Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101720 | sp|Q8RYD1|REM16_ARATH | 52.632 | 133 | 61 | 2 | 8 | 139 | 11 | 142 | 2.37e-44 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101720 | G7I4K5 | 82.911 | 158 | 22 | 2 | 1 | 153 | 1 | 158 | 1.12e-86 | 268 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0101720 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101720 | Msa0110970 | 0.801701 | 7.953935e-49 | -8.615850e-47 |
| Msa0101720 | Msa0410500 | 0.806025 | 1.005032e-49 | -8.615850e-47 |
| Msa0101720 | Msa0574890 | 0.808062 | 3.723844e-50 | -8.615850e-47 |
| Msa0101720 | Msa0741900 | 0.813465 | 2.524529e-51 | -8.615850e-47 |
| Msa0101720 | Msa0822990 | 0.810337 | 1.211780e-50 | -8.615850e-47 |
| Msa0101720 | Msa0862100 | 0.816540 | 5.246745e-52 | -8.615850e-47 |
| Msa0101720 | Msa0930780 | 0.803621 | 3.194493e-49 | -8.615850e-47 |
| Msa0101720 | Msa1172670 | 0.808721 | 2.694710e-50 | -8.615850e-47 |
| Msa0101720 | Msa1320740 | 0.804215 | 2.404105e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101720 | MtrunA17_Chr1g0154111 | 82.911 | 158 | 22 | 2 | 1 | 153 | 1 | 158 | 1.89e-88 | 269 |
| Msa0101720 | MtrunA17_Chr1g0154111 | 77.174 | 92 | 18 | 1 | 36 | 124 | 368 | 459 | 1.84e-41 | 145 |
| Msa0101720 | MtrunA17_Chr1g0154241 | 79.085 | 153 | 32 | 0 | 1 | 153 | 1 | 153 | 3.74e-87 | 256 |
| Msa0101720 | MtrunA17_Chr1g0154211 | 78.667 | 150 | 32 | 0 | 4 | 153 | 5 | 154 | 1.32e-84 | 253 |
| Msa0101720 | MtrunA17_Chr1g0154191 | 77.778 | 153 | 33 | 1 | 1 | 152 | 1 | 153 | 2.04e-82 | 247 |
| Msa0101720 | MtrunA17_Chr1g0154131 | 78.065 | 155 | 30 | 1 | 1 | 151 | 1 | 155 | 2.19e-82 | 250 |
| Msa0101720 | MtrunA17_Chr1g0154131 | 77.241 | 145 | 32 | 1 | 2 | 146 | 164 | 307 | 4.05e-77 | 237 |
| Msa0101720 | MtrunA17_Chr1g0154101 | 80.795 | 151 | 28 | 1 | 2 | 151 | 5 | 155 | 3.40e-81 | 256 |
| Msa0101720 | MtrunA17_Chr1g0154101 | 73.103 | 145 | 38 | 1 | 7 | 151 | 169 | 312 | 4.70e-69 | 223 |
| Msa0101720 | MtrunA17_Chr1g0154171 | 79.720 | 143 | 29 | 0 | 4 | 146 | 5 | 147 | 7.35e-80 | 240 |
| Msa0101720 | MtrunA17_Chr1g0154161 | 78.912 | 147 | 25 | 2 | 4 | 149 | 12 | 153 | 3.20e-78 | 235 |
| Msa0101720 | MtrunA17_Chr1g0154251 | 70.701 | 157 | 39 | 2 | 2 | 151 | 7 | 163 | 1.89e-74 | 231 |
| Msa0101720 | MtrunA17_Chr1g0154071 | 76.866 | 134 | 31 | 0 | 3 | 136 | 9 | 142 | 2.31e-69 | 217 |
| Msa0101720 | MtrunA17_Chr1g0154071 | 68.310 | 142 | 44 | 1 | 10 | 151 | 145 | 285 | 1.69e-63 | 202 |
