Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101290 | G7KW71 | 55.111 | 450 | 152 | 7 | 150 | 568 | 72 | 502 | 3.02e-131 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051000 | Msa0101290 | 0.918204 | 2.079641e-86 | -8.615850e-47 |
| Msa0101290 | Msa0490350 | 0.818385 | 2.015440e-52 | -8.615850e-47 |
| Msa0101290 | Msa0508200 | 0.823342 | 1.458570e-53 | -8.615850e-47 |
| Msa0101290 | Msa0535060 | 0.802745 | 4.848405e-49 | -8.615850e-47 |
| Msa0101290 | Msa0669850 | 0.811790 | 5.868746e-51 | -8.615850e-47 |
| Msa0101290 | Msa1280130 | 0.805033 | 1.623097e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101290 | MtrunA17_Chr7g0251741 | 81.955 | 133 | 24 | 0 | 193 | 325 | 3 | 135 | 6.83e-68 | 221 |
| Msa0101290 | MtrunA17_Chr7g0251731 | 49.405 | 168 | 83 | 1 | 403 | 568 | 1 | 168 | 6.40e-37 | 138 |
| Msa0101290 | MtrunA17_Chr4g0048401 | 34.188 | 234 | 90 | 2 | 251 | 420 | 216 | 449 | 5.38e-24 | 107 |
| Msa0101290 | MtrunA17_Chr8g0342231 | 58.929 | 56 | 18 | 1 | 35 | 85 | 14 | 69 | 2.22e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101290 | AT1G61350.1 | 30.337 | 267 | 140 | 9 | 214 | 458 | 169 | 411 | 3.06e-16 | 83.6 |
Find 176 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACAGATGTATTGAATTTA+AGG | 0.078286 | 1_3:+7870707 | Msa0101290:CDS |
| GACCAATGCCAAATGAAATT+TGG | 0.179766 | 1_3:-7870023 | Msa0101280:intron |
| TGGCATCAGGTTTGACAAAA+TGG | 0.190365 | 1_3:+7871253 | Msa0101290:CDS |
| TTGCAACAGCTCAAGAATTT+TGG | 0.193883 | 1_3:-7869390 | Msa0101280:intron |
| GGTTGGTTTGGAAGAGATTT+TGG | 0.195951 | 1_3:+7872802 | Msa0101290:CDS |
| TGGGCATTAAAGAAGAAAAT+TGG | 0.232432 | 1_3:-7871294 | Msa0101280:intron |
| GCAAGTCAATCTTTCAATTC+TGG | 0.234907 | 1_3:+7870784 | Msa0101290:CDS |
| TACAGTGAGAGAATGGAATT+TGG | 0.236598 | 1_3:+7872739 | Msa0101290:CDS |
| GGATTAATGAGGCGTTTAAT+TGG | 0.237939 | 1_3:+7871010 | Msa0101290:CDS |
| ACGCTTCGATCTGGCGGTTT+TGG | 0.250033 | 1_3:-7869725 | Msa0101280:intron |
| ATCATTCCCTGTTGCATCTA+TGG | 0.251649 | 1_3:-7871163 | Msa0101280:intron |
| CCACTATACTCTGTTATAAT+TGG | 0.251722 | 1_3:+7870511 | Msa0101290:CDS |
| CTGTGGTAGTGGTGTTATTT+TGG | 0.251741 | 1_3:+7871214 | Msa0101290:CDS |
| TTTGATACATTGATATCTTA+TGG | 0.257979 | 1_3:-7870597 | Msa0101280:intron |
| GCGAGAGAGGGAGAAGGTTC+TGG | 0.263181 | 1_3:+7872766 | Msa0101290:CDS |
| TAAGGTTTATCATTGTTATT+AGG | 0.276779 | 1_3:+7870725 | Msa0101290:CDS |
| AACTTATGTCTTGGAATTCA+TGG | 0.283716 | 1_3:+7870646 | Msa0101290:CDS |
| AGAGGTGAATGAAGAAAATA+AGG | 0.285761 | 1_3:-7870872 | Msa0101280:intron |
| CATATTGTGCATTCATAATA+TGG | 0.289487 | 1_3:+7870447 | Msa0101290:CDS |
| CCACCAATGTTTGTAACTTT+AGG | 0.293662 | 1_3:-7871569 | Msa0101280:intron |
| ATTGTTGGTGGCTATGTTAA+TGG | 0.302020 | 1_3:+7871333 | Msa0101290:CDS |
| AGAAAATAAGGCAATTAAAA+TGG | 0.308231 | 1_3:-7870860 | Msa0101280:intron |
| GAGAGAGAGAGTGGTTGGTT+TGG | 0.310741 | 1_3:+7872790 | Msa0101290:CDS |
| CCTTCAATTGATTTCAATGC+TGG | 0.333526 | 1_3:+7869551 | Msa0101290:CDS |
| TTCTTCCACTAACTGAATCT+TGG | 0.337216 | 1_3:-7870908 | Msa0101280:intron |
| CTTGAGAAGTACCACTAGTT+TGG | 0.339104 | 1_3:+7871533 | Msa0101290:CDS |
| GTAACAGAATGTTCCTCTAT+TGG | 0.345499 | 1_3:-7869482 | Msa0101280:intron |
| AATGGCCACCTCATGGAGTT+TGG | 0.346533 | 1_3:-7870842 | Msa0101280:intron |
| TATGGCTCTAAGAACTTGTT+AGG | 0.350553 | 1_3:+7871492 | Msa0101290:CDS |
| ATCAAACAGTGACGCAGTTC+AGG | 0.355464 | 1_3:+7870417 | Msa0101290:CDS |
| TTACTAAAGAGACTAGAATA+TGG | 0.365619 | 1_3:-7871411 | Msa0101280:intron |
| TGAGATTTCCAAATTTCATT+TGG | 0.365637 | 1_3:+7870015 | Msa0101290:CDS |
| ATACAACATAGAAATGAAAT+AGG | 0.366199 | 1_3:-7871456 | Msa0101280:intron |
| AAGAATTATTGTTGGTGGTA+AGG | 0.367309 | 1_3:+7870336 | Msa0101290:CDS |
| CTGGGGAGAGAGAGAGTGGT+TGG | 0.367992 | 1_3:+7872785 | Msa0101290:CDS |
| TGTACCCAAGATTCAGTTAG+TGG | 0.369913 | 1_3:+7870903 | Msa0101290:CDS |
| TCTATGATATTTGCACTTGT+GGG | 0.374132 | 1_3:+7870943 | Msa0101290:CDS |
| CAGTTTGTCCACTACCTGTT+TGG | 0.374237 | 1_3:+7869876 | Msa0101290:CDS |
| GTGCATACAATGGTAGAATA+TGG | 0.379518 | 1_3:+7871033 | Msa0101290:CDS |
| GGTGGAGGCATGCTGCATTC+CGG | 0.381132 | 1_3:-7869698 | Msa0101280:intron |
| GGGAATTATGAACTTGTTCA+TGG | 0.385029 | 1_3:+7871110 | Msa0101290:CDS |
| CAAACAATAAAACGAAAGTA+TGG | 0.388701 | 1_3:-7869846 | Msa0101280:intron |
| CTACGAATTTAGCTTATGCT+TGG | 0.391853 | 1_3:+7870260 | Msa0101290:CDS |
| GGAAGATGTGAGAGATGATA+AGG | 0.391926 | 1_3:+7872847 | Msa0101290:CDS |
| ATGGTTATGTTGAAGTGAAT+TGG | 0.392524 | 1_3:+7871352 | Msa0101290:CDS |
| TGTACAAGTATTACAGTGTA+TGG | 0.393461 | 1_3:+7870072 | Msa0101290:CDS |
| TGTATTGCAAAGAATGCTTA+TGG | 0.394302 | 1_3:+7871474 | Msa0101290:CDS |
| TATCATTTAACATTATTGTA+AGG | 0.397773 | 1_3:-7869985 | Msa0101280:intron |
| ATGACTCATCTATTGATGTC+AGG | 0.401827 | 1_3:+7871609 | Msa0101290:CDS |
| CGAGAGAGGGAGAAGGTTCT+GGG | 0.402856 | 1_3:+7872767 | Msa0101290:CDS |
| ACAGTGAGAGAATGGAATTT+GGG | 0.409706 | 1_3:+7872740 | Msa0101290:CDS |
| GAATATGGAACTCCATCTAT+TGG | 0.411971 | 1_3:-7871396 | Msa0101280:intron |
