AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0535060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0535060 MtrunA17_Chr4g0008871 98.039 255 5 0 1 255 1 255 0.0 526
Msa0535060 MtrunA17_Chr8g0388401 25.610 246 152 6 5 250 57 271 3.66e-19 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0535060 AT3G09250.3 61.140 193 69 3 67 254 39 230 1.05e-84 252
Msa0535060 AT3G09250.1 61.140 193 69 3 67 254 53 244 1.80e-84 252
Msa0535060 AT3G09250.2 59.341 182 68 3 67 243 39 219 3.30e-75 229
Msa0535060 AT4G10925.3 31.667 120 78 2 131 250 104 219 5.68e-17 77.8
Msa0535060 AT4G10925.2 31.667 120 78 2 131 250 104 219 5.68e-17 77.8
Msa0535060 AT4G10925.4 31.667 120 78 2 131 250 104 219 5.68e-17 77.8
Msa0535060 AT4G10925.5 31.667 120 78 2 131 250 104 219 5.68e-17 77.8
Msa0535060 AT4G10925.1 31.667 120 78 2 131 250 104 219 5.68e-17 77.8
Msa0535060 AT4G23960.2 29.839 124 76 3 135 255 73 188 6.19e-12 63.2

Find 61 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTAACTTATTTGGATTAA+AGG 0.134555 4_1:+10878476 None:intergenic
TTGCCAAAAGCTAACTTATT+TGG 0.143563 4_1:+10878468 None:intergenic
ATCGATGAGATTACTGAAAA+TGG 0.205967 4_1:+10877174 None:intergenic
ATGCTAAAGCAGCAGAAATA+AGG 0.234285 4_1:-10877845 Msa0535060:CDS
AAATTTACAACAACCGAAAA+AGG 0.234734 4_1:+10879055 None:intergenic
AGCTTTGAGATGTGGATTAA+TGG 0.250409 4_1:-10877299 Msa0535060:three_prime_UTR
GATAGCAACACAGCAGTATT+TGG 0.251611 4_1:-10877798 Msa0535060:CDS
AATCCAAATAAGTTAGCTTT+TGG 0.283724 4_1:-10878471 Msa0535060:CDS
CAAGGAGTTCAGTTTCTTGC+CGG 0.285437 4_1:-10878547 Msa0535060:CDS
CTTTCTCTTTGTTTCATCAA+TGG 0.304765 4_1:-10879840 Msa0535060:five_prime_UTR
TCAGAATAAGAATCCTTATC+TGG 0.310991 4_1:-10879101 Msa0535060:intron
ATTAGATGAAAACACTTTAG+AGG 0.343894 4_1:-10877901 Msa0535060:CDS
TCTTCTAGTTTGATTTGTAA+TGG 0.367473 4_1:+10877606 None:intergenic
GTTCAGTTTCTTGCCGGGTT+CGG 0.410478 4_1:-10878541 Msa0535060:CDS
TTGAGAGCTGGGATTTCGTA+TGG 0.419032 4_1:-10877644 Msa0535060:CDS
TGCTAAAGCAGCAGAAATAA+GGG 0.421596 4_1:-10877844 Msa0535060:CDS
TGCACCTACCTATGAGCATT+TGG 0.423056 4_1:-10877128 Msa0535060:three_prime_UTR
TGCAACTTGAGGCATTGATT+AGG 0.431017 4_1:+10878411 None:intergenic
ATCTTCTCATTTGCAACTTG+AGG 0.480992 4_1:+10878400 None:intergenic
CCGGATATTCCTTTCATGCC+AGG 0.481022 4_1:+10877681 None:intergenic
ATGTATCAATTCATATCTAC+TGG 0.481405 4_1:+10877435 None:intergenic
AAATTGTTAAAATGAGTAAG+AGG 0.486196 4_1:+10877388 None:intergenic