| Msa0101720 | MtrunA17_Chr1g0154151 | 68.103 | 116 | 26 | 1 | 36 | 151 | 19 | 123 | 3.57e-49 | 161 |
| Msa0101720 | MtrunA17_Chr1g0154041 | 37.255 | 102 | 63 | 1 | 21 | 122 | 15 | 115 | 9.71e-17 | 76.3 |
| Msa0101720 | MtrunA17_Chr7g0233561 | 34.146 | 123 | 79 | 2 | 22 | 144 | 19 | 139 | 8.59e-16 | 72.8 |
| Msa0101720 | MtrunA17_Chr3g0131891 | 34.021 | 97 | 63 | 1 | 20 | 115 | 17 | 113 | 4.10e-15 | 71.2 |
| Msa0101720 | MtrunA17_Chr7g0233571 | 35.294 | 102 | 65 | 1 | 15 | 115 | 3 | 104 | 7.05e-15 | 69.3 |
| Msa0101720 | MtrunA17_Chr1g0162441 | 39.080 | 87 | 53 | 0 | 25 | 111 | 11 | 97 | 5.61e-13 | 65.5 |
| Msa0101720 | MtrunA17_Chr7g0233531 | 36.709 | 79 | 50 | 0 | 37 | 115 | 2 | 80 | 5.64e-13 | 64.7 |
| Msa0101720 | MtrunA17_Chr5g0419201 | 27.419 | 124 | 87 | 1 | 22 | 145 | 17 | 137 | 2.28e-12 | 62.0 |
| Msa0101720 | MtrunA17_Chr5g0429931 | 32.558 | 129 | 80 | 4 | 30 | 158 | 5 | 126 | 1.04e-11 | 60.8 |
| Msa0101720 | MtrunA17_Chr4g0033961 | 38.372 | 86 | 53 | 0 | 26 | 111 | 11 | 96 | 1.04e-11 | 61.6 |
| Msa0101720 | MtrunA17_Chr1g0162411 | 37.363 | 91 | 57 | 0 | 25 | 115 | 11 | 101 | 3.81e-11 | 60.1 |
| Msa0101720 | MtrunA17_Chr8g0390841 | 30.392 | 102 | 70 | 1 | 15 | 115 | 32 | 133 | 7.30e-11 | 59.3 |
| Msa0101720 | MtrunA17_Chr7g0233541 | 36.486 | 74 | 47 | 0 | 37 | 110 | 2 | 75 | 8.08e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101720 | AT4G33280.2 | 49.333 | 150 | 72 | 3 | 8 | 154 | 11 | 159 | 2.86e-46 | 152 |
| Msa0101720 | AT4G33280.1 | 52.632 | 133 | 61 | 2 | 8 | 139 | 11 | 142 | 2.40e-45 | 151 |
| Msa0101720 | AT4G33280.3 | 49.333 | 150 | 72 | 3 | 8 | 154 | 11 | 159 | 4.01e-45 | 152 |
| Msa0101720 | AT4G34400.2 | 39.450 | 109 | 61 | 3 | 15 | 120 | 8 | 114 | 1.10e-21 | 90.1 |
| Msa0101720 | AT4G34400.1 | 39.450 | 109 | 61 | 3 | 15 | 120 | 8 | 114 | 1.10e-21 | 90.1 |
| Msa0101720 | AT3G06220.1 | 34.286 | 105 | 68 | 1 | 22 | 126 | 11 | 114 | 5.46e-16 | 71.6 |
| Msa0101720 | AT3G18990.2 | 39.785 | 93 | 55 | 1 | 19 | 111 | 5 | 96 | 8.18e-16 | 73.6 |
| Msa0101720 | AT3G18990.1 | 39.785 | 93 | 55 | 1 | 19 | 111 | 5 | 96 | 8.65e-16 | 73.6 |
| Msa0101720 | AT3G06160.1 | 33.333 | 105 | 68 | 2 | 22 | 126 | 26 | 128 | 6.83e-15 | 70.9 |
| Msa0101720 | AT3G06160.5 | 33.333 | 105 | 68 | 2 | 22 | 126 | 11 | 113 | 6.93e-15 | 70.9 |
| Msa0101720 | AT3G06160.4 | 33.333 | 105 | 68 | 2 | 22 | 126 | 11 | 113 | 6.93e-15 | 70.9 |
| Msa0101720 | AT3G06160.3 | 33.333 | 105 | 68 | 2 | 22 | 126 | 11 | 113 | 6.93e-15 | 70.9 |