| CTGAGTAATGCACCAATAGA+TGG | 0.412702 | 1_3:+7871384 | Msa0101290:CDS |
| GGAATTCATGGTAACTTTGG+TGG | 0.415303 | 1_3:+7870658 | Msa0101290:CDS |
| CATCTATTGGTGCATTACTC+AGG | 0.427444 | 1_3:-7871383 | Msa0101280:intron |
| TCTATTCTCAACTTATGTCT+TGG | 0.428226 | 1_3:+7870637 | Msa0101290:CDS |
| GATTAATGAGGCGTTTAATT+GGG | 0.428964 | 1_3:+7871011 | Msa0101290:CDS |
| AAGGAAATACACGGTGTAAT+GGG | 0.429871 | 1_3:+7870355 | Msa0101290:CDS |
| CACTGCTCTGGAATTGTCAT+CGG | 0.430664 | 1_3:-7869819 | Msa0101280:intron |
| CACAAGTCCATAGATGCAAC+AGG | 0.432187 | 1_3:+7871156 | Msa0101290:CDS |
| TCTTCCACTAACTGAATCTT+GGG | 0.434862 | 1_3:-7870907 | Msa0101280:intron |
| CTGGGAAAATGCCTAGCCTA+TGG | 0.436133 | 1_3:+7870988 | Msa0101290:CDS |
| TCATCGGGTGGGTGTGGTGG+TGG | 0.436905 | 1_3:-7869803 | Msa0101280:intron |
| TACGAATTTAGCTTATGCTT+GGG | 0.438861 | 1_3:+7870261 | Msa0101290:CDS |
| ATCTATGATATTTGCACTTG+TGG | 0.439471 | 1_3:+7870942 | Msa0101290:CDS |
| TTCAATGTGTTAGCTATGAA+TGG | 0.440360 | 1_3:+7872884 | Msa0101290:CDS |
| GGAATTTGGGAGAGCGAGAG+AGG | 0.451858 | 1_3:+7872753 | Msa0101290:CDS |
| CTTGGAATTCATGGTAACTT+TGG | 0.453762 | 1_3:+7870655 | Msa0101290:CDS |
| GAACGAAGAAGATAGAGAAA+GGG | 0.455707 | 1_3:+7872916 | Msa0101290:CDS |
| TTCCAAATTTCATTTGGCAT+TGG | 0.455939 | 1_3:+7870021 | Msa0101290:CDS |
| TATATCAAAACCAGAATTTG+TGG | 0.456826 | 1_3:-7870187 | Msa0101280:intron |
| TTGCAGTTACAGTGAGAGAA+TGG | 0.456873 | 1_3:+7872732 | Msa0101290:CDS |
| CCCACCTTGCTGAGTAATTG+TGG | 0.457219 | 1_3:+7870307 | Msa0101290:CDS |
| TTGGATGAGACTACGGCAAA+TGG | 0.457891 | 1_3:+7871233 | Msa0101290:CDS |
| AAGTATGGAGTCCACTGCTC+TGG | 0.458536 | 1_3:-7869831 | Msa0101280:intron |
| TGCTATAAAGGGGATTTAGT+TGG | 0.459651 | 1_3:+7870148 | Msa0101290:CDS |
| TGAACGAAGAAGATAGAGAA+AGG | 0.460529 | 1_3:+7872915 | Msa0101290:CDS |
| CATCTATTGATGTCAGGGTT+AGG | 0.461472 | 1_3:+7871615 | Msa0101290:CDS |
| ATGAAATAGGTGGACTGTGC+AGG | 0.463949 | 1_3:-7871443 | Msa0101280:intron |
| GGAAGAAGAAAATGCTAAAG+TGG | 0.465041 | 1_3:+7870102 | Msa0101290:CDS |
| TATGTTGAAGTGAATTGGTT+TGG | 0.465220 | 1_3:+7871357 | Msa0101290:CDS |
| TAAGGAAATACACGGTGTAA+TGG | 0.467119 | 1_3:+7870354 | Msa0101290:CDS |
| ACCACAGCTTTAGTGAGACT+TGG | 0.468018 | 1_3:-7871198 | Msa0101280:intron |
| GGTTCTGGGGAGAGAGAGAG+TGG | 0.468084 | 1_3:+7872781 | Msa0101290:CDS |
| CCACCTTGCTGAGTAATTGT+GGG | 0.468172 | 1_3:+7870308 | Msa0101290:CDS |
| TCAGGTTTGACAAAATGGTT+TGG | 0.469024 | 1_3:+7871258 | Msa0101290:CDS |
| GTTTCAAATCAATGACTCCT+TGG | 0.472171 | 1_3:+7869922 | Msa0101290:CDS |
| GGGGTGTTAAGAATTATTGT+TGG | 0.476867 | 1_3:+7870328 | Msa0101290:CDS |
| AGACTACGGCAAATGGCATC+AGG | 0.479038 | 1_3:+7871240 | Msa0101290:CDS |
| TCTTCACCTGGGATGATTCA+CGG | 0.483433 | 1_3:-7869505 | Msa0101280:intron |
| TTTGGTGGTCTCTCTTGTCA+TGG | 0.485214 | 1_3:+7870673 | Msa0101290:CDS |
| AGACGAAGTTGTTGCGTCCG+TGG | 0.492426 | 1_3:+7869457 | Msa0101290:CDS |
| TTCTGGTGACTCAAGGCTGA+TGG | 0.493252 | 1_3:+7870801 | Msa0101290:CDS |
| TGGAATGATCGCAGCGGCGC+CGG | 0.495480 | 1_3:+7869679 | Msa0101290:CDS |
| TGACTCAAGGCTGATGGGAG+TGG | 0.495694 | 1_3:+7870807 | Msa0101290:CDS |
| CTTCACCTGGGATGATTCAC+GGG | 0.496878 | 1_3:-7869504 | Msa0101280:intron |
| CAATTAAAATGGCCACCTCA+TGG | 0.499278 | 1_3:-7870849 | Msa0101280:intron |
| GGAGAAGGAGAGTGAAGAGA+GGG | 0.500055 | 1_3:+7872826 | Msa0101290:CDS |
| AGATGTTTCAATTCAAGAGT+TGG | 0.501769 | 1_3:+7870534 | Msa0101290:CDS |
| CTTTCAATTCTGGTGACTCA+AGG | 0.506077 | 1_3:+7870794 | Msa0101290:CDS |
| GAATTGTCATCGGGTGGGTG+TGG | 0.506805 | 1_3:-7869809 | Msa0101280:intron |
| CCAGCATTGAAATCAATTGA+AGG | 0.506848 | 1_3:-7869551 | Msa0101280:intron |
| TGTAATGGGTGAGGAAGGTC+TGG | 0.508914 | 1_3:+7870369 | Msa0101290:CDS |
| TGACTCATCTATTGATGTCA+GGG | 0.509797 | 1_3:+7871610 | Msa0101290:CDS |
| CCTAAAGTTACAAACATTGG+TGG | 0.510882 | 1_3:+7871569 | Msa0101290:CDS |
| CTGTTGCATCTATGGACTTG+TGG | 0.511030 | 1_3:-7871155 | Msa0101280:intron |
| TTGTCATCGGGTGGGTGTGG+TGG | 0.511645 | 1_3:-7869806 | Msa0101280:intron |
| ATTTCATTTGGCATTGGTCA+AGG | 0.515961 | 1_3:+7870027 | Msa0101290:CDS |
| TGACGATTAAATTCTTCACC+TGG | 0.516428 | 1_3:-7869517 | Msa0101280:intron |
| CCACAGCTTTAGTGAGACTT+GGG | 0.518270 | 1_3:-7871197 | Msa0101280:intron |
| ACTGCTCTGGAATTGTCATC+GGG | 0.519812 | 1_3:-7869818 | Msa0101280:intron |
| AACGAAGAAGATAGAGAAAG+GGG | 0.520760 | 1_3:+7872917 | Msa0101290:CDS |
| AAGACATAAGTTGAGAATAG+AGG | 0.520980 | 1_3:-7870635 | Msa0101280:intron |
| TCTCACTAAAGCTGTGGTAG+TGG | 0.521675 | 1_3:+7871203 | Msa0101290:CDS |
| CTCTGGAATTGTCATCGGGT+GGG | 0.522293 | 1_3:-7869814 | Msa0101280:intron |
| TTCATAATTCCCTTATCAGA+AGG | 0.524538 | 1_3:-7871099 | Msa0101280:intron |
| TCTGGTGACTCAAGGCTGAT+GGG | 0.538812 | 1_3:+7870802 | Msa0101290:CDS |
| GAATTTGGGAGAGCGAGAGA+GGG | 0.540387 | 1_3:+7872754 | Msa0101290:CDS |
| AGGAGAAGGAGAGTGAAGAG+AGG | 0.540862 | 1_3:+7872825 | Msa0101290:CDS |
| TGGGAAAATGCCTAGCCTAT+GGG | 0.541655 | 1_3:+7870989 | Msa0101290:CDS |
| CGGAAGTGCTTCGCTCGCCT+CGG | 0.542712 | 1_3:-7869429 | Msa0101280:intron |
| CCAATTATAACAGAGTATAG+TGG | 0.551052 | 1_3:-7870511 | Msa0101280:intron |
