AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0101520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101520 MtrunA17_Chr1g0154681 99.603 252 1 0 1 252 1 252 0.0 521
Msa0101520 MtrunA17_Chr1g0162711 70.000 240 67 2 1 240 1 235 9.85e-123 349
Msa0101520 MtrunA17_Chr1g0149791 57.216 194 75 1 39 232 14 199 4.63e-81 242
Msa0101520 MtrunA17_Chr3g0137121 64.024 164 59 0 39 202 14 177 2.89e-80 240
Msa0101520 MtrunA17_Chr4g0055821 64.000 150 54 0 41 190 21 170 7.02e-74 224
Msa0101520 MtrunA17_Chr5g0399541 62.162 148 56 0 41 188 22 169 7.84e-72 219
Msa0101520 MtrunA17_Chr4g0002531 54.595 185 80 2 25 206 10 193 3.18e-69 213
Msa0101520 MtrunA17_Chr4g0063261 58.385 161 66 1 44 203 31 191 8.63e-68 209
Msa0101520 MtrunA17_Chr2g0306871 48.352 182 76 1 49 212 33 214 8.13e-65 201
Msa0101520 MtrunA17_Chr1g0202701 34.965 143 74 5 44 170 4 143 2.46e-18 81.3
Msa0101520 MtrunA17_Chr6g0468771 33.103 145 81 4 42 171 2 145 1.41e-17 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101520 AT1G47740.1 71.875 256 63 4 1 252 29 279 7.08e-127 361
Msa0101520 AT1G47740.2 71.875 256 63 4 1 252 29 279 7.08e-127 361
Msa0101520 AT1G47740.3 71.875 256 63 4 1 252 29 279 7.08e-127 361
Msa0101520 AT5G25170.1 63.855 166 58 1 39 202 15 180 5.13e-77 232
Msa0101520 AT1G80690.1 56.044 182 79 1 28 209 2 182 4.97e-74 225
Msa0101520 AT2G25190.1 60.736 163 64 0 40 202 15 177 2.42e-73 224
Msa0101520 AT5G47310.1 64.828 145 51 0 42 186 28 172 9.30e-73 223
Msa0101520 AT1G80690.2 54.839 186 79 2 28 209 2 186 4.81e-72 220
Msa0101520 AT4G17486.1 58.974 156 64 0 33 188 17 172 1.35e-71 219
Msa0101520 AT4G31980.1 59.756 164 58 2 27 187 7 165 2.25e-63 210
Msa0101520 AT4G17486.2 60.145 138 55 0 33 170 17 154 2.17e-62 194
Msa0101520 AT5G25170.2 58.519 135 54 1 70 202 2 136 2.69e-53 170
Msa0101520 AT4G25680.1 32.639 144 87 4 28 169 8 143 4.06e-16 75.9
Msa0101520 AT4G25660.1 32.639 144 87 4 28 169 8 143 9.63e-16 75.1

Find 77 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAACATGCCAAGATTTA+AGG 0.115934 1_3:+8179064 None:intergenic
GATGATAAACAGCCTCTTAA+AGG 0.165224 1_3:+8176303 None:intergenic
GAAGAAATTCTTAGTGCTTC+TGG 0.179953 1_3:+8176456 None:intergenic
GTTTGTTATTGCGTAGTTTA+TGG 0.182070 1_3:-8179159 Msa0101520:five_prime_UTR
TTAGGGACATCCGATAAAAT+TGG 0.248199 1_3:+8176045 None:intergenic
ATTGTGCCTCTTCATTTAAA+AGG 0.274662 1_3:-8177848 Msa0101520:CDS
ACAATAACAATAGTCCCTTT+AGG 0.301623 1_3:+8176027 None:intergenic
GACATATGCTACAAGCTTAC+AGG 0.302536 1_3:-8177134 Msa0101520:CDS
CTTTGAATCCTGTTCAGGTT+AGG 0.313137 1_3:-8177238 Msa0101520:CDS
CTGTCTTTGTCTCTCTCTAA+TGG 0.319836 1_3:-8179008 Msa0101520:five_prime_UTR
TACATCTTTGAATCCTGTTC+AGG 0.336718 1_3:-8177243 Msa0101520:CDS
CTATCATGTGCCTCATGATT+AGG 0.345697 1_3:+8176420 None:intergenic
ATCTATTAACCGTTCCTTCA+AGG 0.354021 1_3:-8176253 Msa0101520:CDS
CAATTCCAACTTGGGTAAAT+CGG 0.354741 1_3:-8177106 Msa0101520:CDS
CAATAACAATAGTCCCTTTA+GGG 0.367363 1_3:+8176028 None:intergenic
TCATACACATTAAGATAAAC+TGG 0.373779 1_3:+8177755 None:intergenic
