGAGATAGA+AGG | - | chr1_3:5494600-5494619 | Msa0099340:intron | 35.0% | |
ACAGGAAAATGGAGATAGAA+GGG | - | chr1_3:5494601-5494620 | Msa0099340:intron | 35.0% | |
AAAAGAGTGAGAGGAAAAGT+GGG | - | chr1_3:5494629-5494648 | Msa0099340:intron | 35.0% | |
ACACTTGCTTACTCATTTCT+CGG | - | chr1_3:5494695-5494714 | Msa0099340:CDS | 35.0% | |
ACAAGAAAGAAGCTCTTCTA+TGG | + | chr1_3:5494923-5494942 | None:intergenic | 35.0% | |
CTTACACGTGTGAGTTTAAA+CGG | - | chr1_3:5494952-5494971 | Msa0099340:CDS | 35.0% | |
!! | AGTTGAGGTTCTGAAGTAAT+CGG | + | chr1_3:5495104-5495123 | None:intergenic | 35.0% |
TCAAATTAGCTGACAGAGAA+AGG | + | chr1_3:5495200-5495219 | None:intergenic | 35.0% | |
TTCTCTGTCAGCTAATTTGA+AGG | - | chr1_3:5495200-5495219 | Msa0099340:intron | 35.0% | |
!! | ATCTATGCTGGCTTAATCTA+AGG | - | chr1_3:5495244-5495263 | Msa0099340:CDS | 35.0% |
TAGCTTCAAAACTTCCAATG+AGG | + | chr1_3:5495356-5495375 | None:intergenic | 35.0% | |
! | AGGAATAGATTGGTCAATCT+CGG | + | chr1_3:5495385-5495404 | None:intergenic | 35.0% |
ATTGACCAATCTATTCCTTC+AGG | - | chr1_3:5495387-5495406 | Msa0099340:intron | 35.0% | |
AATAGAGATTGAGACTTGCA+TGG | - | chr1_3:5495643-5495662 | Msa0099340:CDS | 35.0% | |
!!! | ATCCGTCTGCTTTTTAAGAA+TGG | - | chr1_3:5495927-5495946 | Msa0099340:intron | 35.0% |
!!! | TCCGTCTGCTTTTTAAGAAT+GGG | - | chr1_3:5495928-5495947 | Msa0099340:intron | 35.0% |
!!! | TTATTTTAGGTGAAGGACAG+AGG | + | chr1_3:5495994-5496013 | None:intergenic | 35.0% |
CACAACAATGAATCAAAGGA+TGG | + | chr1_3:5496103-5496122 | None:intergenic | 35.0% | |
TTGTTCGTGTTTGGACAATT+TGG | - | chr1_3:5496150-5496169 | Msa0099340:intron | 35.0% | |
!! | TCTGATGTGTTCTGAAGAAT+AGG | - | chr1_3:5496701-5496720 | Msa0099340:five_prime_UTR | 35.0% |
! | GAAGAGAAGAGATGTTGGTT+TGG | + | chr1_3:5489190-5489209 | None:intergenic | 40.0% |
GTGTTGAAGAGAAGAGATGT+TGG | + | chr1_3:5489195-5489214 | None:intergenic | 40.0% | |
TGGAAATGGATGGATCTGAT+CGG | + | chr1_3:5489240-5489259 | None:intergenic | 40.0% | |
AAATGGAAGGTGGAAATGGA+TGG | + | chr1_3:5489250-5489269 | None:intergenic | 40.0% | |
GGTTTCATCCAAAAATGCGA+CGG | - | chr1_3:5489350-5489369 | Msa0099340:three_prime_UTR | 40.0% | |
!! | TGAATCTCTGGTGCTGTTTA+TGG | - | chr1_3:5489388-5489407 | Msa0099340:three_prime_UTR | 40.0% |
AAGCTGTAATTCACGACGAA+AGG | - | chr1_3:5489436-5489455 | Msa0099340:exon | 40.0% | |
!! | CGGAGAGAGTTTTTGATTGA+TGG | - | chr1_3:5489567-5489586 | Msa0099340:intron | 40.0% |
!! | TGATTGATGGGTTTGATTCC+TGG | - | chr1_3:5489580-5489599 | Msa0099340:intron | 40.0% |
CATAGCTGACACCACTTATT+GGG | - | chr1_3:5489992-5490011 | Msa0099340:intron | 40.0% | |
TGACACCACTTATTGGGATA+AGG | - | chr1_3:5489998-5490017 | Msa0099340:intron | 40.0% | |
! | TTATTGGGATAAGGCTTGGT+TGG | - | chr1_3:5490007-5490026 | Msa0099340:intron | 40.0% |
GAGCAAAGTGAACTACTCTA+TGG | - | chr1_3:5490237-5490256 | Msa0099340:intron | 40.0% | |
! | TTGTTATGGCGATTTTGCGT+TGG | - | chr1_3:5490306-5490325 | Msa0099340:intron | 40.0% |
! | GATGGTAATGATGTGGAAGA+CGG | - | chr1_3:5490343-5490362 | Msa0099340:intron | 40.0% |
AGACCATGAGATTGTTAGGA+TGG | - | chr1_3:5490399-5490418 | Msa0099340:intron | 40.0% | |
GATCCATCCTAACAATCTCA+TGG | + | chr1_3:5490405-5490424 | None:intergenic | 40.0% | |
