Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051000 | G7KW71 | 55.111 | 450 | 152 | 7 | 150 | 568 | 72 | 502 | 3.88e-131 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027540 | Msa0051000 | 0.800380 | 1.481016e-48 | -8.615850e-47 |
| Msa0030310 | Msa0051000 | 0.800406 | 1.462658e-48 | -8.615850e-47 |
| Msa0051000 | Msa0072000 | 0.802723 | 4.899679e-49 | -8.615850e-47 |
| Msa0051000 | Msa0075310 | 0.800545 | 1.370862e-48 | -8.615850e-47 |
| Msa0051000 | Msa0079250 | 0.804378 | 2.223183e-49 | -8.615850e-47 |
| Msa0051000 | Msa0101290 | 0.918204 | 2.079641e-86 | -8.615850e-47 |
| Msa0051000 | Msa0105420 | 0.800783 | 1.225750e-48 | -8.615850e-47 |
| Msa0051000 | Msa0113160 | 0.810570 | 1.079312e-50 | -8.615850e-47 |
| Msa0051000 | Msa0143080 | 0.804501 | 2.095389e-49 | -8.615850e-47 |
| Msa0051000 | Msa0168100 | 0.823170 | 1.600034e-53 | -8.615850e-47 |
| Msa0051000 | Msa0172350 | 0.806045 | 9.954360e-50 | -8.615850e-47 |
| Msa0051000 | Msa0194970 | 0.815006 | 1.153212e-51 | -8.615850e-47 |
| Msa0051000 | Msa0207000 | 0.803610 | 3.210771e-49 | -8.615850e-47 |
| Msa0051000 | Msa0208630 | 0.805528 | 1.278283e-49 | -8.615850e-47 |
| Msa0051000 | Msa0267760 | 0.808942 | 2.417136e-50 | -8.615850e-47 |
| Msa0051000 | Msa0275030 | 0.825873 | 3.696928e-54 | -8.615850e-47 |
| Msa0051000 | Msa0490350 | 0.815673 | 8.197387e-52 | -8.615850e-47 |
| Msa0051000 | Msa0508200 | 0.816062 | 6.712573e-52 | -8.615850e-47 |
| Msa0051000 | Msa0526710 | 0.810631 | 1.047086e-50 | -8.615850e-47 |
| Msa0051000 | Msa0535030 | 0.829406 | 5.239342e-55 | -8.615850e-47 |
| Msa0051000 | Msa0535060 | 0.832101 | 1.145187e-55 | -8.615850e-47 |
| Msa0051000 | Msa0546380 | 0.811245 | 7.711503e-51 | -8.615850e-47 |
| Msa0051000 | Msa0591060 | 0.802765 | 4.802341e-49 | -8.615850e-47 |
| Msa0051000 | Msa0591770 | 0.824021 | 1.011521e-53 | -8.615850e-47 |
| Msa0051000 | Msa0669850 | 0.848762 | 4.984073e-60 | -8.615850e-47 |
| Msa0051000 | Msa0703590 | 0.802470 | 5.526385e-49 | -8.615850e-47 |
| Msa0051000 | Msa0709190 | 0.802971 | 4.355875e-49 | -8.615850e-47 |
| Msa0051000 | Msa0854570 | 0.819736 | 9.930308e-53 | -8.615850e-47 |
| Msa0051000 | Msa0890250 | 0.814747 | 1.316465e-51 | -8.615850e-47 |
| Msa0051000 | Msa1018050 | 0.814188 | 1.749219e-51 | -8.615850e-47 |
| Msa0051000 | Msa1056640 | 0.810900 | 9.159334e-51 | -8.615850e-47 |
| Msa0051000 | Msa1092820 | 0.803437 | 3.488254e-49 | -8.615850e-47 |
| Msa0051000 | Msa1217860 | 0.802686 | 4.985997e-49 | -8.615850e-47 |
| Msa0051000 | Msa1237030 | 0.835529 | 1.591604e-56 | -8.615850e-47 |
| Msa0051000 | Msa1280130 | 0.815333 | 9.752845e-52 | -8.615850e-47 |
| Msa0051000 | Msa1323190 | 0.801083 | 1.064350e-48 | -8.615850e-47 |
| Msa0051000 | Msa1362510 | 0.805031 | 1.624192e-49 | -8.615850e-47 |
| Msa0051000 | Msa1385620 | 0.817160 | 3.808517e-52 | -8.615850e-47 |
| Msa0051000 | Msa1432640 | 0.817095 | 3.937866e-52 | -8.615850e-47 |
| Msa0051000 | Msa1439960 | 0.801775 | 7.678602e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051000 | MtrunA17_Chr7g0251741 | 81.955 | 133 | 24 | 0 | 193 | 325 | 3 | 135 | 7.22e-68 | 221 |
| Msa0051000 | MtrunA17_Chr7g0251731 | 49.405 | 168 | 83 | 1 | 403 | 568 | 1 | 168 | 6.96e-37 | 138 |
| Msa0051000 | MtrunA17_Chr4g0048401 | 34.188 | 234 | 90 | 2 | 251 | 420 | 216 | 449 | 4.95e-24 | 107 |
| Msa0051000 | MtrunA17_Chr8g0342231 | 58.929 | 56 | 18 | 1 | 35 | 85 | 14 | 69 | 2.41e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051000 | AT1G61350.1 | 30.337 | 267 | 140 | 9 | 214 | 458 | 169 | 411 | 3.27e-16 | 83.2 |
Find 177 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACAGATGTATTGAATTTA+AGG | 0.078286 | 1_2:-5057227 | Msa0051000:CDS |
| GACCAATGCCAAATGAAATT+TGG | 0.179766 | 1_2:+5057911 | Msa0051010:intron |
| TGGCATCAGGTTTGACAAAA+TGG | 0.190365 | 1_2:-5056681 | Msa0051000:CDS |
| TTGCAACAGCTCAAGAATTT+TGG | 0.193883 | 1_2:+5058544 | Msa0051010:intron |
| GGTTGGTTTGGAAGAGATTT+TGG | 0.195951 | 1_2:-5055132 | Msa0051000:CDS |
| TGGGCATTAAAGAAGAAAAT+TGG | 0.232432 | 1_2:+5056640 | Msa0051010:intron |
| GCAAGTCAATCTTTCAATTC+TGG | 0.234907 | 1_2:-5057150 | Msa0051000:CDS |
| TACAGTGAGAGAATGGAATT+TGG | 0.236598 | 1_2:-5055195 | Msa0051000:CDS |
| GGATTAATGAGGCGTTTAAT+TGG | 0.237939 | 1_2:-5056924 | Msa0051000:CDS |
| ACGCTTCGATCTGGCGGTTT+TGG | 0.250033 | 1_2:+5058209 | Msa0051010:intron |
| ATCATTCCCTGTTGCATCTA+TGG | 0.251649 | 1_2:+5056771 | Msa0051010:intron |
| CCACTATACTCTGTTATAAT+TGG | 0.251722 | 1_2:-5057423 | Msa0051000:CDS |
| CTGTGGTAGTGGTGTTATTT+TGG | 0.251741 | 1_2:-5056720 | Msa0051000:CDS |
| TTTGATACATTGATATCTTA+TGG | 0.257979 | 1_2:+5057337 | Msa0051010:intron |
| GCGAGAGAGGGAGAAGGTTC+TGG | 0.263181 | 1_2:-5055168 | Msa0051000:CDS |
| TAAGGTTTATCATTGTTATT+AGG | 0.276779 | 1_2:-5057209 | Msa0051000:CDS |
| AACTTATGTCTTGGAATTCA+TGG | 0.283716 | 1_2:-5057288 | Msa0051000:CDS |
| AGAGGTGAATGAAGAAAATA+AGG | 0.285761 | 1_2:+5057062 | Msa0051010:intron |
| CATATTGTGCATTCATAATA+TGG | 0.289487 | 1_2:-5057487 | Msa0051000:CDS |
| CCACCAATGTTTGTAACTTT+AGG | 0.293662 | 1_2:+5056365 | Msa0051010:intron |
| ATTGTTGGTGGCTATGTTAA+TGG | 0.302020 | 1_2:-5056601 | Msa0051000:CDS |
| AGAAAATAAGGCAATTAAAA+TGG | 0.308231 | 1_2:+5057074 | Msa0051010:intron |
| GAGAGAGAGAGTGGTTGGTT+TGG | 0.310741 | 1_2:-5055144 | Msa0051000:CDS |
| CCTTCAATTGATTTCAATGC+TGG | 0.333526 | 1_2:-5058383 | Msa0051000:CDS |
