AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0669850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669850 MtrunA17_Chr4g0008871 98.431 255 4 0 1 255 1 255 0.0 529
Msa0669850 MtrunA17_Chr8g0388401 25.610 246 152 6 5 250 57 271 2.05e-18 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669850 AT3G09250.3 61.140 193 69 3 67 254 39 230 9.71e-85 253
Msa0669850 AT3G09250.1 61.140 193 69 3 67 254 53 244 1.48e-84 253
Msa0669850 AT3G09250.2 59.341 182 68 3 67 243 39 219 3.19e-75 229
Msa0669850 AT4G10925.3 31.667 120 78 2 131 250 104 219 5.56e-17 77.8
Msa0669850 AT4G10925.2 31.667 120 78 2 131 250 104 219 5.56e-17 77.8
Msa0669850 AT4G10925.4 31.667 120 78 2 131 250 104 219 5.56e-17 77.8
Msa0669850 AT4G10925.5 31.667 120 78 2 131 250 104 219 5.56e-17 77.8
Msa0669850 AT4G10925.1 31.667 120 78 2 131 250 104 219 5.56e-17 77.8
Msa0669850 AT4G23960.2 29.839 124 76 3 135 255 73 188 6.13e-12 63.2

Find 63 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTAACTTATTTGGATTAA+AGG 0.134555 4_4:+11720443 None:intergenic
TTGCCAAAAGCTAACTTATT+TGG 0.143563 4_4:+11720435 None:intergenic
ATCGATGAGATTACTGAAAA+TGG 0.205967 4_4:+11719140 None:intergenic
ATGCTAAAGCAGCAGAAATA+AGG 0.234285 4_4:-11719811 Msa0669850:CDS
AGCTTTGAGATGTGGATTAA+TGG 0.250409 4_4:-11719265 Msa0669850:three_prime_UTR
GATAGCAACACAGCAGTATT+TGG 0.251611 4_4:-11719764 Msa0669850:CDS
AATCCAAATAAGTTAGCTTT+TGG 0.283724 4_4:-11720438 Msa0669850:CDS
CAAGGAGTTCAGTTTCTTGC+CGG 0.285437 4_4:-11720514 Msa0669850:CDS
AAATTTACAACAACCGAAAA+AGG 0.288813 4_4:+11721022 None:intergenic
TAAGTCTTCTCTTTCTCTAA+TGG 0.291754 4_4:-11721889 Msa0669850:five_prime_UTR
TCAGAATAAGAATCCTTATC+TGG 0.310991 4_4:-11721068 Msa0669850:intron
ATTAGATGAAAACACTTTAG+AGG 0.343894 4_4:-11719867 Msa0669850:CDS
TCTTCTAGTTTGATTTGTAA+TGG 0.367473 4_4:+11719572 None:intergenic
GTTCAGTTTCTTGCCGGGTT+CGG 0.410478 4_4:-11720508 Msa0669850:CDS
TTGAGAGCTGGGATTTCGTA+TGG 0.419032 4_4:-11719610 Msa0669850:CDS
TGCTAAAGCAGCAGAAATAA+GGG 0.421596 4_4:-11719810 Msa0669850:CDS
TGCACCTACCTATGAGCATT+TGG 0.423056 4_4:-11719094 Msa0669850:three_prime_UTR
TGCAACTTGAGGCATTGATT+AGG 0.431017 4_4:+11720378 None:intergenic
CCGGATATTCCTTTCATACC+AGG 0.479450 4_4:+11719647 None:intergenic
ATCTTCTCATTTGCAACTTG+AGG 0.480992 4_4:+11720367 None:intergenic
ATGTATCAATTCATATCTAC+TGG 0.481405 4_4:+11719401 None:intergenic
CCTGGTATGAAAGGAATATC+CGG 0.485068 4_4:-11719647 Msa0669850:CDS
AAATTGTTAAAATGAGTAAG+AGG 0.486196 4_4:+11719354 None:intergenic