| CGACGAAATTTCATTCGAAG+TGG | 0.551347 | 1_3:+7869762 | Msa0101290:CDS |
| ACTTGACGCGGATACGAAGA+AGG | 0.551772 | 1_3:+7869586 | Msa0101290:CDS |
| GGGAGAGCGAGAGAGGGAGA+AGG | 0.555061 | 1_3:+7872760 | Msa0101290:CDS |
| GTGTTAAGAATTATTGTTGG+TGG | 0.555626 | 1_3:+7870331 | Msa0101290:CDS |
| GTGTGGTGGTGGTCGAAGCA+TGG | 0.557644 | 1_3:-7869792 | Msa0101280:intron |
| GCTCTGGAATTGTCATCGGG+TGG | 0.558602 | 1_3:-7869815 | Msa0101280:intron |
| TGCGTCCGTGGAACCAATAG+AGG | 0.559714 | 1_3:+7869469 | Msa0101290:CDS |
| AATTCTTGAGCTGTTGCAAG+AGG | 0.563669 | 1_3:+7869394 | Msa0101290:CDS |
| GTACAAGTATTACAGTGTAT+GGG | 0.564577 | 1_3:+7870073 | Msa0101290:CDS |
| CAAATTCTCTGAAACATCAA+AGG | 0.569987 | 1_3:+7870573 | Msa0101290:CDS |
| AGATCGAAGCGTTCAAAAGA+CGG | 0.570905 | 1_3:+7869736 | Msa0101290:CDS |
| GTTTAATTGGGTGCATACAA+TGG | 0.570997 | 1_3:+7871023 | Msa0101290:CDS |
| ACTAGTTTGGTTCATGAGAG+TGG | 0.572202 | 1_3:+7871546 | Msa0101290:CDS |
| ATGTTCCTCTATTGGTTCCA+CGG | 0.572221 | 1_3:-7869474 | Msa0101280:intron |
| AAACGCCTCATTAATCCCAT+AGG | 0.573849 | 1_3:-7871004 | Msa0101280:intron |
| GTCTCTAGAACTATTCTCAA+AGG | 0.576204 | 1_3:+7870469 | Msa0101290:CDS |
| ATCTATTGGTGCATTACTCA+GGG | 0.577979 | 1_3:-7871382 | Msa0101280:intron |
| GAAATCAAACAAGGATGCCA+AGG | 0.578187 | 1_3:-7869939 | Msa0101280:intron |
| GCAACAACTTCGTCTGAAGT+CGG | 0.588264 | 1_3:-7869449 | Msa0101280:intron |
| CCTCATTAATCCCATAGGCT+AGG | 0.588969 | 1_3:-7870999 | Msa0101280:intron |
| CACGGTGTAATGGGTGAGGA+AGG | 0.589977 | 1_3:+7870364 | Msa0101290:CDS |
| ATGTGTTAGCTATGAATGGA+TGG | 0.594370 | 1_3:+7872888 | Msa0101290:CDS |
| CTATGATATTTGCACTTGTG+GGG | 0.598603 | 1_3:+7870944 | Msa0101290:CDS |
| TGGCCTAAAGTTACAAACAT+TGG | 0.600583 | 1_3:+7871566 | Msa0101290:CDS |
| CAAGGCTGATGGGAGTGGAA+TGG | 0.604686 | 1_3:+7870812 | Msa0101290:CDS |
| TGTTACCCGTGAATCATCCC+AGG | 0.608668 | 1_3:+7869499 | Msa0101290:CDS |
| AGCTAACACATTGAAAACAA+TGG | 0.610537 | 1_3:-7872876 | None:intergenic |
| CGATGACAATTCCAGAGCAG+TGG | 0.610651 | 1_3:+7869820 | Msa0101290:CDS |
| AATACACGGTGTAATGGGTG+AGG | 0.610938 | 1_3:+7870360 | Msa0101290:CDS |
| CACCCCACAATTACTCAGCA+AGG | 0.612129 | 1_3:-7870311 | Msa0101280:intron |
| CTCTTCTGAAAACCACACTC+TGG | 0.613516 | 1_3:-7869653 | Msa0101280:intron |
| CACCTTGCTGAGTAATTGTG+GGG | 0.618356 | 1_3:+7870309 | Msa0101290:CDS |
| GACGATTAAATTCTTCACCT+GGG | 0.619100 | 1_3:-7869516 | Msa0101280:intron |
| CCCAAGTCTCACTAAAGCTG+TGG | 0.620324 | 1_3:+7871197 | Msa0101290:CDS |
| GAGAGAGGGAGAAGGTTCTG+GGG | 0.622430 | 1_3:+7872768 | Msa0101290:CDS |
| CCTAGCCTATGGGATTAATG+AGG | 0.622827 | 1_3:+7870999 | Msa0101290:CDS |
| GAGTGCCAAACTCCATGAGG+TGG | 0.624183 | 1_3:+7870837 | Msa0101290:CDS |
| CCACAATTACTCAGCAAGGT+GGG | 0.624557 | 1_3:-7870307 | Msa0101280:intron |
| CTAAGAACTTGTTAGGTGTG+AGG | 0.631153 | 1_3:+7871499 | Msa0101290:CDS |
| CAACATAGAAATGAAATAGG+TGG | 0.632412 | 1_3:-7871453 | Msa0101280:intron |
| AACTACAAATCTACTTGACG+CGG | 0.639003 | 1_3:+7869574 | Msa0101290:CDS |
| CCCACAATTACTCAGCAAGG+TGG | 0.646536 | 1_3:-7870308 | Msa0101280:intron |
| CTTGGGTACAGAAATAGAAG+AGG | 0.648326 | 1_3:-7870890 | Msa0101280:intron |
| AGAGGAGATAGACGCTACCG+AGG | 0.669824 | 1_3:+7869412 | Msa0101290:CDS |
| AACATCGCAACACCAGAGTG+TGG | 0.677579 | 1_3:+7869641 | Msa0101290:CDS |
| GCATTGAAATCAATTGAAGG+AGG | 0.678078 | 1_3:-7869548 | Msa0101280:intron |
| GGAACATATCAAGACACCAA+AGG | 0.678803 | 1_3:+7871636 | Msa0101290:CDS |
| AGGACGAAGGAAATCAAACA+AGG | 0.679398 | 1_3:-7869948 | Msa0101280:intron |
| ACTCTCATGAACCAAACTAG+TGG | 0.692281 | 1_3:-7871544 | Msa0101280:intron |
| GTGGTGGTCGAAGCATGGTG+AGG | 0.708190 | 1_3:-7869787 | Msa0101280:intron |
| ACAAGTCCATAGATGCAACA+GGG | 0.713602 | 1_3:+7871157 | Msa0101290:CDS |
| GAGCATTGGAATGATCGCAG+CGG | 0.720176 | 1_3:+7869673 | Msa0101290:CDS |
| GTTGGTGGTAAGGAAATACA+CGG | 0.721306 | 1_3:+7870346 | Msa0101290:CDS |
| GCTGAGTGCCAAACTCCATG+AGG | 0.769923 | 1_3:+7870834 | Msa0101290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCATTTAACATTATTGTA+AGG | - | chr1_3:7869988-7870007 | Msa0101280:intron | 15.0% |
| !!! | AAATTCTGGTTTTGATATAT+GGG | + | chr1_3:7870191-7870210 | Msa0101290:CDS | 20.0% |
| !! | TTTGATACATTGATATCTTA+TGG | - | chr1_3:7870600-7870619 | Msa0101280:intron | 20.0% |
| !! | TAACAGATGTATTGAATTTA+AGG | + | chr1_3:7870707-7870726 | Msa0101290:CDS | 20.0% |
| !!! | TAAGGTTTATCATTGTTATT+AGG | + | chr1_3:7870725-7870744 | Msa0101290:CDS | 20.0% |
| !! | AGAAAATAAGGCAATTAAAA+TGG | - | chr1_3:7870863-7870882 | Msa0101280:intron | 20.0% |
| !! | AAGGAAAATCAAGAAAAATA+TGG | - | chr1_3:7871083-7871102 | Msa0101280:intron | 20.0% |
| !! | AATAAAAACAACACATGTTT+GGG | - | chr1_3:7871316-7871335 | Msa0101280:intron | 20.0% |
| !! | ATACAACATAGAAATGAAAT+AGG | - | chr1_3:7871459-7871478 | Msa0101280:intron | 20.0% |
| !! | TTCTCTTAATCTTCTATAAA+AGG | + | chr1_3:7871995-7872014 | Msa0101290:intron | 20.0% |
| !! | TCTCTTAATCTTCTATAAAA+GGG | + | chr1_3:7871996-7872015 | Msa0101290:intron | 20.0% |