| TTCTTCCACTAACTGAATCT+TGG | 0.337216 | 1_2:+5057026 | Msa0051010:intron |
| CTTGAGAAGTACCACTAGTT+TGG | 0.339104 | 1_2:-5056401 | Msa0051000:CDS |
| GTAACAGAATGTTCCTCTAT+TGG | 0.345499 | 1_2:+5058452 | Msa0051010:intron |
| AATGGCCACCTCATGGAGTT+TGG | 0.346533 | 1_2:+5057092 | Msa0051010:intron |
| TATGGCTCTAAGAACTTGTT+AGG | 0.350553 | 1_2:-5056442 | Msa0051000:CDS |
| ATCAAACAGTGACGCAGTTC+AGG | 0.355464 | 1_2:-5057517 | Msa0051000:CDS |
| TTACTAAAGAGACTAGAATA+TGG | 0.365619 | 1_2:+5056523 | Msa0051010:intron |
| TGAGATTTCCAAATTTCATT+TGG | 0.365637 | 1_2:-5057919 | Msa0051000:CDS |
| ATACAACATAGAAATGAAAT+AGG | 0.366199 | 1_2:+5056478 | Msa0051010:intron |
| AAGAATTATTGTTGGTGGTA+AGG | 0.367309 | 1_2:-5057598 | Msa0051000:CDS |
| CTGGGGAGAGAGAGAGTGGT+TGG | 0.367992 | 1_2:-5055149 | Msa0051000:CDS |
| TGTACCCAAGATTCAGTTAG+TGG | 0.369913 | 1_2:-5057031 | Msa0051000:CDS |
| TCTATGATATTTGCACTTGT+GGG | 0.374132 | 1_2:-5056991 | Msa0051000:CDS |
| CAGTTTGTCCACTACCTGTT+TGG | 0.374237 | 1_2:-5058058 | Msa0051000:CDS |
| GTGCATACAATGGTAGAATA+TGG | 0.379518 | 1_2:-5056901 | Msa0051000:CDS |
| GGTGGAGGCATGCTGCATTC+CGG | 0.381132 | 1_2:+5058236 | Msa0051010:intron |
| GGGAATTATGAACTTGTTCA+TGG | 0.385029 | 1_2:-5056824 | Msa0051000:CDS |
| CAAACAATAAAACGAAAGTA+TGG | 0.388701 | 1_2:+5058088 | Msa0051010:intron |
| CTACGAATTTAGCTTATGCT+TGG | 0.391853 | 1_2:-5057674 | Msa0051000:CDS |
| GGAAGATGTGAGAGATGATA+AGG | 0.391926 | 1_2:-5055087 | Msa0051000:CDS |
| ATGGTTATGTTGAAGTGAAT+TGG | 0.392524 | 1_2:-5056582 | Msa0051000:CDS |
| TGTACAAGTATTACAGTGTA+TGG | 0.393461 | 1_2:-5057862 | Msa0051000:CDS |
| TGTATTGCAAAGAATGCTTA+TGG | 0.394302 | 1_2:-5056460 | Msa0051000:CDS |
| TATCATTTAACATTATTGTA+AGG | 0.397773 | 1_2:+5057949 | Msa0051010:intron |
| ATGACTCATCTATTGATGTC+AGG | 0.401827 | 1_2:-5056325 | Msa0051000:CDS |
| CGAGAGAGGGAGAAGGTTCT+GGG | 0.402856 | 1_2:-5055167 | Msa0051000:CDS |
| ACAGTGAGAGAATGGAATTT+GGG | 0.409706 | 1_2:-5055194 | Msa0051000:CDS |
| GAATATGGAACTCCATCTAT+TGG | 0.411971 | 1_2:+5056538 | Msa0051010:intron |
| CTGAGTAATGCACCAATAGA+TGG | 0.412702 | 1_2:-5056550 | Msa0051000:CDS |
| GGAATTCATGGTAACTTTGG+TGG | 0.415303 | 1_2:-5057276 | Msa0051000:CDS |
| CATCTATTGGTGCATTACTC+AGG | 0.427444 | 1_2:+5056551 | Msa0051010:intron |
| TCTATTCTCAACTTATGTCT+TGG | 0.428226 | 1_2:-5057297 | Msa0051000:CDS |
| GATTAATGAGGCGTTTAATT+GGG | 0.428964 | 1_2:-5056923 | Msa0051000:CDS |
| AAGGAAATACACGGTGTAAT+GGG | 0.429871 | 1_2:-5057579 | Msa0051000:CDS |
| CACTGCTCTGGAATTGTCAT+CGG | 0.430664 | 1_2:+5058115 | Msa0051010:intron |
| CACAAGTCCATAGATGCAAC+AGG | 0.432187 | 1_2:-5056778 | Msa0051000:CDS |
| TCTTCCACTAACTGAATCTT+GGG | 0.434862 | 1_2:+5057027 | Msa0051010:intron |
| CTGGGAAAATGCCTAGCCTA+TGG | 0.436133 | 1_2:-5056946 | Msa0051000:CDS |
| TCATCGGGTGGGTGTGGTGG+TGG | 0.436905 | 1_2:+5058131 | Msa0051010:intron |
| TACGAATTTAGCTTATGCTT+GGG | 0.438861 | 1_2:-5057673 | Msa0051000:CDS |
| ATCTATGATATTTGCACTTG+TGG | 0.439471 | 1_2:-5056992 | Msa0051000:CDS |
| TTCAATGTGTTAGCTATGAA+TGG | 0.440360 | 1_2:-5055050 | Msa0051000:CDS |
| GGAATTTGGGAGAGCGAGAG+AGG | 0.451858 | 1_2:-5055181 | Msa0051000:CDS |
| CTTGGAATTCATGGTAACTT+TGG | 0.453762 | 1_2:-5057279 | Msa0051000:CDS |
| GAACGAAGAAGATAGAGAAA+GGG | 0.455707 | 1_2:-5055009 | Msa0051000:CDS |
| TTCCAAATTTCATTTGGCAT+TGG | 0.455939 | 1_2:-5057913 | Msa0051000:CDS |
| TATATCAAAACCAGAATTTG+TGG | 0.456826 | 1_2:+5057747 | Msa0051010:intron |
| TTGCAGTTACAGTGAGAGAA+TGG | 0.456873 | 1_2:-5055202 | Msa0051000:CDS |
| CCCACCTTGCTGAGTAATTG+TGG | 0.457219 | 1_2:-5057627 | Msa0051000:CDS |
| TTGGATGAGACTACGGCAAA+TGG | 0.457891 | 1_2:-5056701 | Msa0051000:CDS |
| AAGTATGGAGTCCACTGCTC+TGG | 0.458536 | 1_2:+5058103 | Msa0051010:intron |
| TGCTATAAAGGGGATTTAGT+TGG | 0.459651 | 1_2:-5057786 | Msa0051000:CDS |
| TGAACGAAGAAGATAGAGAA+AGG | 0.460529 | 1_2:-5055010 | Msa0051000:CDS |
| CATCTATTGATGTCAGGGTT+AGG | 0.461472 | 1_2:-5056319 | Msa0051000:CDS |
| ATGAAATAGGTGGACTGTGC+AGG | 0.463949 | 1_2:+5056491 | Msa0051010:intron |
| GGAAGAAGAAAATGCTAAAG+TGG | 0.465041 | 1_2:-5057832 | Msa0051000:CDS |
| TATGTTGAAGTGAATTGGTT+TGG | 0.465220 | 1_2:-5056577 | Msa0051000:CDS |
| TAAGGAAATACACGGTGTAA+TGG | 0.467119 | 1_2:-5057580 | Msa0051000:CDS |
| ACCACAGCTTTAGTGAGACT+TGG | 0.468018 | 1_2:+5056736 | Msa0051010:intron |
| GGTTCTGGGGAGAGAGAGAG+TGG | 0.468084 | 1_2:-5055153 | Msa0051000:CDS |
| CCACCTTGCTGAGTAATTGT+GGG | 0.468172 | 1_2:-5057626 | Msa0051000:CDS |
| TCAGGTTTGACAAAATGGTT+TGG | 0.469024 | 1_2:-5056676 | Msa0051000:CDS |
| GTTTCAAATCAATGACTCCT+TGG | 0.472171 | 1_2:-5058012 | Msa0051000:CDS |
| GGGGTGTTAAGAATTATTGT+TGG | 0.476867 | 1_2:-5057606 | Msa0051000:CDS |
| AGACTACGGCAAATGGCATC+AGG | 0.479038 | 1_2:-5056694 | Msa0051000:CDS |
| TCTTCACCTGGGATGATTCA+CGG | 0.483433 | 1_2:+5058429 | Msa0051010:intron |
| TTTGGTGGTCTCTCTTGTCA+TGG | 0.485214 | 1_2:-5057261 | Msa0051000:CDS |
| AGACGAAGTTGTTGCGTCCG+TGG | 0.492426 | 1_2:-5058477 | Msa0051000:CDS |
| TTCTGGTGACTCAAGGCTGA+TGG | 0.493252 | 1_2:-5057133 | Msa0051000:CDS |
| TGGAATGATCGCAGCGGCGC+CGG | 0.495480 | 1_2:-5058255 | Msa0051000:CDS |
| TGACTCAAGGCTGATGGGAG+TGG | 0.495694 | 1_2:-5057127 | Msa0051000:CDS |
| CTTCACCTGGGATGATTCAC+GGG | 0.496878 | 1_2:+5058430 | Msa0051010:intron |
| CAATTAAAATGGCCACCTCA+TGG | 0.499278 | 1_2:+5057085 | Msa0051010:intron |
| GGAGAAGGAGAGTGAAGAGA+GGG | 0.500055 | 1_2:-5055108 | Msa0051000:CDS |