CTCTTGCATATGGTAAGAGA+CGG | - | chr1_3:5490436-5490455 | Msa0099340:intron | 40.0% | |
!!! | GTTTTGGGTATTGGAAATCG+TGG | - | chr1_3:5490784-5490803 | Msa0099340:CDS | 40.0% |
ATGCTCAATGCTGTAGCATT+CGG | + | chr1_3:5490920-5490939 | None:intergenic | 40.0% | |
GGCAATCTCTTTGTTAAGGT+AGG | - | chr1_3:5490973-5490992 | Msa0099340:CDS | 40.0% | |
!! | CTAAGCTGGCTTGATTCAAT+GGG | + | chr1_3:5491014-5491033 | None:intergenic | 40.0% |
!! | TCTAAGCTGGCTTGATTCAA+TGG | + | chr1_3:5491015-5491034 | None:intergenic | 40.0% |
!! | GAGGTTTTAACATTGGGAAG+AGG | - | chr1_3:5491071-5491090 | Msa0099340:CDS | 40.0% |
TTGAATACTGTTGCCAAGTG+TGG | + | chr1_3:5491168-5491187 | None:intergenic | 40.0% | |
! | TATGTGTCGGTCAAAGTTTG+AGG | + | chr1_3:5491274-5491293 | None:intergenic | 40.0% |
GCACAACATTGTCCTAATCT+TGG | - | chr1_3:5491553-5491572 | Msa0099340:intron | 40.0% | |
CACACCTCCAAAGATATGTT+TGG | + | chr1_3:5491601-5491620 | None:intergenic | 40.0% | |
!! | GTTTCTAGCTTTGTCTGACA+TGG | - | chr1_3:5491674-5491693 | Msa0099340:CDS | 40.0% |
! | TCTAAGACTTCATAGCTGTG+AGG | - | chr1_3:5491741-5491760 | Msa0099340:CDS | 40.0% |
CTAAGACTTCATAGCTGTGA+GGG | - | chr1_3:5491742-5491761 | Msa0099340:CDS | 40.0% | |
TGTCTGAATTCCCGAGTATT+AGG | - | chr1_3:5491850-5491869 | Msa0099340:intron | 40.0% | |
ATGTACTCGTCCTAATACTC+GGG | + | chr1_3:5491863-5491882 | None:intergenic | 40.0% | |
CATGTACTCGTCCTAATACT+CGG | + | chr1_3:5491864-5491883 | None:intergenic | 40.0% | |
! | TTTTGAATGGTTTCCTTGGC+AGG | - | chr1_3:5492118-5492137 | Msa0099340:intron | 40.0% |
TTGAAGTGATATTGATCCGG+TGG | + | chr1_3:5492209-5492228 | None:intergenic | 40.0% | |
ACCACAAAGGTCATCATTGA+GGG | + | chr1_3:5492299-5492318 | None:intergenic | 40.0% | |
AACCACAAAGGTCATCATTG+AGG | + | chr1_3:5492300-5492319 | None:intergenic | 40.0% | |
GAAATTAGCACTGCAAAAGC+AGG | - | chr1_3:5492325-5492344 | Msa0099340:intron | 40.0% | |
!!! | TGTGATGTTTTTAGTGACGG+TGG | - | chr1_3:5492431-5492450 | Msa0099340:intron | 40.0% |
ATCAGTAAGTTATGGCAGTG+TGG | + | chr1_3:5492685-5492704 | None:intergenic | 40.0% | |
CATTTCACCGACAAAATACC+AGG | + | chr1_3:5493007-5493026 | None:intergenic | 40.0% | |
TGTAGAGCTTGACTTCAGTT+CGG | - | chr1_3:5493083-5493102 | Msa0099340:intron | 40.0% | |
! | AATCGAAGTACTCAATAGGG+AGG | + | chr1_3:5493308-5493327 | None:intergenic | 40.0% |
! | TTGTGTCAGGGCTTTGTAAT+TGG | - | chr1_3:5493496-5493515 | Msa0099340:CDS | 40.0% |
! | TGTGTCAGGGCTTTGTAATT+GGG | - | chr1_3:5493497-5493516 | Msa0099340:CDS | 40.0% |
TTACACAAATTTCAGTGGGC+AGG | + | chr1_3:5493659-5493678 | None:intergenic | 40.0% | |
CACAGCCAATAAAAAGCAGT+TGG | + | chr1_3:5493682-5493701 | None:intergenic | 40.0% | |
!! | CCGTTTTTCATCTACTTCTC+AGG | - | chr1_3:5493804-5493823 | Msa0099340:intron | 40.0% |
GTCTTCGGTCTCTCAATTTA+GGG | - | chr1_3:5493830-5493849 | Msa0099340:intron | 40.0% | |
CCATTAACATCGCTTCAATG+CGG | + | chr1_3:5493879-5493898 | None:intergenic | 40.0% | |
!! | ATGGTCTCACTTGAGTTGAA+AGG | - | chr1_3:5493895-5493914 | Msa0099340:intron | 40.0% |
!! | TCACTTGAGTTGAAAGGATG+TGG | - | chr1_3:5493901-5493920 | Msa0099340:intron | 40.0% |
! | GATAAAGCATCACCTGCAAA+AGG | + | chr1_3:5493980-5493999 | None:intergenic | 40.0% |