CCAATACACATAACCATTCA+TGG 0.376837 1_3:+8177724 None:intergenic
TGTTCAGGTTAGGGAGTTCA+TGG 0.381216 1_3:-8177228 Msa0101520:CDS
AAACAGTTACCTTTCCTTGA+AGG 0.382205 1_3:+8176239 None:intergenic
TTTGAATCCTGTTCAGGTTA+GGG 0.385241 1_3:-8177237 Msa0101520:CDS
TTTCTACAATCACCTTTAAG+AGG 0.386624 1_3:-8176315 Msa0101520:CDS
TGTTTCTTTGTACCTTGAAA+AGG 0.387538 1_3:-8176221 Msa0101520:three_prime_UTR
ATTATGTGAGTGTTCGCCTT+AGG 0.389160 1_3:-8177909 Msa0101520:five_prime_UTR
TTGTAGAAACAATGAAGATT+TGG 0.406339 1_3:+8176329 None:intergenic
CATGGTGTAGAATATGCATT+TGG 0.412888 1_3:-8177356 Msa0101520:CDS
CAGGGAAATCAATTCCAACT+TGG 0.414012 1_3:-8177115 Msa0101520:CDS
CATGAATGGTTATGTGTATT+GGG 0.415496 1_3:-8177723 Msa0101520:CDS
TATGTGTATTGGGCCGGTCT+TGG 0.423862 1_3:-8177713 Msa0101520:CDS
CCATGAATGGTTATGTGTAT+TGG 0.424620 1_3:-8177724 Msa0101520:CDS
ATGAACTCCCTAACCTGAAC+AGG 0.425276 1_3:+8177230 None:intergenic
CTAAACTAAACCTTAAATCT+TGG 0.426087 1_3:-8179074 Msa0101520:five_prime_UTR
GCAAGCCGATTTACCCAAGT+TGG 0.426198 1_3:+8177101 None:intergenic
AATGCCCAGGCTTCAAGTTC+AGG 0.427519 1_3:-8177286 Msa0101520:CDS
GTTTCTTTGTACCTTGAAAA+GGG 0.454647 1_3:-8176220 Msa0101520:three_prime_UTR
TTCAATTTCATCTTTCCCTA+AGG 0.460939 1_3:+8177893 None:intergenic
TTATGTGAGTGTTCGCCTTA+GGG 0.463750 1_3:-8177908 Msa0101520:five_prime_UTR
GACTTCCTGAACTTGAAGCC+TGG 0.467872 1_3:+8177281 None:intergenic
TATCATCAAAGTGGCCATCA+TGG 0.473681 1_3:-8176287 Msa0101520:CDS
GCACTAAGAATTTCTTCTGT+GGG 0.486160 1_3:-8176450 Msa0101520:CDS
TTATTGAGGTGTAACATTTG+CGG 0.489640 1_3:-8175971 Msa0101520:three_prime_UTR
TATTGCAAAATACTCCTCTC+TGG 0.491556 1_3:+8179191 None:intergenic
ATGAAATTGAAGTCTAAGAA+AGG 0.507796 1_3:-8177881 Msa0101520:CDS
ACTTCCTGAACTTGAAGCCT+GGG 0.521778 1_3:+8177282 None:intergenic
GATTTGCTCAATTCCCATGA+TGG 0.523695 1_3:+8176273 None:intergenic
AATTGAAGTCTAAGAAAGGA+TGG 0.524868 1_3:-8177877 Msa0101520:CDS
GTTGAACCTCGGCAATGCCC+AGG 0.525057 1_3:-8177299 Msa0101520:CDS
ATCTATCACTCTGGTGTCGA+AGG 0.531982 1_3:-8177689 Msa0101520:intron
ATCATCAAAGTGGCCATCAT+GGG 0.535412 1_3:-8176286 Msa0101520:CDS
TTAACCGTTCCTTCAAGGAA+AGG 0.547458 1_3:-8176248 Msa0101520:CDS
AGAGAGAGTGTTGCTCAAAA+CGG 0.548157 1_3:+8179029 None:intergenic
AGGGAAATCAATTCCAACTT+GGG 0.551036 1_3:-8177114 Msa0101520:CDS
GGTCTTGGTATCTATCACTC+TGG 0.557082 1_3:-8177698 Msa0101520:CDS
GTAAATCGGCTTGCTAAGCT+AGG 0.560765 1_3:-8177092 Msa0101520:intron
TATGGTCTATGACGTTGACA+TGG 0.563651 1_3:-8179141 Msa0101520:five_prime_UTR
TTCAGGAAGTCGATATTCAT+CGG 0.566691 1_3:-8177269 Msa0101520:CDS
CAATACACATAACCATTCAT+GGG 0.567668 1_3:+8177725 None:intergenic
GTTACCTTTCCTTGAAGGAA+CGG 0.569265 1_3:+8176244 None:intergenic
TCATTTAAAAGGAAAATCAC+CGG 0.579187 1_3:-8177837 Msa0101520:CDS
TTGAAGCCTGGGCATTGCCG+AGG 0.584621 1_3:+8177293 None:intergenic
CTATGACGTTGACATGGGAC+AGG 0.589325 1_3:-8179135 Msa0101520:five_prime_UTR
AATTCAGCTAGCCATGGACC+TGG 0.589659 1_3:-8177785 Msa0101520:CDS
GTTGACATGGGACAGGACAA+TGG 0.591561 1_3:-8179128 Msa0101520:five_prime_UTR