| AGATGTTTCAATTCAAGAGT+TGG | 0.501769 | 1_2:-5057400 | Msa0051000:CDS |
| CTTTCAATTCTGGTGACTCA+AGG | 0.506077 | 1_2:-5057140 | Msa0051000:CDS |
| GAATTGTCATCGGGTGGGTG+TGG | 0.506805 | 1_2:+5058125 | Msa0051010:intron |
| CCAGCATTGAAATCAATTGA+AGG | 0.506848 | 1_2:+5058383 | Msa0051010:intron |
| TGTAATGGGTGAGGAAGGTC+TGG | 0.508914 | 1_2:-5057565 | Msa0051000:CDS |
| TGACTCATCTATTGATGTCA+GGG | 0.509797 | 1_2:-5056324 | Msa0051000:CDS |
| CCTAAAGTTACAAACATTGG+TGG | 0.510882 | 1_2:-5056365 | Msa0051000:CDS |
| CTGTTGCATCTATGGACTTG+TGG | 0.511030 | 1_2:+5056779 | Msa0051010:intron |
| TTGTCATCGGGTGGGTGTGG+TGG | 0.511645 | 1_2:+5058128 | Msa0051010:intron |
| ATTTCATTTGGCATTGGTCA+AGG | 0.515961 | 1_2:-5057907 | Msa0051000:CDS |
| TGACGATTAAATTCTTCACC+TGG | 0.516428 | 1_2:+5058417 | Msa0051010:intron |
| CCACAGCTTTAGTGAGACTT+GGG | 0.518270 | 1_2:+5056737 | Msa0051010:intron |
| ACTGCTCTGGAATTGTCATC+GGG | 0.519812 | 1_2:+5058116 | Msa0051010:intron |
| AACGAAGAAGATAGAGAAAG+GGG | 0.520760 | 1_2:-5055008 | Msa0051000:CDS |
| AAGACATAAGTTGAGAATAG+AGG | 0.520980 | 1_2:+5057299 | Msa0051010:intron |
| TCTCACTAAAGCTGTGGTAG+TGG | 0.521675 | 1_2:-5056731 | Msa0051000:CDS |
| CTCTGGAATTGTCATCGGGT+GGG | 0.522293 | 1_2:+5058120 | Msa0051010:intron |
| TTCATAATTCCCTTATCAGA+AGG | 0.524538 | 1_2:+5056835 | Msa0051010:intron |
| TCTGGTGACTCAAGGCTGAT+GGG | 0.538812 | 1_2:-5057132 | Msa0051000:CDS |
| GAATTTGGGAGAGCGAGAGA+GGG | 0.540387 | 1_2:-5055180 | Msa0051000:CDS |
| AGGAGAAGGAGAGTGAAGAG+AGG | 0.540862 | 1_2:-5055109 | Msa0051000:CDS |
| TGGGAAAATGCCTAGCCTAT+GGG | 0.541655 | 1_2:-5056945 | Msa0051000:CDS |
| CGGAAGTGCTTCGCTCGCCT+CGG | 0.542712 | 1_2:+5058505 | Msa0051010:intron |
| CCAATTATAACAGAGTATAG+TGG | 0.551052 | 1_2:+5057423 | Msa0051010:intron |
| CGACGAAATTTCATTCGAAG+TGG | 0.551347 | 1_2:-5058172 | Msa0051000:CDS |
| ACTTGACGCGGATACGAAGA+AGG | 0.551772 | 1_2:-5058348 | Msa0051000:CDS |
| GGGAGAGCGAGAGAGGGAGA+AGG | 0.555061 | 1_2:-5055174 | Msa0051000:CDS |
| GTGTTAAGAATTATTGTTGG+TGG | 0.555626 | 1_2:-5057603 | Msa0051000:CDS |
| GTGTGGTGGTGGTCGAAGCA+TGG | 0.557644 | 1_2:+5058142 | Msa0051010:intron |
| GCTCTGGAATTGTCATCGGG+TGG | 0.558602 | 1_2:+5058119 | Msa0051010:intron |
| TGCGTCCGTGGAACCAATAG+AGG | 0.559714 | 1_2:-5058465 | Msa0051000:CDS |
| AATTCTTGAGCTGTTGCAAG+AGG | 0.563669 | 1_2:-5058540 | Msa0051000:CDS |
| GTACAAGTATTACAGTGTAT+GGG | 0.564577 | 1_2:-5057861 | Msa0051000:CDS |
| CAAATTCTCTGAAACATCAA+AGG | 0.569987 | 1_2:-5057361 | Msa0051000:CDS |
| AGATCGAAGCGTTCAAAAGA+CGG | 0.570905 | 1_2:-5058198 | Msa0051000:CDS |
| GTTTAATTGGGTGCATACAA+TGG | 0.570997 | 1_2:-5056911 | Msa0051000:CDS |
| ACTAGTTTGGTTCATGAGAG+TGG | 0.572202 | 1_2:-5056388 | Msa0051000:CDS |
| ATGTTCCTCTATTGGTTCCA+CGG | 0.572221 | 1_2:+5058460 | Msa0051010:intron |
| AAACGCCTCATTAATCCCAT+AGG | 0.573849 | 1_2:+5056930 | Msa0051010:intron |
| GTCTCTAGAACTATTCTCAA+AGG | 0.576204 | 1_2:-5057465 | Msa0051000:CDS |
| ATCTATTGGTGCATTACTCA+GGG | 0.577979 | 1_2:+5056552 | Msa0051010:intron |
| GAAATCAAACAAGGATGCCA+AGG | 0.578187 | 1_2:+5057995 | Msa0051010:intron |
| GCAACAACTTCGTCTGAAGT+CGG | 0.588264 | 1_2:+5058485 | Msa0051010:intron |
| CCTCATTAATCCCATAGGCT+AGG | 0.588969 | 1_2:+5056935 | Msa0051010:intron |
| CACGGTGTAATGGGTGAGGA+AGG | 0.589977 | 1_2:-5057570 | Msa0051000:CDS |
| CTATGATATTTGCACTTGTG+GGG | 0.598603 | 1_2:-5056990 | Msa0051000:CDS |
| TGGCCTAAAGTTACAAACAT+TGG | 0.600583 | 1_2:-5056368 | Msa0051000:CDS |
| ATGTGTTAGCTATGAATGGA+TGG | 0.603428 | 1_2:-5055046 | Msa0051000:CDS |
| CAAGGCTGATGGGAGTGGAA+TGG | 0.604686 | 1_2:-5057122 | Msa0051000:CDS |
| TGTTACCCGTGAATCATCCC+AGG | 0.608668 | 1_2:-5058435 | Msa0051000:CDS |
| AGCTAACACATTGAAAACAA+TGG | 0.610537 | 1_2:+5055058 | None:intergenic |
| CGATGACAATTCCAGAGCAG+TGG | 0.610651 | 1_2:-5058114 | Msa0051000:CDS |
| AATACACGGTGTAATGGGTG+AGG | 0.610938 | 1_2:-5057574 | Msa0051000:CDS |
| CACCCCACAATTACTCAGCA+AGG | 0.612129 | 1_2:+5057623 | Msa0051010:intron |
| CTCTTCTGAAAACCACACTC+TGG | 0.613516 | 1_2:+5058281 | Msa0051010:intron |
| CACCTTGCTGAGTAATTGTG+GGG | 0.618356 | 1_2:-5057625 | Msa0051000:CDS |
| GACGATTAAATTCTTCACCT+GGG | 0.619100 | 1_2:+5058418 | Msa0051010:intron |
| CCCAAGTCTCACTAAAGCTG+TGG | 0.620324 | 1_2:-5056737 | Msa0051000:CDS |
| GAGAGAGGGAGAAGGTTCTG+GGG | 0.622430 | 1_2:-5055166 | Msa0051000:CDS |
| CCTAGCCTATGGGATTAATG+AGG | 0.622827 | 1_2:-5056935 | Msa0051000:CDS |
| GAGTGCCAAACTCCATGAGG+TGG | 0.624183 | 1_2:-5057097 | Msa0051000:CDS |
| CCACAATTACTCAGCAAGGT+GGG | 0.624557 | 1_2:+5057627 | Msa0051010:intron |
| GTTAGCTATGAATGGATGGA+TGG | 0.627566 | 1_2:-5055042 | Msa0051000:CDS |
| CTAAGAACTTGTTAGGTGTG+AGG | 0.631153 | 1_2:-5056435 | Msa0051000:CDS |
| CAACATAGAAATGAAATAGG+TGG | 0.632412 | 1_2:+5056481 | Msa0051010:intron |
| AACTACAAATCTACTTGACG+CGG | 0.639003 | 1_2:-5058360 | Msa0051000:CDS |
| CCCACAATTACTCAGCAAGG+TGG | 0.646536 | 1_2:+5057626 | Msa0051010:intron |
| CTTGGGTACAGAAATAGAAG+AGG | 0.648326 | 1_2:+5057044 | Msa0051010:intron |
| AGAGGAGATAGACGCTACCG+AGG | 0.669824 | 1_2:-5058522 | Msa0051000:CDS |
| AACATCGCAACACCAGAGTG+TGG | 0.677579 | 1_2:-5058293 | Msa0051000:CDS |
| GCATTGAAATCAATTGAAGG+AGG | 0.678078 | 1_2:+5058386 | Msa0051010:intron |
| GGAACATATCAAGACACCAA+AGG | 0.678803 | 1_2:-5056298 | Msa0051000:intron |
| AGGACGAAGGAAATCAAACA+AGG | 0.679398 | 1_2:+5057986 | Msa0051010:intron |