TGCTGCTTCCAAATGCTCAT+AGG 0.486319 4_1:+10877120 None:intergenic
CCTGGCATGAAAGGAATATC+CGG 0.486954 4_1:-10877681 Msa0535060:CDS
AATGTGTTCGAGAGGATCAA+TGG 0.487074 4_1:-10877489 Msa0535060:CDS
CTCAATAACATCATCATAGC+CGG 0.487596 4_1:+10877662 None:intergenic
GATGAAGTGCCTCCAGCCAC+AGG 0.493851 4_1:-10877270 Msa0535060:three_prime_UTR
GGCGACCTTGCAGCCATGCA+AGG 0.495354 4_1:-10877741 Msa0535060:CDS
ATGATGATGTTATTGAGAGC+TGG 0.502409 4_1:-10877656 Msa0535060:CDS
AAGGAGTTCAGTTTCTTGCC+GGG 0.510954 4_1:-10878546 Msa0535060:CDS
CTGAACATAAACACCAGATA+AGG 0.511267 4_1:+10879088 None:intergenic
ACATGCCTTGCATGGCTGCA+AGG 0.515179 4_1:+10877736 None:intergenic
GAGAAACCTTGTAACGGAAG+AGG 0.516416 4_1:+10879756 None:intergenic
GTTTCTGTCAGGGACACGAC+AGG 0.525904 4_1:-10877973 Msa0535060:intron
AGTTCATGCTAGAGGGGACA+TGG 0.526900 4_1:-10877577 Msa0535060:CDS
GACATTAAAGTTCATGCTAG+AGG 0.527041 4_1:-10877585 Msa0535060:CDS
CAGTCTTATTGCACATAACA+TGG 0.528861 4_1:-10877099 Msa0535060:three_prime_UTR
TTGCAGCCATGCAAGGCATG+TGG 0.533455 4_1:-10877734 Msa0535060:CDS
TGATGATGTTATTGAGAGCT+GGG 0.533980 4_1:-10877655 Msa0535060:CDS
GGGACTTTATTCTACTCTCA+AGG 0.545085 4_1:-10878565 Msa0535060:CDS
ACATTAAAGTTCATGCTAGA+GGG 0.562565 4_1:-10877584 Msa0535060:CDS
AAGCTATTGATGACCGAACC+CGG 0.564308 4_1:+10878528 None:intergenic
TGCAGCCATGCAAGGCATGT+GGG 0.568080 4_1:-10877733 Msa0535060:CDS
CATGGGGTACGTTACATGCA+TGG 0.569214 4_1:-10877559 Msa0535060:CDS
TGAGAGCTGGGATTTCGTAT+GGG 0.571314 4_1:-10877643 Msa0535060:CDS
TCTTTAGAAGCTTTGAGATG+TGG 0.575010 4_1:-10877307 Msa0535060:three_prime_UTR
GAGGTATGTTGTGTTCATCC+TGG 0.578040 4_1:-10877699 Msa0535060:CDS
GTTCATGCTAGAGGGGACAT+GGG 0.595900 4_1:-10877576 Msa0535060:CDS
GCTTCCAAATGCTCATAGGT+AGG 0.608016 4_1:+10877124 None:intergenic
TTGTAACGAATGTGTTCGAG+AGG 0.614427 4_1:-10877497 Msa0535060:CDS
TTTCTGTCAGGGACACGACA+GGG 0.615152 4_1:-10877972 Msa0535060:intron
CATTAAAGTTCATGCTAGAG+GGG 0.624713 4_1:-10877583 Msa0535060:CDS
ATGAAGTGCCTCCAGCCACA+GGG 0.630568 4_1:-10877269 Msa0535060:three_prime_UTR
ACGAAAGGAGGAAGATGGGG+AGG 0.630749 4_1:-10877525 Msa0535060:CDS
AAAACGAAAGGAGGAAGATG+GGG 0.635971 4_1:-10877528 Msa0535060:CDS
TGTGTTCATCCTGGCATGAA+AGG 0.643547 4_1:-10877690 Msa0535060:CDS
TTCATGCTAGAGGGGACATG+GGG 0.651188 4_1:-10877575 Msa0535060:CDS
AATTTGGAGAAACCTTGTAA+CGG 0.658112 4_1:+10879750 None:intergenic
TCGAGAGGATCAATGGCGAG+TGG 0.664074 4_1:-10877482 Msa0535060:CDS