AATGGTTATGTGTATTGGGC+CGG 0.593181 1_3:-8177719 Msa0101520:CDS
ACTTACAAACAGACAAGAGA+TGG 0.594126 1_3:+8176125 None:intergenic
TATGACTTGACACCCATGAA+TGG 0.598526 1_3:-8177737 Msa0101520:CDS
ACATATGCTACAAGCTTACA+GGG 0.604015 1_3:-8177133 Msa0101520:CDS
ATGGTCTATGACGTTGACAT+GGG 0.609477 1_3:-8179140 Msa0101520:five_prime_UTR
AGCACTAAGAATTTCTTCTG+TGG 0.616876 1_3:-8176451 Msa0101520:CDS
GAGGCTGTTTATCATCAAAG+TGG 0.631803 1_3:-8176296 Msa0101520:CDS
CACTAAGAATTTCTTCTGTG+GGG 0.635774 1_3:-8176449 Msa0101520:CDS
AGAGTGATAGATACCAAGAC+CGG 0.635910 1_3:+8177700 None:intergenic
AAAGTAAATTCAGCTAGCCA+TGG 0.644369 1_3:-8177791 Msa0101520:CDS
AATAAGGGAGAGAGCCAGAG+AGG 0.645844 1_3:-8179205 None:intergenic
TGTTGCTCAAAACGGTGAAG+TGG 0.655858 1_3:+8179037 None:intergenic
GGGGCATGATCCTAATCATG+AGG 0.671130 1_3:-8176430 Msa0101520:CDS
GCTCATGACTACCCAACAAG+CGG 0.680057 1_3:-8177332 Msa0101520:CDS
TGTGAGTGTGCAAACTACAA+CGG 0.683483 1_3:-8177203 Msa0101520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTAATTATTTTAT+TGG - chr1_3:8179078-8179097 Msa0101520:five_prime_UTR 0.0%
!! TTAAAAATAAATAACTTACT+TGG + chr1_3:8177166-8177185 None:intergenic 10.0%
!! ATAATGTTAACATAAAAAAT+AGG - chr1_3:8177192-8177211 Msa0101520:CDS 10.0%
!!! TTCTACACAATTTTTTTATT+TGG - chr1_3:8176534-8176553 Msa0101520:intron 15.0%
!! AGTATAATAAGAATCTATTA+GGG - chr1_3:8176621-8176640 Msa0101520:intron 15.0%
!! AAACTAAAATTTCAACAATT+TGG + chr1_3:8176785-8176804 None:intergenic 15.0%
!! TTAATTAACAATATTAGCAT+TGG + chr1_3:8178504-8178523 None:intergenic 15.0%
!!! TTTTTGGATATTATTTATTG+AGG - chr1_3:8179174-8179193 Msa0101520:five_prime_UTR 15.0%
!! TGTTATAAACAAGAAATGAA+GGG + chr1_3:8176501-8176520 None:intergenic 20.0%
!! GTCAAAAAAAAAAAGAACAA+TGG + chr1_3:8176566-8176585 None:intergenic 20.0%
!! CAGTATAATAAGAATCTATT+AGG - chr1_3:8176620-8176639 Msa0101520:intron 20.0%
!!! TACAAGATCTTTTAAAATCT+AGG - chr1_3:8176666-8176685 Msa0101520:intron 20.0%
!! TAAAATTTCAACAATTTGGT+TGG + chr1_3:8176781-8176800 None:intergenic 20.0%
!!! TTGAGACTAAATTAATTTGT+AGG + chr1_3:8176887-8176906 None:intergenic 20.0%
!!! GACAAATGAACTATTTTTAA+GGG + chr1_3:8177069-8177088 None:intergenic 20.0%
!!! AGTCAAATGTTTTTAATGAT+CGG + chr1_3:8177658-8177677 None:intergenic 20.0%
!! ATTGTGAAATTGAATAAGAA+AGG - chr1_3:8178457-8178476 Msa0101520:intron 20.0%
!!! CTCTTGTATTATTATTTTTG+AGG - chr1_3:8179004-8179023 Msa0101520:five_prime_UTR 20.0%
!!! TTGTATCATTCCAATTTTAT+CGG - chr1_3:8179104-8179123 Msa0101520:five_prime_UTR 20.0%
!! ATCCAAAAATGACAATTTAA+CGG + chr1_3:8179163-8179182 None:intergenic 20.0%
! CTAAACTAAACCTTAAATCT+TGG - chr1_3:8176085-8176104 Msa0101520:three_prime_UTR 25.0%
! CATGAAAAAAAAACTGAGTT+AGG + chr1_3:8176458-8176477 None:intergenic 25.0%
!!! CTCAGTTTTTTTTTCATGTT+TGG - chr1_3:8176460-8176479 Msa0101520:CDS 25.0%
! GTTATAAACAAGAAATGAAG+GGG + chr1_3:8176500-8176519 None:intergenic 25.0%
! CTGTTATAAACAAGAAATGA+AGG + chr1_3:8176502-8176521 None:intergenic 25.0%