| ACTCTCATGAACCAAACTAG+TGG | 0.692281 | 1_2:+5056390 | Msa0051010:intron |
| GTGGTGGTCGAAGCATGGTG+AGG | 0.708190 | 1_2:+5058147 | Msa0051010:intron |
| ACAAGTCCATAGATGCAACA+GGG | 0.713602 | 1_2:-5056777 | Msa0051000:CDS |
| GAGCATTGGAATGATCGCAG+CGG | 0.720176 | 1_2:-5058261 | Msa0051000:CDS |
| GTTGGTGGTAAGGAAATACA+CGG | 0.721306 | 1_2:-5057588 | Msa0051000:CDS |
| GCTGAGTGCCAAACTCCATG+AGG | 0.769923 | 1_2:-5057100 | Msa0051000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCATTTAACATTATTGTA+AGG | + | chr1_2:5055639-5055658 | Msa0051010:intron | 15.0% |
| !!! | AAATTCTGGTTTTGATATAT+GGG | - | chr1_2:5055842-5055861 | Msa0051000:intron | 20.0% |
| !! | TTTGATACATTGATATCTTA+TGG | + | chr1_2:5056251-5056270 | Msa0051010:intron | 20.0% |
| !! | TAACAGATGTATTGAATTTA+AGG | - | chr1_2:5056358-5056377 | Msa0051000:CDS | 20.0% |
| !!! | TAAGGTTTATCATTGTTATT+AGG | - | chr1_2:5056376-5056395 | Msa0051000:CDS | 20.0% |
| !! | AGAAAATAAGGCAATTAAAA+TGG | + | chr1_2:5056514-5056533 | Msa0051010:intron | 20.0% |
| !! | AAGGAAAATCAAGAAAAATA+TGG | + | chr1_2:5056734-5056753 | Msa0051010:intron | 20.0% |
| !! | AATAAAAACAACACATGTTT+GGG | + | chr1_2:5056967-5056986 | Msa0051010:intron | 20.0% |
| !! | ATACAACATAGAAATGAAAT+AGG | + | chr1_2:5057110-5057129 | Msa0051010:intron | 20.0% |
| !! | TTCTCTTAATCTTCTATAAA+AGG | - | chr1_2:5057646-5057665 | Msa0051000:CDS | 20.0% |
| !! | TCTCTTAATCTTCTATAAAA+GGG | - | chr1_2:5057647-5057666 | Msa0051000:CDS | 20.0% |
| !! | AGAAAATTATAATGTGGTAT+TGG | + | chr1_2:5058083-5058102 | Msa0051010:intron | 20.0% |
| !! | ACGTTAAGAAAATTATAATG+TGG | + | chr1_2:5058089-5058108 | Msa0051010:intron | 20.0% |
| ! | CAAACAATAAAACGAAAGTA+TGG | + | chr1_2:5055500-5055519 | Msa0051010:intron | 25.0% |
| !!! | CATACTTTCGTTTTATTGTT+TGG | - | chr1_2:5055498-5055517 | Msa0051000:intron | 25.0% |
| ! | TGAGATTTCCAAATTTCATT+TGG | - | chr1_2:5055666-5055685 | Msa0051000:intron | 25.0% |
| !!! | TCAATTTTTGACTGCTATAA+AGG | - | chr1_2:5055787-5055806 | Msa0051000:intron | 25.0% |
| !!! | CAATTTTTGACTGCTATAAA+GGG | - | chr1_2:5055788-5055807 | Msa0051000:intron | 25.0% |
| !!! | AATTTTTGACTGCTATAAAG+GGG | - | chr1_2:5055789-5055808 | Msa0051000:intron | 25.0% |
| ! | TATATCAAAACCAGAATTTG+TGG | + | chr1_2:5055841-5055860 | Msa0051010:intron | 25.0% |
| !!! | CAAATTCTGGTTTTGATATA+TGG | - | chr1_2:5055841-5055860 | Msa0051000:intron | 25.0% |
| ! | CATATTGTGCATTCATAATA+TGG | - | chr1_2:5056098-5056117 | Msa0051000:intron | 25.0% |
| ! | CAATAAAAACAACACATGTT+TGG | + | chr1_2:5056968-5056987 | Msa0051010:intron | 25.0% |
| !!! | ACATGTGTTGTTTTTATTGT+TGG | - | chr1_2:5056969-5056988 | Msa0051000:CDS | 25.0% |
| ! | TTACTAAAGAGACTAGAATA+TGG | + | chr1_2:5057065-5057084 | Msa0051010:intron | 25.0% |
| !!! | GCTATTTTTTCCATATCAAA+AGG | - | chr1_2:5057378-5057397 | Msa0051000:CDS | 25.0% |
| ! | ATTAAAGTGGAATCAACAAT+TGG | - | chr1_2:5057560-5057579 | Msa0051000:CDS | 25.0% |
| ! | TAGAATTATCCCTTAATTGT+TGG | + | chr1_2:5057615-5057634 | Msa0051010:intron | 25.0% |
| ! | TCTTAGTACATAAAGGATAA+AGG | + | chr1_2:5057771-5057790 | Msa0051010:intron | 25.0% |
| ! | TTGATGTTCTTAGTACATAA+AGG | + | chr1_2:5057778-5057797 | Msa0051010:intron | 25.0% |
| !!! | GTTGAGTTGAGTTTTTTTTA+CGG | + | chr1_2:5057958-5057977 | Msa0051010:intron | 25.0% |
| !! | ATAATGTGGTATTGGATTTA+GGG | + | chr1_2:5058075-5058094 | Msa0051010:intron | 25.0% |
| !! | TATAATGTGGTATTGGATTT+AGG | + | chr1_2:5058076-5058095 | Msa0051010:intron | 25.0% |
| !! | TAGATTTAACGTATGTTTTG+AGG | - | chr1_2:5058323-5058342 | Msa0051000:CDS | 25.0% |
| TGGAAAAATGTCAGTGTTAA+CGG | - | chr1_2:5055547-5055566 | Msa0051000:intron | 30.0% | |
| TTCCAAATTTCATTTGGCAT+TGG | - | chr1_2:5055672-5055691 | Msa0051000:intron | 30.0% | |
| TGTACAAGTATTACAGTGTA+TGG | - | chr1_2:5055723-5055742 | Msa0051000:intron | 30.0% | |
| GTACAAGTATTACAGTGTAT+GGG | - | chr1_2:5055724-5055743 | Msa0051000:intron | 30.0% | |
| ! | TACGAATTTAGCTTATGCTT+GGG | - | chr1_2:5055912-5055931 | Msa0051000:intron | 30.0% |
| GTGTTAAGAATTATTGTTGG+TGG | - | chr1_2:5055982-5056001 | Msa0051000:intron | 30.0% | |
| !! | AAGAATTATTGTTGGTGGTA+AGG | - | chr1_2:5055987-5056006 | Msa0051000:intron | 30.0% |
| CCAATTATAACAGAGTATAG+TGG | + | chr1_2:5056165-5056184 | Msa0051010:intron | 30.0% | |
| CCACTATACTCTGTTATAAT+TGG | - | chr1_2:5056162-5056181 | Msa0051000:intron | 30.0% | |
| AGATGTTTCAATTCAAGAGT+TGG | - | chr1_2:5056185-5056204 | Msa0051000:intron | 30.0% | |
| !! | CAAATTCTCTGAAACATCAA+AGG | - | chr1_2:5056224-5056243 | Msa0051000:intron | 30.0% |
| ! | AAGACATAAGTTGAGAATAG+AGG | + | chr1_2:5056289-5056308 | Msa0051010:intron | 30.0% |
| TCTATTCTCAACTTATGTCT+TGG | - | chr1_2:5056288-5056307 | Msa0051000:intron | 30.0% | |
| AACTTATGTCTTGGAATTCA+TGG | - | chr1_2:5056297-5056316 | Msa0051000:intron | 30.0% | |
| AGAGGTGAATGAAGAAAATA+AGG | + | chr1_2:5056526-5056545 | Msa0051010:intron | 30.0% | |
| ATCTATGATATTTGCACTTG+TGG | - | chr1_2:5056593-5056612 | Msa0051000:CDS | 30.0% | |
| TCTATGATATTTGCACTTGT+GGG | - | chr1_2:5056594-5056613 | Msa0051000:CDS | 30.0% | |
| ! | AGTTTATAATGCTTTTGTCC+TGG | - | chr1_2:5056620-5056639 | Msa0051000:CDS | 30.0% |
| ! | GTTTATAATGCTTTTGTCCT+GGG | - | chr1_2:5056621-5056640 | Msa0051000:CDS | 30.0% |
| ! | GATTAATGAGGCGTTTAATT+GGG | - | chr1_2:5056662-5056681 | Msa0051000:CDS | 30.0% |
| ! | TCTTGATTTTCCTTCTGATA+AGG | - | chr1_2:5056740-5056759 | Msa0051000:CDS | 30.0% |