| Msa0101720 | AT3G06160.2 | 33.333 | 105 | 68 | 2 | 22 | 126 | 70 | 172 | 9.62e-15 | 70.5 |
| Msa0101720 | AT5G60130.5 | 39.560 | 91 | 50 | 2 | 33 | 118 | 25 | 115 | 4.96e-14 | 67.8 |
| Msa0101720 | AT5G60130.3 | 40.449 | 89 | 48 | 2 | 35 | 118 | 1 | 89 | 7.24e-14 | 67.8 |
| Msa0101720 | AT5G60130.2 | 40.449 | 89 | 48 | 2 | 35 | 118 | 27 | 115 | 8.75e-14 | 67.4 |
| Msa0101720 | AT5G60130.4 | 40.449 | 89 | 48 | 2 | 35 | 118 | 24 | 112 | 1.16e-13 | 67.4 |
| Msa0101720 | AT5G60130.1 | 40.449 | 89 | 48 | 2 | 35 | 118 | 27 | 115 | 1.16e-13 | 67.4 |
| Msa0101720 | AT5G66980.1 | 41.111 | 90 | 48 | 2 | 33 | 118 | 21 | 109 | 2.43e-13 | 66.6 |
| Msa0101720 | AT3G53310.1 | 35.443 | 79 | 51 | 0 | 33 | 111 | 22 | 100 | 3.93e-12 | 62.8 |
| Msa0101720 | AT3G18960.2 | 35.417 | 96 | 61 | 1 | 22 | 117 | 31 | 125 | 6.25e-12 | 61.2 |
| Msa0101720 | AT4G01580.1 | 35.417 | 96 | 61 | 1 | 22 | 117 | 31 | 125 | 7.10e-12 | 60.8 |
| Msa0101720 | AT3G18960.1 | 35.417 | 96 | 61 | 1 | 22 | 117 | 31 | 125 | 9.16e-12 | 60.8 |
| Msa0101720 | AT5G57720.1 | 27.500 | 120 | 86 | 1 | 19 | 137 | 10 | 129 | 1.11e-11 | 61.6 |
| Msa0101720 | AT5G60140.1 | 31.193 | 109 | 71 | 2 | 13 | 118 | 7 | 114 | 4.22e-11 | 60.1 |
| Msa0101720 | AT3G18960.3 | 37.931 | 87 | 51 | 2 | 31 | 117 | 5 | 88 | 7.99e-11 | 57.8 |
Find 33 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCCACTAGGACCTTTA+AGG | 0.178570 | 1_3:+8366164 | None:intergenic |
| TAACAAGTTGTTGTTGAAAA+TGG | 0.201740 | 1_3:+8366550 | None:intergenic |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1_3:-8366178 | Msa0101720:CDS |
| AGTGGAGTTGTGTGGGATAT+TGG | 0.305311 | 1_3:-8366151 | Msa0101720:CDS |
| CATGGGAGGAAGAGATTTAC+TGG | 0.311171 | 1_3:-8366617 | Msa0101720:CDS |
| AATGGGTGGTACTCAGAAAT+TGG | 0.319733 | 1_3:+8366568 | None:intergenic |
| TGAAATGGATGAACTGAAAA+TGG | 0.343707 | 1_3:+8366592 | None:intergenic |
| TACTCAGAAATTGGGTGAAA+TGG | 0.383889 | 1_3:+8366577 | None:intergenic |
| GTGGAGTTGTGTGGGATATT+GGG | 0.385625 | 1_3:-8366150 | Msa0101720:CDS |
| CAATGGTGAATCACTCTTTG+AGG | 0.437853 | 1_3:-8366029 | Msa0101720:CDS |
| AACAAGTTGTTGTTGAAAAT+GGG | 0.464779 | 1_3:+8366551 | None:intergenic |
| TGGGAGGTGGAAGAAGTTCA+TGG | 0.473237 | 1_3:-8366635 | Msa0101720:CDS |
| AACTCCACTAGGACCTTTAA+GGG | 0.479312 | 1_3:+8366165 | None:intergenic |
| TTCCTTGTCTTTAAGTACAA+TGG | 0.496096 | 1_3:-8366046 | Msa0101720:CDS |