!! CTTAGAACACTGAAATATTT+TGG + chr1_3:8176588-8176607 None:intergenic 25.0%
! TCTTGTAAACAATTTCCATA+TGG + chr1_3:8176653-8176672 None:intergenic 25.0%
!!! AAGATCTTTTAAAATCTAGG+AGG - chr1_3:8176669-8176688 Msa0101520:intron 25.0%
!!! AGATCTTTTAAAATCTAGGA+GGG - chr1_3:8176670-8176689 Msa0101520:intron 25.0%
!!! TGTTGAAATTTTAGTTTGAC+AGG - chr1_3:8176788-8176807 Msa0101520:intron 25.0%
! AGATGTTAAATTGACATGTT+TGG - chr1_3:8176811-8176830 Msa0101520:intron 25.0%
!!! TCAGCTAGAATTTAAGTTTT+TGG - chr1_3:8176861-8176880 Msa0101520:intron 25.0%
! TTACGCTTTCATATAAAAGT+AGG + chr1_3:8176926-8176945 None:intergenic 25.0%
!!! AAATGAACTATTTTTAAGGG+AGG + chr1_3:8177066-8177085 None:intergenic 25.0%
!!! CGACAAATGAACTATTTTTA+AGG + chr1_3:8177070-8177089 None:intergenic 25.0%
! ATGAAATTGAAGTCTAAGAA+AGG - chr1_3:8177278-8177297 Msa0101520:CDS 25.0%
!! GATTTTCCTTTTAAATGAAG+AGG + chr1_3:8177320-8177339 None:intergenic 25.0%
! TCATTTAAAAGGAAAATCAC+CGG - chr1_3:8177322-8177341 Msa0101520:CDS 25.0%
! TCATACACATTAAGATAAAC+TGG + chr1_3:8177407-8177426 None:intergenic 25.0%
!!! GTCAAATGTTTTTAATGATC+GGG + chr1_3:8177657-8177676 None:intergenic 25.0%
! CAAATGAAGAAGAAAAACAT+TGG + chr1_3:8178624-8178643 None:intergenic 25.0%
!! CAATGTTTTTCTTCTTCATT+TGG - chr1_3:8178622-8178641 Msa0101520:intron 25.0%
! TTGTAGAAACAATGAAGATT+TGG + chr1_3:8178833-8178852 None:intergenic 25.0%
!!! TTCCGTTAAATTGTCATTTT+TGG - chr1_3:8179158-8179177 Msa0101520:five_prime_UTR 25.0%
!! GTTTGTTATTGCGTAGTTTA+TGG - chr1_3:8176000-8176019 Msa0101520:three_prime_UTR 30.0%
ATGAAACATGCCAAGATTTA+AGG + chr1_3:8176098-8176117 None:intergenic 30.0%
GTCATGAATAGTTTCAAAAG+TGG + chr1_3:8176313-8176332 None:intergenic 30.0%
!!! GATCTTTTAAAATCTAGGAG+GGG - chr1_3:8176671-8176690 Msa0101520:intron 30.0%
GCTTTCATATAAAAGTAGGT+TGG + chr1_3:8176922-8176941 None:intergenic 30.0%
AACAAGTGTGTTTGATTCTA+CGG + chr1_3:8177016-8177035 None:intergenic 30.0%
!! TTGTTTAGTATCGACATGTA+AGG - chr1_3:8177031-8177050 Msa0101520:intron 30.0%
TCCTGAATTATCTCATAAGA+AGG - chr1_3:8177117-8177136 Msa0101520:CDS 30.0%
TCCTTCTTATGAGATAATTC+AGG + chr1_3:8177121-8177140 None:intergenic 30.0%
TTCAATTTCATCTTTCCCTA+AGG + chr1_3:8177269-8177288 None:intergenic 30.0%
AATTGAAGTCTAAGAAAGGA+TGG - chr1_3:8177282-8177301 Msa0101520:CDS 30.0%
ATTGTGCCTCTTCATTTAAA+AGG - chr1_3:8177311-8177330 Msa0101520:CDS 30.0%
CAATACACATAACCATTCAT+GGG + chr1_3:8177437-8177456 None:intergenic 30.0%
CATGAATGGTTATGTGTATT+GGG - chr1_3:8177436-8177455 Msa0101520:intron 30.0%
GCATATGACTTAAATTAACC+TGG - chr1_3:8177549-8177568 Msa0101520:intron 30.0%
TGAACTGTAAAATACAGGTA+TGG + chr1_3:8177785-8177804 None:intergenic 30.0%
! TACCTGTATTTTACAGTTCA+TGG - chr1_3:8177785-8177804 Msa0101520:CDS 30.0%
AAGAATATCCTAAAGACTAG+AGG + chr1_3:8178153-8178172 None:intergenic 30.0%
!!! GTCTTTAGGATATTCTTTTG+CGG - chr1_3:8178156-8178175 Msa0101520:intron 30.0%
!!! TCTTTAGGATATTCTTTTGC+GGG - chr1_3:8178157-8178176 Msa0101520:intron 30.0%
! GCTTTGAATCAGATATTGAT+TGG - chr1_3:8178256-8178275 Msa0101520:intron 30.0%