TGCTGCTTCCAAATGCTCAT+AGG 0.486319 4_4:+11719086 None:intergenic
AATGTGTTCGAGAGGATCAA+TGG 0.487074 4_4:-11719455 Msa0669850:CDS
CTCAATAACATCATCATAGC+CGG 0.487596 4_4:+11719628 None:intergenic
GATGAAGTGCCTCCAGCCAC+AGG 0.493851 4_4:-11719236 Msa0669850:three_prime_UTR
GGCGACCTTGCAGCCATGCA+AGG 0.495354 4_4:-11719707 Msa0669850:CDS
ATGATGATGTTATTGAGAGC+TGG 0.502409 4_4:-11719622 Msa0669850:CDS
AAGGAGTTCAGTTTCTTGCC+GGG 0.510954 4_4:-11720513 Msa0669850:CDS
CTGAACATAAACACCAGATA+AGG 0.511267 4_4:+11721055 None:intergenic
ACATGCCTTGCATGGCTGCA+AGG 0.515179 4_4:+11719702 None:intergenic
GAGAAACCTTGTAACGGAAG+AGG 0.516416 4_4:+11721805 None:intergenic
GTTTCTGTCAGGGACACGAC+AGG 0.525904 4_4:-11719939 Msa0669850:intron
AGTTCATGCTAGAGGGGACA+TGG 0.526900 4_4:-11719543 Msa0669850:CDS
GACATTAAAGTTCATGCTAG+AGG 0.527041 4_4:-11719551 Msa0669850:CDS
CAGTCTTATTGCACATAACA+TGG 0.528861 4_4:-11719065 Msa0669850:three_prime_UTR
GGGACTTTCTTCTACTCTCA+AGG 0.531322 4_4:-11720532 Msa0669850:CDS
TTGCAGCCATGCAAGGCATG+TGG 0.533455 4_4:-11719700 Msa0669850:CDS
TGATGATGTTATTGAGAGCT+GGG 0.533980 4_4:-11719621 Msa0669850:CDS
TGTTGATCTTGTTTACAAAG+TGG 0.538007 4_4:+11721863 None:intergenic
ACATTAAAGTTCATGCTAGA+GGG 0.562565 4_4:-11719550 Msa0669850:CDS
AAGCTATTGATGACCGAACC+CGG 0.564308 4_4:+11720495 None:intergenic
TGCAGCCATGCAAGGCATGT+GGG 0.568080 4_4:-11719699 Msa0669850:CDS
TGAGAGCTGGGATTTCGTAT+GGG 0.571314 4_4:-11719609 Msa0669850:CDS
TCTTTAGAAGCTTTGAGATG+TGG 0.575010 4_4:-11719273 Msa0669850:three_prime_UTR
GAGGTATGTTGTGTTCATCC+TGG 0.582448 4_4:-11719665 Msa0669850:CDS
GTTAAAATGAGTAAGAGGAA+AGG 0.593250 4_4:+11719359 None:intergenic
CATGGGGTATGTTACATGCA+TGG 0.595261 4_4:-11719525 Msa0669850:CDS
GTTCATGCTAGAGGGGACAT+GGG 0.595900 4_4:-11719542 Msa0669850:CDS
GCTTCCAAATGCTCATAGGT+AGG 0.608016 4_4:+11719090 None:intergenic
TTGTAACGAATGTGTTCGAG+AGG 0.614427 4_4:-11719463 Msa0669850:CDS
TTTCTGTCAGGGACACGACA+GGG 0.615152 4_4:-11719938 Msa0669850:intron
CATTAAAGTTCATGCTAGAG+GGG 0.624713 4_4:-11719549 Msa0669850:CDS
TGTGTTCATCCTGGTATGAA+AGG 0.628945 4_4:-11719656 Msa0669850:CDS
ATGAAGTGCCTCCAGCCACA+GGG 0.630568 4_4:-11719235 Msa0669850:three_prime_UTR
ACGAAAGGAGGAAGATGGGG+AGG 0.630749 4_4:-11719491 Msa0669850:CDS
AAAACGAAAGGAGGAAGATG+GGG 0.635971 4_4:-11719494 Msa0669850:CDS
TTCATGCTAGAGGGGACATG+GGG 0.652035 4_4:-11719541 Msa0669850:CDS
AATTTGGAGAAACCTTGTAA+CGG 0.658112 4_4:+11721799 None:intergenic
TCGAGAGGATCAATGGCGAG+TGG 0.664074 4_4:-11719448 Msa0669850:CDS
GCTACAGCATGCAATTGCTG+AGG 0.668140 4_4:-11719840 Msa0669850:CDS