| ATGGGTGGTACTCAGAAATT+GGG | 0.499844 | 1_3:+8366569 | None:intergenic |
| AGATGATACTGTTTACTTCA+CGG | 0.508557 | 1_3:-8366116 | Msa0101720:CDS |
| TTTCATTCTCAAATGGGAGG+TGG | 0.528232 | 1_3:-8366648 | None:intergenic |
| CTGTTTACTTCACGGACGGT+TGG | 0.547363 | 1_3:-8366108 | Msa0101720:CDS |
| ATATCCCACACAACTCCACT+AGG | 0.550354 | 1_3:+8366154 | None:intergenic |
| CACCATTGTACTTAAAGACA+AGG | 0.554483 | 1_3:+8366044 | None:intergenic |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.558725 | 1_3:-8366159 | Msa0101720:CDS |
| GGACAAGCTCATACTGAACA+AGG | 0.580719 | 1_3:-8365944 | Msa0101720:CDS |
| GGGAGGTGGAAGAAGTTCAT+GGG | 0.586498 | 1_3:-8366634 | Msa0101720:CDS |
| AGGTCCTAGTGGAGTTGTGT+GGG | 0.591978 | 1_3:-8366158 | Msa0101720:CDS |
| CTATTTCATTCTCAAATGGG+AGG | 0.618562 | 1_3:-8366651 | None:intergenic |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_3:-8366169 | Msa0101720:CDS |
| GATACTGTTTACTTCACGGA+CGG | 0.631641 | 1_3:-8366112 | Msa0101720:CDS |
| AGGTGGAAGAAGTTCATGGG+AGG | 0.632051 | 1_3:-8366631 | Msa0101720:CDS |
| ACAAGCTCATACTGAACAAG+GGG | 0.635406 | 1_3:-8365942 | Msa0101720:CDS |
| GACAAGCTCATACTGAACAA+GGG | 0.653892 | 1_3:-8365943 | Msa0101720:CDS |
| TTCAAAGAATTCTGTCAGAG+AGG | 0.666484 | 1_3:-8365903 | Msa0101720:CDS |
| AAGTTGTTGTTGAAAATGGG+TGG | 0.700580 | 1_3:+8366554 | None:intergenic |
| CAAGCTCATACTGAACAAGG+GGG | 0.792313 | 1_3:-8365941 | Msa0101720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGTTTCATTTAGAAGA+TGG | + | chr1_3:8366012-8366031 | None:intergenic | 20.0% |
| !!! | GAAATTTATATTTTAACTGC+AGG | - | chr1_3:8366265-8366284 | Msa0101720:intron | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_3:8366296-8366315 | None:intergenic | 20.0% |
| !!! | TTTGAGGTTTTAATCTTTAA+TGG | - | chr1_3:8366494-8366513 | Msa0101720:intron | 20.0% |
| !!! | TTTTTGTTTCATTTAGAAGA+TGG | + | chr1_3:8366012-8366031 | None:intergenic | 20.0% |
| !!! | GAAATTTATATTTTAACTGC+AGG | - | chr1_3:8366265-8366284 | Msa0101720:intron | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_3:8366296-8366315 | None:intergenic | 20.0% |
| !!! | TTTGAGGTTTTAATCTTTAA+TGG | - | chr1_3:8366494-8366513 | Msa0101720:intron | 20.0% |
| !! | AACAAGTTGTTGTTGAAAAT+GGG | + | chr1_3:8365959-8365978 | None:intergenic | 25.0% |
| !! | TAACAAGTTGTTGTTGAAAA+TGG | + | chr1_3:8365960-8365979 | None:intergenic | 25.0% |
| ! | TCAATACTATAGTCAAAGAA+AGG | + | chr1_3:8366040-8366059 | None:intergenic | 25.0% |