GCTACAGCATGCAATTGCTG+AGG 0.668140 4_1:-10877874 Msa0535060:CDS
GGAGAGCATGTTGAGCAGTG+AGG 0.712787 4_1:-10877931 Msa0535060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATATATAACAATAATT+TGG + chr4_1:10877387-10877406 None:intergenic 10.0%
!! ATTATTGTTATATATGAATA+TGG - chr4_1:10877388-10877407 Msa0535060:three_prime_UTR 10.0%
!! TTATTGTTATATATGAATAT+GGG - chr4_1:10877389-10877408 Msa0535060:three_prime_UTR 10.0%
!! AAATAAGAATCAATTATATT+TGG + chr4_1:10877786-10877805 None:intergenic 10.0%
!!! TGCAATTTTTAATATTTGTT+GGG - chr4_1:10877250-10877269 Msa0535060:three_prime_UTR 15.0%
!!! AATTCTCTTTTAAGTTTTAA+GGG - chr4_1:10878041-10878060 Msa0535060:intron 15.0%
!! AATATACAGAAAAAATTTCT+AGG + chr4_1:10879615-10879634 None:intergenic 15.0%
!!! TATTGATTTTGTTTACAAAG+TGG + chr4_1:10877158-10877177 None:intergenic 20.0%
!! AAATTGCAGAAAAAAGAATT+TGG + chr4_1:10877238-10877257 None:intergenic 20.0%
!!! CTGCAATTTTTAATATTTGT+TGG - chr4_1:10877249-10877268 Msa0535060:three_prime_UTR 20.0%
!! CAATAATTTGGAAAAGTAAA+AGG + chr4_1:10877375-10877394 None:intergenic 20.0%
!!! ATTAAGTTGTTTATTCAAAC+AGG - chr4_1:10877616-10877635 Msa0535060:CDS 20.0%
!!! TTAAGTTGTTTATTCAAACA+GGG - chr4_1:10877617-10877636 Msa0535060:CDS 20.0%
!!! GAATTCTCTTTTAAGTTTTA+AGG - chr4_1:10878040-10878059 Msa0535060:intron 20.0%
!!! TTTGATTTAACTACTTGAAA+TGG - chr4_1:10878145-10878164 Msa0535060:intron 20.0%
!! TACATAGAATTTCAATTGAA+TGG - chr4_1:10878213-10878232 Msa0535060:intron 20.0%
!!! AATTTTGTGTTTTTTCATGA+AGG - chr4_1:10878383-10878402 Msa0535060:intron 20.0%
!!! ATTTTGTGTTTTTTCATGAA+GGG - chr4_1:10878384-10878403 Msa0535060:intron 20.0%
!! TAACTTTATAAAATTGCCAT+TGG - chr4_1:10878974-10878993 Msa0535060:intron 20.0%
!! AAATTGTTAAAATGAGTAAG+AGG + chr4_1:10879584-10879603 None:intergenic 20.0%
!!! TCATTTTAACAATTTTGTTG+TGG - chr4_1:10879589-10879608 Msa0535060:intron 20.0%
!! TATTCTTCAATTTTGTTCCT+AGG - chr4_1:10877314-10877333 Msa0535060:three_prime_UTR 25.0%
! TAGGTATAAAACTCTCAAAA+GGG - chr4_1:10877333-10877352 Msa0535060:three_prime_UTR 25.0%
!! GCAATTTTCATAAGCTATAT+TGG + chr4_1:10877487-10877506 None:intergenic 25.0%
! CAGCTTATAACATTACAAAA+GGG + chr4_1:10877593-10877612 None:intergenic 25.0%
! AAATTTACAACAACCGAAAA+AGG + chr4_1:10877917-10877936 None:intergenic 25.0%
!!! TAAGTGTAATTCTGAAACAA+GGG + chr4_1:10878000-10878019 None:intergenic 25.0%
!!! ATAAGTGTAATTCTGAAACA+AGG + chr4_1:10878001-10878020 None:intergenic 25.0%