GGAGAGCATGTTGAGCAGTG+AGG 0.712787 4_4:-11719897 Msa0669850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATATATAACAATAATT+TGG + chr4_4:11719340-11719359 None:intergenic 10.0%
!! ATTATTGTTATATATGAATA+TGG - chr4_4:11719341-11719360 Msa0669850:three_prime_UTR 10.0%
!! TTATTGTTATATATGAATAT+GGG - chr4_4:11719342-11719361 Msa0669850:three_prime_UTR 10.0%
!! AAATAAGAATCAATTATATT+TGG + chr4_4:11719821-11719840 None:intergenic 10.0%
!!! TGCAATTTTTAATATTTGTT+GGG - chr4_4:11719203-11719222 Msa0669850:three_prime_UTR 15.0%
!!! AATTCTCTTTTAAGTTTTAA+GGG - chr4_4:11720076-11720095 Msa0669850:intron 15.0%
!! AATATACAGAAAAAATTTCT+AGG + chr4_4:11721651-11721670 None:intergenic 15.0%
!! AAATTGCAGAAAAAAGAATT+TGG + chr4_4:11719191-11719210 None:intergenic 20.0%
!!! CTGCAATTTTTAATATTTGT+TGG - chr4_4:11719202-11719221 Msa0669850:three_prime_UTR 20.0%
!! CAATAATTTGGAAAAGTAAA+AGG + chr4_4:11719328-11719347 None:intergenic 20.0%
!! ATTTAGTTGTTTATTCAAAC+AGG - chr4_4:11719569-11719588 Msa0669850:CDS 20.0%
!! TTTAGTTGTTTATTCAAACA+GGG - chr4_4:11719570-11719589 Msa0669850:CDS 20.0%
!!! GAATTCTCTTTTAAGTTTTA+AGG - chr4_4:11720075-11720094 Msa0669850:intron 20.0%
!!! TTTGATTTAACTACTTGAAA+TGG - chr4_4:11720180-11720199 Msa0669850:intron 20.0%
!! TACATAGAATTTCAATTGAA+TGG - chr4_4:11720248-11720267 Msa0669850:intron 20.0%
!!! AATTTTGTGTTTTTTCATGA+AGG - chr4_4:11720418-11720437 Msa0669850:CDS 20.0%
!!! ATTTTGTGTTTTTTCATGAA+GGG - chr4_4:11720419-11720438 Msa0669850:CDS 20.0%
!! TAACTTTATAAAATTGCCAT+TGG - chr4_4:11721010-11721029 Msa0669850:five_prime_UTR 20.0%
!! AAATTGTTAAAATGAGTAAG+AGG + chr4_4:11721620-11721639 None:intergenic 20.0%
!!! TCATTTTAACAATTTTGTTG+TGG - chr4_4:11721625-11721644 Msa0669850:intron 20.0%
!! TATTCTTCAATTTTGTTCCT+AGG - chr4_4:11719267-11719286 Msa0669850:three_prime_UTR 25.0%
! TAGGTATAAAACTCTCAAAA+GGG - chr4_4:11719286-11719305 Msa0669850:three_prime_UTR 25.0%
!! GAAATTTTCATAAGCTATAC+TGG + chr4_4:11719440-11719459 None:intergenic 25.0%
! CAGCTTATAACATTACAAAA+GGG + chr4_4:11719546-11719565 None:intergenic 25.0%
!! GAATTTGATAATCTTTGTTC+TGG - chr4_4:11719674-11719693 Msa0669850:CDS 25.0%
! AAATTTACAACAACCGAAAA+AGG + chr4_4:11719952-11719971 None:intergenic 25.0%
!! TTTTCGGTTGTTGTAAATTT+TGG - chr4_4:11719952-11719971 Msa0669850:intron 25.0%
!!! TAAGTGTAATTCTGAAACAA+GGG + chr4_4:11720035-11720054 None:intergenic 25.0%
!!! ATAAGTGTAATTCTGAAACA+AGG + chr4_4:11720036-11720055 None:intergenic 25.0%
! ATCTATCGAATTCAGAATTT+CGG - chr4_4:11720144-11720163 Msa0669850:intron 25.0%