CTTATTCAATTTCACAATCC+AGG + chr1_3:8178455-8178474 None:intergenic 30.0%
!!! AATAACTTTTAGCCTTATGC+CGG - chr1_3:8178522-8178541 Msa0101520:intron 30.0%
AGAAGAAAAACATTGGCATA+AGG + chr1_3:8178617-8178636 None:intergenic 30.0%
! CACATGATAGTGAAAAAAGA+AGG - chr1_3:8178752-8178771 Msa0101520:intron 30.0%
TTTCTACAATCACCTTTAAG+AGG - chr1_3:8178844-8178863 Msa0101520:intron 30.0%
TGTTTCTTTGTACCTTGAAA+AGG - chr1_3:8178938-8178957 Msa0101520:intron 30.0%
GTTTCTTTGTACCTTGAAAA+GGG - chr1_3:8178939-8178958 Msa0101520:intron 30.0%
! ATTCATTCATACCCTTTTCA+AGG + chr1_3:8178953-8178972 None:intergenic 30.0%
CAATAACAATAGTCCCTTTA+GGG + chr1_3:8179134-8179153 None:intergenic 30.0%
ACAATAACAATAGTCCCTTT+AGG + chr1_3:8179135-8179154 None:intergenic 30.0%
TTATTGAGGTGTAACATTTG+CGG - chr1_3:8179188-8179207 Msa0101520:five_prime_UTR 30.0%
TATTGCAAAATACTCCTCTC+TGG + chr1_3:8175971-8175990 None:intergenic 35.0%
!! AATTTTCCAGATCTAGGACA+CGG + chr1_3:8176400-8176419 None:intergenic 35.0%
! GAGGTTAATTTTCCAGATCT+AGG + chr1_3:8176406-8176425 None:intergenic 35.0%
! CTATTAGGGTTTTCTCCATA+TGG - chr1_3:8176635-8176654 Msa0101520:intron 35.0%
!!! TGAACTATTTTTAAGGGAGG+AGG + chr1_3:8177063-8177082 None:intergenic 35.0%
! CTCAAACATTTGTTGAATGC+AGG - chr1_3:8177226-8177245 Msa0101520:CDS 35.0%
AATAACGAAAAACGAGTCAC+CGG + chr1_3:8177344-8177363 None:intergenic 35.0%
AAAGTAAATTCAGCTAGCCA+TGG - chr1_3:8177368-8177387 Msa0101520:intron 35.0%
! AGATAAACTGGAGTTTTTCC+AGG + chr1_3:8177395-8177414 None:intergenic 35.0%
CCAATACACATAACCATTCA+TGG + chr1_3:8177438-8177457 None:intergenic 35.0%
CCATGAATGGTTATGTGTAT+TGG - chr1_3:8177435-8177454 Msa0101520:intron 35.0%
ACTACATTTGAGAAAAAGCC+AGG + chr1_3:8177570-8177589 None:intergenic 35.0%
ACACTGTCAATCAATCGTAA+TGG - chr1_3:8177631-8177650 Msa0101520:intron 35.0%
CACCATGAACTGTAAAATAC+AGG + chr1_3:8177790-8177809 None:intergenic 35.0%
CATGGTGTAGAATATGCATT+TGG - chr1_3:8177803-8177822 Msa0101520:CDS 35.0%
TTCAGGAAGTCGATATTCAT+CGG - chr1_3:8177890-8177909 Msa0101520:exon 35.0%
TACATCTTTGAATCCTGTTC+AGG - chr1_3:8177916-8177935 Msa0101520:intron 35.0%
! TTTGAATCCTGTTCAGGTTA+GGG - chr1_3:8177922-8177941 Msa0101520:intron 35.0%
ACATATGCTACAAGCTTACA+GGG - chr1_3:8178026-8178045 Msa0101520:five_prime_UTR 35.0%
AGGGAAATCAATTCCAACTT+GGG - chr1_3:8178045-8178064 Msa0101520:intron 35.0%
CAATTCCAACTTGGGTAAAT+CGG - chr1_3:8178053-8178072 Msa0101520:intron 35.0%
!!! CTTTAGGATATTCTTTTGCG+GGG - chr1_3:8178158-8178177 Msa0101520:intron 35.0%
! AAACATCACACACACAGTTT+TGG + chr1_3:8178213-8178232 None:intergenic 35.0%
TCTGATTCAAAGCAATAGCA+AGG + chr1_3:8178249-8178268 None:intergenic 35.0%
ATGGTTAGAGGTTACTGAAT+AGG - chr1_3:8178290-8178309 Msa0101520:intron 35.0%
ATGCATGATCCATATCACAT+GGG + chr1_3:8178395-8178414 None:intergenic 35.0%
GGTCAATTGACTGATTGAAA+TGG - chr1_3:8178478-8178497 Msa0101520:intron 35.0%
CGTTAAGGAGTAGAGTAATT+AGG + chr1_3:8178571-8178590 None:intergenic 35.0%
GAAAAACATTGGCATAAGGT+TGG + chr1_3:8178613-8178632 None:intergenic 35.0%