| !! | ATGTATCTTTTAATCTCAGA+TGG | - | chr1_3:8366243-8366262 | Msa0101720:intron | 25.0% |
| !!! | TCTTATTTTGTTCTAGAATG+TGG | - | chr1_3:8366542-8366561 | Msa0101720:intron | 25.0% |
| !! | AACAAGTTGTTGTTGAAAAT+GGG | + | chr1_3:8365959-8365978 | None:intergenic | 25.0% |
| !! | TAACAAGTTGTTGTTGAAAA+TGG | + | chr1_3:8365960-8365979 | None:intergenic | 25.0% |
| ! | TCAATACTATAGTCAAAGAA+AGG | + | chr1_3:8366040-8366059 | None:intergenic | 25.0% |
| !! | ATGTATCTTTTAATCTCAGA+TGG | - | chr1_3:8366243-8366262 | Msa0101720:intron | 25.0% |
| !!! | TCTTATTTTGTTCTAGAATG+TGG | - | chr1_3:8366542-8366561 | Msa0101720:intron | 25.0% |
| TGAAATGGATGAACTGAAAA+TGG | + | chr1_3:8365918-8365937 | None:intergenic | 30.0% | |
| TGTTTCATTTAGAAGATGGA+AGG | + | chr1_3:8366008-8366027 | None:intergenic | 30.0% | |
| TGATTTCAGCAATGATTTAC+AGG | + | chr1_3:8366188-8366207 | None:intergenic | 30.0% | |
| AGATGATACTGTTTACTTCA+CGG | - | chr1_3:8366391-8366410 | Msa0101720:intron | 30.0% | |
| TTCCTTGTCTTTAAGTACAA+TGG | - | chr1_3:8366461-8366480 | Msa0101720:intron | 30.0% | |
| TGAAATGGATGAACTGAAAA+TGG | + | chr1_3:8365918-8365937 | None:intergenic | 30.0% | |
| TGTTTCATTTAGAAGATGGA+AGG | + | chr1_3:8366008-8366027 | None:intergenic | 30.0% | |
| TGATTTCAGCAATGATTTAC+AGG | + | chr1_3:8366188-8366207 | None:intergenic | 30.0% | |
| AGATGATACTGTTTACTTCA+CGG | - | chr1_3:8366391-8366410 | Msa0101720:intron | 30.0% | |
| TTCCTTGTCTTTAAGTACAA+TGG | - | chr1_3:8366461-8366480 | Msa0101720:intron | 30.0% | |
| TACTCAGAAATTGGGTGAAA+TGG | + | chr1_3:8365933-8365952 | None:intergenic | 35.0% | |
| ! | AAGTTGTTGTTGAAAATGGG+TGG | + | chr1_3:8365956-8365975 | None:intergenic | 35.0% |
| GAACTAACAAGTGCAGTTAA+AGG | + | chr1_3:8366112-8366131 | None:intergenic | 35.0% | |
| CACCATTGTACTTAAAGACA+AGG | + | chr1_3:8366466-8366485 | None:intergenic | 35.0% | |
| TTCAAAGAATTCTGTCAGAG+AGG | - | chr1_3:8366604-8366623 | Msa0101720:CDS | 35.0% | |
| TACTCAGAAATTGGGTGAAA+TGG | + | chr1_3:8365933-8365952 | None:intergenic | 35.0% | |
| ! | AAGTTGTTGTTGAAAATGGG+TGG | + | chr1_3:8365956-8365975 | None:intergenic | 35.0% |
| GAACTAACAAGTGCAGTTAA+AGG | + | chr1_3:8366112-8366131 | None:intergenic | 35.0% | |
| CACCATTGTACTTAAAGACA+AGG | + | chr1_3:8366466-8366485 | None:intergenic | 35.0% | |
| TTCAAAGAATTCTGTCAGAG+AGG | - | chr1_3:8366604-8366623 | Msa0101720:CDS | 35.0% | |
| ATGGGTGGTACTCAGAAATT+GGG | + | chr1_3:8365941-8365960 | None:intergenic | 40.0% | |