| !! | AGAAAATTATAATGTGGTAT+TGG | - | chr1_3:7872432-7872451 | Msa0101280:intron | 20.0% |
| !! | ACGTTAAGAAAATTATAATG+TGG | - | chr1_3:7872438-7872457 | Msa0101280:intron | 20.0% |
| ! | CAAACAATAAAACGAAAGTA+TGG | - | chr1_3:7869849-7869868 | Msa0101280:intron | 25.0% |
| !!! | CATACTTTCGTTTTATTGTT+TGG | + | chr1_3:7869847-7869866 | Msa0101290:CDS | 25.0% |
| ! | TGAGATTTCCAAATTTCATT+TGG | + | chr1_3:7870015-7870034 | Msa0101290:CDS | 25.0% |
| !!! | TCAATTTTTGACTGCTATAA+AGG | + | chr1_3:7870136-7870155 | Msa0101290:CDS | 25.0% |
| !!! | CAATTTTTGACTGCTATAAA+GGG | + | chr1_3:7870137-7870156 | Msa0101290:CDS | 25.0% |
| !!! | AATTTTTGACTGCTATAAAG+GGG | + | chr1_3:7870138-7870157 | Msa0101290:CDS | 25.0% |
| ! | TATATCAAAACCAGAATTTG+TGG | - | chr1_3:7870190-7870209 | Msa0101280:intron | 25.0% |
| !!! | CAAATTCTGGTTTTGATATA+TGG | + | chr1_3:7870190-7870209 | Msa0101290:CDS | 25.0% |
| ! | CATATTGTGCATTCATAATA+TGG | + | chr1_3:7870447-7870466 | Msa0101290:CDS | 25.0% |
| ! | CAATAAAAACAACACATGTT+TGG | - | chr1_3:7871317-7871336 | Msa0101280:intron | 25.0% |
| !!! | ACATGTGTTGTTTTTATTGT+TGG | + | chr1_3:7871318-7871337 | Msa0101290:CDS | 25.0% |
| ! | TTACTAAAGAGACTAGAATA+TGG | - | chr1_3:7871414-7871433 | Msa0101280:intron | 25.0% |
| !!! | GCTATTTTTTCCATATCAAA+AGG | + | chr1_3:7871727-7871746 | Msa0101290:intron | 25.0% |
| ! | ATTAAAGTGGAATCAACAAT+TGG | + | chr1_3:7871909-7871928 | Msa0101290:intron | 25.0% |
| ! | TAGAATTATCCCTTAATTGT+TGG | - | chr1_3:7871964-7871983 | Msa0101280:intron | 25.0% |
| ! | TCTTAGTACATAAAGGATAA+AGG | - | chr1_3:7872120-7872139 | Msa0101280:intron | 25.0% |
| ! | TTGATGTTCTTAGTACATAA+AGG | - | chr1_3:7872127-7872146 | Msa0101280:intron | 25.0% |
| !!! | GTTGAGTTGAGTTTTTTTTA+CGG | - | chr1_3:7872307-7872326 | Msa0101280:intron | 25.0% |
| !! | ATAATGTGGTATTGGATTTA+GGG | - | chr1_3:7872424-7872443 | Msa0101280:intron | 25.0% |
| !! | TATAATGTGGTATTGGATTT+AGG | - | chr1_3:7872425-7872444 | Msa0101280:intron | 25.0% |
| !! | TAGATTTAACGTATGTTTTG+AGG | + | chr1_3:7872672-7872691 | Msa0101290:intron | 25.0% |
| TGGAAAAATGTCAGTGTTAA+CGG | + | chr1_3:7869896-7869915 | Msa0101290:CDS | 30.0% | |
| TTCCAAATTTCATTTGGCAT+TGG | + | chr1_3:7870021-7870040 | Msa0101290:CDS | 30.0% | |
| TGTACAAGTATTACAGTGTA+TGG | + | chr1_3:7870072-7870091 | Msa0101290:CDS | 30.0% | |
| GTACAAGTATTACAGTGTAT+GGG | + | chr1_3:7870073-7870092 | Msa0101290:CDS | 30.0% | |
| ! | TACGAATTTAGCTTATGCTT+GGG | + | chr1_3:7870261-7870280 | Msa0101290:CDS | 30.0% |
| GTGTTAAGAATTATTGTTGG+TGG | + | chr1_3:7870331-7870350 | Msa0101290:CDS | 30.0% | |
| !! | AAGAATTATTGTTGGTGGTA+AGG | + | chr1_3:7870336-7870355 | Msa0101290:CDS | 30.0% |
| CCAATTATAACAGAGTATAG+TGG | - | chr1_3:7870514-7870533 | Msa0101280:intron | 30.0% | |
| CCACTATACTCTGTTATAAT+TGG | + | chr1_3:7870511-7870530 | Msa0101290:CDS | 30.0% | |
| AGATGTTTCAATTCAAGAGT+TGG | + | chr1_3:7870534-7870553 | Msa0101290:CDS | 30.0% | |
| !! | CAAATTCTCTGAAACATCAA+AGG | + | chr1_3:7870573-7870592 | Msa0101290:CDS | 30.0% |
| ! | AAGACATAAGTTGAGAATAG+AGG | - | chr1_3:7870638-7870657 | Msa0101280:intron | 30.0% |
| TCTATTCTCAACTTATGTCT+TGG | + | chr1_3:7870637-7870656 | Msa0101290:CDS | 30.0% | |
| AACTTATGTCTTGGAATTCA+TGG | + | chr1_3:7870646-7870665 | Msa0101290:CDS | 30.0% | |
| AGAGGTGAATGAAGAAAATA+AGG | - | chr1_3:7870875-7870894 | Msa0101280:intron | 30.0% | |
| ATCTATGATATTTGCACTTG+TGG | + | chr1_3:7870942-7870961 | Msa0101290:CDS | 30.0% | |
| TCTATGATATTTGCACTTGT+GGG | + | chr1_3:7870943-7870962 | Msa0101290:CDS | 30.0% | |
| ! | AGTTTATAATGCTTTTGTCC+TGG | + | chr1_3:7870969-7870988 | Msa0101290:CDS | 30.0% |
| ! | GTTTATAATGCTTTTGTCCT+GGG | + | chr1_3:7870970-7870989 | Msa0101290:CDS | 30.0% |
| ! | GATTAATGAGGCGTTTAATT+GGG | + | chr1_3:7871011-7871030 | Msa0101290:CDS | 30.0% |
| ! | TCTTGATTTTCCTTCTGATA+AGG | + | chr1_3:7871089-7871108 | Msa0101290:CDS | 30.0% |
| ! | CTTGATTTTCCTTCTGATAA+GGG | + | chr1_3:7871090-7871109 | Msa0101290:CDS | 30.0% |
| TTCATAATTCCCTTATCAGA+AGG | - | chr1_3:7871102-7871121 | Msa0101280:intron | 30.0% | |
| !!! | TGTTATTTTGGATGAGACTA+CGG | + | chr1_3:7871226-7871245 | Msa0101290:CDS | 30.0% |
| TGGGCATTAAAGAAGAAAAT+TGG | - | chr1_3:7871297-7871316 | Msa0101280:intron | 30.0% | |
| !!! | TGTGTTGTTTTTATTGTTGG+TGG | + | chr1_3:7871321-7871340 | Msa0101290:CDS | 30.0% |
| ATGGTTATGTTGAAGTGAAT+TGG | + | chr1_3:7871352-7871371 | Msa0101290:CDS | 30.0% | |
| TATGTTGAAGTGAATTGGTT+TGG | + | chr1_3:7871357-7871376 | Msa0101290:CDS | 30.0% | |
| CAACATAGAAATGAAATAGG+TGG | - | chr1_3:7871456-7871475 | Msa0101280:intron | 30.0% | |
| TGTATTGCAAAGAATGCTTA+TGG | + | chr1_3:7871474-7871493 | Msa0101290:CDS | 30.0% | |
| ATGTTAGAAGTGAAACATTG+CGG | - | chr1_3:7871684-7871703 | Msa0101280:intron | 30.0% | |
| GATATGGAAAAAATAGCCAA+CGG | - | chr1_3:7871724-7871743 | Msa0101280:intron | 30.0% | |
| !! | AGGACAAGGTTGATTTTAAT+GGG | + | chr1_3:7871846-7871865 | Msa0101290:intron | 30.0% |
| TTGATTCCACTTTAATGACT+TGG | - | chr1_3:7871905-7871924 | Msa0101280:intron | 30.0% | |
| TCAACAATTGGTTAGAGAAA+AGG | + | chr1_3:7871921-7871940 | Msa0101290:intron | 30.0% | |