TATTGACACTTTGTGATGAC+AGG - chr1_3:8178658-8178677 Msa0101520:intron 35.0%
GAAGAAATTCTTAGTGCTTC+TGG + chr1_3:8178706-8178725 None:intergenic 35.0%
AGCACTAAGAATTTCTTCTG+TGG - chr1_3:8178708-8178727 Msa0101520:intron 35.0%
GCACTAAGAATTTCTTCTGT+GGG - chr1_3:8178709-8178728 Msa0101520:intron 35.0%
CACTAAGAATTTCTTCTGTG+GGG - chr1_3:8178710-8178729 Msa0101520:intron 35.0%
GATGATAAACAGCCTCTTAA+AGG + chr1_3:8178859-8178878 None:intergenic 35.0%
ATCTATTAACCGTTCCTTCA+AGG - chr1_3:8178906-8178925 Msa0101520:intron 35.0%
AAACAGTTACCTTTCCTTGA+AGG + chr1_3:8178923-8178942 None:intergenic 35.0%
ACTTACAAACAGACAAGAGA+TGG + chr1_3:8179037-8179056 None:intergenic 35.0%
TTAGGGACATCCGATAAAAT+TGG + chr1_3:8179117-8179136 None:intergenic 35.0%
! ATTTTATCGGATGTCCCTAA+AGG - chr1_3:8179117-8179136 Msa0101520:five_prime_UTR 35.0%
! TTTTATCGGATGTCCCTAAA+GGG - chr1_3:8179118-8179137 Msa0101520:five_prime_UTR 35.0%
TATGGTCTATGACGTTGACA+TGG - chr1_3:8176018-8176037 Msa0101520:three_prime_UTR 40.0%
ATGGTCTATGACGTTGACAT+GGG - chr1_3:8176019-8176038 Msa0101520:three_prime_UTR 40.0%
!! AGAGAGAGTGTTGCTCAAAA+CGG + chr1_3:8176133-8176152 None:intergenic 40.0%
CTGTCTTTGTCTCTCTCTAA+TGG - chr1_3:8176151-8176170 Msa0101520:three_prime_UTR 40.0%
AAATCTAGGAGGGGTAGAAT+TGG - chr1_3:8176680-8176699 Msa0101520:intron 40.0%
AAACTTCTGCAAAGCATGGT+TGG + chr1_3:8176729-8176748 None:intergenic 40.0%
AACCATGCTTTGCAGAAGTT+TGG - chr1_3:8176728-8176747 Msa0101520:intron 40.0%
GACATGTTTGGATGTTCTCT+TGG - chr1_3:8176823-8176842 Msa0101520:intron 40.0%
GGATGTTCTCTTGGTAGAAT+TGG - chr1_3:8176832-8176851 Msa0101520:intron 40.0%
ATTATGTGAGTGTTCGCCTT+AGG - chr1_3:8177250-8177269 Msa0101520:CDS 40.0%
TTATGTGAGTGTTCGCCTTA+GGG - chr1_3:8177251-8177270 Msa0101520:CDS 40.0%
TATGACTTGACACCCATGAA+TGG - chr1_3:8177422-8177441 Msa0101520:intron 40.0%
AATGGTTATGTGTATTGGGC+CGG - chr1_3:8177440-8177459 Msa0101520:intron 40.0%
AGAGTGATAGATACCAAGAC+CGG + chr1_3:8177462-8177481 None:intergenic 40.0%
!! GGTGTCGAAGGTATGATTTT+AGG - chr1_3:8177482-8177501 Msa0101520:intron 40.0%
CATGCTCTGTCTCTTAATCT+TGG - chr1_3:8177527-8177546 Msa0101520:intron 40.0%
!!! GTGTTTTTGAGGTTGAACCT+CGG - chr1_3:8177849-8177868 Msa0101520:CDS 40.0%
! CTTTGAATCCTGTTCAGGTT+AGG - chr1_3:8177921-8177940 Msa0101520:intron 40.0%
TGTGAGTGTGCAAACTACAA+CGG - chr1_3:8177956-8177975 Msa0101520:intron 40.0%
GACATATGCTACAAGCTTAC+AGG - chr1_3:8178025-8178044 Msa0101520:five_prime_UTR 40.0%
CAGGGAAATCAATTCCAACT+TGG - chr1_3:8178044-8178063 Msa0101520:intron 40.0%
! TGTTGCAACCTCTAGTCTTT+AGG - chr1_3:8178142-8178161 Msa0101520:intron 40.0%
! TTTTGCGGGGAAGGAATAAA+AGG - chr1_3:8178171-8178190 Msa0101520:intron 40.0%
!!! ATCACACACACAGTTTTGGA+TGG + chr1_3:8178209-8178228 None:intergenic 40.0%
CATGCATGATCCATATCACA+TGG + chr1_3:8178396-8178415 None:intergenic 40.0%
GATCGCATTCTGAGCAAAAT+CGG - chr1_3:8178417-8178436 Msa0101520:intron 40.0%
AATCGGAGTGAAATAGATCC+TGG - chr1_3:8178434-8178453 Msa0101520:intron 40.0%