! ATCTATCGAATTCAGAATTT+CGG - chr4_1:10878109-10878128 Msa0535060:intron 25.0%
! AACTACTTGAAATGGAAATT+TGG - chr4_1:10878153-10878172 Msa0535060:intron 25.0%
! TAGAATTTCAATTGAATGGT+TGG - chr4_1:10878217-10878236 Msa0535060:intron 25.0%
! CTTCAGTGAAATTCATAAAA+AGG + chr4_1:10878254-10878273 None:intergenic 25.0%
!!! CGATATGTTTTTCTTTTTCA+AGG - chr4_1:10878311-10878330 Msa0535060:intron 25.0%
!! AATTTAAAAATTTGCTCACG+TGG - chr4_1:10878348-10878367 Msa0535060:intron 25.0%
! AGCTAACTTATTTGGATTAA+AGG + chr4_1:10878496-10878515 None:intergenic 25.0%
!!! AATCCAAATAAGTTAGCTTT+TGG - chr4_1:10878498-10878517 Msa0535060:CDS 25.0%
! AGTACCAATAAGAATCAAAA+GGG + chr4_1:10878618-10878637 None:intergenic 25.0%
! TAGTACCAATAAGAATCAAA+AGG + chr4_1:10878619-10878638 None:intergenic 25.0%
!!! TTCTTATTGGTACTACTTTT+TGG - chr4_1:10878624-10878643 Msa0535060:intron 25.0%
! ATCAAGACTATAGAAAGAAA+TGG + chr4_1:10878697-10878716 None:intergenic 25.0%
! ATAGTTAGTACAGAAAACTT+AGG + chr4_1:10878754-10878773 None:intergenic 25.0%
! TTTGTACTAAATAGTGTATC+GGG + chr4_1:10878866-10878885 None:intergenic 25.0%
! CTTTGTACTAAATAGTGTAT+CGG + chr4_1:10878867-10878886 None:intergenic 25.0%
!!! TACAAAGTACTGTCAAATAA+CGG - chr4_1:10878880-10878899 Msa0535060:intron 25.0%
! ATTAGATGAAAACACTTTAG+AGG - chr4_1:10879068-10879087 Msa0535060:five_prime_UTR 25.0%
!! TTTTATGATTCATTCAGGAA+TGG - chr4_1:10879207-10879226 Msa0535060:intron 25.0%
!!! TCTTCTAGTTTGATTTGTAA+TGG + chr4_1:10879366-10879385 None:intergenic 25.0%
! ATGGAATTTGTAAAAACGAA+AGG - chr4_1:10879429-10879448 Msa0535060:intron 25.0%
! ATGTATCAATTCATATCTAC+TGG + chr4_1:10879537-10879556 None:intergenic 25.0%
! CTTTCTCTTTGTTTCATCAA+TGG - chr4_1:10877129-10877148 Msa0535060:three_prime_UTR 30.0%
AATTTGGAGAAACCTTGTAA+CGG + chr4_1:10877222-10877241 None:intergenic 30.0%
!! CTTTTGAGAGTTTTATACCT+AGG + chr4_1:10877334-10877353 None:intergenic 30.0%
CTAGGTATAAAACTCTCAAA+AGG - chr4_1:10877332-10877351 Msa0535060:three_prime_UTR 30.0%
GCAGCTTATAACATTACAAA+AGG + chr4_1:10877594-10877613 None:intergenic 30.0%
TGATCCTACTCAATCAATAT+TGG + chr4_1:10877643-10877662 None:intergenic 30.0%
TCAGAATAAGAATCCTTATC+TGG - chr4_1:10877868-10877887 Msa0535060:CDS 30.0%
! TGAACTAGCATTTTCAACTA+TGG - chr4_1:10877937-10877956 Msa0535060:CDS 30.0%
TTTCTGCAAAATTATCGCTT+AGG - chr4_1:10878064-10878083 Msa0535060:intron 30.0%
TCTATCGAATTCAGAATTTC+GGG - chr4_1:10878110-10878129 Msa0535060:intron 30.0%