| ! | CTTGATTTTCCTTCTGATAA+GGG | - | chr1_2:5056741-5056760 | Msa0051000:CDS | 30.0% |
| TTCATAATTCCCTTATCAGA+AGG | + | chr1_2:5056753-5056772 | Msa0051010:intron | 30.0% | |
| !!! | TGTTATTTTGGATGAGACTA+CGG | - | chr1_2:5056877-5056896 | Msa0051000:CDS | 30.0% |
| TGGGCATTAAAGAAGAAAAT+TGG | + | chr1_2:5056948-5056967 | Msa0051010:intron | 30.0% | |
| !!! | TGTGTTGTTTTTATTGTTGG+TGG | - | chr1_2:5056972-5056991 | Msa0051000:CDS | 30.0% |
| ATGGTTATGTTGAAGTGAAT+TGG | - | chr1_2:5057003-5057022 | Msa0051000:CDS | 30.0% | |
| TATGTTGAAGTGAATTGGTT+TGG | - | chr1_2:5057008-5057027 | Msa0051000:CDS | 30.0% | |
| CAACATAGAAATGAAATAGG+TGG | + | chr1_2:5057107-5057126 | Msa0051010:intron | 30.0% | |
| TGTATTGCAAAGAATGCTTA+TGG | - | chr1_2:5057125-5057144 | Msa0051000:CDS | 30.0% | |
| ATGTTAGAAGTGAAACATTG+CGG | + | chr1_2:5057335-5057354 | Msa0051010:intron | 30.0% | |
| GATATGGAAAAAATAGCCAA+CGG | + | chr1_2:5057375-5057394 | Msa0051010:intron | 30.0% | |
| !! | AGGACAAGGTTGATTTTAAT+GGG | - | chr1_2:5057497-5057516 | Msa0051000:CDS | 30.0% |
| TTGATTCCACTTTAATGACT+TGG | + | chr1_2:5057556-5057575 | Msa0051010:intron | 30.0% | |
| TCAACAATTGGTTAGAGAAA+AGG | - | chr1_2:5057572-5057591 | Msa0051000:CDS | 30.0% | |
| CAACAATTGGTTAGAGAAAA+GGG | - | chr1_2:5057573-5057592 | Msa0051000:CDS | 30.0% | |
| TCACTTGATCCAACAATTAA+GGG | - | chr1_2:5057603-5057622 | Msa0051000:CDS | 30.0% | |
| TTAGAAAGGAATAAAAGCAG+TGG | + | chr1_2:5057925-5057944 | Msa0051010:intron | 30.0% | |
| !!! | AGTTGAGTTTTTTTTACGGA+TGG | + | chr1_2:5057954-5057973 | Msa0051010:intron | 30.0% |
| !!! | TGCTGAAAGGTTTTGTTAAT+TGG | + | chr1_2:5058009-5058028 | Msa0051010:intron | 30.0% |
| GTGAATAAGTTAATGCTGAA+AGG | + | chr1_2:5058022-5058041 | Msa0051010:intron | 30.0% | |
| ATGAATAAACCTTAGCATCA+CGG | - | chr1_2:5058191-5058210 | Msa0051000:CDS | 30.0% | |
| AGCTAACACATTGAAAACAA+TGG | + | chr1_2:5058530-5058549 | Msa0051010:intron | 30.0% | |
| TTCAATGTGTTAGCTATGAA+TGG | - | chr1_2:5058535-5058554 | Msa0051000:CDS | 30.0% | |
| ! | TTGCAACAGCTCAAGAATTT+TGG | + | chr1_2:5055044-5055063 | None:intergenic | 35.0% |
| GTAACAGAATGTTCCTCTAT+TGG | + | chr1_2:5055136-5055155 | Msa0051010:CDS | 35.0% | |
| GACGATTAAATTCTTCACCT+GGG | + | chr1_2:5055170-5055189 | Msa0051010:CDS | 35.0% | |
| TGACGATTAAATTCTTCACC+TGG | + | chr1_2:5055171-5055190 | Msa0051010:CDS | 35.0% | |
| GCATTGAAATCAATTGAAGG+AGG | + | chr1_2:5055202-5055221 | Msa0051010:CDS | 35.0% | |
| ! | CCAGCATTGAAATCAATTGA+AGG | + | chr1_2:5055205-5055224 | Msa0051010:CDS | 35.0% |
| ! | CCTTCAATTGATTTCAATGC+TGG | - | chr1_2:5055202-5055221 | Msa0051000:CDS | 35.0% |
| AACTACAAATCTACTTGACG+CGG | - | chr1_2:5055225-5055244 | Msa0051000:intron | 35.0% | |
| ! | ACATTTTTCCAAACAGGTAG+TGG | + | chr1_2:5055538-5055557 | Msa0051010:intron | 35.0% |
| ! | ACACTGACATTTTTCCAAAC+AGG | + | chr1_2:5055544-5055563 | Msa0051010:intron | 35.0% |
| GTTTCAAATCAATGACTCCT+TGG | - | chr1_2:5055573-5055592 | Msa0051000:intron | 35.0% | |
| ! | GTAAGGATTTTATGTGTGTG+AGG | + | chr1_2:5055622-5055641 | Msa0051010:intron | 35.0% |
| GACCAATGCCAAATGAAATT+TGG | + | chr1_2:5055677-5055696 | Msa0051010:intron | 35.0% | |
| !! | ATTTCATTTGGCATTGGTCA+AGG | - | chr1_2:5055678-5055697 | Msa0051000:intron | 35.0% |
| ! | ATTACAGTGTATGGGTTTTG+AGG | - | chr1_2:5055732-5055751 | Msa0051000:intron | 35.0% |
| GGAAGAAGAAAATGCTAAAG+TGG | - | chr1_2:5055753-5055772 | Msa0051000:intron | 35.0% | |
| TGCTATAAAGGGGATTTAGT+TGG | - | chr1_2:5055799-5055818 | Msa0051000:intron | 35.0% | |
| ! | CATTTTTGTGCCACAAATTC+TGG | - | chr1_2:5055828-5055847 | Msa0051000:intron | 35.0% |
| ! | CTACGAATTTAGCTTATGCT+TGG | - | chr1_2:5055911-5055930 | Msa0051000:intron | 35.0% |
| ! | GGGGTGTTAAGAATTATTGT+TGG | - | chr1_2:5055979-5055998 | Msa0051000:intron | 35.0% |
| TAAGGAAATACACGGTGTAA+TGG | - | chr1_2:5056005-5056024 | Msa0051000:intron | 35.0% | |
| AAGGAAATACACGGTGTAAT+GGG | - | chr1_2:5056006-5056025 | Msa0051000:intron | 35.0% | |
| !! | GTCTCTAGAACTATTCTCAA+AGG | - | chr1_2:5056120-5056139 | Msa0051000:intron | 35.0% |
| CTTGGAATTCATGGTAACTT+TGG | - | chr1_2:5056306-5056325 | Msa0051000:CDS | 35.0% | |
| GCAAGTCAATCTTTCAATTC+TGG | - | chr1_2:5056435-5056454 | Msa0051000:CDS | 35.0% | |
| TCTTCCACTAACTGAATCTT+GGG | + | chr1_2:5056561-5056580 | Msa0051010:intron | 35.0% | |
| TTCTTCCACTAACTGAATCT+TGG | + | chr1_2:5056562-5056581 | Msa0051010:intron | 35.0% | |
| CTATGATATTTGCACTTGTG+GGG | - | chr1_2:5056595-5056614 | Msa0051000:CDS | 35.0% | |
| ! | GGATTAATGAGGCGTTTAAT+TGG | - | chr1_2:5056661-5056680 | Msa0051000:CDS | 35.0% |
| GTTTAATTGGGTGCATACAA+TGG | - | chr1_2:5056674-5056693 | Msa0051000:CDS | 35.0% | |
| GTGCATACAATGGTAGAATA+TGG | - | chr1_2:5056684-5056703 | Msa0051000:CDS | 35.0% | |
| ! | GGGAATTATGAACTTGTTCA+TGG | - | chr1_2:5056761-5056780 | Msa0051000:CDS | 35.0% |
| TCAGGTTTGACAAAATGGTT+TGG | - | chr1_2:5056909-5056928 | Msa0051000:CDS | 35.0% | |
| !! | ATTGTTGGTGGCTATGTTAA+TGG | - | chr1_2:5056984-5057003 | Msa0051000:CDS | 35.0% |
| ATCTATTGGTGCATTACTCA+GGG | + | chr1_2:5057036-5057055 | Msa0051010:intron | 35.0% | |
| GAATATGGAACTCCATCTAT+TGG | + | chr1_2:5057050-5057069 | Msa0051010:intron | 35.0% | |
| !! | TATGGCTCTAAGAACTTGTT+AGG | - | chr1_2:5057143-5057162 | Msa0051000:CDS | 35.0% |
| TGGCCTAAAGTTACAAACAT+TGG | - | chr1_2:5057217-5057236 | Msa0051000:CDS | 35.0% | |