TAAATTTGGGAGCCAATGCA+GGG | + | chr1_3:5494171-5494190 | None:intergenic | 40.0% | |
!!! | AGATTTGTTTTGAGGATGGG+AGG | + | chr1_3:5494347-5494366 | None:intergenic | 40.0% |
!!! | CCGTAGATTTGTTTTGAGGA+TGG | + | chr1_3:5494351-5494370 | None:intergenic | 40.0% |
CAGGAAAATGGAGATAGAAG+GGG | - | chr1_3:5494602-5494621 | Msa0099340:intron | 40.0% | |
AAAATGGAGATAGAAGGGGA+TGG | - | chr1_3:5494606-5494625 | Msa0099340:intron | 40.0% | |
GAAAAGAGTGAGAGGAAAAG+TGG | - | chr1_3:5494628-5494647 | Msa0099340:intron | 40.0% | |
ATTTCTCGGTCCACAGATTA+TGG | - | chr1_3:5494709-5494728 | Msa0099340:CDS | 40.0% | |
!! | CTTGAAGGTACTAAAGTTGC+AGG | - | chr1_3:5494792-5494811 | Msa0099340:CDS | 40.0% |
TCGCTTGAACCTCTTTACAA+GGG | - | chr1_3:5494838-5494857 | Msa0099340:CDS | 40.0% | |
CAGGAGTTGGATTTGTCTTA+TGG | - | chr1_3:5494880-5494899 | Msa0099340:intron | 40.0% | |
CGTTTAAACTCACACGTGTA+AGG | + | chr1_3:5494954-5494973 | None:intergenic | 40.0% | |
! | GTTTTCGTAGGAAGTTGCAA+TGG | + | chr1_3:5495055-5495074 | None:intergenic | 40.0% |
!! | TGACACATGGTTGTTTTCGT+AGG | + | chr1_3:5495067-5495086 | None:intergenic | 40.0% |
!! | GTTGAGGTTCTGAAGTAATC+GGG | + | chr1_3:5495103-5495122 | None:intergenic | 40.0% |
GGGTTGTCCAAATATTAGGA+AGG | - | chr1_3:5495128-5495147 | Msa0099340:intron | 40.0% | |
TCTGTCAGCTAATTTGAAGG+AGG | - | chr1_3:5495203-5495222 | Msa0099340:intron | 40.0% | |
! | TAGCTTGTCTCAATCTATGC+TGG | - | chr1_3:5495232-5495251 | Msa0099340:CDS | 40.0% |
! | ACCGATCCACATTCTTTTGA+GGG | + | chr1_3:5495280-5495299 | None:intergenic | 40.0% |
! | AACCGATCCACATTCTTTTG+AGG | + | chr1_3:5495281-5495300 | None:intergenic | 40.0% |
AACACAGACACACTCCTATT+TGG | + | chr1_3:5495704-5495723 | None:intergenic | 40.0% | |
! | AAATAGGAGTGTGTCTGTGT+TGG | - | chr1_3:5495703-5495722 | Msa0099340:CDS | 40.0% |
!! | GTGTTTTTGTCCCGATCTTT+TGG | - | chr1_3:5495897-5495916 | Msa0099340:intron | 40.0% |
GATAAACCAGCCAAAAGATC+GGG | + | chr1_3:5495910-5495929 | None:intergenic | 40.0% | |
GGATAAACCAGCCAAAAGAT+CGG | + | chr1_3:5495911-5495930 | None:intergenic | 40.0% | |
GCCCATTCTTAAAAAGCAGA+CGG | + | chr1_3:5495932-5495951 | None:intergenic | 40.0% | |
TATGCATTTGCTCTCACCTT+AGG | + | chr1_3:5496266-5496285 | None:intergenic | 40.0% | |
AAATTTCGTGCAGCATGTTC+TGG | - | chr1_3:5496415-5496434 | Msa0099340:CDS | 40.0% | |
! | TTTTGTGGTGCTTGTTCACT+TGG | - | chr1_3:5496497-5496516 | Msa0099340:CDS | 40.0% |
AGGCACACTTGGCAATAAAT+CGG | - | chr1_3:5496525-5496544 | Msa0099340:exon | 40.0% | |
! | CTTGCATTTTACGATGCATG+CGG | - | chr1_3:5496801-5496820 | Msa0099340:five_prime_UTR | 40.0% |
AGAAAGTGAGGGGAAATGGA+AGG | + | chr1_3:5489263-5489282 | None:intergenic | 45.0% | |
AGAGAGAAAGTGAGGGGAAA+TGG | + | chr1_3:5489267-5489286 | None:intergenic | 45.0% | |
GGTGAATTGGAGAGAGAAAG+GGG | + | chr1_3:5489293-5489312 | None:intergenic | 45.0% | |
GGGTGAATTGGAGAGAGAAA+GGG | + | chr1_3:5489294-5489313 | None:intergenic | 45.0% | |
AGGGTGAATTGGAGAGAGAA+AGG | + | chr1_3:5489295-5489314 | None:intergenic | 45.0% | |
!! | AGGTGTCAACTTGTTGAACC+TGG | - | chr1_3:5489456-5489475 | Msa0099340:CDS | 45.0% |
TCATCAGCAACAGGACTTTC+CGG | + | chr1_3:5489672-5489691 | None:intergenic | 45.0% | |