CTTGAAATGGAAATTTGGAA+TGG - chr4_1:10878158-10878177 Msa0535060:intron 30.0%
GTAAAAAAAAATCCAACTCC+CGG + chr4_1:10878196-10878215 None:intergenic 30.0%
TTGCCAAAAGCTAACTTATT+TGG + chr4_1:10878504-10878523 None:intergenic 30.0%
!!! TTTGGCAAAAGTTTTGAAAG+AGG - chr4_1:10878516-10878535 Msa0535060:CDS 30.0%
GTCCTATTATATTTGCATCT+AGG - chr4_1:10878726-10878745 Msa0535060:intron 30.0%
AGCCTAGATGCAAATATAAT+AGG + chr4_1:10878731-10878750 None:intergenic 30.0%
! TTATAAGTGTCGTCAAATAG+CGG - chr4_1:10878797-10878816 Msa0535060:intron 30.0%
TTGTTAATTGCGAAGAATAG+AGG + chr4_1:10878951-10878970 None:intergenic 30.0%
!! GCAAGTTTTATGATTCATTC+AGG - chr4_1:10879202-10879221 Msa0535060:intron 30.0%
ACATTAAAGTTCATGCTAGA+GGG - chr4_1:10879385-10879404 Msa0535060:intron 30.0%
GAATTTGTAAAAACGAAAGG+AGG - chr4_1:10879432-10879451 Msa0535060:intron 30.0%
ATCGATGAGATTACTGAAAA+TGG + chr4_1:10879798-10879817 None:intergenic 30.0%
! TGAACAAAAAGCACACTATG+TGG - chr4_1:10877080-10877099 Msa0535060:three_prime_UTR 35.0%
! GAACAAAAAGCACACTATGT+GGG - chr4_1:10877081-10877100 Msa0535060:three_prime_UTR 35.0%
!! AAAAAGCGCAGTGCAAATTT+TGG + chr4_1:10877186-10877205 None:intergenic 35.0%
CTGAACATAAACACCAGATA+AGG + chr4_1:10877884-10877903 None:intergenic 35.0%
AAGAAGTCTCACTTCATGAA+TGG - chr4_1:10878271-10878290 Msa0535060:intron 35.0%
TCATGAATGGTTGAGGAATA+AGG - chr4_1:10878284-10878303 Msa0535060:intron 35.0%
ATCTTCTCATTTGCAACTTG+AGG + chr4_1:10878572-10878591 None:intergenic 35.0%
!! CGAACCCTTTTGATTCTTAT+TGG - chr4_1:10878611-10878630 Msa0535060:intron 35.0%
ATAGTGTATCGGGATAATAG+TGG + chr4_1:10878856-10878875 None:intergenic 35.0%
ATGCTAAAGCAGCAGAAATA+AGG - chr4_1:10879124-10879143 Msa0535060:intron 35.0%
TGCTAAAGCAGCAGAAATAA+GGG - chr4_1:10879125-10879144 Msa0535060:intron 35.0%
!! CTGTGTTGCTATCTTTTTGT+AGG + chr4_1:10879164-10879183 None:intergenic 35.0%
CTCAATAACATCATCATAGC+CGG + chr4_1:10879310-10879329 None:intergenic 35.0%
! ATGATGATGTTATTGAGAGC+TGG - chr4_1:10879313-10879332 Msa0535060:intron 35.0%
! TGATGATGTTATTGAGAGCT+GGG - chr4_1:10879314-10879333 Msa0535060:intron 35.0%
GACATTAAAGTTCATGCTAG+AGG - chr4_1:10879384-10879403 Msa0535060:intron 35.0%
CATTAAAGTTCATGCTAGAG+GGG - chr4_1:10879386-10879405 Msa0535060:intron 35.0%
TAAAAACGAAAGGAGGAAGA+TGG - chr4_1:10879439-10879458 Msa0535060:intron 35.0%
AAAAACGAAAGGAGGAAGAT+GGG - chr4_1:10879440-10879459 Msa0535060:intron 35.0%
!! TCTTTAGAAGCTTTGAGATG+TGG - chr4_1:10879662-10879681 Msa0535060:intron 35.0%