| AATGGGTGGTACTCAGAAAT+TGG | + | chr1_3:8365942-8365961 | None:intergenic | 40.0% | |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1_3:8366332-8366351 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1_3:8366329-8366348 | Msa0101720:intron | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | + | chr1_3:8366345-8366364 | None:intergenic | 40.0% | |
| GATACTGTTTACTTCACGGA+CGG | - | chr1_3:8366395-8366414 | Msa0101720:intron | 40.0% | |
| CAATGGTGAATCACTCTTTG+AGG | - | chr1_3:8366478-8366497 | Msa0101720:intron | 40.0% | |
| GACAAGCTCATACTGAACAA+GGG | - | chr1_3:8366564-8366583 | Msa0101720:CDS | 40.0% | |
| ACAAGCTCATACTGAACAAG+GGG | - | chr1_3:8366565-8366584 | Msa0101720:CDS | 40.0% | |
| ATGGGTGGTACTCAGAAATT+GGG | + | chr1_3:8365941-8365960 | None:intergenic | 40.0% | |
| AATGGGTGGTACTCAGAAAT+TGG | + | chr1_3:8365942-8365961 | None:intergenic | 40.0% | |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1_3:8366332-8366351 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1_3:8366329-8366348 | Msa0101720:intron | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | + | chr1_3:8366345-8366364 | None:intergenic | 40.0% | |
| GATACTGTTTACTTCACGGA+CGG | - | chr1_3:8366395-8366414 | Msa0101720:intron | 40.0% | |
| CAATGGTGAATCACTCTTTG+AGG | - | chr1_3:8366478-8366497 | Msa0101720:intron | 40.0% | |
| GACAAGCTCATACTGAACAA+GGG | - | chr1_3:8366564-8366583 | Msa0101720:CDS | 40.0% | |
| ACAAGCTCATACTGAACAAG+GGG | - | chr1_3:8366565-8366584 | Msa0101720:CDS | 40.0% | |
| CATGGGAGGAAGAGATTTAC+TGG | - | chr1_3:8365890-8365909 | Msa0101720:CDS | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | + | chr1_3:8366346-8366365 | None:intergenic | 45.0% | |
| ATATCCCACACAACTCCACT+AGG | + | chr1_3:8366356-8366375 | None:intergenic | 45.0% | |
| AGTGGAGTTGTGTGGGATAT+TGG | - | chr1_3:8366356-8366375 | Msa0101720:intron | 45.0% | |
| GTGGAGTTGTGTGGGATATT+GGG | - | chr1_3:8366357-8366376 | Msa0101720:intron | 45.0% | |
| GGACAAGCTCATACTGAACA+AGG | - | chr1_3:8366563-8366582 | Msa0101720:CDS | 45.0% | |
| CAAGCTCATACTGAACAAGG+GGG | - | chr1_3:8366566-8366585 | Msa0101720:CDS | 45.0% | |
| ACTGAACAAGGGGGTAACAA+AGG | - | chr1_3:8366575-8366594 | Msa0101720:CDS | 45.0% | |
| CATGGGAGGAAGAGATTTAC+TGG | - | chr1_3:8365890-8365909 | Msa0101720:CDS | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | + | chr1_3:8366346-8366365 | None:intergenic | 45.0% | |