! AACTACTTGAAATGGAAATT+TGG - chr4_4:11720188-11720207 Msa0669850:intron 25.0%
! TAGAATTTCAATTGAATGGT+TGG - chr4_4:11720252-11720271 Msa0669850:intron 25.0%
! CTTCAGTGAAATTCATAAAA+AGG + chr4_4:11720289-11720308 None:intergenic 25.0%
! AAACTACATAATCCTTGAAA+AGG + chr4_4:11720361-11720380 None:intergenic 25.0%
! AGCTAACTTATTTGGATTAA+AGG + chr4_4:11720531-11720550 None:intergenic 25.0%
!!! AATCCAAATAAGTTAGCTTT+TGG - chr4_4:11720533-11720552 Msa0669850:CDS 25.0%
! AGTACCAATAAGAATCAAAA+GGG + chr4_4:11720653-11720672 None:intergenic 25.0%
! TAGTACCAATAAGAATCAAA+AGG + chr4_4:11720654-11720673 None:intergenic 25.0%
!!! TTCTTATTGGTACTACTTTT+TGG - chr4_4:11720659-11720678 Msa0669850:intron 25.0%
! ATCAAGACTATAGAAAGAAA+TGG + chr4_4:11720732-11720751 None:intergenic 25.0%
! TTTGTACTAAATAGTGTATC+GGG + chr4_4:11720901-11720920 None:intergenic 25.0%
! CTTTGTACTAAATAGTGTAT+CGG + chr4_4:11720902-11720921 None:intergenic 25.0%
!!! TACAAAGTACTGTCAAATAA+CGG - chr4_4:11720915-11720934 Msa0669850:intron 25.0%
! ATTAGATGAAAACACTTTAG+AGG - chr4_4:11721104-11721123 Msa0669850:intron 25.0%
!! TTTTATGATTCATTCAGGAA+TGG - chr4_4:11721243-11721262 Msa0669850:intron 25.0%
!!! TCTTCTAGTTTGATTTGTAA+TGG + chr4_4:11721402-11721421 None:intergenic 25.0%
! ATGGAATTTGTAAAAACGAA+AGG - chr4_4:11721465-11721484 Msa0669850:intron 25.0%
! ATGTATCAATTCATATCTAC+TGG + chr4_4:11721573-11721592 None:intergenic 25.0%
ATGACAAAAAGCAAACTATG+TGG - chr4_4:11719047-11719066 Msa0669850:three_prime_UTR 30.0%
TGACAAAAAGCAAACTATGT+GGG - chr4_4:11719048-11719067 Msa0669850:three_prime_UTR 30.0%
TAAGTCTTCTCTTTCTCTAA+TGG - chr4_4:11719082-11719101 Msa0669850:three_prime_UTR 30.0%
! TGTTGATCTTGTTTACAAAG+TGG + chr4_4:11719111-11719130 None:intergenic 30.0%
AATTTGGAGAAACCTTGTAA+CGG + chr4_4:11719175-11719194 None:intergenic 30.0%
!! CTTTTGAGAGTTTTATACCT+AGG + chr4_4:11719287-11719306 None:intergenic 30.0%
CTAGGTATAAAACTCTCAAA+AGG - chr4_4:11719285-11719304 Msa0669850:three_prime_UTR 30.0%
! GAATATGGGTTTGTTTGAAT+TGG - chr4_4:11719356-11719375 Msa0669850:three_prime_UTR 30.0%
GCAGCTTATAACATTACAAA+AGG + chr4_4:11719547-11719566 None:intergenic 30.0%
TGATCCTACTCAATCAATAT+TGG + chr4_4:11719596-11719615 None:intergenic 30.0%
TCAGAATAAGAATCCTTATC+TGG - chr4_4:11719903-11719922 Msa0669850:CDS 30.0%
!!! TGGATTAGCATTTTCAACTA+TGG - chr4_4:11719972-11719991 Msa0669850:intron 30.0%
TTTCTGCAAAATTATCGCTT+AGG - chr4_4:11720099-11720118 Msa0669850:intron 30.0%
TCTATCGAATTCAGAATTTC+GGG - chr4_4:11720145-11720164 Msa0669850:intron 30.0%