!! AGCTTTGAGATGTGGATTAA+TGG - chr4_1:10879670-10879689 Msa0535060:intron 35.0%
GGAAAAACATGTTCATGGTT+AGG - chr4_1:10879721-10879740 Msa0535060:intron 35.0%
!! GTTCATGGTTAGGTTTTATG+TGG - chr4_1:10879731-10879750 Msa0535060:intron 35.0%
!! CAGTCTTATTGCACATAACA+TGG - chr4_1:10879870-10879889 Msa0535060:five_prime_UTR 35.0%
! GATTTTCCTCTTCCGTTACA+AGG - chr4_1:10877207-10877226 Msa0535060:three_prime_UTR 40.0%
! AGGGCCAATATTGATTGAGT+AGG - chr4_1:10877636-10877655 Msa0535060:CDS 40.0%
GTACACAGCAATGCAATTTC+AGG - chr4_1:10877808-10877827 Msa0535060:CDS 40.0%
! AGCAATGCAATTTCAGGTGA+AGG - chr4_1:10877814-10877833 Msa0535060:CDS 40.0%
GGAATGGTTTATAACTCCTC+CGG - chr4_1:10878174-10878193 Msa0535060:intron 40.0%
GAATGGTTTATAACTCCTCC+GGG - chr4_1:10878175-10878194 Msa0535060:intron 40.0%
AAAAAAAATCCAACTCCCGG+AGG + chr4_1:10878193-10878212 None:intergenic 40.0%
TCTCACTTCATGAATGGTTG+AGG - chr4_1:10878277-10878296 Msa0535060:intron 40.0%
! AAATTTGCTCACGTGGTTCA+TGG - chr4_1:10878355-10878374 Msa0535060:intron 40.0%
GGGACTTTATTCTACTCTCA+AGG - chr4_1:10878404-10878423 Msa0535060:CDS 40.0%
!! TGCAACTTGAGGCATTGATT+AGG + chr4_1:10878561-10878580 None:intergenic 40.0%
AATCAAAAGGGTTCGAGCAA+AGG + chr4_1:10878606-10878625 None:intergenic 40.0%
!! AATTGCCATTGGTTTCTGTC+AGG - chr4_1:10878985-10879004 Msa0535060:intron 40.0%
!! ATTGCCATTGGTTTCTGTCA+GGG - chr4_1:10878986-10879005 Msa0535060:intron 40.0%
GATAGCAACACAGCAGTATT+TGG - chr4_1:10879171-10879190 Msa0535060:intron 40.0%
AAAACGAAAGGAGGAAGATG+GGG - chr4_1:10879441-10879460 Msa0535060:intron 40.0%
TTGTAACGAATGTGTTCGAG+AGG - chr4_1:10879472-10879491 Msa0535060:intron 40.0%
AATGTGTTCGAGAGGATCAA+TGG - chr4_1:10879480-10879499 Msa0535060:intron 40.0%
! CATGAACATGTTTTTCCCTG+TGG + chr4_1:10879718-10879737 None:intergenic 40.0%
CACAGGGAAAAACATGTTCA+TGG - chr4_1:10879716-10879735 Msa0535060:intron 40.0%
! GAGAAACCTTGTAACGGAAG+AGG + chr4_1:10877216-10877235 None:intergenic 45.0%
TTTATAACTCCTCCGGGAGT+TGG - chr4_1:10878181-10878200 Msa0535060:intron 45.0%
CAAGGAGTTCAGTTTCTTGC+CGG - chr4_1:10878422-10878441 Msa0535060:CDS 45.0%
AAGGAGTTCAGTTTCTTGCC+GGG - chr4_1:10878423-10878442 Msa0535060:CDS 45.0%
! AAGCTATTGATGACCGAACC+CGG + chr4_1:10878444-10878463 None:intergenic 45.0%
ATTTCGCTATGCTACAGTGC+TGG + chr4_1:10878919-10878938 None:intergenic 45.0%
GGGTGTAAAAAGTGAAGACG+CGG - chr4_1:10879017-10879036 Msa0535060:exon 45.0%