CACGCTTATGAGACGAATCA+CGG | + | chr1_3:5489698-5489717 | None:intergenic | 45.0% | |
! | CCAATAAGTGGTGTCAGCTA+TGG | + | chr1_3:5489994-5490013 | None:intergenic | 45.0% |
CCATAGCTGACACCACTTAT+TGG | - | chr1_3:5489991-5490010 | Msa0099340:intron | 45.0% | |
! | CCAAGCCTTATCCCAATAAG+TGG | + | chr1_3:5490006-5490025 | None:intergenic | 45.0% |
CCACTTATTGGGATAAGGCT+TGG | - | chr1_3:5490003-5490022 | Msa0099340:intron | 45.0% | |
! | TGGTGAGGATGGTAATGATG+TGG | - | chr1_3:5490336-5490355 | Msa0099340:intron | 45.0% |
TTACAGTCGAGGACATGTGT+AGG | - | chr1_3:5490888-5490907 | Msa0099340:CDS | 45.0% | |
! | GCTACAGCATTGAGCATATC+AGG | - | chr1_3:5490923-5490942 | Msa0099340:CDS | 45.0% |
AAATCAGCTGGAGTCTAAGC+TGG | + | chr1_3:5491028-5491047 | None:intergenic | 45.0% | |
ACATTGGGAAGAGGACAGAT+AGG | - | chr1_3:5491080-5491099 | Msa0099340:CDS | 45.0% | |
CATTGGGAAGAGGACAGATA+GGG | - | chr1_3:5491081-5491100 | Msa0099340:CDS | 45.0% | |
ATTGGGAAGAGGACAGATAG+GGG | - | chr1_3:5491082-5491101 | Msa0099340:CDS | 45.0% | |
CAAGATGACACAGTCTCTCA+TGG | + | chr1_3:5491205-5491224 | None:intergenic | 45.0% | |
GTGTCATGCGAATACAAGTC+AGG | - | chr1_3:5491240-5491259 | Msa0099340:intron | 45.0% | |
GTTACTGCGCTTCAATGACA+TGG | + | chr1_3:5491365-5491384 | None:intergenic | 45.0% | |
GTCATTGAAGCGCAGTAACA+TGG | - | chr1_3:5491366-5491385 | Msa0099340:intron | 45.0% | |
TGTCCAGCTTCACTAGTTGA+GGG | + | chr1_3:5491489-5491508 | None:intergenic | 45.0% | |
ATGTCCAGCTTCACTAGTTG+AGG | + | chr1_3:5491490-5491509 | None:intergenic | 45.0% | |
CTGCCCAAACATATCTTTGG+AGG | - | chr1_3:5491594-5491613 | Msa0099340:intron | 45.0% | |
AGCTCACAGTTCTATGTTGG+AGG | - | chr1_3:5491792-5491811 | Msa0099340:CDS | 45.0% | |
CATGATATCACTGCCAATGC+AGG | - | chr1_3:5491880-5491899 | Msa0099340:intron | 45.0% | |
! | ATCACTGCCAATGCAGGTTT+TGG | - | chr1_3:5491886-5491905 | Msa0099340:intron | 45.0% |
TCAAGCTCCAAAACCTGCAT+TGG | + | chr1_3:5491896-5491915 | None:intergenic | 45.0% | |
!! | TCTATTGACTTCGGTGTCGT+TGG | - | chr1_3:5491925-5491944 | Msa0099340:intron | 45.0% |
TCAAATCTGCTAACCTGCCA+AGG | + | chr1_3:5492134-5492153 | None:intergenic | 45.0% | |
!!! | GATGTTTTTAGTGACGGTGG+AGG | - | chr1_3:5492434-5492453 | Msa0099340:intron | 45.0% |
GTGTGGAAAGGATCAAGAGT+AGG | + | chr1_3:5492615-5492634 | None:intergenic | 45.0% | |
GCTCAAGAGTAGTAACTGCT+CGG | + | chr1_3:5493150-5493169 | None:intergenic | 45.0% | |
TGAGCTAACATGCCCTTATC+TGG | - | chr1_3:5493165-5493184 | Msa0099340:intron | 45.0% | |
AACATGCCCTTATCTGGAGA+AGG | - | chr1_3:5493171-5493190 | Msa0099340:intron | 45.0% | |
CTGGAGAAGGTCATATTGGA+TGG | - | chr1_3:5493184-5493203 | Msa0099340:intron | 45.0% | |
CAAATTTCAGTGGGCAGGTT+GGG | + | chr1_3:5493654-5493673 | None:intergenic | 45.0% | |
ACAAATTTCAGTGGGCAGGT+TGG | + | chr1_3:5493655-5493674 | None:intergenic | 45.0% | |
!! | CTACTTCTCAGGTTGGTCTT+CGG | - | chr1_3:5493815-5493834 | Msa0099340:intron | 45.0% |
GGTCTTCGGTCTCTCAATTT+AGG | - | chr1_3:5493829-5493848 | Msa0099340:intron | 45.0% | |
CCGCATTGAAGCGATGTTAA+TGG | - | chr1_3:5493876-5493895 | Msa0099340:intron | 45.0% | |
!! | CTTGAGTTGAAAGGATGTGG+TGG | - | chr1_3:5493904-5493923 | Msa0099340:intron | 45.0% |