CTTGAAATGGAAATTTGGAA+TGG - chr4_4:11720193-11720212 Msa0669850:intron 30.0%
GTAAAAAAAAATCCAACTCC+CGG + chr4_4:11720231-11720250 None:intergenic 30.0%
! CGATATGTTTTTCCTTTTCA+AGG - chr4_4:11720346-11720365 Msa0669850:intron 30.0%
! AATTTAAAAATTTGCTCGCG+TGG - chr4_4:11720383-11720402 Msa0669850:CDS 30.0%
TTGCCAAAAGCTAACTTATT+TGG + chr4_4:11720539-11720558 None:intergenic 30.0%
!!! TTTGGCAAAAGTTTTGAAAG+AGG - chr4_4:11720551-11720570 Msa0669850:intron 30.0%
GTCCTATTATATTTGCATCT+AGG - chr4_4:11720761-11720780 Msa0669850:intron 30.0%
AGCCTAGATGCAAATATAAT+AGG + chr4_4:11720766-11720785 None:intergenic 30.0%
GTAGTTAGTACAGAAAACTT+AGG + chr4_4:11720789-11720808 None:intergenic 30.0%
! TTATAAGTGTCGTCAAATAG+CGG - chr4_4:11720832-11720851 Msa0669850:intron 30.0%
TTGTTAATTGCGAAGAATAG+AGG + chr4_4:11720986-11721005 None:intergenic 30.0%
!! GCAAGTTTTATGATTCATTC+AGG - chr4_4:11721238-11721257 Msa0669850:intron 30.0%
ACATTAAAGTTCATGCTAGA+GGG - chr4_4:11721421-11721440 Msa0669850:intron 30.0%
GAATTTGTAAAAACGAAAGG+AGG - chr4_4:11721468-11721487 Msa0669850:intron 30.0%
GTTAAAATGAGTAAGAGGAA+AGG + chr4_4:11721615-11721634 None:intergenic 30.0%
ATCGATGAGATTACTGAAAA+TGG + chr4_4:11721834-11721853 None:intergenic 30.0%
!! AAAAAGCGCAGTGCAAATTT+TGG + chr4_4:11719139-11719158 None:intergenic 35.0%
! TCTTTGTTCTGGATGATTTG+AGG - chr4_4:11719685-11719704 Msa0669850:CDS 35.0%
CTGAACATAAACACCAGATA+AGG + chr4_4:11719919-11719938 None:intergenic 35.0%
AAGAAGTCTCACTTCATGAA+TGG - chr4_4:11720306-11720325 Msa0669850:intron 35.0%
TCATGAATGGTTGAGGAATA+AGG - chr4_4:11720319-11720338 Msa0669850:intron 35.0%
ATCTTCTCATTTGCAACTTG+AGG + chr4_4:11720607-11720626 None:intergenic 35.0%
!! CGAACCCTTTTGATTCTTAT+TGG - chr4_4:11720646-11720665 Msa0669850:intron 35.0%
ATAGTGTATCGGGATAATAG+TGG + chr4_4:11720891-11720910 None:intergenic 35.0%
ATGCTAAAGCAGCAGAAATA+AGG - chr4_4:11721160-11721179 Msa0669850:intron 35.0%
TGCTAAAGCAGCAGAAATAA+GGG - chr4_4:11721161-11721180 Msa0669850:intron 35.0%
!! CTGTGTTGCTATCTTTTTGT+AGG + chr4_4:11721200-11721219 None:intergenic 35.0%
CTCAATAACATCATCATAGC+CGG + chr4_4:11721346-11721365 None:intergenic 35.0%
! ATGATGATGTTATTGAGAGC+TGG - chr4_4:11721349-11721368 Msa0669850:intron 35.0%
! TGATGATGTTATTGAGAGCT+GGG - chr4_4:11721350-11721369 Msa0669850:intron 35.0%
GACATTAAAGTTCATGCTAG+AGG - chr4_4:11721420-11721439 Msa0669850:intron 35.0%
CATTAAAGTTCATGCTAGAG+GGG - chr4_4:11721422-11721441 Msa0669850:intron 35.0%