AAAAAGTTCATCGCCACTAC+CGG + chr1_3:8178544-8178563 None:intergenic 40.0%
! ACATTGGCATAAGGTTGGTT+TGG + chr1_3:8178608-8178627 None:intergenic 40.0%
CTATCATGTGCCTCATGATT+AGG + chr1_3:8178742-8178761 None:intergenic 40.0%
GAGGCTGTTTATCATCAAAG+TGG - chr1_3:8178863-8178882 Msa0101520:intron 40.0%
TATCATCAAAGTGGCCATCA+TGG - chr1_3:8178872-8178891 Msa0101520:intron 40.0%
ATCATCAAAGTGGCCATCAT+GGG - chr1_3:8178873-8178892 Msa0101520:intron 40.0%
! GATTTGCTCAATTCCCATGA+TGG + chr1_3:8178889-8178908 None:intergenic 40.0%
TTAACCGTTCCTTCAAGGAA+AGG - chr1_3:8178911-8178930 Msa0101520:intron 40.0%
GTTACCTTTCCTTGAAGGAA+CGG + chr1_3:8178918-8178937 None:intergenic 40.0%
TGTTGCTCAAAACGGTGAAG+TGG + chr1_3:8176125-8176144 None:intergenic 45.0%
TTAATGCCGTGTCCTAGATC+TGG - chr1_3:8176391-8176410 Msa0101520:CDS 45.0%
TCACAGCACAGATACTAGAG+AGG + chr1_3:8176425-8176444 None:intergenic 45.0%
GACCAAACTTCTGCAAAGCA+TGG + chr1_3:8176733-8176752 None:intergenic 45.0%
GGTCTTGGTATCTATCACTC+TGG - chr1_3:8177461-8177480 Msa0101520:intron 45.0%
! ATCTATCACTCTGGTGTCGA+AGG - chr1_3:8177470-8177489 Msa0101520:intron 45.0%
CCTCAAAAACACCGCTTGTT+GGG + chr1_3:8177841-8177860 None:intergenic 45.0%
ACCTCAAAAACACCGCTTGT+TGG + chr1_3:8177842-8177861 None:intergenic 45.0%
ACTTCCTGAACTTGAAGCCT+GGG + chr1_3:8177880-8177899 None:intergenic 45.0%
ATGAACTCCCTAACCTGAAC+AGG + chr1_3:8177932-8177951 None:intergenic 45.0%
! TGTTCAGGTTAGGGAGTTCA+TGG - chr1_3:8177931-8177950 Msa0101520:intron 45.0%
!! GTAAATCGGCTTGCTAAGCT+AGG - chr1_3:8178067-8178086 Msa0101520:intron 45.0%
! AGGATATTCTTTTGCGGGGA+AGG - chr1_3:8178162-8178181 Msa0101520:intron 45.0%
!! TTGATTGGCCTGAAGCTAGA+TGG - chr1_3:8178271-8178290 Msa0101520:intron 45.0%
! ACCTCTAACCATCTAGCTTC+AGG + chr1_3:8178282-8178301 None:intergenic 45.0%
CTTACCAGTCCCATGTGATA+TGG - chr1_3:8178383-8178402 Msa0101520:intron 45.0%
TGATCCATATCACATGGGAC+TGG + chr1_3:8178390-8178409 None:intergenic 45.0%
!!! TTTTAGCCTTATGCCGGTAG+TGG - chr1_3:8178528-8178547 Msa0101520:intron 45.0%
!! ATAAGGTTGGTTTGGTGGCT+AGG + chr1_3:8178600-8178619 None:intergenic 45.0%
!! TTGGCATAAGGTTGGTTTGG+TGG + chr1_3:8178605-8178624 None:intergenic 45.0%
CTATGACGTTGACATGGGAC+AGG - chr1_3:8176024-8176043 Msa0101520:three_prime_UTR 50.0%
GTTGACATGGGACAGGACAA+TGG - chr1_3:8176031-8176050 Msa0101520:three_prime_UTR 50.0%
AATTCAGCTAGCCATGGACC+TGG - chr1_3:8177374-8177393 Msa0101520:intron 50.0%
! CTGGAGTTTTTCCAGGTCCA+TGG + chr1_3:8177388-8177407 None:intergenic 50.0%
TATGTGTATTGGGCCGGTCT+TGG - chr1_3:8177446-8177465 Msa0101520:intron 50.0%
GCTCATGACTACCCAACAAG+CGG - chr1_3:8177827-8177846 Msa0101520:CDS 50.0%
!! CCCAACAAGCGGTGTTTTTG+AGG - chr1_3:8177838-8177857 Msa0101520:CDS 50.0%
! AATGCCCAGGCTTCAAGTTC+AGG - chr1_3:8177873-8177892 Msa0101520:CDS 50.0%
GACTTCCTGAACTTGAAGCC+TGG + chr1_3:8177881-8177900 None:intergenic 50.0%
! GCAAGCCGATTTACCCAAGT+TGG + chr1_3:8178061-8178080 None:intergenic 50.0%
GCCTGAAGCTAGATGGTTAG+AGG - chr1_3:8178278-8178297 Msa0101520:intron 50.0%