TTGTCCTCTCTTGACATCAC+TGG | - | chr1_3:5493948-5493967 | Msa0099340:CDS | 45.0% | |
! | ACTCAATTAGTGGACAGGCA+CGG | + | chr1_3:5494100-5494119 | None:intergenic | 45.0% |
TTAATGTCCTGCCCATCGAT+TGG | - | chr1_3:5494128-5494147 | Msa0099340:CDS | 45.0% | |
! | TAATGTCCTGCCCATCGATT+GGG | - | chr1_3:5494129-5494148 | Msa0099340:CDS | 45.0% |
GTCCATCTAACCCAATCGAT+GGG | + | chr1_3:5494142-5494161 | None:intergenic | 45.0% | |
AGTCCATCTAACCCAATCGA+TGG | + | chr1_3:5494143-5494162 | None:intergenic | 45.0% | |
CTAAATTTGGGAGCCAATGC+AGG | + | chr1_3:5494172-5494191 | None:intergenic | 45.0% | |
GTCGCTTGAACCTCTTTACA+AGG | - | chr1_3:5494837-5494856 | Msa0099340:CDS | 45.0% | |
CTTGAACCTCTTTACAAGGG+TGG | - | chr1_3:5494841-5494860 | Msa0099340:CDS | 45.0% | |
! | AAAGCACCACCCTTGTAAAG+AGG | + | chr1_3:5494850-5494869 | None:intergenic | 45.0% |
TTTACCAGCTCTTCAGGAGT+TGG | - | chr1_3:5494867-5494886 | Msa0099340:intron | 45.0% | |
AAATCCAACTCCTGAAGAGC+TGG | + | chr1_3:5494874-5494893 | None:intergenic | 45.0% | |
ATGCTTATGCCAGGTAACTC+AGG | + | chr1_3:5495027-5495046 | None:intergenic | 45.0% | |
ATGGATAGGATGCTTATGCC+AGG | + | chr1_3:5495036-5495055 | None:intergenic | 45.0% | |
CGTAGGAAGTTGCAATGGAT+AGG | + | chr1_3:5495050-5495069 | None:intergenic | 45.0% | |
TGGGTTGCTCATTTGACACA+TGG | + | chr1_3:5495080-5495099 | None:intergenic | 45.0% | |
!! | AGGTTCTGAAGTAATCGGGT+GGG | + | chr1_3:5495099-5495118 | None:intergenic | 45.0% |
! | GCGTGGGTTGTCCAAATATT+AGG | - | chr1_3:5495124-5495143 | Msa0099340:intron | 45.0% |
! | CCGATCCACATTCTTTTGAG+GGG | + | chr1_3:5495279-5495298 | None:intergenic | 45.0% |
CCCCTCAAAAGAATGTGGAT+CGG | - | chr1_3:5495276-5495295 | Msa0099340:CDS | 45.0% | |
CTTCAGCAACTGTTCCTCAT+TGG | - | chr1_3:5495339-5495358 | Msa0099340:intron | 45.0% | |
ATTCACGAGTCCTACCACTT+AGG | - | chr1_3:5495598-5495617 | Msa0099340:CDS | 45.0% | |
GAGTCCTACCACTTAGGAAA+TGG | - | chr1_3:5495604-5495623 | Msa0099340:CDS | 45.0% | |
GGAACCATTTCCTAAGTGGT+AGG | + | chr1_3:5495611-5495630 | None:intergenic | 45.0% | |
ACTGGGAACCATTTCCTAAG+TGG | + | chr1_3:5495615-5495634 | None:intergenic | 45.0% | |
! | TTTTGTCCCGATCTTTTGGC+TGG | - | chr1_3:5495901-5495920 | Msa0099340:intron | 45.0% |
TTAGGCGTGCAATATTGACG+AGG | - | chr1_3:5496178-5496197 | Msa0099340:intron | 45.0% | |
TGATGTTCGCTTCTGTCCTA+AGG | - | chr1_3:5496247-5496266 | Msa0099340:CDS | 45.0% | |
CAGATAAGCTCAGCGAGTAT+GGG | - | chr1_3:5496391-5496410 | Msa0099340:CDS | 45.0% | |
TGCTTGTTCACTTGGAGAGA+AGG | - | chr1_3:5496505-5496524 | Msa0099340:CDS | 45.0% | |
GGCACACTTGGCAATAAATC+GGG | - | chr1_3:5496526-5496545 | Msa0099340:exon | 45.0% | |
!!! | ATTTTTTTATTTTATGTTTT+TGG | - | chr1_3:5494493-5494512 | Msa0099340:CDS | 5.0% |
!!! | TTTATTTTTTTTAAATTGTA+AGG | - | chr1_3:5496052-5496071 | Msa0099340:intron | 5.0% |
GATCGGATCTTGGAGGAAGA+TGG | + | chr1_3:5489223-5489242 | None:intergenic | 50.0% | |
TGGATCTGATCGGATCTTGG+AGG | + | chr1_3:5489230-5489249 | None:intergenic | 50.0% | |
GGATGGATCTGATCGGATCT+TGG | + | chr1_3:5489233-5489252 | None:intergenic | 50.0% | |
GGGGAAATGGAAGGTGGAAA+TGG | + | chr1_3:5489254-5489273 | None:intergenic | 50.0% | |