TAAAAACGAAAGGAGGAAGA+TGG - chr4_4:11721475-11721494 Msa0669850:intron 35.0%
AAAAACGAAAGGAGGAAGAT+GGG - chr4_4:11721476-11721495 Msa0669850:intron 35.0%
!! TCTTTAGAAGCTTTGAGATG+TGG - chr4_4:11721698-11721717 Msa0669850:intron 35.0%
!! AGCTTTGAGATGTGGATTAA+TGG - chr4_4:11721706-11721725 Msa0669850:intron 35.0%
GGAAAAACATGTTCATGGTT+AGG - chr4_4:11721757-11721776 Msa0669850:intron 35.0%
!! GTTCATGGTTAGGTTTTATG+TGG - chr4_4:11721767-11721786 Msa0669850:intron 35.0%
!! CAGTCTTATTGCACATAACA+TGG - chr4_4:11721906-11721925 Msa0669850:five_prime_UTR 35.0%
! GATTTTCCTCTTCCGTTACA+AGG - chr4_4:11719160-11719179 Msa0669850:three_prime_UTR 40.0%
! AGGGCCAATATTGATTGAGT+AGG - chr4_4:11719589-11719608 Msa0669850:CDS 40.0%
GTACACAGCAATGCAATTTC+AGG - chr4_4:11719843-11719862 Msa0669850:CDS 40.0%
! AGCAATGCAATTTCAGGTGA+AGG - chr4_4:11719849-11719868 Msa0669850:CDS 40.0%
GGAATGGTTTATAACTCCTC+CGG - chr4_4:11720209-11720228 Msa0669850:intron 40.0%
GAATGGTTTATAACTCCTCC+GGG - chr4_4:11720210-11720229 Msa0669850:intron 40.0%
AAAAAAAATCCAACTCCCGG+AGG + chr4_4:11720228-11720247 None:intergenic 40.0%
TCTCACTTCATGAATGGTTG+AGG - chr4_4:11720312-11720331 Msa0669850:intron 40.0%
!! TGCAACTTGAGGCATTGATT+AGG + chr4_4:11720596-11720615 None:intergenic 40.0%
AATCAAAAGGGTTCGAGCAA+AGG + chr4_4:11720641-11720660 None:intergenic 40.0%
!! AATTGCCATTGGTTTCTGTC+AGG - chr4_4:11721021-11721040 Msa0669850:five_prime_UTR 40.0%
!! ATTGCCATTGGTTTCTGTCA+GGG - chr4_4:11721022-11721041 Msa0669850:five_prime_UTR 40.0%
GATAGCAACACAGCAGTATT+TGG - chr4_4:11721207-11721226 Msa0669850:intron 40.0%
TGTGTTCATCCTGGTATGAA+AGG - chr4_4:11721315-11721334 Msa0669850:intron 40.0%
CCTGGTATGAAAGGAATATC+CGG - chr4_4:11721324-11721343 Msa0669850:intron 40.0%
AAAACGAAAGGAGGAAGATG+GGG - chr4_4:11721477-11721496 Msa0669850:intron 40.0%
TTGTAACGAATGTGTTCGAG+AGG - chr4_4:11721508-11721527 Msa0669850:intron 40.0%
AATGTGTTCGAGAGGATCAA+TGG - chr4_4:11721516-11721535 Msa0669850:intron 40.0%
! CATGAACATGTTTTTCCCTG+TGG + chr4_4:11721754-11721773 None:intergenic 40.0%
CACAGGGAAAAACATGTTCA+TGG - chr4_4:11721752-11721771 Msa0669850:intron 40.0%
! GAGAAACCTTGTAACGGAAG+AGG + chr4_4:11719169-11719188 None:intergenic 45.0%
TTTATAACTCCTCCGGGAGT+TGG - chr4_4:11720216-11720235 Msa0669850:intron 45.0%
! AAATTTGCTCGCGTGGTTCA+TGG - chr4_4:11720390-11720409 Msa0669850:CDS 45.0%
GGGACTTTCTTCTACTCTCA+AGG - chr4_4:11720439-11720458 Msa0669850:CDS 45.0%
CAAGGAGTTCAGTTTCTTGC+CGG - chr4_4:11720457-11720476 Msa0669850:CDS 45.0%
AAGGAGTTCAGTTTCTTGCC+GGG - chr4_4:11720458-11720477 Msa0669850:CDS 45.0%