| CCACCAATGTTTGTAACTTT+AGG | + | chr1_2:5057223-5057242 | Msa0051010:intron | 35.0% | |
| CCTAAAGTTACAAACATTGG+TGG | - | chr1_2:5057220-5057239 | Msa0051000:CDS | 35.0% | |
| ATGACTCATCTATTGATGTC+AGG | - | chr1_2:5057260-5057279 | Msa0051000:CDS | 35.0% | |
| TGACTCATCTATTGATGTCA+GGG | - | chr1_2:5057261-5057280 | Msa0051000:CDS | 35.0% | |
| GCAATGTTTCACTTCTAACA+TGG | - | chr1_2:5057334-5057353 | Msa0051000:CDS | 35.0% | |
| !!! | GTGTTTTTGATTTCAACCGT+TGG | - | chr1_2:5057356-5057375 | Msa0051000:CDS | 35.0% |
| !! | ACTCTAAGGACCTTTTGATA+TGG | + | chr1_2:5057391-5057410 | Msa0051010:intron | 35.0% |
| !! | TGGATGTTTTATTGTCCATG+TGG | - | chr1_2:5057430-5057449 | Msa0051000:CDS | 35.0% |
| ATAAAGTAGCAACTTCCACA+TGG | + | chr1_2:5057448-5057467 | Msa0051010:intron | 35.0% | |
| TAAAATCAACCTTGTCCTCA+AGG | + | chr1_2:5057495-5057514 | Msa0051010:intron | 35.0% | |
| !! | GAGGACAAGGTTGATTTTAA+TGG | - | chr1_2:5057496-5057515 | Msa0051000:CDS | 35.0% |
| !! | GGACAAGGTTGATTTTAATG+GGG | - | chr1_2:5057498-5057517 | Msa0051000:CDS | 35.0% |
| !! | GACAAGGTTGATTTTAATGG+GGG | - | chr1_2:5057499-5057518 | Msa0051000:CDS | 35.0% |
| !! | ACAAGGTTGATTTTAATGGG+GGG | - | chr1_2:5057500-5057519 | Msa0051000:CDS | 35.0% |
| !! | GACTTGGCTTTGCTTATATT+TGG | + | chr1_2:5057540-5057559 | Msa0051010:intron | 35.0% |
| GTCACTTGATCCAACAATTA+AGG | - | chr1_2:5057602-5057621 | Msa0051000:CDS | 35.0% | |
| TCTTCTATAAAAGGGAGCAA+TGG | - | chr1_2:5057655-5057674 | Msa0051000:CDS | 35.0% | |
| CAATGGTTAACAAGAAGGAT+AGG | - | chr1_2:5057672-5057691 | Msa0051000:CDS | 35.0% | |
| ! | TTACACCATCCCAAACTTTT+TGG | - | chr1_2:5057889-5057908 | Msa0051000:CDS | 35.0% |
| CATTAATTACCGTGATGCTA+AGG | + | chr1_2:5058203-5058222 | Msa0051010:intron | 35.0% | |
| TACGTTAAATCTAGACTTCC+TGG | + | chr1_2:5058316-5058335 | Msa0051010:intron | 35.0% | |
| TACAGTGAGAGAATGGAATT+TGG | - | chr1_2:5058390-5058409 | Msa0051000:CDS | 35.0% | |
| ACAGTGAGAGAATGGAATTT+GGG | - | chr1_2:5058391-5058410 | Msa0051000:CDS | 35.0% | |
| ATGTGTTAGCTATGAATGGA+TGG | - | chr1_2:5058539-5058558 | Msa0051000:CDS | 35.0% | |
| TGAACGAAGAAGATAGAGAA+AGG | - | chr1_2:5058575-5058594 | Msa0051000:CDS | 35.0% | |
| GAACGAAGAAGATAGAGAAA+GGG | - | chr1_2:5058576-5058595 | Msa0051000:CDS | 35.0% | |
| AACGAAGAAGATAGAGAAAG+GGG | - | chr1_2:5058577-5058596 | Msa0051000:CDS | 35.0% | |
| AATTCTTGAGCTGTTGCAAG+AGG | - | chr1_2:5055045-5055064 | Msa0051000:CDS | 40.0% | |
| !! | ATGTTCCTCTATTGGTTCCA+CGG | + | chr1_2:5055128-5055147 | Msa0051010:CDS | 40.0% |
| !! | TGTGGTTTTCAGAAGAGCAT+TGG | - | chr1_2:5055310-5055329 | Msa0051000:intron | 40.0% |
| ! | AGATCGAAGCGTTCAAAAGA+CGG | - | chr1_2:5055387-5055406 | Msa0051000:intron | 40.0% |
| CGACGAAATTTCATTCGAAG+TGG | - | chr1_2:5055413-5055432 | Msa0051000:intron | 40.0% | |
| GAAATCAAACAAGGATGCCA+AGG | + | chr1_2:5055593-5055612 | Msa0051010:intron | 40.0% | |
| AGGACGAAGGAAATCAAACA+AGG | + | chr1_2:5055602-5055621 | Msa0051010:intron | 40.0% | |
| ! | TTTTATGTGTGTGAGGACGA+AGG | + | chr1_2:5055615-5055634 | Msa0051010:intron | 40.0% |
| !! | GTTGGTGGTAAGGAAATACA+CGG | - | chr1_2:5055997-5056016 | Msa0051000:intron | 40.0% |
| GGAATTCATGGTAACTTTGG+TGG | - | chr1_2:5056309-5056328 | Msa0051000:CDS | 40.0% | |
| CTTTCAATTCTGGTGACTCA+AGG | - | chr1_2:5056445-5056464 | Msa0051000:CDS | 40.0% | |
| CAATTAAAATGGCCACCTCA+TGG | + | chr1_2:5056503-5056522 | Msa0051010:intron | 40.0% | |
| CTTGGGTACAGAAATAGAAG+AGG | + | chr1_2:5056544-5056563 | Msa0051010:intron | 40.0% | |
| TGTACCCAAGATTCAGTTAG+TGG | - | chr1_2:5056554-5056573 | Msa0051000:CDS | 40.0% | |
| AAACGCCTCATTAATCCCAT+AGG | + | chr1_2:5056658-5056677 | Msa0051010:intron | 40.0% | |
| ACAAGTCCATAGATGCAACA+GGG | - | chr1_2:5056808-5056827 | Msa0051000:CDS | 40.0% | |
| ATCATTCCCTGTTGCATCTA+TGG | + | chr1_2:5056817-5056836 | Msa0051010:intron | 40.0% | |
| !!! | CTGTGGTAGTGGTGTTATTT+TGG | - | chr1_2:5056865-5056884 | Msa0051000:CDS | 40.0% |
| TGGCATCAGGTTTGACAAAA+TGG | - | chr1_2:5056904-5056923 | Msa0051000:CDS | 40.0% | |
| CATCTATTGGTGCATTACTC+AGG | + | chr1_2:5057037-5057056 | Msa0051010:intron | 40.0% | |
| CTGAGTAATGCACCAATAGA+TGG | - | chr1_2:5057035-5057054 | Msa0051000:CDS | 40.0% | |
| !! | CTAAGAACTTGTTAGGTGTG+AGG | - | chr1_2:5057150-5057169 | Msa0051000:CDS | 40.0% |
| !! | CTTGAGAAGTACCACTAGTT+TGG | - | chr1_2:5057184-5057203 | Msa0051000:CDS | 40.0% |
| ACTCTCATGAACCAAACTAG+TGG | + | chr1_2:5057198-5057217 | Msa0051010:intron | 40.0% | |
| ! | ACTAGTTTGGTTCATGAGAG+TGG | - | chr1_2:5057197-5057216 | Msa0051000:CDS | 40.0% |
| CATCTATTGATGTCAGGGTT+AGG | - | chr1_2:5057266-5057285 | Msa0051000:CDS | 40.0% | |
| GGAACATATCAAGACACCAA+AGG | - | chr1_2:5057287-5057306 | Msa0051000:CDS | 40.0% | |
| TTGCATGCAAACAGAACCTT+TGG | + | chr1_2:5057306-5057325 | Msa0051010:intron | 40.0% | |
| !! | GTCCTTAGAGTTCAAGTTGT+GGG | - | chr1_2:5057400-5057419 | Msa0051000:CDS | 40.0% |
| ATCCCACAACTTGAACTCTA+AGG | + | chr1_2:5057405-5057424 | Msa0051010:intron | 40.0% | |
| TGGACAATAAAACATCCACC+AGG | + | chr1_2:5057428-5057447 | Msa0051010:intron | 40.0% | |
| CAAGGTTGGAGTCAAGATAA+TGG | + | chr1_2:5057477-5057496 | Msa0051010:intron | 40.0% | |
| TTATCTTGACTCCAACCTTG+AGG | - | chr1_2:5057477-5057496 | Msa0051000:CDS | 40.0% | |
| GCAAAGCCAAGTCATTAAAG+TGG | - | chr1_2:5057547-5057566 | Msa0051000:CDS | 40.0% | |
| !! | CTCTACTAGAGAGTACCAAA+GGG | + | chr1_2:5057730-5057749 | Msa0051010:intron | 40.0% |