| CAACAATTGGTTAGAGAAAA+GGG | + | chr1_3:7871922-7871941 | Msa0101290:intron | 30.0% | |
| TCACTTGATCCAACAATTAA+GGG | + | chr1_3:7871952-7871971 | Msa0101290:intron | 30.0% | |
| TTAGAAAGGAATAAAAGCAG+TGG | - | chr1_3:7872274-7872293 | Msa0101280:intron | 30.0% | |
| !!! | AGTTGAGTTTTTTTTACGGA+TGG | - | chr1_3:7872303-7872322 | Msa0101280:intron | 30.0% |
| !!! | TGCTGAAAGGTTTTGTTAAT+TGG | - | chr1_3:7872358-7872377 | Msa0101280:intron | 30.0% |
| GTGAATAAGTTAATGCTGAA+AGG | - | chr1_3:7872371-7872390 | Msa0101280:intron | 30.0% | |
| ATGAATAAACCTTAGCATCA+CGG | + | chr1_3:7872540-7872559 | Msa0101290:intron | 30.0% | |
| AGCTAACACATTGAAAACAA+TGG | - | chr1_3:7872879-7872898 | None:intergenic | 30.0% | |
| TTCAATGTGTTAGCTATGAA+TGG | + | chr1_3:7872884-7872903 | Msa0101290:CDS | 30.0% | |
| ! | TTGCAACAGCTCAAGAATTT+TGG | - | chr1_3:7869393-7869412 | Msa0101280:intron | 35.0% |
| GTAACAGAATGTTCCTCTAT+TGG | - | chr1_3:7869485-7869504 | Msa0101280:intron | 35.0% | |
| GACGATTAAATTCTTCACCT+GGG | - | chr1_3:7869519-7869538 | Msa0101280:intron | 35.0% | |
| TGACGATTAAATTCTTCACC+TGG | - | chr1_3:7869520-7869539 | Msa0101280:intron | 35.0% | |
| GCATTGAAATCAATTGAAGG+AGG | - | chr1_3:7869551-7869570 | Msa0101280:intron | 35.0% | |
| ! | CCAGCATTGAAATCAATTGA+AGG | - | chr1_3:7869554-7869573 | Msa0101280:intron | 35.0% |
| ! | CCTTCAATTGATTTCAATGC+TGG | + | chr1_3:7869551-7869570 | Msa0101290:CDS | 35.0% |
| AACTACAAATCTACTTGACG+CGG | + | chr1_3:7869574-7869593 | Msa0101290:CDS | 35.0% | |
| ! | ACATTTTTCCAAACAGGTAG+TGG | - | chr1_3:7869887-7869906 | Msa0101280:intron | 35.0% |
| ! | ACACTGACATTTTTCCAAAC+AGG | - | chr1_3:7869893-7869912 | Msa0101280:intron | 35.0% |
| GTTTCAAATCAATGACTCCT+TGG | + | chr1_3:7869922-7869941 | Msa0101290:CDS | 35.0% | |
| ! | GTAAGGATTTTATGTGTGTG+AGG | - | chr1_3:7869971-7869990 | Msa0101280:intron | 35.0% |
| GACCAATGCCAAATGAAATT+TGG | - | chr1_3:7870026-7870045 | Msa0101280:intron | 35.0% | |
| !! | ATTTCATTTGGCATTGGTCA+AGG | + | chr1_3:7870027-7870046 | Msa0101290:CDS | 35.0% |
| ! | ATTACAGTGTATGGGTTTTG+AGG | + | chr1_3:7870081-7870100 | Msa0101290:CDS | 35.0% |
| GGAAGAAGAAAATGCTAAAG+TGG | + | chr1_3:7870102-7870121 | Msa0101290:CDS | 35.0% | |
| TGCTATAAAGGGGATTTAGT+TGG | + | chr1_3:7870148-7870167 | Msa0101290:CDS | 35.0% | |
| ! | CATTTTTGTGCCACAAATTC+TGG | + | chr1_3:7870177-7870196 | Msa0101290:CDS | 35.0% |
| ! | CTACGAATTTAGCTTATGCT+TGG | + | chr1_3:7870260-7870279 | Msa0101290:CDS | 35.0% |
| ! | GGGGTGTTAAGAATTATTGT+TGG | + | chr1_3:7870328-7870347 | Msa0101290:CDS | 35.0% |
| TAAGGAAATACACGGTGTAA+TGG | + | chr1_3:7870354-7870373 | Msa0101290:CDS | 35.0% | |
| AAGGAAATACACGGTGTAAT+GGG | + | chr1_3:7870355-7870374 | Msa0101290:CDS | 35.0% | |
| !! | GTCTCTAGAACTATTCTCAA+AGG | + | chr1_3:7870469-7870488 | Msa0101290:CDS | 35.0% |
| CTTGGAATTCATGGTAACTT+TGG | + | chr1_3:7870655-7870674 | Msa0101290:CDS | 35.0% | |
| GCAAGTCAATCTTTCAATTC+TGG | + | chr1_3:7870784-7870803 | Msa0101290:CDS | 35.0% | |
| TCTTCCACTAACTGAATCTT+GGG | - | chr1_3:7870910-7870929 | Msa0101280:intron | 35.0% | |
| TTCTTCCACTAACTGAATCT+TGG | - | chr1_3:7870911-7870930 | Msa0101280:intron | 35.0% | |
| CTATGATATTTGCACTTGTG+GGG | + | chr1_3:7870944-7870963 | Msa0101290:CDS | 35.0% | |
| ! | GGATTAATGAGGCGTTTAAT+TGG | + | chr1_3:7871010-7871029 | Msa0101290:CDS | 35.0% |
| GTTTAATTGGGTGCATACAA+TGG | + | chr1_3:7871023-7871042 | Msa0101290:CDS | 35.0% | |
| GTGCATACAATGGTAGAATA+TGG | + | chr1_3:7871033-7871052 | Msa0101290:CDS | 35.0% | |
| ! | GGGAATTATGAACTTGTTCA+TGG | + | chr1_3:7871110-7871129 | Msa0101290:CDS | 35.0% |
| TCAGGTTTGACAAAATGGTT+TGG | + | chr1_3:7871258-7871277 | Msa0101290:CDS | 35.0% | |
| !! | ATTGTTGGTGGCTATGTTAA+TGG | + | chr1_3:7871333-7871352 | Msa0101290:CDS | 35.0% |
| ATCTATTGGTGCATTACTCA+GGG | - | chr1_3:7871385-7871404 | Msa0101280:intron | 35.0% | |
| GAATATGGAACTCCATCTAT+TGG | - | chr1_3:7871399-7871418 | Msa0101280:intron | 35.0% | |
| !! | TATGGCTCTAAGAACTTGTT+AGG | + | chr1_3:7871492-7871511 | Msa0101290:CDS | 35.0% |
| TGGCCTAAAGTTACAAACAT+TGG | + | chr1_3:7871566-7871585 | Msa0101290:CDS | 35.0% | |
| CCACCAATGTTTGTAACTTT+AGG | - | chr1_3:7871572-7871591 | Msa0101280:intron | 35.0% | |
| CCTAAAGTTACAAACATTGG+TGG | + | chr1_3:7871569-7871588 | Msa0101290:CDS | 35.0% | |
| ATGACTCATCTATTGATGTC+AGG | + | chr1_3:7871609-7871628 | Msa0101290:CDS | 35.0% | |
| TGACTCATCTATTGATGTCA+GGG | + | chr1_3:7871610-7871629 | Msa0101290:CDS | 35.0% | |
| GCAATGTTTCACTTCTAACA+TGG | + | chr1_3:7871683-7871702 | Msa0101290:intron | 35.0% | |
| !!! | GTGTTTTTGATTTCAACCGT+TGG | + | chr1_3:7871705-7871724 | Msa0101290:intron | 35.0% |
| !! | ACTCTAAGGACCTTTTGATA+TGG | - | chr1_3:7871740-7871759 | Msa0101280:intron | 35.0% |
| !! | TGGATGTTTTATTGTCCATG+TGG | + | chr1_3:7871779-7871798 | Msa0101290:intron | 35.0% |
| ATAAAGTAGCAACTTCCACA+TGG | - | chr1_3:7871797-7871816 | Msa0101280:intron | 35.0% | |
| TAAAATCAACCTTGTCCTCA+AGG | - | chr1_3:7871844-7871863 | Msa0101280:intron | 35.0% | |
| !! | GAGGACAAGGTTGATTTTAA+TGG | + | chr1_3:7871845-7871864 | Msa0101290:intron | 35.0% |