! AAGCTATTGATGACCGAACC+CGG + chr4_4:11720479-11720498 None:intergenic 45.0%
ATTTCGCTATGCTACAGTGC+TGG + chr4_4:11720954-11720973 None:intergenic 45.0%
GGGTGTAAAAAGTGAAGACG+CGG - chr4_4:11721053-11721072 Msa0669850:five_prime_UTR 45.0%
GAGGTATGTTGTGTTCATCC+TGG - chr4_4:11721306-11721325 Msa0669850:intron 45.0%
CCGGATATTCCTTTCATACC+AGG + chr4_4:11721327-11721346 None:intergenic 45.0%
TTGAGAGCTGGGATTTCGTA+TGG - chr4_4:11721361-11721380 Msa0669850:intron 45.0%
TGAGAGCTGGGATTTCGTAT+GGG - chr4_4:11721362-11721381 Msa0669850:intron 45.0%
CATGGGGTATGTTACATGCA+TGG - chr4_4:11721446-11721465 Msa0669850:intron 45.0%
! AACATGTTTTTCCCTGTGGC+TGG + chr4_4:11721750-11721769 None:intergenic 45.0%
TGCACCTACCTATGAGCATT+TGG - chr4_4:11721877-11721896 Msa0669850:five_prime_UTR 45.0%
GCTTCCAAATGCTCATAGGT+AGG + chr4_4:11721884-11721903 None:intergenic 45.0%
! TGCTGCTTCCAAATGCTCAT+AGG + chr4_4:11721888-11721907 None:intergenic 45.0%
! CAGCTGATGCGAGCCTTTTT+CGG - chr4_4:11719936-11719955 Msa0669850:intron 50.0%
GTTCAGTTTCTTGCCGGGTT+CGG - chr4_4:11720463-11720482 Msa0669850:CDS 50.0%
GTGTCCCTGACAGAAACCAA+TGG + chr4_4:11721029-11721048 None:intergenic 50.0%
TTTCTGTCAGGGACACGACA+GGG - chr4_4:11721033-11721052 Msa0669850:five_prime_UTR 50.0%
GCTACAGCATGCAATTGCTG+AGG - chr4_4:11721131-11721150 Msa0669850:intron 50.0%
! TTTTGCCCACATGCCTTGCA+TGG + chr4_4:11721280-11721299 None:intergenic 50.0%
GCAAGGCATGTGGGCAAAAA+CGG - chr4_4:11721281-11721300 Msa0669850:intron 50.0%
AGTTCATGCTAGAGGGGACA+TGG - chr4_4:11721428-11721447 Msa0669850:intron 50.0%
GTTCATGCTAGAGGGGACAT+GGG - chr4_4:11721429-11721448 Msa0669850:intron 50.0%
TTCATGCTAGAGGGGACATG+GGG - chr4_4:11721430-11721449 Msa0669850:intron 50.0%
! ATGTTTTTCCCTGTGGCTGG+AGG + chr4_4:11721747-11721766 None:intergenic 50.0%
GTTTCTGTCAGGGACACGAC+AGG - chr4_4:11721032-11721051 Msa0669850:five_prime_UTR 55.0%
! GGAGAGCATGTTGAGCAGTG+AGG - chr4_4:11721074-11721093 Msa0669850:intron 55.0%
ACATGCCTTGCATGGCTGCA+AGG + chr4_4:11721272-11721291 None:intergenic 55.0%
TTGCAGCCATGCAAGGCATG+TGG - chr4_4:11721271-11721290 Msa0669850:intron 55.0%
TGCAGCCATGCAAGGCATGT+GGG - chr4_4:11721272-11721291 Msa0669850:intron 55.0%
CATGTGGGCAAAAACGGACG+AGG - chr4_4:11721287-11721306 Msa0669850:intron 55.0%
ACGAAAGGAGGAAGATGGGG+AGG - chr4_4:11721480-11721499 Msa0669850:intron 55.0%
TCGAGAGGATCAATGGCGAG+TGG - chr4_4:11721523-11721542 Msa0669850:intron 55.0%
! ATGAAGTGCCTCCAGCCACA+GGG - chr4_4:11721736-11721755 Msa0669850:intron 55.0%