GGGGCATGATCCTAATCATG+AGG - chr1_3:8178729-8178748 Msa0101520:intron 50.0%
TCATCGCCACTACCGGCATA+AGG + chr1_3:8178537-8178556 None:intergenic 55.0%
!! TTGGTTTGGTGGCTAGGTGG+AGG + chr1_3:8178594-8178613 None:intergenic 55.0%
!! AGGTTGGTTTGGTGGCTAGG+TGG + chr1_3:8178597-8178616 None:intergenic 55.0%
GTTGAACCTCGGCAATGCCC+AGG - chr1_3:8177860-8177879 Msa0101520:CDS 60.0%
! TTGAAGCCTGGGCATTGCCG+AGG + chr1_3:8177869-8177888 None:intergenic 60.0%
!! GTGGCTAGGTGGAGGCGTTA+AGG + chr1_3:8178586-8178605 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8175959 8179222 8175959 ID=Msa0101520;Name=Msa0101520
chr1_3 mRNA 8175959 8179222 8175959 ID=Msa0101520-mRNA-1;Parent=Msa0101520;Name=Msa0101520-mRNA-1;_AED=0.19;_eAED=0.19;_QI=299|1|1|1|0.5|0.4|5|286|252
chr1_3 exon 8175959 8176501 8175959 ID=Msa0101520-mRNA-1:exon:3236;Parent=Msa0101520-mRNA-1
chr1_3 exon 8177093 8177380 8177093 ID=Msa0101520-mRNA-1:exon:3235;Parent=Msa0101520-mRNA-1
chr1_3 exon 8177690 8177933 8177690 ID=Msa0101520-mRNA-1:exon:3234;Parent=Msa0101520-mRNA-1
chr1_3 exon 8178015 8178045 8178015 ID=Msa0101520-mRNA-1:exon:3233;Parent=Msa0101520-mRNA-1
chr1_3 exon 8178985 8179222 8178985 ID=Msa0101520-mRNA-1:exon:3232;Parent=Msa0101520-mRNA-1
chr1_3 five_prime_UTR 8178985 8179222 8178985 ID=Msa0101520-mRNA-1:five_prime_utr;Parent=Msa0101520-mRNA-1
chr1_3 five_prime_UTR 8178015 8178045 8178015 ID=Msa0101520-mRNA-1:five_prime_utr;Parent=Msa0101520-mRNA-1
chr1_3 five_prime_UTR 8177904 8177933 8177904 ID=Msa0101520-mRNA-1:five_prime_utr;Parent=Msa0101520-mRNA-1
chr1_3 CDS 8177690 8177903 8177690 ID=Msa0101520-mRNA-1:cds;Parent=Msa0101520-mRNA-1
chr1_3 CDS 8177093 8177380 8177093 ID=Msa0101520-mRNA-1:cds;Parent=Msa0101520-mRNA-1
chr1_3 CDS 8176245 8176501 8176245 ID=Msa0101520-mRNA-1:cds;Parent=Msa0101520-mRNA-1
chr1_3 three_prime_UTR 8175959 8176244 8175959 ID=Msa0101520-mRNA-1:three_prime_utr;Parent=Msa0101520-mRNA-1
Gene Sequence

>Msa0101520

ATGAAATTGAAGTCTAAGAAAGGATGGAAATCTATTGTGCCTCTTCATTTAAAAGGAAAATCACCGGTGACTCGTTTTTCGTTATTTCGCAAAGTAAATTCAGCTAGCCATGGACCTGGAAAAACTCCAGTTTATCTTAATGTGTATGACTTGACACCCATGAATGGTTATGTGTATTGGGCCGGTCTTGGTATCTATCACTCTGGTGTCGAAGTTCATGGTGTAGAATATGCATTTGGAGCTCATGACTACCCAACAAGCGGTGTTTTTGAGGTTGAACCTCGGCAATGCCCAGGCTTCAAGTTCAGGAAGTCGATATTCATCGGAACTACATCTTTGAATCCTGTTCAGGTTAGGGAGTTCATGGAATGTGAGTGTGCAAACTACAACGGCGACACATATCACTTAATTGCTAAGAACTGCAATCACTTCTGCAAAGACATATGCTACAAGCTTACAGGGAAATCAATTCCAACTTGGGTAAATCGGCTTGCTAAGCTAGGTTCAATTTGCAACTGCATTCTTCCAGAAGCACTAAGAATTTCTTCTGTGGGGCATGATCCTAATCATGAGGCACATGATAGTGAAAAAAGAAGGCTAAGAAGTGCTTTCAATTCATTGTCTTCAATCTCAATGCGTCAAAAGCAGTTATCCAAATCTTCATTGTTTCTACAATCACCTTTAAGAGGCTGTTTATCATCAAAGTGGCCATCATGGGAATTGAGCAAATCTATTAACCGTTCCTTCAAGGAAAGGTAA
Protein sequence

>Msa0101520

MKLKSKKGWKSIVPLHLKGKSPVTRFSLFRKVNSASHGPGKTPVYLNVYDLTPMNGYVYWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEPRQCPGFKFRKSIFIGTTSLNPVQVREFMECECANYNGDTYHLIAKNCNHFCKDICYKLTGKSIPTWVNRLAKLGSICNCILPEALRISSVGHDPNHEAHDSEKRRLRSAFNSLSSISMRQKQLSKSSLFLQSPLRGCLSSKWPSWELSKSINRSFKER*