| !! | GGACAAGGTTGATTTTAATG+GGG | + | chr1_3:7871847-7871866 | Msa0101290:intron | 35.0% |
| !! | GACAAGGTTGATTTTAATGG+GGG | + | chr1_3:7871848-7871867 | Msa0101290:intron | 35.0% |
| !! | ACAAGGTTGATTTTAATGGG+GGG | + | chr1_3:7871849-7871868 | Msa0101290:intron | 35.0% |
| !! | GACTTGGCTTTGCTTATATT+TGG | - | chr1_3:7871889-7871908 | Msa0101280:intron | 35.0% |
| GTCACTTGATCCAACAATTA+AGG | + | chr1_3:7871951-7871970 | Msa0101290:intron | 35.0% | |
| TCTTCTATAAAAGGGAGCAA+TGG | + | chr1_3:7872004-7872023 | Msa0101290:intron | 35.0% | |
| CAATGGTTAACAAGAAGGAT+AGG | + | chr1_3:7872021-7872040 | Msa0101290:intron | 35.0% | |
| ! | TTACACCATCCCAAACTTTT+TGG | + | chr1_3:7872238-7872257 | Msa0101290:intron | 35.0% |
| CATTAATTACCGTGATGCTA+AGG | - | chr1_3:7872552-7872571 | Msa0101280:CDS | 35.0% | |
| TACGTTAAATCTAGACTTCC+TGG | - | chr1_3:7872665-7872684 | Msa0101280:CDS | 35.0% | |
| TACAGTGAGAGAATGGAATT+TGG | + | chr1_3:7872739-7872758 | Msa0101290:CDS | 35.0% | |
| ACAGTGAGAGAATGGAATTT+GGG | + | chr1_3:7872740-7872759 | Msa0101290:CDS | 35.0% | |
| ATGTGTTAGCTATGAATGGA+TGG | + | chr1_3:7872888-7872907 | Msa0101290:CDS | 35.0% | |
| TGAACGAAGAAGATAGAGAA+AGG | + | chr1_3:7872915-7872934 | Msa0101290:CDS | 35.0% | |
| GAACGAAGAAGATAGAGAAA+GGG | + | chr1_3:7872916-7872935 | Msa0101290:CDS | 35.0% | |
| AACGAAGAAGATAGAGAAAG+GGG | + | chr1_3:7872917-7872936 | Msa0101290:CDS | 35.0% | |
| AATTCTTGAGCTGTTGCAAG+AGG | + | chr1_3:7869394-7869413 | Msa0101290:CDS | 40.0% | |
| !! | ATGTTCCTCTATTGGTTCCA+CGG | - | chr1_3:7869477-7869496 | Msa0101280:intron | 40.0% |
| !! | TGTGGTTTTCAGAAGAGCAT+TGG | + | chr1_3:7869659-7869678 | Msa0101290:CDS | 40.0% |
| ! | AGATCGAAGCGTTCAAAAGA+CGG | + | chr1_3:7869736-7869755 | Msa0101290:CDS | 40.0% |
| CGACGAAATTTCATTCGAAG+TGG | + | chr1_3:7869762-7869781 | Msa0101290:CDS | 40.0% | |
| GAAATCAAACAAGGATGCCA+AGG | - | chr1_3:7869942-7869961 | Msa0101280:intron | 40.0% | |
| AGGACGAAGGAAATCAAACA+AGG | - | chr1_3:7869951-7869970 | Msa0101280:intron | 40.0% | |
| ! | TTTTATGTGTGTGAGGACGA+AGG | - | chr1_3:7869964-7869983 | Msa0101280:intron | 40.0% |
| !! | GTTGGTGGTAAGGAAATACA+CGG | + | chr1_3:7870346-7870365 | Msa0101290:CDS | 40.0% |
| GGAATTCATGGTAACTTTGG+TGG | + | chr1_3:7870658-7870677 | Msa0101290:CDS | 40.0% | |
| CTTTCAATTCTGGTGACTCA+AGG | + | chr1_3:7870794-7870813 | Msa0101290:CDS | 40.0% | |
| CAATTAAAATGGCCACCTCA+TGG | - | chr1_3:7870852-7870871 | Msa0101280:intron | 40.0% | |
| CTTGGGTACAGAAATAGAAG+AGG | - | chr1_3:7870893-7870912 | Msa0101280:intron | 40.0% | |
| TGTACCCAAGATTCAGTTAG+TGG | + | chr1_3:7870903-7870922 | Msa0101290:CDS | 40.0% | |
| AAACGCCTCATTAATCCCAT+AGG | - | chr1_3:7871007-7871026 | Msa0101280:intron | 40.0% | |
| ACAAGTCCATAGATGCAACA+GGG | + | chr1_3:7871157-7871176 | Msa0101290:CDS | 40.0% | |
| ATCATTCCCTGTTGCATCTA+TGG | - | chr1_3:7871166-7871185 | Msa0101280:intron | 40.0% | |
| !!! | CTGTGGTAGTGGTGTTATTT+TGG | + | chr1_3:7871214-7871233 | Msa0101290:CDS | 40.0% |
| TGGCATCAGGTTTGACAAAA+TGG | + | chr1_3:7871253-7871272 | Msa0101290:CDS | 40.0% | |
| CATCTATTGGTGCATTACTC+AGG | - | chr1_3:7871386-7871405 | Msa0101280:intron | 40.0% | |
| CTGAGTAATGCACCAATAGA+TGG | + | chr1_3:7871384-7871403 | Msa0101290:CDS | 40.0% | |
| !! | CTAAGAACTTGTTAGGTGTG+AGG | + | chr1_3:7871499-7871518 | Msa0101290:CDS | 40.0% |
| !! | CTTGAGAAGTACCACTAGTT+TGG | + | chr1_3:7871533-7871552 | Msa0101290:CDS | 40.0% |
| ACTCTCATGAACCAAACTAG+TGG | - | chr1_3:7871547-7871566 | Msa0101280:intron | 40.0% | |
| ! | ACTAGTTTGGTTCATGAGAG+TGG | + | chr1_3:7871546-7871565 | Msa0101290:CDS | 40.0% |
| CATCTATTGATGTCAGGGTT+AGG | + | chr1_3:7871615-7871634 | Msa0101290:CDS | 40.0% | |
| GGAACATATCAAGACACCAA+AGG | + | chr1_3:7871636-7871655 | Msa0101290:CDS | 40.0% | |
| TTGCATGCAAACAGAACCTT+TGG | - | chr1_3:7871655-7871674 | Msa0101280:intron | 40.0% | |
| !! | GTCCTTAGAGTTCAAGTTGT+GGG | + | chr1_3:7871749-7871768 | Msa0101290:intron | 40.0% |
| ATCCCACAACTTGAACTCTA+AGG | - | chr1_3:7871754-7871773 | Msa0101280:intron | 40.0% | |
| TGGACAATAAAACATCCACC+AGG | - | chr1_3:7871777-7871796 | Msa0101280:intron | 40.0% | |
| CAAGGTTGGAGTCAAGATAA+TGG | - | chr1_3:7871826-7871845 | Msa0101280:intron | 40.0% | |
| TTATCTTGACTCCAACCTTG+AGG | + | chr1_3:7871826-7871845 | Msa0101290:intron | 40.0% | |
| GCAAAGCCAAGTCATTAAAG+TGG | + | chr1_3:7871896-7871915 | Msa0101290:intron | 40.0% | |
| !! | CTCTACTAGAGAGTACCAAA+GGG | - | chr1_3:7872079-7872098 | Msa0101280:intron | 40.0% |
| !! | ACTCTACTAGAGAGTACCAA+AGG | - | chr1_3:7872080-7872099 | Msa0101280:intron | 40.0% |
| GAAAGGAATAAAAGCAGTGG+CGG | - | chr1_3:7872271-7872290 | Msa0101280:intron | 40.0% | |
| !!! | ACGGATGGAGTGTTTTAGAA+AGG | - | chr1_3:7872288-7872307 | Msa0101280:intron | 40.0% |
| TGTTGTTCTTCAGGAAGGAA+CGG | - | chr1_3:7872585-7872604 | Msa0101280:intron | 40.0% | |
| ! | TATTGCTCGTGTTGTTCTTC+AGG | - | chr1_3:7872594-7872613 | Msa0101280:intron | 40.0% |
| TTCGCTGCTCAAACTATCAT+CGG | - | chr1_3:7872638-7872657 | Msa0101280:CDS | 40.0% | |