! GATGAAGTGCCTCCAGCCAC+AGG - chr4_4:11721735-11721754 Msa0669850:intron 60.0%
GGCGACCTTGCAGCCATGCA+AGG - chr4_4:11721264-11721283 Msa0669850:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 11719040 11721953 11719040 ID=Msa0669850;Name=Msa0669850
chr4_4 mRNA 11719040 11721953 11719040 ID=Msa0669850-mRNA-1;Parent=Msa0669850;Name=Msa0669850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=226|1|1|1|0.66|0.5|4|366|255
chr4_4 exon 11719040 11719950 11719040 ID=Msa0669850-mRNA-1:exon:3554;Parent=Msa0669850-mRNA-1
chr4_4 exon 11720364 11720553 11720364 ID=Msa0669850-mRNA-1:exon:3553;Parent=Msa0669850-mRNA-1
chr4_4 exon 11720970 11721086 11720970 ID=Msa0669850-mRNA-1:exon:3552;Parent=Msa0669850-mRNA-1
chr4_4 exon 11721812 11721953 11721812 ID=Msa0669850-mRNA-1:exon:3551;Parent=Msa0669850-mRNA-1
chr4_4 five_prime_UTR 11721812 11721953 11721812 ID=Msa0669850-mRNA-1:five_prime_utr;Parent=Msa0669850-mRNA-1
chr4_4 five_prime_UTR 11721003 11721086 11721003 ID=Msa0669850-mRNA-1:five_prime_utr;Parent=Msa0669850-mRNA-1
chr4_4 CDS 11720970 11721002 11720970 ID=Msa0669850-mRNA-1:cds;Parent=Msa0669850-mRNA-1
chr4_4 CDS 11720364 11720553 11720364 ID=Msa0669850-mRNA-1:cds;Parent=Msa0669850-mRNA-1
chr4_4 CDS 11719406 11719950 11719406 ID=Msa0669850-mRNA-1:cds;Parent=Msa0669850-mRNA-1
chr4_4 three_prime_UTR 11719040 11719405 11719040 ID=Msa0669850-mRNA-1:three_prime_utr;Parent=Msa0669850-mRNA-1
Gene Sequence

>Msa0669850

ATGGCGCTTTATGCAACTGCGTTATCGTTCAACGGACTTTCTTCTACTCTCAAGGAGTTCAGTTTCTTGCCGGGTTCGGTCATCAATAGCTTTCACAAGCGACATGATGTTTGTCTGCAATCCTTTAATCCAAATAAGTTAGCTTTTGGCAAAAGTTTTGAAAGAGGAGACGAACTGTGTTTGTTGCCTAATCAATGCCTCAAGTTGCAAATGAGAAGATTCAGGACACGACAGGGTGTAAAAAGTGAAGACGCGGAGAGCATGTTGAGCAGTGAGGACATTGCATTAGATGAAAACACTTTAGAGGAAGAGCTACAGCATGCAATTGCTGAGGAGAATTATGCTAAAGCAGCAGAAATAAGGGATACACTAAAAAACCTACAAAAAGATAGCAACACAGCAGTATTTGGAGCAAACAGCAAGTTTTATGATTCATTCAGGAATGGCGACCTTGCAGCCATGCAAGGCATGTGGGCAAAAACGGACGAGGTATGTTGTGTTCATCCTGGTATGAAAGGAATATCCGGCTATGATGATGTTATTGAGAGCTGGGATTTCGTATGGGCTAACTATGAATTTCCATTACAAATCAAACTAGAAGACATTAAAGTTCATGCTAGAGGGGACATGGGGTATGTTACATGCATGGAATTTGTAAAAACGAAAGGAGGAAGATGGGGAGGACAATTTGTAACGAATGTGTTCGAGAGGATCAATGGCGAGTGGTTTATTTGTAATCATCATGCTTCACCAGTAGATATGAATTGA

Protein sequence

>Msa0669850

MALYATALSFNGLSSTLKEFSFLPGSVINSFHKRHDVCLQSFNPNKLAFGKSFERGDELCLLPNQCLKLQMRRFRTRQGVKSEDAESMLSSEDIALDENTLEEELQHAIAEENYAKAAEIRDTLKNLQKDSNTAVFGANSKFYDSFRNGDLAAMQGMWAKTDEVCCVHPGMKGISGYDDVIESWDFVWANYEFPLQIKLEDIKVHARGDMGYVTCMEFVKTKGGRWGGQFVTNVFERINGEWFICNHHASPVDMN*