GAGGTATGTTGTGTTCATCC+TGG - chr4_1:10879270-10879289 Msa0535060:intron 45.0%
TGTGTTCATCCTGGCATGAA+AGG - chr4_1:10879279-10879298 Msa0535060:intron 45.0%
CCTGGCATGAAAGGAATATC+CGG - chr4_1:10879288-10879307 Msa0535060:intron 45.0%
TTGAGAGCTGGGATTTCGTA+TGG - chr4_1:10879325-10879344 Msa0535060:intron 45.0%
TGAGAGCTGGGATTTCGTAT+GGG - chr4_1:10879326-10879345 Msa0535060:intron 45.0%
! AACATGTTTTTCCCTGTGGC+TGG + chr4_1:10879714-10879733 None:intergenic 45.0%
TGCACCTACCTATGAGCATT+TGG - chr4_1:10879841-10879860 Msa0535060:five_prime_UTR 45.0%
GCTTCCAAATGCTCATAGGT+AGG + chr4_1:10879848-10879867 None:intergenic 45.0%
! TGCTGCTTCCAAATGCTCAT+AGG + chr4_1:10879852-10879871 None:intergenic 45.0%
! CAGCTGATGCGAGCCTTTTT+CGG - chr4_1:10877901-10877920 Msa0535060:CDS 50.0%
GTTCAGTTTCTTGCCGGGTT+CGG - chr4_1:10878428-10878447 Msa0535060:CDS 50.0%
GTGTCCCTGACAGAAACCAA+TGG + chr4_1:10878993-10879012 None:intergenic 50.0%
TTTCTGTCAGGGACACGACA+GGG - chr4_1:10878997-10879016 Msa0535060:intron 50.0%
GCTACAGCATGCAATTGCTG+AGG - chr4_1:10879095-10879114 Msa0535060:five_prime_UTR 50.0%
! TTTTGCCCACATGCCTTGCA+TGG + chr4_1:10879244-10879263 None:intergenic 50.0%
GCAAGGCATGTGGGCAAAAA+CGG - chr4_1:10879245-10879264 Msa0535060:intron 50.0%
CCGGATATTCCTTTCATGCC+AGG + chr4_1:10879291-10879310 None:intergenic 50.0%
AGTTCATGCTAGAGGGGACA+TGG - chr4_1:10879392-10879411 Msa0535060:intron 50.0%
GTTCATGCTAGAGGGGACAT+GGG - chr4_1:10879393-10879412 Msa0535060:intron 50.0%
TTCATGCTAGAGGGGACATG+GGG - chr4_1:10879394-10879413 Msa0535060:intron 50.0%
CATGGGGTACGTTACATGCA+TGG - chr4_1:10879410-10879429 Msa0535060:intron 50.0%
! ATGTTTTTCCCTGTGGCTGG+AGG + chr4_1:10879711-10879730 None:intergenic 50.0%
GTTTCTGTCAGGGACACGAC+AGG - chr4_1:10878996-10879015 Msa0535060:intron 55.0%
! GGAGAGCATGTTGAGCAGTG+AGG - chr4_1:10879038-10879057 Msa0535060:five_prime_UTR 55.0%
ACATGCCTTGCATGGCTGCA+AGG + chr4_1:10879236-10879255 None:intergenic 55.0%
TTGCAGCCATGCAAGGCATG+TGG - chr4_1:10879235-10879254 Msa0535060:intron 55.0%
TGCAGCCATGCAAGGCATGT+GGG - chr4_1:10879236-10879255 Msa0535060:intron 55.0%
CATGTGGGCAAAAACGGACG+AGG - chr4_1:10879251-10879270 Msa0535060:intron 55.0%
ACGAAAGGAGGAAGATGGGG+AGG - chr4_1:10879444-10879463 Msa0535060:intron 55.0%
TCGAGAGGATCAATGGCGAG+TGG - chr4_1:10879487-10879506 Msa0535060:intron 55.0%
! ATGAAGTGCCTCCAGCCACA+GGG - chr4_1:10879700-10879719 Msa0535060:intron 55.0%
! GATGAAGTGCCTCCAGCCAC+AGG - chr4_1:10879699-10879718 Msa0535060:intron 60.0%