| GTTAAATCTAGACTTCCTGG+TGG | - | chr1_3:7872662-7872681 | Msa0101280:CDS | 40.0% | |
| !!! | TGTTTTGAGGTCAGCGATTT+CGG | + | chr1_3:7872685-7872704 | Msa0101290:intron | 40.0% |
| TTGCAGTTACAGTGAGAGAA+TGG | + | chr1_3:7872732-7872751 | Msa0101290:CDS | 40.0% | |
| !!! | GGTTGGTTTGGAAGAGATTT+TGG | + | chr1_3:7872802-7872821 | Msa0101290:CDS | 40.0% |
| !! | TGGTTTGGAAGAGATTTTGG+AGG | + | chr1_3:7872805-7872824 | Msa0101290:CDS | 40.0% |
| GGAAGATGTGAGAGATGATA+AGG | + | chr1_3:7872847-7872866 | Msa0101290:CDS | 40.0% | |
| !! | GAATTTTGGCACACGACTCT+CGG | - | chr1_3:7869379-7869398 | Msa0101280:intron | 45.0% |
| ! | GCAACAACTTCGTCTGAAGT+CGG | - | chr1_3:7869452-7869471 | Msa0101280:intron | 45.0% |
| TCTTCACCTGGGATGATTCA+CGG | - | chr1_3:7869508-7869527 | Msa0101280:intron | 45.0% | |
| ! | CTCTTCTGAAAACCACACTC+TGG | - | chr1_3:7869656-7869675 | Msa0101280:intron | 45.0% |
| ! | TTTTGAACGCTTCGATCTGG+CGG | - | chr1_3:7869734-7869753 | Msa0101280:intron | 45.0% |
| ! | GTCTTTTGAACGCTTCGATC+TGG | - | chr1_3:7869737-7869756 | Msa0101280:intron | 45.0% |
| !! | ACTGCTCTGGAATTGTCATC+GGG | - | chr1_3:7869821-7869840 | Msa0101280:intron | 45.0% |
| !! | CACTGCTCTGGAATTGTCAT+CGG | - | chr1_3:7869822-7869841 | Msa0101280:intron | 45.0% |
| CAGTTTGTCCACTACCTGTT+TGG | + | chr1_3:7869876-7869895 | Msa0101290:CDS | 45.0% | |
| !! | GCTTGGGCTGTTTTACTTCA+TGG | + | chr1_3:7870277-7870296 | Msa0101290:CDS | 45.0% |
| CCACAATTACTCAGCAAGGT+GGG | - | chr1_3:7870310-7870329 | Msa0101280:intron | 45.0% | |
| CCACCTTGCTGAGTAATTGT+GGG | + | chr1_3:7870308-7870327 | Msa0101290:CDS | 45.0% | |
| CACCTTGCTGAGTAATTGTG+GGG | + | chr1_3:7870309-7870328 | Msa0101290:CDS | 45.0% | |
| !! | AATACACGGTGTAATGGGTG+AGG | + | chr1_3:7870360-7870379 | Msa0101290:CDS | 45.0% |
| ATCAAACAGTGACGCAGTTC+AGG | + | chr1_3:7870417-7870436 | Msa0101290:CDS | 45.0% | |
| ! | TTTGGTGGTCTCTCTTGTCA+TGG | + | chr1_3:7870673-7870692 | Msa0101290:CDS | 45.0% |
| TGGGAAAATGCCTAGCCTAT+GGG | + | chr1_3:7870989-7871008 | Msa0101290:CDS | 45.0% | |
| CCTCATTAATCCCATAGGCT+AGG | - | chr1_3:7871002-7871021 | Msa0101280:intron | 45.0% | |
| CCTAGCCTATGGGATTAATG+AGG | + | chr1_3:7870999-7871018 | Msa0101290:CDS | 45.0% | |
| CTGTTGCATCTATGGACTTG+TGG | - | chr1_3:7871158-7871177 | Msa0101280:intron | 45.0% | |
| CACAAGTCCATAGATGCAAC+AGG | + | chr1_3:7871156-7871175 | Msa0101290:CDS | 45.0% | |
| ! | CCACAGCTTTAGTGAGACTT+GGG | - | chr1_3:7871200-7871219 | Msa0101280:intron | 45.0% |
| ! | ACCACAGCTTTAGTGAGACT+TGG | - | chr1_3:7871201-7871220 | Msa0101280:intron | 45.0% |
| TCTCACTAAAGCTGTGGTAG+TGG | + | chr1_3:7871203-7871222 | Msa0101290:CDS | 45.0% | |
| TTGGATGAGACTACGGCAAA+TGG | + | chr1_3:7871233-7871252 | Msa0101290:CDS | 45.0% | |
| !! | ATGAAATAGGTGGACTGTGC+AGG | - | chr1_3:7871446-7871465 | Msa0101280:intron | 45.0% |
| !! | GGTCCTTAGAGTTCAAGTTG+TGG | + | chr1_3:7871748-7871767 | Msa0101290:intron | 45.0% |
| ATCAACCTTGTCCTCAAGGT+TGG | - | chr1_3:7871840-7871859 | Msa0101280:intron | 45.0% | |
| GGGAGCAATGGTTAACAAGA+AGG | + | chr1_3:7872016-7872035 | Msa0101290:intron | 45.0% | |
| CCAGACCAAAAAGTTTGGGA+TGG | - | chr1_3:7872246-7872265 | Msa0101280:intron | 45.0% | |
| !! | CCATCCCAAACTTTTTGGTC+TGG | + | chr1_3:7872243-7872262 | Msa0101290:intron | 45.0% |
| GGAGCCAGACCAAAAAGTTT+GGG | - | chr1_3:7872250-7872269 | Msa0101280:intron | 45.0% | |
| GTTGTTCTTCAGGAAGGAAC+GGG | - | chr1_3:7872584-7872603 | Msa0101280:intron | 45.0% | |
| ! | AATAGCAGTTTTCCGACGAC+CGG | + | chr1_3:7872610-7872629 | Msa0101290:intron | 45.0% |
| GCTCAAACTATCATCGGTAC+CGG | - | chr1_3:7872632-7872651 | Msa0101280:intron | 45.0% | |
| !!! | GTTTTGAGGTCAGCGATTTC+GGG | + | chr1_3:7872686-7872705 | Msa0101290:intron | 45.0% |
| !! | GGAAGAGATTTTGGAGGAGA+AGG | + | chr1_3:7872811-7872830 | Msa0101290:CDS | 45.0% |
| TGTTACCCGTGAATCATCCC+AGG | + | chr1_3:7869499-7869518 | Msa0101290:CDS | 50.0% | |
| CTTCACCTGGGATGATTCAC+GGG | - | chr1_3:7869507-7869526 | Msa0101280:intron | 50.0% | |
| ACTTGACGCGGATACGAAGA+AGG | + | chr1_3:7869586-7869605 | Msa0101290:CDS | 50.0% | |
| AACATCGCAACACCAGAGTG+TGG | + | chr1_3:7869641-7869660 | Msa0101290:CDS | 50.0% | |
| !! | GAGCATTGGAATGATCGCAG+CGG | + | chr1_3:7869673-7869692 | Msa0101290:CDS | 50.0% |
| !! | CTCTGGAATTGTCATCGGGT+GGG | - | chr1_3:7869817-7869836 | Msa0101280:intron | 50.0% |
| CGATGACAATTCCAGAGCAG+TGG | + | chr1_3:7869820-7869839 | Msa0101290:CDS | 50.0% | |
| AAGTATGGAGTCCACTGCTC+TGG | - | chr1_3:7869834-7869853 | Msa0101280:intron | 50.0% | |
| CCCACCTTGCTGAGTAATTG+TGG | + | chr1_3:7870307-7870326 | Msa0101290:CDS | 50.0% | |
| CCCACAATTACTCAGCAAGG+TGG | - | chr1_3:7870311-7870330 | Msa0101280:intron | 50.0% | |
| CACCCCACAATTACTCAGCA+AGG | - | chr1_3:7870314-7870333 | Msa0101280:intron | 50.0% | |
| !! | TGTAATGGGTGAGGAAGGTC+TGG | + | chr1_3:7870369-7870388 | Msa0101290:CDS | 50.0% |
| TTCTGGTGACTCAAGGCTGA+TGG | + | chr1_3:7870801-7870820 | Msa0101290:CDS | 50.0% | |
| TCTGGTGACTCAAGGCTGAT+GGG | + | chr1_3:7870802-7870821 | Msa0101290:CDS | 50.0% | |
| AATGGCCACCTCATGGAGTT+TGG | - | chr1_3:7870845-7870864 | Msa0101280:intron | 50.0% | |