| !! | ACTCTACTAGAGAGTACCAA+AGG | + | chr1_2:5057731-5057750 | Msa0051010:intron | 40.0% |
| GAAAGGAATAAAAGCAGTGG+CGG | + | chr1_2:5057922-5057941 | Msa0051010:intron | 40.0% | |
| !!! | ACGGATGGAGTGTTTTAGAA+AGG | + | chr1_2:5057939-5057958 | Msa0051010:intron | 40.0% |
| TGTTGTTCTTCAGGAAGGAA+CGG | + | chr1_2:5058236-5058255 | Msa0051010:intron | 40.0% | |
| ! | TATTGCTCGTGTTGTTCTTC+AGG | + | chr1_2:5058245-5058264 | Msa0051010:intron | 40.0% |
| TTCGCTGCTCAAACTATCAT+CGG | + | chr1_2:5058289-5058308 | Msa0051010:intron | 40.0% | |
| GTTAAATCTAGACTTCCTGG+TGG | + | chr1_2:5058313-5058332 | Msa0051010:intron | 40.0% | |
| !!! | TGTTTTGAGGTCAGCGATTT+CGG | - | chr1_2:5058336-5058355 | Msa0051000:CDS | 40.0% |
| TTGCAGTTACAGTGAGAGAA+TGG | - | chr1_2:5058383-5058402 | Msa0051000:CDS | 40.0% | |
| !!! | GGTTGGTTTGGAAGAGATTT+TGG | - | chr1_2:5058453-5058472 | Msa0051000:CDS | 40.0% |
| !! | TGGTTTGGAAGAGATTTTGG+AGG | - | chr1_2:5058456-5058475 | Msa0051000:CDS | 40.0% |
| GGAAGATGTGAGAGATGATA+AGG | - | chr1_2:5058498-5058517 | Msa0051000:CDS | 40.0% | |
| GTTAGCTATGAATGGATGGA+TGG | - | chr1_2:5058543-5058562 | Msa0051000:CDS | 40.0% | |
| !! | GAATTTTGGCACACGACTCT+CGG | + | chr1_2:5055030-5055049 | None:intergenic | 45.0% |
| ! | GCAACAACTTCGTCTGAAGT+CGG | + | chr1_2:5055103-5055122 | Msa0051010:CDS | 45.0% |
| TCTTCACCTGGGATGATTCA+CGG | + | chr1_2:5055159-5055178 | Msa0051010:CDS | 45.0% | |
| ! | CTCTTCTGAAAACCACACTC+TGG | + | chr1_2:5055307-5055326 | Msa0051010:intron | 45.0% |
| ! | TTTTGAACGCTTCGATCTGG+CGG | + | chr1_2:5055385-5055404 | Msa0051010:CDS | 45.0% |
| ! | GTCTTTTGAACGCTTCGATC+TGG | + | chr1_2:5055388-5055407 | Msa0051010:intron | 45.0% |
| !! | ACTGCTCTGGAATTGTCATC+GGG | + | chr1_2:5055472-5055491 | Msa0051010:intron | 45.0% |
| !! | CACTGCTCTGGAATTGTCAT+CGG | + | chr1_2:5055473-5055492 | Msa0051010:intron | 45.0% |
| CAGTTTGTCCACTACCTGTT+TGG | - | chr1_2:5055527-5055546 | Msa0051000:intron | 45.0% | |
| !! | GCTTGGGCTGTTTTACTTCA+TGG | - | chr1_2:5055928-5055947 | Msa0051000:intron | 45.0% |
| CCACAATTACTCAGCAAGGT+GGG | + | chr1_2:5055961-5055980 | Msa0051010:intron | 45.0% | |
| CCACCTTGCTGAGTAATTGT+GGG | - | chr1_2:5055959-5055978 | Msa0051000:intron | 45.0% | |
| CACCTTGCTGAGTAATTGTG+GGG | - | chr1_2:5055960-5055979 | Msa0051000:intron | 45.0% | |
| !! | AATACACGGTGTAATGGGTG+AGG | - | chr1_2:5056011-5056030 | Msa0051000:intron | 45.0% |
| ATCAAACAGTGACGCAGTTC+AGG | - | chr1_2:5056068-5056087 | Msa0051000:intron | 45.0% | |
| ! | TTTGGTGGTCTCTCTTGTCA+TGG | - | chr1_2:5056324-5056343 | Msa0051000:CDS | 45.0% |
| TGGGAAAATGCCTAGCCTAT+GGG | - | chr1_2:5056640-5056659 | Msa0051000:CDS | 45.0% | |
| CCTCATTAATCCCATAGGCT+AGG | + | chr1_2:5056653-5056672 | Msa0051010:intron | 45.0% | |
| CCTAGCCTATGGGATTAATG+AGG | - | chr1_2:5056650-5056669 | Msa0051000:CDS | 45.0% | |
| CTGTTGCATCTATGGACTTG+TGG | + | chr1_2:5056809-5056828 | Msa0051010:intron | 45.0% | |
| CACAAGTCCATAGATGCAAC+AGG | - | chr1_2:5056807-5056826 | Msa0051000:CDS | 45.0% | |
| ! | CCACAGCTTTAGTGAGACTT+GGG | + | chr1_2:5056851-5056870 | Msa0051010:intron | 45.0% |
| ! | ACCACAGCTTTAGTGAGACT+TGG | + | chr1_2:5056852-5056871 | Msa0051010:intron | 45.0% |
| TCTCACTAAAGCTGTGGTAG+TGG | - | chr1_2:5056854-5056873 | Msa0051000:CDS | 45.0% | |
| TTGGATGAGACTACGGCAAA+TGG | - | chr1_2:5056884-5056903 | Msa0051000:CDS | 45.0% | |
| !! | ATGAAATAGGTGGACTGTGC+AGG | + | chr1_2:5057097-5057116 | Msa0051010:intron | 45.0% |
| !! | GGTCCTTAGAGTTCAAGTTG+TGG | - | chr1_2:5057399-5057418 | Msa0051000:CDS | 45.0% |
| ATCAACCTTGTCCTCAAGGT+TGG | + | chr1_2:5057491-5057510 | Msa0051010:intron | 45.0% | |
| GGGAGCAATGGTTAACAAGA+AGG | - | chr1_2:5057667-5057686 | Msa0051000:CDS | 45.0% | |
| CCAGACCAAAAAGTTTGGGA+TGG | + | chr1_2:5057897-5057916 | Msa0051010:intron | 45.0% | |
| !! | CCATCCCAAACTTTTTGGTC+TGG | - | chr1_2:5057894-5057913 | Msa0051000:CDS | 45.0% |
| GGAGCCAGACCAAAAAGTTT+GGG | + | chr1_2:5057901-5057920 | Msa0051010:intron | 45.0% | |
| GTTGTTCTTCAGGAAGGAAC+GGG | + | chr1_2:5058235-5058254 | Msa0051010:intron | 45.0% | |
| ! | AATAGCAGTTTTCCGACGAC+CGG | - | chr1_2:5058261-5058280 | Msa0051000:CDS | 45.0% |
| GCTCAAACTATCATCGGTAC+CGG | + | chr1_2:5058283-5058302 | Msa0051010:intron | 45.0% | |
| !!! | GTTTTGAGGTCAGCGATTTC+GGG | - | chr1_2:5058337-5058356 | Msa0051000:CDS | 45.0% |
| !! | GGAAGAGATTTTGGAGGAGA+AGG | - | chr1_2:5058462-5058481 | Msa0051000:CDS | 45.0% |
| TGTTACCCGTGAATCATCCC+AGG | - | chr1_2:5055150-5055169 | Msa0051000:CDS | 50.0% | |
| CTTCACCTGGGATGATTCAC+GGG | + | chr1_2:5055158-5055177 | Msa0051010:CDS | 50.0% | |
| ACTTGACGCGGATACGAAGA+AGG | - | chr1_2:5055237-5055256 | Msa0051000:intron | 50.0% | |
| AACATCGCAACACCAGAGTG+TGG | - | chr1_2:5055292-5055311 | Msa0051000:intron | 50.0% | |
| !! | GAGCATTGGAATGATCGCAG+CGG | - | chr1_2:5055324-5055343 | Msa0051000:intron | 50.0% |
| !! | CTCTGGAATTGTCATCGGGT+GGG | + | chr1_2:5055468-5055487 | Msa0051010:intron | 50.0% |
| CGATGACAATTCCAGAGCAG+TGG | - | chr1_2:5055471-5055490 | Msa0051000:intron | 50.0% | |
| AAGTATGGAGTCCACTGCTC+TGG | + | chr1_2:5055485-5055504 | Msa0051010:intron | 50.0% | |
| CCCACCTTGCTGAGTAATTG+TGG | - | chr1_2:5055958-5055977 | Msa0051000:intron | 50.0% | |
| CCCACAATTACTCAGCAAGG+TGG | + | chr1_2:5055962-5055981 | Msa0051010:intron | 50.0% | |
| CACCCCACAATTACTCAGCA+AGG | + | chr1_2:5055965-5055984 | Msa0051010:intron | 50.0% | |