| ATATCCCACACAACTCCACT+AGG | + | chr1_3:8366356-8366375 | None:intergenic | 45.0% | |
| AGTGGAGTTGTGTGGGATAT+TGG | - | chr1_3:8366356-8366375 | Msa0101720:intron | 45.0% | |
| GTGGAGTTGTGTGGGATATT+GGG | - | chr1_3:8366357-8366376 | Msa0101720:intron | 45.0% | |
| GGACAAGCTCATACTGAACA+AGG | - | chr1_3:8366563-8366582 | Msa0101720:CDS | 45.0% | |
| CAAGCTCATACTGAACAAGG+GGG | - | chr1_3:8366566-8366585 | Msa0101720:CDS | 45.0% | |
| ACTGAACAAGGGGGTAACAA+AGG | - | chr1_3:8366575-8366594 | Msa0101720:CDS | 45.0% | |
| TGGGAGGTGGAAGAAGTTCA+TGG | - | chr1_3:8365872-8365891 | Msa0101720:CDS | 50.0% | |
| GGGAGGTGGAAGAAGTTCAT+GGG | - | chr1_3:8365873-8365892 | Msa0101720:CDS | 50.0% | |
| AGGTGGAAGAAGTTCATGGG+AGG | - | chr1_3:8365876-8365895 | Msa0101720:CDS | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_3:8366338-8366357 | Msa0101720:intron | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1_3:8366348-8366367 | Msa0101720:intron | 50.0% | |
| AGGTCCTAGTGGAGTTGTGT+GGG | - | chr1_3:8366349-8366368 | Msa0101720:intron | 50.0% | |
| CTGTTTACTTCACGGACGGT+TGG | - | chr1_3:8366399-8366418 | Msa0101720:intron | 50.0% | |
| TGGGAGGTGGAAGAAGTTCA+TGG | - | chr1_3:8365872-8365891 | Msa0101720:CDS | 50.0% | |
| GGGAGGTGGAAGAAGTTCAT+GGG | - | chr1_3:8365873-8365892 | Msa0101720:CDS | 50.0% | |
| AGGTGGAAGAAGTTCATGGG+AGG | - | chr1_3:8365876-8365895 | Msa0101720:CDS | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_3:8366338-8366357 | Msa0101720:intron | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1_3:8366348-8366367 | Msa0101720:intron | 50.0% | |
| AGGTCCTAGTGGAGTTGTGT+GGG | - | chr1_3:8366349-8366368 | Msa0101720:intron | 50.0% | |
| CTGTTTACTTCACGGACGGT+TGG | - | chr1_3:8366399-8366418 | Msa0101720:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 8365871 | 8366658 | 8365871 | ID=Msa0101720;Name=Msa0101720 |
| chr1_3 | mRNA | 8365871 | 8366658 | 8365871 | ID=Msa0101720-mRNA-1;Parent=Msa0101720;Name=Msa0101720-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|158 |
| chr1_3 | exon | 8366554 | 8366658 | 8366554 | ID=Msa0101720-mRNA-1:exon:3375;Parent=Msa0101720-mRNA-1 |
| chr1_3 | exon | 8365871 | 8366242 | 8365871 | ID=Msa0101720-mRNA-1:exon:3374;Parent=Msa0101720-mRNA-1 |
| chr1_3 | CDS | 8366554 | 8366658 | 8366554 | ID=Msa0101720-mRNA-1:cds;Parent=Msa0101720-mRNA-1 |
| chr1_3 | CDS | 8365871 | 8366242 | 8365871 | ID=Msa0101720-mRNA-1:cds;Parent=Msa0101720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