AAGTGAGGGGAAATGGAAGG+TGG | + | chr1_3:5489260-5489279 | None:intergenic | 50.0% | |
GGGTAGAGAGAGAAAGTGAG+GGG | + | chr1_3:5489273-5489292 | None:intergenic | 50.0% | |
GGGGTAGAGAGAGAAAGTGA+GGG | + | chr1_3:5489274-5489293 | None:intergenic | 50.0% | |
AGGGGTAGAGAGAGAAAGTG+AGG | + | chr1_3:5489275-5489294 | None:intergenic | 50.0% | |
! | GTGACGATCCGTCGCATTTT+TGG | + | chr1_3:5489361-5489380 | None:intergenic | 50.0% |
GTCACTCACGCATGAATCTC+TGG | - | chr1_3:5489376-5489395 | Msa0099340:three_prime_UTR | 50.0% | |
TCGTCGTCGTTGTTCATACC+AGG | + | chr1_3:5489477-5489496 | None:intergenic | 50.0% | |
TTGATTCCTGGCCTGCTGTA+CGG | - | chr1_3:5489592-5489611 | Msa0099340:intron | 50.0% | |
ACCGGAATTCGGGATTACAG+CGG | + | chr1_3:5489649-5489668 | None:intergenic | 50.0% | |
TGTAATCCCGAATTCCGGTC+CGG | - | chr1_3:5489650-5489669 | Msa0099340:intron | 50.0% | |
TCACGGTTCTCATCAGCAAC+AGG | + | chr1_3:5489681-5489700 | None:intergenic | 50.0% | |
!! | GATTTTGCGTTGGTGTGTGG+TGG | - | chr1_3:5490316-5490335 | Msa0099340:intron | 50.0% |
GGTAATGATGTGGAAGACGG+TGG | - | chr1_3:5490346-5490365 | Msa0099340:intron | 50.0% | |
AATGATGTGGAAGACGGTGG+AGG | - | chr1_3:5490349-5490368 | Msa0099340:intron | 50.0% | |
ATGATGTGGAAGACGGTGGA+GGG | - | chr1_3:5490350-5490369 | Msa0099340:intron | 50.0% | |
CTGCCAGAGTTTGTAAGCAG+TGG | - | chr1_3:5490611-5490630 | Msa0099340:intron | 50.0% | |
CCAGAGTTTGTAAGCAGTGG+CGG | - | chr1_3:5490614-5490633 | Msa0099340:intron | 50.0% | |
CAGAGTTTGTAAGCAGTGGC+GGG | - | chr1_3:5490615-5490634 | Msa0099340:intron | 50.0% | |
ATGCCCTCAACTAGTGAAGC+TGG | - | chr1_3:5491483-5491502 | Msa0099340:intron | 50.0% | |
CTAACTGCTCTGTACTCCAC+CGG | - | chr1_3:5492190-5492209 | Msa0099340:intron | 50.0% | |
GCCCTCAATGATGACCTTTG+TGG | - | chr1_3:5492295-5492314 | Msa0099340:intron | 50.0% | |
AAGGGAGAGACTGACTAACG+AGG | + | chr1_3:5493119-5493138 | None:intergenic | 50.0% | |
TCGTTAGTCAGTCTCTCCCT+TGG | - | chr1_3:5493118-5493137 | Msa0099340:intron | 50.0% | |
TTAGTCAGTCTCTCCCTTGG+TGG | - | chr1_3:5493121-5493140 | Msa0099340:intron | 50.0% | |
TTCCTAGAGGAGGTTGTGTC+AGG | - | chr1_3:5493483-5493502 | Msa0099340:CDS | 50.0% | |
TCCTAGAGGAGGTTGTGTCA+GGG | - | chr1_3:5493484-5493503 | Msa0099340:CDS | 50.0% | |
! | GGGCTTTGTAATTGGGACCA+CGG | - | chr1_3:5493504-5493523 | Msa0099340:CDS | 50.0% |
GCATCCAGTGATGTCAAGAG+AGG | + | chr1_3:5493955-5493974 | None:intergenic | 50.0% | |
! | CACTGGATGCTTCCTTTTGC+AGG | - | chr1_3:5493965-5493984 | Msa0099340:CDS | 50.0% |
! | CTCAATTAGTGGACAGGCAC+GGG | + | chr1_3:5494099-5494118 | None:intergenic | 50.0% |
ATCTAACCCAATCGATGGGC+AGG | + | chr1_3:5494138-5494157 | None:intergenic | 50.0% | |
! | TGCCCATCGATTGGGTTAGA+TGG | - | chr1_3:5494137-5494156 | Msa0099340:CDS | 50.0% |
ATGGACTCTGTTCCCTGCAT+TGG | - | chr1_3:5494156-5494175 | Msa0099340:CDS | 50.0% | |
!!! | TGTTTTGAGGATGGGAGGAG+CGG | + | chr1_3:5494342-5494361 | None:intergenic | 50.0% |
AGGGGATGGAAAAGAGTGAG+AGG | - | chr1_3:5494620-5494639 | Msa0099340:intron | 50.0% | |
AAGAGGTTCAAGCGACGAGT+CGG | + | chr1_3:5494833-5494852 | None:intergenic | 50.0% | |
TGGTGCTTTACCAGCTCTTC+AGG | - | chr1_3:5494861-5494880 | Msa0099340:intron | 50.0% | |