| !! | TGTAATGGGTGAGGAAGGTC+TGG | - | chr1_2:5056020-5056039 | Msa0051000:intron | 50.0% |
| TTCTGGTGACTCAAGGCTGA+TGG | - | chr1_2:5056452-5056471 | Msa0051000:CDS | 50.0% | |
| TCTGGTGACTCAAGGCTGAT+GGG | - | chr1_2:5056453-5056472 | Msa0051000:CDS | 50.0% | |
| AATGGCCACCTCATGGAGTT+TGG | + | chr1_2:5056496-5056515 | Msa0051010:intron | 50.0% | |
| ! | CATAGGCTAGGCATTTTCCC+AGG | + | chr1_2:5056641-5056660 | Msa0051010:intron | 50.0% |
| CTGGGAAAATGCCTAGCCTA+TGG | - | chr1_2:5056639-5056658 | Msa0051000:CDS | 50.0% | |
| CCCAAGTCTCACTAAAGCTG+TGG | - | chr1_2:5056848-5056867 | Msa0051000:CDS | 50.0% | |
| AGACTACGGCAAATGGCATC+AGG | - | chr1_2:5056891-5056910 | Msa0051000:CDS | 50.0% | |
| !! | GAGTTCAAGTTGTGGGATCC+TGG | - | chr1_2:5057407-5057426 | Msa0051000:CDS | 50.0% |
| !! | TTCAAGTTGTGGGATCCTGG+TGG | - | chr1_2:5057410-5057429 | Msa0051000:CDS | 50.0% |
| TGACTCCAACCTTGAGGACA+AGG | - | chr1_2:5057483-5057502 | Msa0051000:CDS | 50.0% | |
| GTCTCTTCTCTCTCTCCCTT+TGG | - | chr1_2:5057712-5057731 | Msa0051000:CDS | 50.0% | |
| CGGAGCCAGACCAAAAAGTT+TGG | + | chr1_2:5057902-5057921 | Msa0051010:intron | 50.0% | |
| ! | GCTCGTGTTGTTCTTCAGGA+AGG | + | chr1_2:5058241-5058260 | Msa0051010:intron | 50.0% |
| GAATTTGGGAGAGCGAGAGA+GGG | - | chr1_2:5058405-5058424 | Msa0051000:CDS | 50.0% | |
| ! | GAGAGAGAGAGTGGTTGGTT+TGG | - | chr1_2:5058441-5058460 | Msa0051000:CDS | 50.0% |
| AGGAGAAGGAGAGTGAAGAG+AGG | - | chr1_2:5058476-5058495 | Msa0051000:CDS | 50.0% | |
| GGAGAAGGAGAGTGAAGAGA+GGG | - | chr1_2:5058477-5058496 | Msa0051000:CDS | 50.0% | |
| AGAGGAGATAGACGCTACCG+AGG | - | chr1_2:5055063-5055082 | Msa0051000:CDS | 55.0% | |
| AGACGAAGTTGTTGCGTCCG+TGG | - | chr1_2:5055108-5055127 | Msa0051000:CDS | 55.0% | |
| TGCGTCCGTGGAACCAATAG+AGG | - | chr1_2:5055120-5055139 | Msa0051000:CDS | 55.0% | |
| !! | CTTCGATCTGGCGGTTTTGG+TGG | + | chr1_2:5055376-5055395 | Msa0051010:CDS | 55.0% |
| ! | ACGCTTCGATCTGGCGGTTT+TGG | + | chr1_2:5055379-5055398 | Msa0051010:CDS | 55.0% |
| GAATTGTCATCGGGTGGGTG+TGG | + | chr1_2:5055463-5055482 | Msa0051010:intron | 55.0% | |
| !! | GCTCTGGAATTGTCATCGGG+TGG | + | chr1_2:5055469-5055488 | Msa0051010:intron | 55.0% |
| !! | CACGGTGTAATGGGTGAGGA+AGG | - | chr1_2:5056015-5056034 | Msa0051000:intron | 55.0% |
| TGACTCAAGGCTGATGGGAG+TGG | - | chr1_2:5056458-5056477 | Msa0051000:CDS | 55.0% | |
| CAAGGCTGATGGGAGTGGAA+TGG | - | chr1_2:5056463-5056482 | Msa0051000:CDS | 55.0% | |
| GCTGAGTGCCAAACTCCATG+AGG | - | chr1_2:5056485-5056504 | Msa0051000:CDS | 55.0% | |
| GAGTGCCAAACTCCATGAGG+TGG | - | chr1_2:5056488-5056507 | Msa0051000:CDS | 55.0% | |
| !! | CTATCATCGGTACCGGTCGT+CGG | + | chr1_2:5058276-5058295 | Msa0051010:intron | 55.0% |
| GTTTGAGCAGCGAATCCACC+AGG | - | chr1_2:5058295-5058314 | Msa0051000:CDS | 55.0% | |
| !! | GAGGTCAGCGATTTCGGGTT+CGG | - | chr1_2:5058342-5058361 | Msa0051000:CDS | 55.0% |
| GGAATTTGGGAGAGCGAGAG+AGG | - | chr1_2:5058404-5058423 | Msa0051000:CDS | 55.0% | |
| CGAGAGAGGGAGAAGGTTCT+GGG | - | chr1_2:5058418-5058437 | Msa0051000:CDS | 55.0% | |
| GAGAGAGGGAGAAGGTTCTG+GGG | - | chr1_2:5058419-5058438 | Msa0051000:CDS | 55.0% | |
| ! | GGTGGAGGCATGCTGCATTC+CGG | + | chr1_2:5055352-5055371 | Msa0051010:intron | 60.0% |
| !! | CGATCTGGCGGTTTTGGTGG+CGG | + | chr1_2:5055373-5055392 | Msa0051010:CDS | 60.0% |
| GTGGTGGTCGAAGCATGGTG+AGG | + | chr1_2:5055441-5055460 | Msa0051010:intron | 60.0% | |
| !! | GTGTGGTGGTGGTCGAAGCA+TGG | + | chr1_2:5055446-5055465 | Msa0051010:intron | 60.0% |
| TTGTCATCGGGTGGGTGTGG+TGG | + | chr1_2:5055460-5055479 | Msa0051010:intron | 60.0% | |
| !! | TCAGCGATTTCGGGTTCGGC+AGG | - | chr1_2:5058346-5058365 | Msa0051000:CDS | 60.0% |
| !! | CAGCGATTTCGGGTTCGGCA+GGG | - | chr1_2:5058347-5058366 | Msa0051000:CDS | 60.0% |
| !! | AGCGATTTCGGGTTCGGCAG+GGG | - | chr1_2:5058348-5058367 | Msa0051000:CDS | 60.0% |
| GCGAGAGAGGGAGAAGGTTC+TGG | - | chr1_2:5058417-5058436 | Msa0051000:CDS | 60.0% | |
| !! | GGTTCTGGGGAGAGAGAGAG+TGG | - | chr1_2:5058432-5058451 | Msa0051000:CDS | 60.0% |
| CTGGGGAGAGAGAGAGTGGT+TGG | - | chr1_2:5058436-5058455 | Msa0051000:CDS | 60.0% | |
| !! | CGGAAGTGCTTCGCTCGCCT+CGG | + | chr1_2:5055083-5055102 | Msa0051010:CDS | 65.0% |
| TGGAATGATCGCAGCGGCGC+CGG | - | chr1_2:5055330-5055349 | Msa0051000:intron | 65.0% | |
| !!! | TCTGGCGGTTTTGGTGGCGG+TGG | + | chr1_2:5055370-5055389 | Msa0051010:CDS | 65.0% |
| TCATCGGGTGGGTGTGGTGG+TGG | + | chr1_2:5055457-5055476 | Msa0051010:intron | 65.0% | |
| GGGAGAGCGAGAGAGGGAGA+AGG | - | chr1_2:5058411-5058430 | Msa0051000:CDS | 65.0% | |
| !!! | GGCGGTTTTGGTGGCGGTGG+AGG | + | chr1_2:5055367-5055386 | Msa0051010:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 5055004 | 5058603 | 5055004 | ID=Msa0051000;Name=Msa0051000 |
| chr1_2 | mRNA | 5055004 | 5058603 | 5055004 | ID=Msa0051000-mRNA-1;Parent=Msa0051000;Name=Msa0051000-mRNA-1;_AED=0.25;_eAED=0.29;_QI=0|0|0|0.5|1|1|2|0|846 |
| chr1_2 | exon | 5056299 | 5058603 | 5056299 | ID=Msa0051000-mRNA-1:exon:1440;Parent=Msa0051000-mRNA-1 |
| chr1_2 | exon | 5055004 | 5055239 | 5055004 | ID=Msa0051000-mRNA-1:exon:1439;Parent=Msa0051000-mRNA-1 |
| chr1_2 | CDS | 5056299 | 5058603 | 5056299 | ID=Msa0051000-mRNA-1:cds;Parent=Msa0051000-mRNA-1 |
| chr1_2 | CDS | 5055004 | 5055239 | 5055004 | ID=Msa0051000-mRNA-1:cds;Parent=Msa0051000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