| ! | CATAGGCTAGGCATTTTCCC+AGG | - | chr1_3:7870990-7871009 | Msa0101280:intron | 50.0% |
| CTGGGAAAATGCCTAGCCTA+TGG | + | chr1_3:7870988-7871007 | Msa0101290:CDS | 50.0% | |
| CCCAAGTCTCACTAAAGCTG+TGG | + | chr1_3:7871197-7871216 | Msa0101290:CDS | 50.0% | |
| AGACTACGGCAAATGGCATC+AGG | + | chr1_3:7871240-7871259 | Msa0101290:CDS | 50.0% | |
| !! | GAGTTCAAGTTGTGGGATCC+TGG | + | chr1_3:7871756-7871775 | Msa0101290:intron | 50.0% |
| !! | TTCAAGTTGTGGGATCCTGG+TGG | + | chr1_3:7871759-7871778 | Msa0101290:intron | 50.0% |
| TGACTCCAACCTTGAGGACA+AGG | + | chr1_3:7871832-7871851 | Msa0101290:intron | 50.0% | |
| GTCTCTTCTCTCTCTCCCTT+TGG | + | chr1_3:7872061-7872080 | Msa0101290:intron | 50.0% | |
| CGGAGCCAGACCAAAAAGTT+TGG | - | chr1_3:7872251-7872270 | Msa0101280:intron | 50.0% | |
| ! | GCTCGTGTTGTTCTTCAGGA+AGG | - | chr1_3:7872590-7872609 | Msa0101280:intron | 50.0% |
| GAATTTGGGAGAGCGAGAGA+GGG | + | chr1_3:7872754-7872773 | Msa0101290:CDS | 50.0% | |
| ! | GAGAGAGAGAGTGGTTGGTT+TGG | + | chr1_3:7872790-7872809 | Msa0101290:CDS | 50.0% |
| AGGAGAAGGAGAGTGAAGAG+AGG | + | chr1_3:7872825-7872844 | Msa0101290:CDS | 50.0% | |
| GGAGAAGGAGAGTGAAGAGA+GGG | + | chr1_3:7872826-7872845 | Msa0101290:CDS | 50.0% | |
| AGAGGAGATAGACGCTACCG+AGG | + | chr1_3:7869412-7869431 | Msa0101290:CDS | 55.0% | |
| AGACGAAGTTGTTGCGTCCG+TGG | + | chr1_3:7869457-7869476 | Msa0101290:CDS | 55.0% | |
| TGCGTCCGTGGAACCAATAG+AGG | + | chr1_3:7869469-7869488 | Msa0101290:CDS | 55.0% | |
| !! | CTTCGATCTGGCGGTTTTGG+TGG | - | chr1_3:7869725-7869744 | Msa0101280:intron | 55.0% |
| ! | ACGCTTCGATCTGGCGGTTT+TGG | - | chr1_3:7869728-7869747 | Msa0101280:intron | 55.0% |
| GAATTGTCATCGGGTGGGTG+TGG | - | chr1_3:7869812-7869831 | Msa0101280:intron | 55.0% | |
| !! | GCTCTGGAATTGTCATCGGG+TGG | - | chr1_3:7869818-7869837 | Msa0101280:intron | 55.0% |
| !! | CACGGTGTAATGGGTGAGGA+AGG | + | chr1_3:7870364-7870383 | Msa0101290:CDS | 55.0% |
| TGACTCAAGGCTGATGGGAG+TGG | + | chr1_3:7870807-7870826 | Msa0101290:CDS | 55.0% | |
| CAAGGCTGATGGGAGTGGAA+TGG | + | chr1_3:7870812-7870831 | Msa0101290:CDS | 55.0% | |
| GCTGAGTGCCAAACTCCATG+AGG | + | chr1_3:7870834-7870853 | Msa0101290:CDS | 55.0% | |
| GAGTGCCAAACTCCATGAGG+TGG | + | chr1_3:7870837-7870856 | Msa0101290:CDS | 55.0% | |
| !! | CTATCATCGGTACCGGTCGT+CGG | - | chr1_3:7872625-7872644 | Msa0101280:intron | 55.0% |
| GTTTGAGCAGCGAATCCACC+AGG | + | chr1_3:7872644-7872663 | Msa0101290:intron | 55.0% | |
| !! | GAGGTCAGCGATTTCGGGTT+CGG | + | chr1_3:7872691-7872710 | Msa0101290:intron | 55.0% |
| GGAATTTGGGAGAGCGAGAG+AGG | + | chr1_3:7872753-7872772 | Msa0101290:CDS | 55.0% | |
| CGAGAGAGGGAGAAGGTTCT+GGG | + | chr1_3:7872767-7872786 | Msa0101290:CDS | 55.0% | |
| GAGAGAGGGAGAAGGTTCTG+GGG | + | chr1_3:7872768-7872787 | Msa0101290:CDS | 55.0% | |
| ! | GGTGGAGGCATGCTGCATTC+CGG | - | chr1_3:7869701-7869720 | Msa0101280:intron | 60.0% |
| !! | CGATCTGGCGGTTTTGGTGG+CGG | - | chr1_3:7869722-7869741 | Msa0101280:intron | 60.0% |
| GTGGTGGTCGAAGCATGGTG+AGG | - | chr1_3:7869790-7869809 | Msa0101280:intron | 60.0% | |
| !! | GTGTGGTGGTGGTCGAAGCA+TGG | - | chr1_3:7869795-7869814 | Msa0101280:intron | 60.0% |
| TTGTCATCGGGTGGGTGTGG+TGG | - | chr1_3:7869809-7869828 | Msa0101280:intron | 60.0% | |
| !! | TCAGCGATTTCGGGTTCGGC+AGG | + | chr1_3:7872695-7872714 | Msa0101290:intron | 60.0% |
| !! | CAGCGATTTCGGGTTCGGCA+GGG | + | chr1_3:7872696-7872715 | Msa0101290:intron | 60.0% |
| !! | AGCGATTTCGGGTTCGGCAG+GGG | + | chr1_3:7872697-7872716 | Msa0101290:intron | 60.0% |
| GCGAGAGAGGGAGAAGGTTC+TGG | + | chr1_3:7872766-7872785 | Msa0101290:CDS | 60.0% | |
| !! | GGTTCTGGGGAGAGAGAGAG+TGG | + | chr1_3:7872781-7872800 | Msa0101290:CDS | 60.0% |
| CTGGGGAGAGAGAGAGTGGT+TGG | + | chr1_3:7872785-7872804 | Msa0101290:CDS | 60.0% | |
| !! | CGGAAGTGCTTCGCTCGCCT+CGG | - | chr1_3:7869432-7869451 | Msa0101280:intron | 65.0% |
| TGGAATGATCGCAGCGGCGC+CGG | + | chr1_3:7869679-7869698 | Msa0101290:CDS | 65.0% | |
| !!! | TCTGGCGGTTTTGGTGGCGG+TGG | - | chr1_3:7869719-7869738 | Msa0101280:intron | 65.0% |
| TCATCGGGTGGGTGTGGTGG+TGG | - | chr1_3:7869806-7869825 | Msa0101280:intron | 65.0% | |
| GGGAGAGCGAGAGAGGGAGA+AGG | + | chr1_3:7872760-7872779 | Msa0101290:CDS | 65.0% | |
| !!! | GGCGGTTTTGGTGGCGGTGG+AGG | - | chr1_3:7869716-7869735 | Msa0101280:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7869353 | 7872943 | 7869353 | ID=Msa0101290;Name=Msa0101290 |
| chr1_3 | mRNA | 7869353 | 7872943 | 7869353 | ID=Msa0101290-mRNA-1;Parent=Msa0101290;Name=Msa0101290-mRNA-1;_AED=0.25;_eAED=0.29;_QI=0|0|0|0.5|1|1|2|0|843 |
| chr1_3 | exon | 7869353 | 7871657 | 7869353 | ID=Msa0101290-mRNA-1:exon:3070;Parent=Msa0101290-mRNA-1 |
| chr1_3 | exon | 7872717 | 7872943 | 7872717 | ID=Msa0101290-mRNA-1:exon:3071;Parent=Msa0101290-mRNA-1 |
| chr1_3 | CDS | 7869353 | 7871657 | 7869353 | ID=Msa0101290-mRNA-1:cds;Parent=Msa0101290-mRNA-1 |
| chr1_3 | CDS | 7872717 | 7872943 | 7872717 | ID=Msa0101290-mRNA-1:cds;Parent=Msa0101290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