! | TTAAACTGGGGGCACAGTCA+AGG | - | chr1_3:5494994-5495013 | Msa0099340:CDS | 50.0% |
! | TAAACTGGGGGCACAGTCAA+GGG | - | chr1_3:5494995-5495014 | Msa0099340:CDS | 50.0% |
GGGAAGTTTCCTGAGTTACC+TGG | - | chr1_3:5495015-5495034 | Msa0099340:CDS | 50.0% | |
!! | GAGGTTCTGAAGTAATCGGG+TGG | + | chr1_3:5495100-5495119 | None:intergenic | 50.0% |
ACTTCAGAACCTCAACTGCG+TGG | - | chr1_3:5495107-5495126 | Msa0099340:intron | 50.0% | |
CTTCAGAACCTCAACTGCGT+GGG | - | chr1_3:5495108-5495127 | Msa0099340:intron | 50.0% | |
! | TGGGAACAGTGTGCTGTTGA+TGG | + | chr1_3:5495162-5495181 | None:intergenic | 50.0% |
GTTCGCCCCTCAAAAGAATG+TGG | - | chr1_3:5495271-5495290 | Msa0099340:CDS | 50.0% | |
GCAGATAAGCTCAGCGAGTA+TGG | - | chr1_3:5496390-5496409 | Msa0099340:CDS | 50.0% | |
! | ACTTGGAGAGAAGGCACACT+TGG | - | chr1_3:5496514-5496533 | Msa0099340:CDS | 50.0% |
GCCGCTGTAATCCCGAATTC+CGG | - | chr1_3:5489645-5489664 | Msa0099340:intron | 55.0% | |
GACTTTCCGGACCGGAATTC+GGG | + | chr1_3:5489659-5489678 | None:intergenic | 55.0% | |
GGACTTTCCGGACCGGAATT+CGG | + | chr1_3:5489660-5489679 | None:intergenic | 55.0% | |
AGCAACAGGACTTTCCGGAC+CGG | + | chr1_3:5489667-5489686 | None:intergenic | 55.0% | |
!! | GGCGATTTTGCGTTGGTGTG+TGG | - | chr1_3:5490313-5490332 | Msa0099340:intron | 55.0% |
! | TTGGTGTGTGGTGGTGAGGA+TGG | - | chr1_3:5490325-5490344 | Msa0099340:intron | 55.0% |
CCGCCACTGCTTACAAACTC+TGG | + | chr1_3:5490617-5490636 | None:intergenic | 55.0% | |
GCTGCACGAATAGCAGCATC+AGG | + | chr1_3:5491454-5491473 | None:intergenic | 55.0% | |
GGGCATCACTTCTGCGTCAA+TGG | - | chr1_3:5491762-5491781 | Msa0099340:CDS | 55.0% | |
AACTGCTCGGCAACCACCAA+GGG | + | chr1_3:5493137-5493156 | None:intergenic | 55.0% | |
TAACTGCTCGGCAACCACCA+AGG | + | chr1_3:5493138-5493157 | None:intergenic | 55.0% | |
AAACAGGCTGCAGAGTCACC+AGG | + | chr1_3:5494220-5494239 | None:intergenic | 55.0% | |
TTGGACAACCCACGCAGTTG+AGG | + | chr1_3:5495119-5495138 | None:intergenic | 55.0% | |
GGCGTGCAATATTGACGAGG+AGG | - | chr1_3:5496181-5496200 | Msa0099340:intron | 55.0% | |
! | TGCGTTGGTGTGTGGTGGTG+AGG | - | chr1_3:5490321-5490340 | Msa0099340:intron | 60.0% |
GCCCTGACACAACCTCCTCT+AGG | + | chr1_3:5493488-5493507 | None:intergenic | 60.0% | |
CCTGCTGTACGGCGCTCGAT+CGG | - | chr1_3:5489603-5489622 | Msa0099340:intron | 65.0% | |
! | CCGATCGAGCGCCGTACAGC+AGG | + | chr1_3:5489606-5489625 | None:intergenic | 70.0% |
! | CGAGCGCCGTACAGCAGGCC+AGG | + | chr1_3:5489601-5489620 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 5489068 | 5496861 | 5489068 | ID=Msa0099340;Name=Msa0099340 |
chr1_3 | mRNA | 5489068 | 5496861 | 5489068 | ID=Msa0099340-mRNA-1;Parent=Msa0099340;Name=Msa0099340-mRNA-1;_AED=0.26;_eAED=0.26;_QI=319|1|1|1|1|1|17|381|986 |