GGCGACCTTGCAGCCATGCA+AGG - chr4_1:10879228-10879247 Msa0535060:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 10877074 10879917 10877074 ID=Msa0535060;Name=Msa0535060
chr4_1 mRNA 10877074 10879917 10877074 ID=Msa0535060-mRNA-1;Parent=Msa0535060;Name=Msa0535060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=239|1|1|1|0.66|0.5|4|366|255
chr4_1 exon 10877074 10877984 10877074 ID=Msa0535060-mRNA-1:exon:3504;Parent=Msa0535060-mRNA-1
chr4_1 exon 10878397 10878586 10878397 ID=Msa0535060-mRNA-1:exon:3503;Parent=Msa0535060-mRNA-1
chr4_1 exon 10879003 10879119 10879003 ID=Msa0535060-mRNA-1:exon:3502;Parent=Msa0535060-mRNA-1
chr4_1 exon 10879763 10879917 10879763 ID=Msa0535060-mRNA-1:exon:3501;Parent=Msa0535060-mRNA-1
chr4_1 five_prime_UTR 10879763 10879917 10879763 ID=Msa0535060-mRNA-1:five_prime_utr;Parent=Msa0535060-mRNA-1
chr4_1 five_prime_UTR 10879036 10879119 10879036 ID=Msa0535060-mRNA-1:five_prime_utr;Parent=Msa0535060-mRNA-1
chr4_1 CDS 10879003 10879035 10879003 ID=Msa0535060-mRNA-1:cds;Parent=Msa0535060-mRNA-1
chr4_1 CDS 10878397 10878586 10878397 ID=Msa0535060-mRNA-1:cds;Parent=Msa0535060-mRNA-1
chr4_1 CDS 10877440 10877984 10877440 ID=Msa0535060-mRNA-1:cds;Parent=Msa0535060-mRNA-1
chr4_1 three_prime_UTR 10877074 10877439 10877074 ID=Msa0535060-mRNA-1:three_prime_utr;Parent=Msa0535060-mRNA-1
Gene Sequence

>Msa0535060

ATGGCGCTTTATGCAACTGCGTTATCGTTCAACGGACTTTATTCTACTCTCAAGGAGTTCAGTTTCTTGCCGGGTTCGGTCATCAATAGCTTTCACAAGCGACATGATGTTTGTCTGCAATCCTTTAATCCAAATAAGTTAGCTTTTGGCAAAAGTTTTGAAAGAGGAGACGAACTGTGTTTGTTGCCTAATCAATGCCTCAAGTTGCAAATGAGAAGATTCAGGACACGACAGGGTGTAAAAAGTGAAGACGCGGAGAGCATGTTGAGCAGTGAGGACATTGCATTAGATGAAAACACTTTAGAGGAAGAGCTACAGCATGCAATTGCTGAGGAGAATTATGCTAAAGCAGCAGAAATAAGGGATACACTAAAAAACCTACAAAAAGATAGCAACACAGCAGTATTTGGAGCAAACAGCAAGTTTTATGATTCATTCAGGAATGGCGACCTTGCAGCCATGCAAGGCATGTGGGCAAAAACGGACGAGGTATGTTGTGTTCATCCTGGCATGAAAGGAATATCCGGCTATGATGATGTTATTGAGAGCTGGGATTTCGTATGGGCTAACTATGAATTTCCATTACAAATCAAACTAGAAGACATTAAAGTTCATGCTAGAGGGGACATGGGGTACGTTACATGCATGGAATTTGTAAAAACGAAAGGAGGAAGATGGGGAGGACAATTTGTAACGAATGTGTTCGAGAGGATCAATGGCGAGTGGTTTATTTGTAATCATCATGCTTCACCAGTAGATATGAATTGA

Protein sequence

>Msa0535060

MALYATALSFNGLYSTLKEFSFLPGSVINSFHKRHDVCLQSFNPNKLAFGKSFERGDELCLLPNQCLKLQMRRFRTRQGVKSEDAESMLSSEDIALDENTLEEELQHAIAEENYAKAAEIRDTLKNLQKDSNTAVFGANSKFYDSFRNGDLAAMQGMWAKTDEVCCVHPGMKGISGYDDVIESWDFVWANYEFPLQIKLEDIKVHARGDMGYVTCMEFVKTKGGRWGGQFVTNVFERINGEWFICNHHASPVDMN*