chr1_3 | exon | 5489068 | 5489535 | 5489068 | ID=Msa0099340-mRNA-1:exon:2110;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5489661 | 5489747 | 5489661 | ID=Msa0099340-mRNA-1:exon:2109;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5490521 | 5490584 | 5490521 | ID=Msa0099340-mRNA-1:exon:2108;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5490664 | 5491130 | 5490664 | ID=Msa0099340-mRNA-1:exon:2107;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5491667 | 5491865 | 5491667 | ID=Msa0099340-mRNA-1:exon:2106;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5491943 | 5492103 | 5491943 | ID=Msa0099340-mRNA-1:exon:2105;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5492689 | 5492841 | 5492689 | ID=Msa0099340-mRNA-1:exon:2104;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5493433 | 5493603 | 5493433 | ID=Msa0099340-mRNA-1:exon:2103;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5493690 | 5493789 | 5493690 | ID=Msa0099340-mRNA-1:exon:2102;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5493939 | 5494027 | 5493939 | ID=Msa0099340-mRNA-1:exon:2101;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5494116 | 5494214 | 5494116 | ID=Msa0099340-mRNA-1:exon:2100;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5494314 | 5494584 | 5494314 | ID=Msa0099340-mRNA-1:exon:2099;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5494668 | 5494865 | 5494668 | ID=Msa0099340-mRNA-1:exon:2098;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5494939 | 5495035 | 5494939 | ID=Msa0099340-mRNA-1:exon:2097;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5495223 | 5495355 | 5495223 | ID=Msa0099340-mRNA-1:exon:2096;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5495482 | 5495722 | 5495482 | ID=Msa0099340-mRNA-1:exon:2095;Parent=Msa0099340-mRNA-1 |
chr1_3 | exon | 5496199 | 5496861 | 5496199 | ID=Msa0099340-mRNA-1:exon:2094;Parent=Msa0099340-mRNA-1 |
chr1_3 | five_prime_UTR | 5496543 | 5496861 | 5496543 | ID=Msa0099340-mRNA-1:five_prime_utr;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5496199 | 5496542 | 5496199 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5495482 | 5495722 | 5495482 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5495223 | 5495355 | 5495223 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5494939 | 5495035 | 5494939 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5494668 | 5494865 | 5494668 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5494314 | 5494584 | 5494314 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5494116 | 5494214 | 5494116 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5493939 | 5494027 | 5493939 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5493690 | 5493789 | 5493690 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5493433 | 5493603 | 5493433 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5492689 | 5492841 | 5492689 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5491943 | 5492103 | 5491943 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5491667 | 5491865 | 5491667 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5490664 | 5491130 | 5490664 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5490521 | 5490584 | 5490521 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5489661 | 5489747 | 5489661 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | CDS | 5489449 | 5489535 | 5489449 | ID=Msa0099340-mRNA-1:cds;Parent=Msa0099340-mRNA-1 |
chr1_3 | three_prime_UTR | 5489068 | 5489448 | 5489068 | ID=Msa0099340-mRNA-1:three_prime_utr;Parent=Msa0099340-mRNA-1 |
Gene Sequence |
Protein sequence |